Multiple sequence alignment - TraesCS2B01G607400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G607400 chr2B 100.000 2029 0 0 1 2029 788003332 788005360 0.000000e+00 3747.0
1 TraesCS2B01G607400 chr2B 100.000 694 0 0 2304 2997 788005635 788006328 0.000000e+00 1282.0
2 TraesCS2B01G607400 chr2D 88.068 1299 78 33 766 2029 647815189 647813933 0.000000e+00 1469.0
3 TraesCS2B01G607400 chr2D 78.917 1034 157 41 992 1988 33875370 33874361 0.000000e+00 645.0
4 TraesCS2B01G607400 chr2D 94.828 290 13 2 2571 2858 452293462 452293751 4.560000e-123 451.0
5 TraesCS2B01G607400 chr2D 94.828 290 13 1 2571 2858 555068004 555068293 4.560000e-123 451.0
6 TraesCS2B01G607400 chr2D 94.198 293 15 1 2568 2858 535162826 535163118 2.120000e-121 446.0
7 TraesCS2B01G607400 chr2D 84.647 241 23 8 2304 2533 647813865 647813628 8.360000e-56 228.0
8 TraesCS2B01G607400 chr2A 86.077 1300 90 42 766 2026 772656494 772657741 0.000000e+00 1314.0
9 TraesCS2B01G607400 chr2A 88.728 1038 64 20 993 2029 772663252 772664237 0.000000e+00 1219.0
10 TraesCS2B01G607400 chr2A 87.736 318 33 3 1685 1996 772655107 772655424 1.700000e-97 366.0
11 TraesCS2B01G607400 chr2A 83.929 280 31 8 2304 2572 772664303 772664579 3.830000e-64 255.0
12 TraesCS2B01G607400 chr2A 80.000 360 56 8 1635 1987 36706283 36705933 4.960000e-63 252.0
13 TraesCS2B01G607400 chr2A 88.235 221 10 9 766 973 772662982 772663199 1.780000e-62 250.0
14 TraesCS2B01G607400 chr2A 89.051 137 12 3 2863 2997 772664578 772664713 1.850000e-37 167.0
15 TraesCS2B01G607400 chr2A 87.970 133 12 3 2316 2448 772655515 772655643 1.440000e-33 154.0
16 TraesCS2B01G607400 chr2A 79.845 129 22 4 2872 2997 574226749 574226876 1.140000e-14 91.6
17 TraesCS2B01G607400 chr5B 96.899 774 17 7 1 767 163986976 163987749 0.000000e+00 1290.0
18 TraesCS2B01G607400 chr5B 96.378 773 22 4 1 767 164005597 164006369 0.000000e+00 1267.0
19 TraesCS2B01G607400 chr5B 96.494 770 22 4 1 767 517404949 517405716 0.000000e+00 1267.0
20 TraesCS2B01G607400 chr5B 96.494 770 20 4 1 767 29568017 29568782 0.000000e+00 1266.0
21 TraesCS2B01G607400 chr5B 93.919 296 16 1 2571 2864 254822733 254822438 2.120000e-121 446.0
22 TraesCS2B01G607400 chr6B 97.017 771 14 6 1 768 712337923 712337159 0.000000e+00 1288.0
23 TraesCS2B01G607400 chr6B 96.766 773 20 4 1 768 711656283 711655511 0.000000e+00 1284.0
24 TraesCS2B01G607400 chr6B 81.061 132 20 5 2869 2997 683956463 683956334 1.900000e-17 100.0
25 TraesCS2B01G607400 chrUn 97.013 770 12 7 1 767 53744210 53744971 0.000000e+00 1284.0
26 TraesCS2B01G607400 chrUn 80.000 360 56 8 1635 1987 12891412 12891762 4.960000e-63 252.0
27 TraesCS2B01G607400 chr3B 96.774 775 11 8 1 772 8790499 8791262 0.000000e+00 1280.0
28 TraesCS2B01G607400 chr3B 89.024 82 7 2 2871 2951 79207516 79207596 1.900000e-17 100.0
29 TraesCS2B01G607400 chr3B 79.845 129 21 5 2873 2997 191191914 191192041 4.110000e-14 89.8
30 TraesCS2B01G607400 chr7B 96.757 771 17 6 1 768 641139161 641138396 0.000000e+00 1279.0
31 TraesCS2B01G607400 chr7B 94.483 290 14 1 2571 2858 463017509 463017798 2.120000e-121 446.0
32 TraesCS2B01G607400 chr7B 94.218 294 14 2 2567 2858 483392735 483393027 2.120000e-121 446.0
33 TraesCS2B01G607400 chr6D 93.581 296 17 1 2571 2864 373577795 373577500 9.860000e-120 440.0
34 TraesCS2B01G607400 chr4D 93.581 296 17 1 2571 2864 458447330 458447035 9.860000e-120 440.0
35 TraesCS2B01G607400 chr4B 93.023 301 17 3 2560 2858 621443569 621443867 1.280000e-118 436.0
36 TraesCS2B01G607400 chr5A 85.714 91 12 1 2866 2955 667026860 667026950 8.840000e-16 95.3
37 TraesCS2B01G607400 chr1B 86.747 83 9 1 2871 2951 63479052 63478970 1.140000e-14 91.6
38 TraesCS2B01G607400 chr1B 79.508 122 21 4 2879 2997 294608715 294608595 1.910000e-12 84.2
39 TraesCS2B01G607400 chr5D 80.328 122 20 4 2879 2997 451541685 451541565 4.110000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G607400 chr2B 788003332 788006328 2996 False 2514.500000 3747 100.00000 1 2997 2 chr2B.!!$F1 2996
1 TraesCS2B01G607400 chr2D 647813628 647815189 1561 True 848.500000 1469 86.35750 766 2533 2 chr2D.!!$R2 1767
2 TraesCS2B01G607400 chr2D 33874361 33875370 1009 True 645.000000 645 78.91700 992 1988 1 chr2D.!!$R1 996
3 TraesCS2B01G607400 chr2A 772655107 772657741 2634 False 611.333333 1314 87.26100 766 2448 3 chr2A.!!$F2 1682
4 TraesCS2B01G607400 chr2A 772662982 772664713 1731 False 472.750000 1219 87.48575 766 2997 4 chr2A.!!$F3 2231
5 TraesCS2B01G607400 chr5B 163986976 163987749 773 False 1290.000000 1290 96.89900 1 767 1 chr5B.!!$F2 766
6 TraesCS2B01G607400 chr5B 164005597 164006369 772 False 1267.000000 1267 96.37800 1 767 1 chr5B.!!$F3 766
7 TraesCS2B01G607400 chr5B 517404949 517405716 767 False 1267.000000 1267 96.49400 1 767 1 chr5B.!!$F4 766
8 TraesCS2B01G607400 chr5B 29568017 29568782 765 False 1266.000000 1266 96.49400 1 767 1 chr5B.!!$F1 766
9 TraesCS2B01G607400 chr6B 712337159 712337923 764 True 1288.000000 1288 97.01700 1 768 1 chr6B.!!$R3 767
10 TraesCS2B01G607400 chr6B 711655511 711656283 772 True 1284.000000 1284 96.76600 1 768 1 chr6B.!!$R2 767
11 TraesCS2B01G607400 chrUn 53744210 53744971 761 False 1284.000000 1284 97.01300 1 767 1 chrUn.!!$F2 766
12 TraesCS2B01G607400 chr3B 8790499 8791262 763 False 1280.000000 1280 96.77400 1 772 1 chr3B.!!$F1 771
13 TraesCS2B01G607400 chr7B 641138396 641139161 765 True 1279.000000 1279 96.75700 1 768 1 chr7B.!!$R1 767

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
990 1679 1.007271 CGACGTCCTTCACTGCACT 60.007 57.895 10.58 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2563 3338 0.248949 GACGGAGGGAGTAACATCGC 60.249 60.0 0.0 0.0 0.0 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
564 578 6.985188 AAGATGGATATGTGTGTGTGTTAC 57.015 37.500 0.00 0.00 0.00 2.50
579 601 4.394920 GTGTGTTACAGAGAGAGAGAGAGG 59.605 50.000 0.00 0.00 0.00 3.69
804 1427 2.891191 AGGGGTTCCGCTGAATTAAA 57.109 45.000 7.61 0.00 38.33 1.52
843 1468 5.120830 CGAATCAGTCTTGAGAAACGGAATT 59.879 40.000 0.00 0.00 36.61 2.17
990 1679 1.007271 CGACGTCCTTCACTGCACT 60.007 57.895 10.58 0.00 0.00 4.40
1017 1706 2.422832 GAGCATGGCTTCTTCTTCCTTG 59.577 50.000 0.00 0.00 39.88 3.61
1062 1754 1.271127 GCTGGCTCCTCCTCCTTTCT 61.271 60.000 0.00 0.00 35.26 2.52
1185 1899 1.202234 ACGTCGATGATGAGAGTGCAG 60.202 52.381 12.58 0.00 0.00 4.41
1204 1918 0.523072 GTGCATGCAGGATTGAACGT 59.477 50.000 23.41 0.00 0.00 3.99
1212 1931 2.412089 GCAGGATTGAACGTGTCTACAC 59.588 50.000 3.08 3.08 43.15 2.90
1252 1991 0.039617 TGTAACAACGCAAGCATGGC 60.040 50.000 0.00 0.00 45.62 4.40
1345 2084 1.154205 CGTTCTCCGCCATGATCACC 61.154 60.000 0.00 0.00 0.00 4.02
1410 2149 3.733077 GCTTGCTATCAGGTGAAATGCAC 60.733 47.826 0.00 0.00 46.98 4.57
1506 2245 3.948719 GGCCACCCACTTCGACCA 61.949 66.667 0.00 0.00 0.00 4.02
1558 2297 3.712907 GGCCAGGCCGACAACCTA 61.713 66.667 17.05 0.00 39.62 3.08
1598 2337 4.040706 TCAAAGTCCAGTACAACCGGTAAT 59.959 41.667 8.00 0.49 32.72 1.89
1599 2338 4.628963 AAGTCCAGTACAACCGGTAATT 57.371 40.909 8.00 0.00 32.72 1.40
1600 2339 5.743636 AAGTCCAGTACAACCGGTAATTA 57.256 39.130 8.00 0.00 32.72 1.40
1601 2340 5.743636 AGTCCAGTACAACCGGTAATTAA 57.256 39.130 8.00 0.00 32.72 1.40
1614 2353 2.158943 GGTAATTAAGCTCGAGCCCAGT 60.159 50.000 32.94 18.51 43.38 4.00
1615 2354 2.029838 AATTAAGCTCGAGCCCAGTG 57.970 50.000 32.94 0.00 43.38 3.66
1616 2355 0.462759 ATTAAGCTCGAGCCCAGTGC 60.463 55.000 32.94 8.23 43.38 4.40
1617 2356 1.826340 TTAAGCTCGAGCCCAGTGCA 61.826 55.000 32.94 8.29 44.83 4.57
1653 2411 2.223618 TGCGATTCATGCATCCATTGTG 60.224 45.455 0.00 0.00 37.44 3.33
1681 2439 1.665679 TGAATGATTTCTTCGCTCGCC 59.334 47.619 0.00 0.00 32.78 5.54
1682 2440 1.936547 GAATGATTTCTTCGCTCGCCT 59.063 47.619 0.00 0.00 0.00 5.52
1683 2441 2.029838 ATGATTTCTTCGCTCGCCTT 57.970 45.000 0.00 0.00 0.00 4.35
1811 2575 4.504916 CGGTCGAGCTCCAGCAGG 62.505 72.222 13.48 0.00 45.16 4.85
1918 2682 4.147449 CGCATCACCTCCGGCTCA 62.147 66.667 0.00 0.00 0.00 4.26
1930 2694 2.664081 CGGCTCAGGGAGGAAGCTT 61.664 63.158 0.00 0.00 0.00 3.74
1933 2697 0.037447 GCTCAGGGAGGAAGCTTGTT 59.963 55.000 2.10 0.00 0.00 2.83
2018 2783 6.227298 AGTTAGTGATTCATCCGATCTGTT 57.773 37.500 0.00 0.00 0.00 3.16
2355 3120 7.822334 TGATCGACCTTGATTTGTAATAGTTGT 59.178 33.333 0.00 0.00 0.00 3.32
2401 3166 7.990541 TGCATGTTTGAAATATTATGAGCAC 57.009 32.000 0.00 0.00 0.00 4.40
2418 3187 6.291648 TGAGCACTAGAATTCTTGATCTGT 57.708 37.500 21.42 6.13 0.00 3.41
2419 3188 6.104665 TGAGCACTAGAATTCTTGATCTGTG 58.895 40.000 21.42 16.14 32.62 3.66
2425 3194 5.113446 AGAATTCTTGATCTGTGCTGGAT 57.887 39.130 0.88 0.00 0.00 3.41
2444 3213 8.443176 TGCTGGATATCTTCCTAATTTCAAGAT 58.557 33.333 2.05 9.77 45.68 2.40
2477 3246 8.955061 ATATTTGTGTTCTTCAATCTTTCGTG 57.045 30.769 0.00 0.00 0.00 4.35
2487 3262 9.611284 TTCTTCAATCTTTCGTGATTTATGTTG 57.389 29.630 0.00 0.00 34.77 3.33
2488 3263 8.998377 TCTTCAATCTTTCGTGATTTATGTTGA 58.002 29.630 0.00 0.00 34.77 3.18
2490 3265 9.611284 TTCAATCTTTCGTGATTTATGTTGAAG 57.389 29.630 0.00 0.00 34.77 3.02
2492 3267 9.778993 CAATCTTTCGTGATTTATGTTGAAGAT 57.221 29.630 0.00 0.00 34.77 2.40
2493 3268 9.994432 AATCTTTCGTGATTTATGTTGAAGATC 57.006 29.630 0.00 0.00 33.33 2.75
2494 3269 8.546597 TCTTTCGTGATTTATGTTGAAGATCA 57.453 30.769 0.00 0.00 0.00 2.92
2495 3270 8.443160 TCTTTCGTGATTTATGTTGAAGATCAC 58.557 33.333 0.00 0.00 41.80 3.06
2499 3274 7.060600 GTGATTTATGTTGAAGATCACGACA 57.939 36.000 12.97 12.97 37.80 4.35
2500 3275 6.955963 GTGATTTATGTTGAAGATCACGACAC 59.044 38.462 12.89 0.00 37.80 3.67
2502 3277 3.685139 ATGTTGAAGATCACGACACCT 57.315 42.857 12.89 0.02 34.98 4.00
2518 3293 7.015289 CACGACACCTTGTAAATATTTCACTG 58.985 38.462 3.39 2.20 0.00 3.66
2523 3298 8.567948 ACACCTTGTAAATATTTCACTGAACTG 58.432 33.333 3.39 0.00 0.00 3.16
2563 3338 9.667107 TCCAAGTAACTAATATCAACTGGAAAG 57.333 33.333 0.00 0.00 0.00 2.62
2564 3339 8.398665 CCAAGTAACTAATATCAACTGGAAAGC 58.601 37.037 0.00 0.00 0.00 3.51
2571 3346 7.985184 ACTAATATCAACTGGAAAGCGATGTTA 59.015 33.333 0.00 0.00 0.00 2.41
2572 3347 4.946784 ATCAACTGGAAAGCGATGTTAC 57.053 40.909 0.00 0.00 0.00 2.50
2573 3348 4.002906 TCAACTGGAAAGCGATGTTACT 57.997 40.909 0.00 0.00 0.00 2.24
2574 3349 3.994392 TCAACTGGAAAGCGATGTTACTC 59.006 43.478 0.00 0.00 0.00 2.59
2575 3350 2.973945 ACTGGAAAGCGATGTTACTCC 58.026 47.619 0.00 0.00 0.00 3.85
2576 3351 2.280628 CTGGAAAGCGATGTTACTCCC 58.719 52.381 0.00 0.00 0.00 4.30
2577 3352 1.906574 TGGAAAGCGATGTTACTCCCT 59.093 47.619 0.00 0.00 0.00 4.20
2578 3353 2.093658 TGGAAAGCGATGTTACTCCCTC 60.094 50.000 0.00 0.00 0.00 4.30
2579 3354 2.552031 GAAAGCGATGTTACTCCCTCC 58.448 52.381 0.00 0.00 0.00 4.30
2580 3355 0.460311 AAGCGATGTTACTCCCTCCG 59.540 55.000 0.00 0.00 0.00 4.63
2581 3356 0.683504 AGCGATGTTACTCCCTCCGT 60.684 55.000 0.00 0.00 0.00 4.69
2582 3357 0.248949 GCGATGTTACTCCCTCCGTC 60.249 60.000 0.00 0.00 0.00 4.79
2583 3358 1.390565 CGATGTTACTCCCTCCGTCT 58.609 55.000 0.00 0.00 0.00 4.18
2584 3359 2.569059 CGATGTTACTCCCTCCGTCTA 58.431 52.381 0.00 0.00 0.00 2.59
2585 3360 2.548904 CGATGTTACTCCCTCCGTCTAG 59.451 54.545 0.00 0.00 0.00 2.43
2586 3361 2.431954 TGTTACTCCCTCCGTCTAGG 57.568 55.000 0.00 0.00 42.97 3.02
2587 3362 1.637553 TGTTACTCCCTCCGTCTAGGT 59.362 52.381 0.00 0.00 41.99 3.08
2588 3363 2.022934 GTTACTCCCTCCGTCTAGGTG 58.977 57.143 0.00 0.00 41.99 4.00
2589 3364 1.293062 TACTCCCTCCGTCTAGGTGT 58.707 55.000 0.00 0.00 41.99 4.16
2590 3365 0.323542 ACTCCCTCCGTCTAGGTGTG 60.324 60.000 0.00 0.00 41.99 3.82
2591 3366 0.323542 CTCCCTCCGTCTAGGTGTGT 60.324 60.000 0.00 0.00 41.99 3.72
2592 3367 0.994247 TCCCTCCGTCTAGGTGTGTA 59.006 55.000 0.00 0.00 41.99 2.90
2593 3368 1.355381 TCCCTCCGTCTAGGTGTGTAA 59.645 52.381 0.00 0.00 41.99 2.41
2594 3369 1.749634 CCCTCCGTCTAGGTGTGTAAG 59.250 57.143 0.00 0.00 41.99 2.34
2595 3370 2.444421 CCTCCGTCTAGGTGTGTAAGT 58.556 52.381 0.00 0.00 41.99 2.24
2596 3371 2.422832 CCTCCGTCTAGGTGTGTAAGTC 59.577 54.545 0.00 0.00 41.99 3.01
2597 3372 3.079578 CTCCGTCTAGGTGTGTAAGTCA 58.920 50.000 0.00 0.00 41.99 3.41
2598 3373 3.693807 TCCGTCTAGGTGTGTAAGTCAT 58.306 45.455 0.00 0.00 41.99 3.06
2599 3374 4.084287 TCCGTCTAGGTGTGTAAGTCATT 58.916 43.478 0.00 0.00 41.99 2.57
2600 3375 4.525487 TCCGTCTAGGTGTGTAAGTCATTT 59.475 41.667 0.00 0.00 41.99 2.32
2601 3376 5.011329 TCCGTCTAGGTGTGTAAGTCATTTT 59.989 40.000 0.00 0.00 41.99 1.82
2602 3377 6.209192 TCCGTCTAGGTGTGTAAGTCATTTTA 59.791 38.462 0.00 0.00 41.99 1.52
2603 3378 6.309737 CCGTCTAGGTGTGTAAGTCATTTTAC 59.690 42.308 0.00 0.00 33.42 2.01
2604 3379 6.864685 CGTCTAGGTGTGTAAGTCATTTTACA 59.135 38.462 0.00 0.00 40.28 2.41
2605 3380 7.383029 CGTCTAGGTGTGTAAGTCATTTTACAA 59.617 37.037 0.64 0.00 43.11 2.41
2606 3381 9.048446 GTCTAGGTGTGTAAGTCATTTTACAAA 57.952 33.333 0.64 0.00 43.11 2.83
2607 3382 9.616156 TCTAGGTGTGTAAGTCATTTTACAAAA 57.384 29.630 0.64 0.00 43.11 2.44
2609 3384 8.920509 AGGTGTGTAAGTCATTTTACAAAAAC 57.079 30.769 0.64 1.38 43.11 2.43
2610 3385 7.977293 AGGTGTGTAAGTCATTTTACAAAAACC 59.023 33.333 13.41 13.41 43.11 3.27
2611 3386 7.760340 GGTGTGTAAGTCATTTTACAAAAACCA 59.240 33.333 14.98 3.58 43.11 3.67
2612 3387 9.141400 GTGTGTAAGTCATTTTACAAAAACCAA 57.859 29.630 0.64 0.00 43.11 3.67
2613 3388 9.706691 TGTGTAAGTCATTTTACAAAAACCAAA 57.293 25.926 0.64 0.00 43.11 3.28
2626 3401 9.681062 TTACAAAAACCAAATAATCCCAAAACA 57.319 25.926 0.00 0.00 0.00 2.83
2627 3402 7.990917 ACAAAAACCAAATAATCCCAAAACAC 58.009 30.769 0.00 0.00 0.00 3.32
2628 3403 7.831690 ACAAAAACCAAATAATCCCAAAACACT 59.168 29.630 0.00 0.00 0.00 3.55
2629 3404 8.681806 CAAAAACCAAATAATCCCAAAACACTT 58.318 29.630 0.00 0.00 0.00 3.16
2630 3405 9.907229 AAAAACCAAATAATCCCAAAACACTTA 57.093 25.926 0.00 0.00 0.00 2.24
2631 3406 9.554395 AAAACCAAATAATCCCAAAACACTTAG 57.446 29.630 0.00 0.00 0.00 2.18
2632 3407 7.239763 ACCAAATAATCCCAAAACACTTAGG 57.760 36.000 0.00 0.00 0.00 2.69
2633 3408 6.106003 CCAAATAATCCCAAAACACTTAGGC 58.894 40.000 0.00 0.00 0.00 3.93
2634 3409 5.576447 AATAATCCCAAAACACTTAGGCG 57.424 39.130 0.00 0.00 0.00 5.52
2635 3410 2.579410 ATCCCAAAACACTTAGGCGT 57.421 45.000 0.00 0.00 0.00 5.68
2636 3411 1.600023 TCCCAAAACACTTAGGCGTG 58.400 50.000 0.00 0.00 40.67 5.34
2637 3412 0.596082 CCCAAAACACTTAGGCGTGG 59.404 55.000 0.00 0.00 39.19 4.94
2638 3413 1.314730 CCAAAACACTTAGGCGTGGT 58.685 50.000 0.00 0.00 39.19 4.16
2639 3414 1.001815 CCAAAACACTTAGGCGTGGTG 60.002 52.381 11.07 11.07 39.19 4.17
2640 3415 0.666374 AAAACACTTAGGCGTGGTGC 59.334 50.000 12.12 0.00 45.38 5.01
2652 3427 3.385079 GCGTGGTGCATTAACTTCTAC 57.615 47.619 0.00 0.00 45.45 2.59
2653 3428 2.095372 GCGTGGTGCATTAACTTCTACC 59.905 50.000 0.00 0.00 45.45 3.18
2654 3429 3.596214 CGTGGTGCATTAACTTCTACCT 58.404 45.455 0.00 0.00 0.00 3.08
2655 3430 3.617263 CGTGGTGCATTAACTTCTACCTC 59.383 47.826 0.00 0.00 0.00 3.85
2656 3431 3.617263 GTGGTGCATTAACTTCTACCTCG 59.383 47.826 0.00 0.00 0.00 4.63
2657 3432 3.259876 TGGTGCATTAACTTCTACCTCGT 59.740 43.478 0.00 0.00 0.00 4.18
2658 3433 4.251268 GGTGCATTAACTTCTACCTCGTT 58.749 43.478 0.00 0.00 0.00 3.85
2659 3434 4.694037 GGTGCATTAACTTCTACCTCGTTT 59.306 41.667 0.00 0.00 0.00 3.60
2660 3435 5.163884 GGTGCATTAACTTCTACCTCGTTTC 60.164 44.000 0.00 0.00 0.00 2.78
2661 3436 4.624024 TGCATTAACTTCTACCTCGTTTCG 59.376 41.667 0.00 0.00 0.00 3.46
2662 3437 4.624452 GCATTAACTTCTACCTCGTTTCGT 59.376 41.667 0.00 0.00 0.00 3.85
2663 3438 5.444218 GCATTAACTTCTACCTCGTTTCGTG 60.444 44.000 0.00 0.00 0.00 4.35
2664 3439 3.722728 AACTTCTACCTCGTTTCGTGT 57.277 42.857 0.00 0.00 0.00 4.49
2665 3440 3.722728 ACTTCTACCTCGTTTCGTGTT 57.277 42.857 0.00 0.00 0.00 3.32
2666 3441 4.050852 ACTTCTACCTCGTTTCGTGTTT 57.949 40.909 0.00 0.00 0.00 2.83
2667 3442 4.047142 ACTTCTACCTCGTTTCGTGTTTC 58.953 43.478 0.00 0.00 0.00 2.78
2668 3443 3.996150 TCTACCTCGTTTCGTGTTTCT 57.004 42.857 0.00 0.00 0.00 2.52
2669 3444 4.311816 TCTACCTCGTTTCGTGTTTCTT 57.688 40.909 0.00 0.00 0.00 2.52
2670 3445 4.046462 TCTACCTCGTTTCGTGTTTCTTG 58.954 43.478 0.00 0.00 0.00 3.02
2671 3446 2.896168 ACCTCGTTTCGTGTTTCTTGA 58.104 42.857 0.00 0.00 0.00 3.02
2672 3447 2.606272 ACCTCGTTTCGTGTTTCTTGAC 59.394 45.455 0.00 0.00 0.00 3.18
2673 3448 2.605818 CCTCGTTTCGTGTTTCTTGACA 59.394 45.455 0.00 0.00 0.00 3.58
2674 3449 3.247648 CCTCGTTTCGTGTTTCTTGACAT 59.752 43.478 0.00 0.00 0.00 3.06
2675 3450 4.446385 CCTCGTTTCGTGTTTCTTGACATA 59.554 41.667 0.00 0.00 0.00 2.29
2676 3451 5.120208 CCTCGTTTCGTGTTTCTTGACATAT 59.880 40.000 0.00 0.00 0.00 1.78
2677 3452 6.148270 TCGTTTCGTGTTTCTTGACATATC 57.852 37.500 0.00 0.00 0.00 1.63
2678 3453 5.692654 TCGTTTCGTGTTTCTTGACATATCA 59.307 36.000 0.00 0.00 0.00 2.15
2679 3454 6.201234 TCGTTTCGTGTTTCTTGACATATCAA 59.799 34.615 0.00 0.00 42.73 2.57
2680 3455 6.299966 CGTTTCGTGTTTCTTGACATATCAAC 59.700 38.462 0.00 0.00 40.01 3.18
2681 3456 5.856126 TCGTGTTTCTTGACATATCAACC 57.144 39.130 0.00 0.00 40.01 3.77
2682 3457 5.301555 TCGTGTTTCTTGACATATCAACCA 58.698 37.500 0.00 0.00 40.01 3.67
2683 3458 5.760743 TCGTGTTTCTTGACATATCAACCAA 59.239 36.000 0.00 0.00 40.01 3.67
2684 3459 6.429692 TCGTGTTTCTTGACATATCAACCAAT 59.570 34.615 0.00 0.00 40.01 3.16
2685 3460 7.604545 TCGTGTTTCTTGACATATCAACCAATA 59.395 33.333 0.00 0.00 40.01 1.90
2686 3461 8.233868 CGTGTTTCTTGACATATCAACCAATAA 58.766 33.333 0.00 0.00 40.01 1.40
2687 3462 9.559958 GTGTTTCTTGACATATCAACCAATAAG 57.440 33.333 0.00 0.00 40.01 1.73
2688 3463 9.513906 TGTTTCTTGACATATCAACCAATAAGA 57.486 29.630 0.00 0.00 40.01 2.10
2689 3464 9.994432 GTTTCTTGACATATCAACCAATAAGAG 57.006 33.333 0.00 0.00 40.01 2.85
2690 3465 9.958180 TTTCTTGACATATCAACCAATAAGAGA 57.042 29.630 0.00 0.00 40.01 3.10
2692 3467 9.551734 TCTTGACATATCAACCAATAAGAGATG 57.448 33.333 0.00 0.00 40.01 2.90
2693 3468 9.551734 CTTGACATATCAACCAATAAGAGATGA 57.448 33.333 0.00 0.00 40.01 2.92
2694 3469 9.551734 TTGACATATCAACCAATAAGAGATGAG 57.448 33.333 0.00 0.00 40.01 2.90
2695 3470 8.152898 TGACATATCAACCAATAAGAGATGAGG 58.847 37.037 0.00 0.00 35.26 3.86
2696 3471 7.456725 ACATATCAACCAATAAGAGATGAGGG 58.543 38.462 0.00 0.00 35.26 4.30
2697 3472 4.778213 TCAACCAATAAGAGATGAGGGG 57.222 45.455 0.00 0.00 0.00 4.79
2698 3473 4.111577 TCAACCAATAAGAGATGAGGGGT 58.888 43.478 0.00 0.00 0.00 4.95
2699 3474 4.080356 TCAACCAATAAGAGATGAGGGGTG 60.080 45.833 0.00 0.00 32.98 4.61
2700 3475 3.464828 ACCAATAAGAGATGAGGGGTGT 58.535 45.455 0.00 0.00 0.00 4.16
2701 3476 3.200825 ACCAATAAGAGATGAGGGGTGTG 59.799 47.826 0.00 0.00 0.00 3.82
2702 3477 3.209410 CAATAAGAGATGAGGGGTGTGC 58.791 50.000 0.00 0.00 0.00 4.57
2703 3478 1.951209 TAAGAGATGAGGGGTGTGCA 58.049 50.000 0.00 0.00 0.00 4.57
2704 3479 1.293062 AAGAGATGAGGGGTGTGCAT 58.707 50.000 0.00 0.00 0.00 3.96
2705 3480 0.545171 AGAGATGAGGGGTGTGCATG 59.455 55.000 0.00 0.00 0.00 4.06
2706 3481 1.077212 AGATGAGGGGTGTGCATGC 60.077 57.895 11.82 11.82 0.00 4.06
2707 3482 1.077212 GATGAGGGGTGTGCATGCT 60.077 57.895 20.33 0.00 0.00 3.79
2708 3483 0.682209 GATGAGGGGTGTGCATGCTT 60.682 55.000 20.33 0.00 0.00 3.91
2709 3484 0.251922 ATGAGGGGTGTGCATGCTTT 60.252 50.000 20.33 0.00 0.00 3.51
2710 3485 0.469705 TGAGGGGTGTGCATGCTTTT 60.470 50.000 20.33 0.00 0.00 2.27
2711 3486 1.202989 TGAGGGGTGTGCATGCTTTTA 60.203 47.619 20.33 0.00 0.00 1.52
2712 3487 1.892474 GAGGGGTGTGCATGCTTTTAA 59.108 47.619 20.33 0.00 0.00 1.52
2713 3488 2.497273 GAGGGGTGTGCATGCTTTTAAT 59.503 45.455 20.33 0.00 0.00 1.40
2714 3489 3.699038 GAGGGGTGTGCATGCTTTTAATA 59.301 43.478 20.33 0.00 0.00 0.98
2715 3490 4.093011 AGGGGTGTGCATGCTTTTAATAA 58.907 39.130 20.33 0.00 0.00 1.40
2716 3491 4.081697 AGGGGTGTGCATGCTTTTAATAAC 60.082 41.667 20.33 6.41 0.00 1.89
2717 3492 4.081697 GGGGTGTGCATGCTTTTAATAACT 60.082 41.667 20.33 0.00 0.00 2.24
2718 3493 5.478407 GGGTGTGCATGCTTTTAATAACTT 58.522 37.500 20.33 0.00 0.00 2.66
2719 3494 5.348451 GGGTGTGCATGCTTTTAATAACTTG 59.652 40.000 20.33 0.00 0.00 3.16
2720 3495 6.155827 GGTGTGCATGCTTTTAATAACTTGA 58.844 36.000 20.33 0.00 0.00 3.02
2721 3496 6.308766 GGTGTGCATGCTTTTAATAACTTGAG 59.691 38.462 20.33 0.00 0.00 3.02
2722 3497 7.083858 GTGTGCATGCTTTTAATAACTTGAGA 58.916 34.615 20.33 0.00 0.00 3.27
2723 3498 7.061094 GTGTGCATGCTTTTAATAACTTGAGAC 59.939 37.037 20.33 2.56 0.00 3.36
2724 3499 7.040478 TGTGCATGCTTTTAATAACTTGAGACT 60.040 33.333 20.33 0.00 0.00 3.24
2725 3500 8.450964 GTGCATGCTTTTAATAACTTGAGACTA 58.549 33.333 20.33 0.00 0.00 2.59
2726 3501 8.450964 TGCATGCTTTTAATAACTTGAGACTAC 58.549 33.333 20.33 0.00 0.00 2.73
2727 3502 7.910683 GCATGCTTTTAATAACTTGAGACTACC 59.089 37.037 11.37 0.00 0.00 3.18
2728 3503 8.946085 CATGCTTTTAATAACTTGAGACTACCA 58.054 33.333 0.00 0.00 0.00 3.25
2729 3504 8.911918 TGCTTTTAATAACTTGAGACTACCAA 57.088 30.769 0.00 0.00 0.00 3.67
2730 3505 9.344772 TGCTTTTAATAACTTGAGACTACCAAA 57.655 29.630 0.00 0.00 0.00 3.28
2731 3506 9.608617 GCTTTTAATAACTTGAGACTACCAAAC 57.391 33.333 0.00 0.00 0.00 2.93
2732 3507 9.807386 CTTTTAATAACTTGAGACTACCAAACG 57.193 33.333 0.00 0.00 0.00 3.60
2733 3508 5.857822 AATAACTTGAGACTACCAAACGC 57.142 39.130 0.00 0.00 0.00 4.84
2734 3509 2.902705 ACTTGAGACTACCAAACGCA 57.097 45.000 0.00 0.00 0.00 5.24
2735 3510 3.188159 ACTTGAGACTACCAAACGCAA 57.812 42.857 0.00 0.00 0.00 4.85
2736 3511 2.870411 ACTTGAGACTACCAAACGCAAC 59.130 45.455 0.00 0.00 0.00 4.17
2737 3512 2.605837 TGAGACTACCAAACGCAACA 57.394 45.000 0.00 0.00 0.00 3.33
2738 3513 3.120321 TGAGACTACCAAACGCAACAT 57.880 42.857 0.00 0.00 0.00 2.71
2739 3514 2.805671 TGAGACTACCAAACGCAACATG 59.194 45.455 0.00 0.00 0.00 3.21
2740 3515 1.535462 AGACTACCAAACGCAACATGC 59.465 47.619 0.00 0.00 40.69 4.06
2741 3516 1.265635 GACTACCAAACGCAACATGCA 59.734 47.619 2.99 0.00 45.36 3.96
2742 3517 1.266718 ACTACCAAACGCAACATGCAG 59.733 47.619 2.99 0.00 45.36 4.41
2743 3518 1.266718 CTACCAAACGCAACATGCAGT 59.733 47.619 2.99 0.00 45.36 4.40
2744 3519 0.248990 ACCAAACGCAACATGCAGTG 60.249 50.000 2.99 0.00 45.36 3.66
2745 3520 0.940519 CCAAACGCAACATGCAGTGG 60.941 55.000 2.99 2.83 45.36 4.00
2746 3521 0.248990 CAAACGCAACATGCAGTGGT 60.249 50.000 2.99 0.00 45.36 4.16
2747 3522 0.459489 AAACGCAACATGCAGTGGTT 59.541 45.000 2.99 0.00 45.36 3.67
2748 3523 1.313772 AACGCAACATGCAGTGGTTA 58.686 45.000 2.99 0.00 45.36 2.85
2749 3524 0.874390 ACGCAACATGCAGTGGTTAG 59.126 50.000 2.99 0.00 45.36 2.34
2750 3525 0.874390 CGCAACATGCAGTGGTTAGT 59.126 50.000 2.99 0.00 45.36 2.24
2751 3526 1.266718 CGCAACATGCAGTGGTTAGTT 59.733 47.619 2.99 0.00 45.36 2.24
2752 3527 2.665519 CGCAACATGCAGTGGTTAGTTC 60.666 50.000 2.99 0.00 45.36 3.01
2753 3528 2.293122 GCAACATGCAGTGGTTAGTTCA 59.707 45.455 0.00 0.00 44.26 3.18
2754 3529 3.057315 GCAACATGCAGTGGTTAGTTCAT 60.057 43.478 0.00 0.00 44.26 2.57
2755 3530 4.559300 GCAACATGCAGTGGTTAGTTCATT 60.559 41.667 0.00 0.00 44.26 2.57
2756 3531 4.771590 ACATGCAGTGGTTAGTTCATTG 57.228 40.909 0.00 0.00 0.00 2.82
2757 3532 3.057315 ACATGCAGTGGTTAGTTCATTGC 60.057 43.478 0.00 4.92 44.56 3.56
2759 3534 3.855689 GCAGTGGTTAGTTCATTGCAT 57.144 42.857 6.68 0.00 44.01 3.96
2760 3535 3.504863 GCAGTGGTTAGTTCATTGCATG 58.495 45.455 6.68 0.00 44.01 4.06
2761 3536 3.504863 CAGTGGTTAGTTCATTGCATGC 58.495 45.455 11.82 11.82 0.00 4.06
2762 3537 3.057386 CAGTGGTTAGTTCATTGCATGCA 60.057 43.478 18.46 18.46 0.00 3.96
2763 3538 3.573538 AGTGGTTAGTTCATTGCATGCAA 59.426 39.130 33.57 33.57 40.47 4.08
2764 3539 4.221262 AGTGGTTAGTTCATTGCATGCAAT 59.779 37.500 34.78 34.78 46.35 3.56
2805 3580 7.511959 AACATTAAGGTCTCTTGTTTTCTCC 57.488 36.000 0.00 0.00 34.59 3.71
2806 3581 6.842676 ACATTAAGGTCTCTTGTTTTCTCCT 58.157 36.000 0.00 0.00 34.59 3.69
2807 3582 6.937465 ACATTAAGGTCTCTTGTTTTCTCCTC 59.063 38.462 0.00 0.00 34.59 3.71
2808 3583 4.359434 AAGGTCTCTTGTTTTCTCCTCC 57.641 45.455 0.00 0.00 0.00 4.30
2809 3584 3.592865 AGGTCTCTTGTTTTCTCCTCCT 58.407 45.455 0.00 0.00 0.00 3.69
2810 3585 3.580895 AGGTCTCTTGTTTTCTCCTCCTC 59.419 47.826 0.00 0.00 0.00 3.71
2811 3586 3.307129 GGTCTCTTGTTTTCTCCTCCTCC 60.307 52.174 0.00 0.00 0.00 4.30
2812 3587 3.580895 GTCTCTTGTTTTCTCCTCCTCCT 59.419 47.826 0.00 0.00 0.00 3.69
2813 3588 4.041075 GTCTCTTGTTTTCTCCTCCTCCTT 59.959 45.833 0.00 0.00 0.00 3.36
2814 3589 4.040952 TCTCTTGTTTTCTCCTCCTCCTTG 59.959 45.833 0.00 0.00 0.00 3.61
2815 3590 3.073062 TCTTGTTTTCTCCTCCTCCTTGG 59.927 47.826 0.00 0.00 37.10 3.61
2816 3591 2.418669 TGTTTTCTCCTCCTCCTTGGT 58.581 47.619 0.00 0.00 37.07 3.67
2817 3592 2.372172 TGTTTTCTCCTCCTCCTTGGTC 59.628 50.000 0.00 0.00 37.07 4.02
2818 3593 2.372172 GTTTTCTCCTCCTCCTTGGTCA 59.628 50.000 0.00 0.00 37.07 4.02
2819 3594 1.645710 TTCTCCTCCTCCTTGGTCAC 58.354 55.000 0.00 0.00 37.07 3.67
2820 3595 0.612174 TCTCCTCCTCCTTGGTCACG 60.612 60.000 0.00 0.00 37.07 4.35
2821 3596 1.608717 CTCCTCCTCCTTGGTCACGG 61.609 65.000 0.00 0.00 37.07 4.94
2822 3597 1.913762 CCTCCTCCTTGGTCACGGT 60.914 63.158 0.00 0.00 37.07 4.83
2823 3598 1.293498 CTCCTCCTTGGTCACGGTG 59.707 63.158 0.56 0.56 37.07 4.94
2824 3599 2.358737 CCTCCTTGGTCACGGTGC 60.359 66.667 2.51 0.00 0.00 5.01
2825 3600 2.425592 CTCCTTGGTCACGGTGCA 59.574 61.111 2.51 0.00 0.00 4.57
2826 3601 1.961277 CTCCTTGGTCACGGTGCAC 60.961 63.158 8.80 8.80 0.00 4.57
2827 3602 2.203139 CCTTGGTCACGGTGCACA 60.203 61.111 20.43 1.81 0.00 4.57
2828 3603 1.821759 CCTTGGTCACGGTGCACAA 60.822 57.895 20.43 9.76 0.00 3.33
2829 3604 1.355210 CTTGGTCACGGTGCACAAC 59.645 57.895 20.43 10.47 0.00 3.32
2830 3605 2.058829 CTTGGTCACGGTGCACAACC 62.059 60.000 20.43 18.91 46.60 3.77
2840 3615 3.059352 GGTGCACAACCTAAGATGACT 57.941 47.619 20.43 0.00 46.55 3.41
2841 3616 3.412386 GGTGCACAACCTAAGATGACTT 58.588 45.455 20.43 0.00 46.55 3.01
2842 3617 4.575885 GGTGCACAACCTAAGATGACTTA 58.424 43.478 20.43 0.00 46.55 2.24
2843 3618 4.392138 GGTGCACAACCTAAGATGACTTAC 59.608 45.833 20.43 0.00 46.55 2.34
2844 3619 5.238583 GTGCACAACCTAAGATGACTTACT 58.761 41.667 13.17 0.00 37.53 2.24
2845 3620 5.348997 GTGCACAACCTAAGATGACTTACTC 59.651 44.000 13.17 0.00 37.53 2.59
2846 3621 5.011635 TGCACAACCTAAGATGACTTACTCA 59.988 40.000 0.00 0.00 37.53 3.41
2847 3622 5.348997 GCACAACCTAAGATGACTTACTCAC 59.651 44.000 0.00 0.00 37.53 3.51
2848 3623 5.869888 CACAACCTAAGATGACTTACTCACC 59.130 44.000 0.00 0.00 37.53 4.02
2849 3624 5.780793 ACAACCTAAGATGACTTACTCACCT 59.219 40.000 0.00 0.00 37.53 4.00
2850 3625 6.952358 ACAACCTAAGATGACTTACTCACCTA 59.048 38.462 0.00 0.00 37.53 3.08
2851 3626 7.122948 ACAACCTAAGATGACTTACTCACCTAG 59.877 40.741 0.00 0.00 37.53 3.02
2852 3627 6.971340 ACCTAAGATGACTTACTCACCTAGA 58.029 40.000 0.00 0.00 37.53 2.43
2853 3628 6.829811 ACCTAAGATGACTTACTCACCTAGAC 59.170 42.308 0.00 0.00 37.53 2.59
2854 3629 6.829298 CCTAAGATGACTTACTCACCTAGACA 59.171 42.308 0.00 0.00 37.53 3.41
2855 3630 6.767524 AAGATGACTTACTCACCTAGACAG 57.232 41.667 0.00 0.00 34.28 3.51
2856 3631 6.068461 AGATGACTTACTCACCTAGACAGA 57.932 41.667 0.00 0.00 0.00 3.41
2857 3632 6.119536 AGATGACTTACTCACCTAGACAGAG 58.880 44.000 0.00 0.00 35.56 3.35
2858 3633 5.500546 TGACTTACTCACCTAGACAGAGA 57.499 43.478 11.42 0.00 33.69 3.10
2859 3634 5.247084 TGACTTACTCACCTAGACAGAGAC 58.753 45.833 11.42 0.00 33.69 3.36
2860 3635 5.221864 TGACTTACTCACCTAGACAGAGACA 60.222 44.000 11.42 0.00 33.69 3.41
2861 3636 5.250200 ACTTACTCACCTAGACAGAGACAG 58.750 45.833 11.42 9.01 33.69 3.51
2862 3637 3.799432 ACTCACCTAGACAGAGACAGT 57.201 47.619 11.42 0.00 33.69 3.55
2901 3676 1.003718 GGTTTGTGCCTCGGCTAGT 60.004 57.895 9.65 0.00 42.51 2.57
2903 3678 0.320421 GTTTGTGCCTCGGCTAGTCA 60.320 55.000 9.65 1.24 42.51 3.41
2904 3679 0.037326 TTTGTGCCTCGGCTAGTCAG 60.037 55.000 9.65 0.00 42.51 3.51
2905 3680 1.888436 TTGTGCCTCGGCTAGTCAGG 61.888 60.000 9.65 8.08 42.51 3.86
2938 3714 0.251297 TGACCAAAGTGAGGGCATGG 60.251 55.000 0.00 0.00 39.89 3.66
2972 3749 4.567959 GGCAAGACATAATGTTTGGATTGC 59.432 41.667 0.00 0.00 38.17 3.56
2974 3751 5.638657 GCAAGACATAATGTTTGGATTGCAA 59.361 36.000 0.00 0.00 38.48 4.08
2975 3752 6.401367 GCAAGACATAATGTTTGGATTGCAAC 60.401 38.462 0.00 0.00 38.48 4.17
2978 3755 4.285517 ACATAATGTTTGGATTGCAACCCA 59.714 37.500 9.04 9.04 0.00 4.51
2987 3764 3.073209 TGGATTGCAACCCAGTGTACTTA 59.927 43.478 9.04 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
564 578 2.105477 CCTCTCCCTCTCTCTCTCTCTG 59.895 59.091 0.00 0.00 0.00 3.35
579 601 4.179599 CCCCCTCTCCCCCTCTCC 62.180 77.778 0.00 0.00 0.00 3.71
721 746 4.429108 CAACGGGGCCACATTAAATTTAG 58.571 43.478 5.46 0.00 0.00 1.85
860 1485 7.309621 CGGACTCGGAGGGATATTTATTCTTTA 60.310 40.741 10.23 0.00 0.00 1.85
861 1486 6.518537 CGGACTCGGAGGGATATTTATTCTTT 60.519 42.308 10.23 0.00 0.00 2.52
862 1487 5.047235 CGGACTCGGAGGGATATTTATTCTT 60.047 44.000 10.23 0.00 0.00 2.52
863 1488 4.463186 CGGACTCGGAGGGATATTTATTCT 59.537 45.833 10.23 0.00 0.00 2.40
864 1489 4.745649 CGGACTCGGAGGGATATTTATTC 58.254 47.826 10.23 0.00 0.00 1.75
865 1490 3.056035 GCGGACTCGGAGGGATATTTATT 60.056 47.826 10.23 0.00 36.79 1.40
868 1493 0.680061 GCGGACTCGGAGGGATATTT 59.320 55.000 10.23 0.00 36.79 1.40
900 1534 2.843063 CGAGATCGCACGCTCATTATAG 59.157 50.000 0.00 0.00 0.00 1.31
990 1679 2.578163 AAGAAGCCATGCTCGCGCTA 62.578 55.000 5.56 0.00 38.25 4.26
1017 1706 2.494504 CTTGAGCCGCGAAAACGACC 62.495 60.000 8.23 0.00 34.06 4.79
1153 1867 2.505635 ATCGACGTGTGCATGCCTCA 62.506 55.000 16.68 11.85 0.00 3.86
1185 1899 0.523072 ACGTTCAATCCTGCATGCAC 59.477 50.000 18.46 3.18 0.00 4.57
1204 1918 7.578310 AAACAACTACTGTAGAGTGTAGACA 57.422 36.000 21.01 0.00 37.23 3.41
1238 1977 0.108992 ATTCAGCCATGCTTGCGTTG 60.109 50.000 0.00 0.00 36.40 4.10
1252 1991 2.163826 GCACATGCACGTACATTCAG 57.836 50.000 0.00 0.00 41.59 3.02
1543 2282 2.125673 CGTAGGTTGTCGGCCTGG 60.126 66.667 0.00 0.00 37.54 4.45
1598 2337 1.079127 GCACTGGGCTCGAGCTTAA 60.079 57.895 34.46 19.77 41.70 1.85
1599 2338 1.617018 ATGCACTGGGCTCGAGCTTA 61.617 55.000 34.46 22.54 45.15 3.09
1600 2339 2.964310 ATGCACTGGGCTCGAGCTT 61.964 57.895 34.46 15.39 45.15 3.74
1601 2340 3.397439 ATGCACTGGGCTCGAGCT 61.397 61.111 34.46 14.35 45.15 4.09
1614 2353 1.596752 ACGAACCACGAAGCATGCA 60.597 52.632 21.98 0.00 45.77 3.96
1615 2354 1.154413 CACGAACCACGAAGCATGC 60.154 57.895 10.51 10.51 45.77 4.06
1616 2355 1.154413 GCACGAACCACGAAGCATG 60.154 57.895 0.00 0.00 45.77 4.06
1617 2356 2.667318 CGCACGAACCACGAAGCAT 61.667 57.895 0.00 0.00 45.77 3.79
1653 2411 7.014092 AGCGAAGAAATCATTCAAAGAGATC 57.986 36.000 0.00 0.00 38.06 2.75
1674 2432 2.815647 GAACCCTGAAGGCGAGCG 60.816 66.667 0.00 0.00 40.58 5.03
1681 2439 1.542915 CAGTTGCATGGAACCCTGAAG 59.457 52.381 24.50 6.24 0.00 3.02
1682 2440 1.619654 CAGTTGCATGGAACCCTGAA 58.380 50.000 24.50 0.00 0.00 3.02
1683 2441 0.251297 CCAGTTGCATGGAACCCTGA 60.251 55.000 24.50 0.00 43.57 3.86
1918 2682 1.075659 GGCAACAAGCTTCCTCCCT 59.924 57.895 0.00 0.00 44.79 4.20
1933 2697 2.033448 GGGATGACGTTGGTGGCA 59.967 61.111 0.00 0.00 0.00 4.92
1963 2727 0.978146 ATCGGTAGGTCTTGCCAGCT 60.978 55.000 0.00 0.00 40.61 4.24
2321 3086 1.960689 TCAAGGTCGATCACACAGTGA 59.039 47.619 7.81 3.74 46.90 3.41
2394 3159 6.762187 CACAGATCAAGAATTCTAGTGCTCAT 59.238 38.462 8.75 0.00 0.00 2.90
2401 3166 5.668471 TCCAGCACAGATCAAGAATTCTAG 58.332 41.667 8.75 0.00 0.00 2.43
2455 3224 6.429791 TCACGAAAGATTGAAGAACACAAA 57.570 33.333 0.00 0.00 0.00 2.83
2459 3228 8.783093 ACATAAATCACGAAAGATTGAAGAACA 58.217 29.630 0.00 0.00 38.21 3.18
2476 3245 6.092122 GGTGTCGTGATCTTCAACATAAATCA 59.908 38.462 0.00 0.00 0.00 2.57
2477 3246 6.313905 AGGTGTCGTGATCTTCAACATAAATC 59.686 38.462 0.00 0.00 0.00 2.17
2487 3262 7.772332 ATATTTACAAGGTGTCGTGATCTTC 57.228 36.000 0.00 0.00 0.00 2.87
2488 3263 8.561738 AAATATTTACAAGGTGTCGTGATCTT 57.438 30.769 0.00 0.00 0.00 2.40
2490 3265 7.903431 GTGAAATATTTACAAGGTGTCGTGATC 59.097 37.037 0.00 0.00 0.00 2.92
2492 3267 6.932400 AGTGAAATATTTACAAGGTGTCGTGA 59.068 34.615 0.00 0.00 0.00 4.35
2493 3268 7.015289 CAGTGAAATATTTACAAGGTGTCGTG 58.985 38.462 0.00 0.00 0.00 4.35
2494 3269 6.932400 TCAGTGAAATATTTACAAGGTGTCGT 59.068 34.615 0.00 0.00 0.00 4.34
2495 3270 7.359262 TCAGTGAAATATTTACAAGGTGTCG 57.641 36.000 0.00 0.00 0.00 4.35
2496 3271 8.784043 AGTTCAGTGAAATATTTACAAGGTGTC 58.216 33.333 7.25 0.00 0.00 3.67
2497 3272 8.567948 CAGTTCAGTGAAATATTTACAAGGTGT 58.432 33.333 7.25 0.00 0.00 4.16
2498 3273 8.023128 CCAGTTCAGTGAAATATTTACAAGGTG 58.977 37.037 7.25 1.66 0.00 4.00
2499 3274 7.724061 ACCAGTTCAGTGAAATATTTACAAGGT 59.276 33.333 7.25 4.59 0.00 3.50
2500 3275 8.110860 ACCAGTTCAGTGAAATATTTACAAGG 57.889 34.615 7.25 3.94 0.00 3.61
2543 3318 7.985184 ACATCGCTTTCCAGTTGATATTAGTTA 59.015 33.333 0.00 0.00 0.00 2.24
2546 3321 6.851222 ACATCGCTTTCCAGTTGATATTAG 57.149 37.500 0.00 0.00 0.00 1.73
2554 3329 3.335579 GGAGTAACATCGCTTTCCAGTT 58.664 45.455 0.00 0.00 0.00 3.16
2556 3331 2.093447 AGGGAGTAACATCGCTTTCCAG 60.093 50.000 0.00 0.00 39.24 3.86
2559 3334 2.552031 GGAGGGAGTAACATCGCTTTC 58.448 52.381 0.00 0.00 42.04 2.62
2563 3338 0.248949 GACGGAGGGAGTAACATCGC 60.249 60.000 0.00 0.00 0.00 4.58
2564 3339 1.390565 AGACGGAGGGAGTAACATCG 58.609 55.000 0.00 0.00 0.00 3.84
2571 3346 0.323542 CACACCTAGACGGAGGGAGT 60.324 60.000 5.42 1.31 41.36 3.85
2572 3347 0.323542 ACACACCTAGACGGAGGGAG 60.324 60.000 5.42 0.78 41.36 4.30
2573 3348 0.994247 TACACACCTAGACGGAGGGA 59.006 55.000 5.42 0.00 41.36 4.20
2574 3349 1.749634 CTTACACACCTAGACGGAGGG 59.250 57.143 5.42 0.00 41.36 4.30
2575 3350 2.422832 GACTTACACACCTAGACGGAGG 59.577 54.545 0.00 0.00 42.89 4.30
2576 3351 3.079578 TGACTTACACACCTAGACGGAG 58.920 50.000 0.00 0.00 36.31 4.63
2577 3352 3.144657 TGACTTACACACCTAGACGGA 57.855 47.619 0.00 0.00 36.31 4.69
2578 3353 4.451629 AATGACTTACACACCTAGACGG 57.548 45.455 0.00 0.00 39.35 4.79
2579 3354 6.864685 TGTAAAATGACTTACACACCTAGACG 59.135 38.462 0.00 0.00 36.97 4.18
2580 3355 8.597662 TTGTAAAATGACTTACACACCTAGAC 57.402 34.615 0.00 0.00 40.59 2.59
2581 3356 9.616156 TTTTGTAAAATGACTTACACACCTAGA 57.384 29.630 0.00 0.00 40.59 2.43
2584 3359 7.977293 GGTTTTTGTAAAATGACTTACACACCT 59.023 33.333 9.45 0.00 40.59 4.00
2585 3360 7.760340 TGGTTTTTGTAAAATGACTTACACACC 59.240 33.333 9.64 9.64 40.59 4.16
2586 3361 8.690680 TGGTTTTTGTAAAATGACTTACACAC 57.309 30.769 0.00 0.00 40.59 3.82
2587 3362 9.706691 TTTGGTTTTTGTAAAATGACTTACACA 57.293 25.926 0.00 0.00 40.59 3.72
2600 3375 9.681062 TGTTTTGGGATTATTTGGTTTTTGTAA 57.319 25.926 0.00 0.00 0.00 2.41
2601 3376 9.110502 GTGTTTTGGGATTATTTGGTTTTTGTA 57.889 29.630 0.00 0.00 0.00 2.41
2602 3377 7.831690 AGTGTTTTGGGATTATTTGGTTTTTGT 59.168 29.630 0.00 0.00 0.00 2.83
2603 3378 8.219546 AGTGTTTTGGGATTATTTGGTTTTTG 57.780 30.769 0.00 0.00 0.00 2.44
2604 3379 8.815565 AAGTGTTTTGGGATTATTTGGTTTTT 57.184 26.923 0.00 0.00 0.00 1.94
2605 3380 9.554395 CTAAGTGTTTTGGGATTATTTGGTTTT 57.446 29.630 0.00 0.00 0.00 2.43
2606 3381 8.154203 CCTAAGTGTTTTGGGATTATTTGGTTT 58.846 33.333 0.00 0.00 0.00 3.27
2607 3382 7.676004 CCTAAGTGTTTTGGGATTATTTGGTT 58.324 34.615 0.00 0.00 0.00 3.67
2608 3383 6.295632 GCCTAAGTGTTTTGGGATTATTTGGT 60.296 38.462 0.00 0.00 30.91 3.67
2609 3384 6.106003 GCCTAAGTGTTTTGGGATTATTTGG 58.894 40.000 0.00 0.00 30.91 3.28
2610 3385 5.804979 CGCCTAAGTGTTTTGGGATTATTTG 59.195 40.000 0.00 0.00 30.91 2.32
2611 3386 5.479027 ACGCCTAAGTGTTTTGGGATTATTT 59.521 36.000 0.00 0.00 30.76 1.40
2612 3387 5.014202 ACGCCTAAGTGTTTTGGGATTATT 58.986 37.500 0.00 0.00 30.76 1.40
2613 3388 4.398044 CACGCCTAAGTGTTTTGGGATTAT 59.602 41.667 0.00 0.00 37.35 1.28
2614 3389 3.754323 CACGCCTAAGTGTTTTGGGATTA 59.246 43.478 0.00 0.00 37.35 1.75
2615 3390 2.556622 CACGCCTAAGTGTTTTGGGATT 59.443 45.455 0.00 0.00 37.35 3.01
2616 3391 2.159382 CACGCCTAAGTGTTTTGGGAT 58.841 47.619 0.00 0.00 37.35 3.85
2617 3392 1.600023 CACGCCTAAGTGTTTTGGGA 58.400 50.000 0.00 0.00 37.35 4.37
2618 3393 0.596082 CCACGCCTAAGTGTTTTGGG 59.404 55.000 0.00 0.00 40.33 4.12
2619 3394 1.001815 CACCACGCCTAAGTGTTTTGG 60.002 52.381 0.00 0.00 40.33 3.28
2620 3395 1.599419 GCACCACGCCTAAGTGTTTTG 60.599 52.381 0.00 0.00 40.33 2.44
2621 3396 0.666374 GCACCACGCCTAAGTGTTTT 59.334 50.000 0.00 0.00 40.33 2.43
2622 3397 0.464735 TGCACCACGCCTAAGTGTTT 60.465 50.000 0.00 0.00 41.33 2.83
2623 3398 0.250727 ATGCACCACGCCTAAGTGTT 60.251 50.000 0.00 0.00 41.33 3.32
2624 3399 0.250727 AATGCACCACGCCTAAGTGT 60.251 50.000 0.00 0.00 41.33 3.55
2625 3400 1.732941 TAATGCACCACGCCTAAGTG 58.267 50.000 0.00 0.00 41.33 3.16
2626 3401 2.081462 GTTAATGCACCACGCCTAAGT 58.919 47.619 0.00 0.00 41.33 2.24
2627 3402 2.356135 AGTTAATGCACCACGCCTAAG 58.644 47.619 0.00 0.00 41.33 2.18
2628 3403 2.483014 AGTTAATGCACCACGCCTAA 57.517 45.000 0.00 0.00 41.33 2.69
2629 3404 2.027561 AGAAGTTAATGCACCACGCCTA 60.028 45.455 0.00 0.00 41.33 3.93
2630 3405 1.165270 GAAGTTAATGCACCACGCCT 58.835 50.000 0.00 0.00 41.33 5.52
2631 3406 1.165270 AGAAGTTAATGCACCACGCC 58.835 50.000 0.00 0.00 41.33 5.68
2632 3407 2.095372 GGTAGAAGTTAATGCACCACGC 59.905 50.000 0.00 0.00 42.89 5.34
2633 3408 3.596214 AGGTAGAAGTTAATGCACCACG 58.404 45.455 0.00 0.00 0.00 4.94
2634 3409 3.617263 CGAGGTAGAAGTTAATGCACCAC 59.383 47.826 0.00 0.00 0.00 4.16
2635 3410 3.259876 ACGAGGTAGAAGTTAATGCACCA 59.740 43.478 0.00 0.00 0.00 4.17
2636 3411 3.858247 ACGAGGTAGAAGTTAATGCACC 58.142 45.455 0.00 0.00 0.00 5.01
2637 3412 5.444218 CGAAACGAGGTAGAAGTTAATGCAC 60.444 44.000 0.00 0.00 0.00 4.57
2638 3413 4.624024 CGAAACGAGGTAGAAGTTAATGCA 59.376 41.667 0.00 0.00 0.00 3.96
2639 3414 4.624452 ACGAAACGAGGTAGAAGTTAATGC 59.376 41.667 0.00 0.00 0.00 3.56
2640 3415 5.632347 ACACGAAACGAGGTAGAAGTTAATG 59.368 40.000 0.00 0.00 0.00 1.90
2641 3416 5.776744 ACACGAAACGAGGTAGAAGTTAAT 58.223 37.500 0.00 0.00 0.00 1.40
2642 3417 5.186996 ACACGAAACGAGGTAGAAGTTAA 57.813 39.130 0.00 0.00 0.00 2.01
2643 3418 4.836125 ACACGAAACGAGGTAGAAGTTA 57.164 40.909 0.00 0.00 0.00 2.24
2644 3419 3.722728 ACACGAAACGAGGTAGAAGTT 57.277 42.857 0.00 0.00 0.00 2.66
2645 3420 3.722728 AACACGAAACGAGGTAGAAGT 57.277 42.857 0.00 0.00 0.00 3.01
2646 3421 4.296690 AGAAACACGAAACGAGGTAGAAG 58.703 43.478 0.00 0.00 0.00 2.85
2647 3422 4.311816 AGAAACACGAAACGAGGTAGAA 57.688 40.909 0.00 0.00 0.00 2.10
2648 3423 3.996150 AGAAACACGAAACGAGGTAGA 57.004 42.857 0.00 0.00 0.00 2.59
2649 3424 4.046462 TCAAGAAACACGAAACGAGGTAG 58.954 43.478 0.00 0.00 0.00 3.18
2650 3425 3.798337 GTCAAGAAACACGAAACGAGGTA 59.202 43.478 0.00 0.00 0.00 3.08
2651 3426 2.606272 GTCAAGAAACACGAAACGAGGT 59.394 45.455 0.00 0.00 0.00 3.85
2652 3427 2.605818 TGTCAAGAAACACGAAACGAGG 59.394 45.455 0.00 0.00 0.00 4.63
2653 3428 3.918258 TGTCAAGAAACACGAAACGAG 57.082 42.857 0.00 0.00 0.00 4.18
2654 3429 5.692654 TGATATGTCAAGAAACACGAAACGA 59.307 36.000 0.00 0.00 30.55 3.85
2655 3430 5.911421 TGATATGTCAAGAAACACGAAACG 58.089 37.500 0.00 0.00 30.55 3.60
2656 3431 6.577427 GGTTGATATGTCAAGAAACACGAAAC 59.423 38.462 4.98 0.00 44.58 2.78
2657 3432 6.261158 TGGTTGATATGTCAAGAAACACGAAA 59.739 34.615 4.98 0.00 44.58 3.46
2658 3433 5.760743 TGGTTGATATGTCAAGAAACACGAA 59.239 36.000 4.98 0.00 44.58 3.85
2659 3434 5.301555 TGGTTGATATGTCAAGAAACACGA 58.698 37.500 4.98 0.00 44.58 4.35
2660 3435 5.605564 TGGTTGATATGTCAAGAAACACG 57.394 39.130 4.98 0.00 44.58 4.49
2661 3436 9.559958 CTTATTGGTTGATATGTCAAGAAACAC 57.440 33.333 4.98 0.00 44.58 3.32
2662 3437 9.513906 TCTTATTGGTTGATATGTCAAGAAACA 57.486 29.630 4.98 0.63 44.58 2.83
2663 3438 9.994432 CTCTTATTGGTTGATATGTCAAGAAAC 57.006 33.333 4.98 0.00 44.58 2.78
2664 3439 9.958180 TCTCTTATTGGTTGATATGTCAAGAAA 57.042 29.630 4.98 3.84 44.58 2.52
2666 3441 9.551734 CATCTCTTATTGGTTGATATGTCAAGA 57.448 33.333 4.98 0.00 44.58 3.02
2667 3442 9.551734 TCATCTCTTATTGGTTGATATGTCAAG 57.448 33.333 4.98 0.00 44.58 3.02
2668 3443 9.551734 CTCATCTCTTATTGGTTGATATGTCAA 57.448 33.333 0.03 0.03 41.89 3.18
2669 3444 8.152898 CCTCATCTCTTATTGGTTGATATGTCA 58.847 37.037 0.00 0.00 0.00 3.58
2670 3445 7.605691 CCCTCATCTCTTATTGGTTGATATGTC 59.394 40.741 0.00 0.00 0.00 3.06
2671 3446 7.456725 CCCTCATCTCTTATTGGTTGATATGT 58.543 38.462 0.00 0.00 0.00 2.29
2672 3447 6.883217 CCCCTCATCTCTTATTGGTTGATATG 59.117 42.308 0.00 0.00 0.00 1.78
2673 3448 6.564152 ACCCCTCATCTCTTATTGGTTGATAT 59.436 38.462 0.00 0.00 0.00 1.63
2674 3449 5.911178 ACCCCTCATCTCTTATTGGTTGATA 59.089 40.000 0.00 0.00 0.00 2.15
2675 3450 4.728860 ACCCCTCATCTCTTATTGGTTGAT 59.271 41.667 0.00 0.00 0.00 2.57
2676 3451 4.080356 CACCCCTCATCTCTTATTGGTTGA 60.080 45.833 0.00 0.00 0.00 3.18
2677 3452 4.202441 CACCCCTCATCTCTTATTGGTTG 58.798 47.826 0.00 0.00 0.00 3.77
2678 3453 3.852578 ACACCCCTCATCTCTTATTGGTT 59.147 43.478 0.00 0.00 0.00 3.67
2679 3454 3.200825 CACACCCCTCATCTCTTATTGGT 59.799 47.826 0.00 0.00 0.00 3.67
2680 3455 3.813443 CACACCCCTCATCTCTTATTGG 58.187 50.000 0.00 0.00 0.00 3.16
2681 3456 3.209410 GCACACCCCTCATCTCTTATTG 58.791 50.000 0.00 0.00 0.00 1.90
2682 3457 2.846206 TGCACACCCCTCATCTCTTATT 59.154 45.455 0.00 0.00 0.00 1.40
2683 3458 2.481441 TGCACACCCCTCATCTCTTAT 58.519 47.619 0.00 0.00 0.00 1.73
2684 3459 1.951209 TGCACACCCCTCATCTCTTA 58.049 50.000 0.00 0.00 0.00 2.10
2685 3460 1.064906 CATGCACACCCCTCATCTCTT 60.065 52.381 0.00 0.00 0.00 2.85
2686 3461 0.545171 CATGCACACCCCTCATCTCT 59.455 55.000 0.00 0.00 0.00 3.10
2687 3462 1.099879 GCATGCACACCCCTCATCTC 61.100 60.000 14.21 0.00 0.00 2.75
2688 3463 1.077212 GCATGCACACCCCTCATCT 60.077 57.895 14.21 0.00 0.00 2.90
2689 3464 0.682209 AAGCATGCACACCCCTCATC 60.682 55.000 21.98 0.00 0.00 2.92
2690 3465 0.251922 AAAGCATGCACACCCCTCAT 60.252 50.000 21.98 0.00 0.00 2.90
2691 3466 0.469705 AAAAGCATGCACACCCCTCA 60.470 50.000 21.98 0.00 0.00 3.86
2692 3467 1.544724 TAAAAGCATGCACACCCCTC 58.455 50.000 21.98 0.00 0.00 4.30
2693 3468 2.008242 TTAAAAGCATGCACACCCCT 57.992 45.000 21.98 0.00 0.00 4.79
2694 3469 4.081697 AGTTATTAAAAGCATGCACACCCC 60.082 41.667 21.98 0.00 0.00 4.95
2695 3470 5.072040 AGTTATTAAAAGCATGCACACCC 57.928 39.130 21.98 0.00 0.00 4.61
2696 3471 6.155827 TCAAGTTATTAAAAGCATGCACACC 58.844 36.000 21.98 0.00 0.00 4.16
2697 3472 7.061094 GTCTCAAGTTATTAAAAGCATGCACAC 59.939 37.037 21.98 4.15 0.00 3.82
2698 3473 7.040478 AGTCTCAAGTTATTAAAAGCATGCACA 60.040 33.333 21.98 0.00 0.00 4.57
2699 3474 7.308435 AGTCTCAAGTTATTAAAAGCATGCAC 58.692 34.615 21.98 6.43 0.00 4.57
2700 3475 7.452880 AGTCTCAAGTTATTAAAAGCATGCA 57.547 32.000 21.98 0.00 0.00 3.96
2701 3476 7.910683 GGTAGTCTCAAGTTATTAAAAGCATGC 59.089 37.037 10.51 10.51 0.00 4.06
2702 3477 8.946085 TGGTAGTCTCAAGTTATTAAAAGCATG 58.054 33.333 0.00 0.00 0.00 4.06
2703 3478 9.515226 TTGGTAGTCTCAAGTTATTAAAAGCAT 57.485 29.630 0.00 0.00 0.00 3.79
2704 3479 8.911918 TTGGTAGTCTCAAGTTATTAAAAGCA 57.088 30.769 0.00 0.00 0.00 3.91
2705 3480 9.608617 GTTTGGTAGTCTCAAGTTATTAAAAGC 57.391 33.333 0.00 0.00 0.00 3.51
2706 3481 9.807386 CGTTTGGTAGTCTCAAGTTATTAAAAG 57.193 33.333 0.00 0.00 0.00 2.27
2707 3482 8.284693 GCGTTTGGTAGTCTCAAGTTATTAAAA 58.715 33.333 0.00 0.00 0.00 1.52
2708 3483 7.441760 TGCGTTTGGTAGTCTCAAGTTATTAAA 59.558 33.333 0.00 0.00 0.00 1.52
2709 3484 6.930164 TGCGTTTGGTAGTCTCAAGTTATTAA 59.070 34.615 0.00 0.00 0.00 1.40
2710 3485 6.457355 TGCGTTTGGTAGTCTCAAGTTATTA 58.543 36.000 0.00 0.00 0.00 0.98
2711 3486 5.302360 TGCGTTTGGTAGTCTCAAGTTATT 58.698 37.500 0.00 0.00 0.00 1.40
2712 3487 4.890088 TGCGTTTGGTAGTCTCAAGTTAT 58.110 39.130 0.00 0.00 0.00 1.89
2713 3488 4.325028 TGCGTTTGGTAGTCTCAAGTTA 57.675 40.909 0.00 0.00 0.00 2.24
2714 3489 3.188159 TGCGTTTGGTAGTCTCAAGTT 57.812 42.857 0.00 0.00 0.00 2.66
2715 3490 2.870411 GTTGCGTTTGGTAGTCTCAAGT 59.130 45.455 0.00 0.00 0.00 3.16
2716 3491 2.869801 TGTTGCGTTTGGTAGTCTCAAG 59.130 45.455 0.00 0.00 0.00 3.02
2717 3492 2.907634 TGTTGCGTTTGGTAGTCTCAA 58.092 42.857 0.00 0.00 0.00 3.02
2718 3493 2.605837 TGTTGCGTTTGGTAGTCTCA 57.394 45.000 0.00 0.00 0.00 3.27
2719 3494 2.412847 GCATGTTGCGTTTGGTAGTCTC 60.413 50.000 0.00 0.00 31.71 3.36
2720 3495 1.535462 GCATGTTGCGTTTGGTAGTCT 59.465 47.619 0.00 0.00 31.71 3.24
2721 3496 1.963747 GCATGTTGCGTTTGGTAGTC 58.036 50.000 0.00 0.00 31.71 2.59
2732 3507 2.293122 TGAACTAACCACTGCATGTTGC 59.707 45.455 6.65 0.00 45.29 4.17
2733 3508 4.771590 ATGAACTAACCACTGCATGTTG 57.228 40.909 6.65 0.00 0.00 3.33
2734 3509 4.559300 GCAATGAACTAACCACTGCATGTT 60.559 41.667 0.00 0.00 0.00 2.71
2735 3510 3.057315 GCAATGAACTAACCACTGCATGT 60.057 43.478 0.00 0.00 0.00 3.21
2736 3511 3.057386 TGCAATGAACTAACCACTGCATG 60.057 43.478 0.00 0.00 33.65 4.06
2737 3512 3.156293 TGCAATGAACTAACCACTGCAT 58.844 40.909 0.00 0.00 33.65 3.96
2738 3513 2.580962 TGCAATGAACTAACCACTGCA 58.419 42.857 0.00 0.00 36.06 4.41
2739 3514 3.855689 ATGCAATGAACTAACCACTGC 57.144 42.857 0.00 0.00 0.00 4.40
2779 3554 9.063615 GGAGAAAACAAGAGACCTTAATGTTTA 57.936 33.333 2.99 0.00 30.60 2.01
2780 3555 7.780271 AGGAGAAAACAAGAGACCTTAATGTTT 59.220 33.333 0.00 0.00 31.46 2.83
2781 3556 7.290813 AGGAGAAAACAAGAGACCTTAATGTT 58.709 34.615 0.00 0.00 0.00 2.71
2782 3557 6.842676 AGGAGAAAACAAGAGACCTTAATGT 58.157 36.000 0.00 0.00 0.00 2.71
2783 3558 6.372937 GGAGGAGAAAACAAGAGACCTTAATG 59.627 42.308 0.00 0.00 0.00 1.90
2784 3559 6.273495 AGGAGGAGAAAACAAGAGACCTTAAT 59.727 38.462 0.00 0.00 0.00 1.40
2785 3560 5.607171 AGGAGGAGAAAACAAGAGACCTTAA 59.393 40.000 0.00 0.00 0.00 1.85
2786 3561 5.155905 AGGAGGAGAAAACAAGAGACCTTA 58.844 41.667 0.00 0.00 0.00 2.69
2787 3562 3.977326 AGGAGGAGAAAACAAGAGACCTT 59.023 43.478 0.00 0.00 0.00 3.50
2788 3563 3.580895 GAGGAGGAGAAAACAAGAGACCT 59.419 47.826 0.00 0.00 0.00 3.85
2789 3564 3.307129 GGAGGAGGAGAAAACAAGAGACC 60.307 52.174 0.00 0.00 0.00 3.85
2790 3565 3.580895 AGGAGGAGGAGAAAACAAGAGAC 59.419 47.826 0.00 0.00 0.00 3.36
2791 3566 3.863086 AGGAGGAGGAGAAAACAAGAGA 58.137 45.455 0.00 0.00 0.00 3.10
2792 3567 4.322567 CAAGGAGGAGGAGAAAACAAGAG 58.677 47.826 0.00 0.00 0.00 2.85
2793 3568 3.073062 CCAAGGAGGAGGAGAAAACAAGA 59.927 47.826 0.00 0.00 41.22 3.02
2794 3569 3.181439 ACCAAGGAGGAGGAGAAAACAAG 60.181 47.826 0.00 0.00 41.22 3.16
2795 3570 2.783510 ACCAAGGAGGAGGAGAAAACAA 59.216 45.455 0.00 0.00 41.22 2.83
2796 3571 2.372172 GACCAAGGAGGAGGAGAAAACA 59.628 50.000 0.00 0.00 41.22 2.83
2797 3572 2.372172 TGACCAAGGAGGAGGAGAAAAC 59.628 50.000 0.00 0.00 41.22 2.43
2798 3573 2.372172 GTGACCAAGGAGGAGGAGAAAA 59.628 50.000 0.00 0.00 41.22 2.29
2799 3574 1.978580 GTGACCAAGGAGGAGGAGAAA 59.021 52.381 0.00 0.00 41.22 2.52
2800 3575 1.645710 GTGACCAAGGAGGAGGAGAA 58.354 55.000 0.00 0.00 41.22 2.87
2801 3576 0.612174 CGTGACCAAGGAGGAGGAGA 60.612 60.000 0.00 0.00 41.22 3.71
2802 3577 1.608717 CCGTGACCAAGGAGGAGGAG 61.609 65.000 0.00 0.00 41.22 3.69
2803 3578 1.609501 CCGTGACCAAGGAGGAGGA 60.610 63.158 0.00 0.00 41.22 3.71
2804 3579 1.913762 ACCGTGACCAAGGAGGAGG 60.914 63.158 8.91 0.00 41.22 4.30
2805 3580 1.293498 CACCGTGACCAAGGAGGAG 59.707 63.158 8.91 0.00 41.22 3.69
2806 3581 2.879233 GCACCGTGACCAAGGAGGA 61.879 63.158 8.91 0.00 41.22 3.71
2807 3582 2.358737 GCACCGTGACCAAGGAGG 60.359 66.667 8.91 2.33 45.67 4.30
2808 3583 1.961277 GTGCACCGTGACCAAGGAG 60.961 63.158 5.22 2.30 33.97 3.69
2809 3584 2.110213 GTGCACCGTGACCAAGGA 59.890 61.111 5.22 0.00 33.97 3.36
2810 3585 1.821759 TTGTGCACCGTGACCAAGG 60.822 57.895 15.69 0.44 35.99 3.61
2811 3586 1.355210 GTTGTGCACCGTGACCAAG 59.645 57.895 15.69 0.00 0.00 3.61
2812 3587 2.115911 GGTTGTGCACCGTGACCAA 61.116 57.895 15.69 1.00 35.12 3.67
2813 3588 2.515057 GGTTGTGCACCGTGACCA 60.515 61.111 15.69 0.00 35.12 4.02
2818 3593 7.249927 TAAGTCATCTTAGGTTGTGCACCGT 62.250 44.000 15.69 3.89 41.54 4.83
2819 3594 4.858007 TAAGTCATCTTAGGTTGTGCACCG 60.858 45.833 15.69 0.00 41.54 4.94
2820 3595 4.392138 GTAAGTCATCTTAGGTTGTGCACC 59.608 45.833 15.69 0.00 39.22 5.01
2821 3596 5.238583 AGTAAGTCATCTTAGGTTGTGCAC 58.761 41.667 10.75 10.75 36.90 4.57
2822 3597 5.011635 TGAGTAAGTCATCTTAGGTTGTGCA 59.988 40.000 0.00 0.00 36.90 4.57
2823 3598 5.348997 GTGAGTAAGTCATCTTAGGTTGTGC 59.651 44.000 0.00 0.00 37.56 4.57
2824 3599 5.869888 GGTGAGTAAGTCATCTTAGGTTGTG 59.130 44.000 0.00 0.00 37.56 3.33
2825 3600 5.780793 AGGTGAGTAAGTCATCTTAGGTTGT 59.219 40.000 0.00 0.00 45.09 3.32
2826 3601 6.287589 AGGTGAGTAAGTCATCTTAGGTTG 57.712 41.667 0.00 0.00 45.09 3.77
2827 3602 7.339976 GTCTAGGTGAGTAAGTCATCTTAGGTT 59.660 40.741 0.00 0.00 45.09 3.50
2828 3603 6.829811 GTCTAGGTGAGTAAGTCATCTTAGGT 59.170 42.308 0.00 0.00 45.09 3.08
2829 3604 6.829298 TGTCTAGGTGAGTAAGTCATCTTAGG 59.171 42.308 0.00 0.00 45.09 2.69
2830 3605 7.771361 TCTGTCTAGGTGAGTAAGTCATCTTAG 59.229 40.741 0.00 0.00 45.09 2.18
2831 3606 7.631007 TCTGTCTAGGTGAGTAAGTCATCTTA 58.369 38.462 0.00 0.00 45.09 2.10
2832 3607 6.486056 TCTGTCTAGGTGAGTAAGTCATCTT 58.514 40.000 0.00 0.00 45.09 2.40
2834 3609 6.037830 GTCTCTGTCTAGGTGAGTAAGTCATC 59.962 46.154 0.00 0.00 37.56 2.92
2835 3610 5.883673 GTCTCTGTCTAGGTGAGTAAGTCAT 59.116 44.000 0.00 0.00 37.56 3.06
2836 3611 5.221864 TGTCTCTGTCTAGGTGAGTAAGTCA 60.222 44.000 0.00 0.00 0.00 3.41
2837 3612 5.247084 TGTCTCTGTCTAGGTGAGTAAGTC 58.753 45.833 0.00 0.00 0.00 3.01
2838 3613 5.221966 ACTGTCTCTGTCTAGGTGAGTAAGT 60.222 44.000 0.00 2.16 0.00 2.24
2839 3614 5.250200 ACTGTCTCTGTCTAGGTGAGTAAG 58.750 45.833 0.00 1.63 0.00 2.34
2840 3615 5.244189 ACTGTCTCTGTCTAGGTGAGTAA 57.756 43.478 0.00 0.00 0.00 2.24
2841 3616 4.912317 ACTGTCTCTGTCTAGGTGAGTA 57.088 45.455 0.00 0.00 0.00 2.59
2842 3617 3.799432 ACTGTCTCTGTCTAGGTGAGT 57.201 47.619 0.00 0.00 0.00 3.41
2843 3618 5.250200 ACTTACTGTCTCTGTCTAGGTGAG 58.750 45.833 0.00 0.00 0.00 3.51
2844 3619 5.244189 ACTTACTGTCTCTGTCTAGGTGA 57.756 43.478 0.00 0.00 0.00 4.02
2845 3620 5.554822 GACTTACTGTCTCTGTCTAGGTG 57.445 47.826 0.00 0.00 42.21 4.00
2857 3632 5.608449 ACACACCCTTAAAGACTTACTGTC 58.392 41.667 0.00 0.00 45.67 3.51
2858 3633 5.625568 ACACACCCTTAAAGACTTACTGT 57.374 39.130 0.00 0.00 0.00 3.55
2859 3634 6.238648 CCAAACACACCCTTAAAGACTTACTG 60.239 42.308 0.00 0.00 0.00 2.74
2860 3635 5.826208 CCAAACACACCCTTAAAGACTTACT 59.174 40.000 0.00 0.00 0.00 2.24
2861 3636 5.591472 ACCAAACACACCCTTAAAGACTTAC 59.409 40.000 0.00 0.00 0.00 2.34
2862 3637 5.757988 ACCAAACACACCCTTAAAGACTTA 58.242 37.500 0.00 0.00 0.00 2.24
2901 3676 3.401182 GTCATGCCAAAATTTTGCCTGA 58.599 40.909 22.90 20.64 36.86 3.86
2903 3678 2.106166 TGGTCATGCCAAAATTTTGCCT 59.894 40.909 22.90 10.32 45.94 4.75
2904 3679 2.502295 TGGTCATGCCAAAATTTTGCC 58.498 42.857 22.90 17.50 45.94 4.52
2946 3722 5.798125 TCCAAACATTATGTCTTGCCAAA 57.202 34.783 0.00 0.00 0.00 3.28
2958 3734 3.900601 ACTGGGTTGCAATCCAAACATTA 59.099 39.130 30.58 7.68 43.10 1.90
2972 3749 6.399639 AATTTTGGTAAGTACACTGGGTTG 57.600 37.500 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.