Multiple sequence alignment - TraesCS2B01G607200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G607200 chr2B 100.000 6344 0 0 1 6344 787969004 787962661 0.000000e+00 11716.0
1 TraesCS2B01G607200 chr2B 89.562 958 72 19 3646 4595 609288664 609287727 0.000000e+00 1190.0
2 TraesCS2B01G607200 chr2A 90.064 3593 222 68 2334 5874 779968260 779971769 0.000000e+00 4532.0
3 TraesCS2B01G607200 chr2A 83.265 3412 287 125 149 3393 772385819 772382525 0.000000e+00 2876.0
4 TraesCS2B01G607200 chr2A 92.806 1974 96 15 3458 5408 772382528 772380578 0.000000e+00 2817.0
5 TraesCS2B01G607200 chr2A 87.500 392 33 11 1952 2338 779948649 779949029 7.550000e-119 438.0
6 TraesCS2B01G607200 chr2A 81.980 505 36 32 5875 6344 772378415 772377931 1.670000e-100 377.0
7 TraesCS2B01G607200 chr2A 87.500 304 19 8 6055 6344 779972506 779972804 3.670000e-87 333.0
8 TraesCS2B01G607200 chr2A 83.889 180 22 4 5459 5637 772380393 772380220 1.410000e-36 165.0
9 TraesCS2B01G607200 chr2A 96.154 52 1 1 6011 6061 779972443 779972494 4.080000e-12 84.2
10 TraesCS2B01G607200 chr2D 94.710 1985 80 12 3476 5445 650754605 650752631 0.000000e+00 3061.0
11 TraesCS2B01G607200 chr2D 87.875 2499 168 70 149 2592 650758159 650755741 0.000000e+00 2811.0
12 TraesCS2B01G607200 chr2D 90.057 523 35 7 2766 3273 650755602 650755082 0.000000e+00 662.0
13 TraesCS2B01G607200 chr2D 90.654 107 4 4 5768 5874 650775498 650775598 3.080000e-28 137.0
14 TraesCS2B01G607200 chr2D 88.571 70 5 3 3411 3479 650754950 650754883 1.470000e-11 82.4
15 TraesCS2B01G607200 chr1A 91.368 950 71 6 3646 4595 520853469 520854407 0.000000e+00 1290.0
16 TraesCS2B01G607200 chr3A 90.985 954 71 7 3646 4595 703931197 703930255 0.000000e+00 1271.0
17 TraesCS2B01G607200 chr6A 90.241 953 79 8 3646 4595 425738219 425739160 0.000000e+00 1232.0
18 TraesCS2B01G607200 chr7A 89.512 963 83 11 3646 4608 299380719 299379775 0.000000e+00 1203.0
19 TraesCS2B01G607200 chr3B 92.267 750 43 11 3866 4613 795066638 795067374 0.000000e+00 1050.0
20 TraesCS2B01G607200 chr3B 86.901 313 35 3 3646 3957 145896809 145896502 4.710000e-91 346.0
21 TraesCS2B01G607200 chrUn 90.500 200 16 1 6144 6343 36877777 36877581 1.750000e-65 261.0
22 TraesCS2B01G607200 chrUn 90.500 200 16 1 6144 6343 280728334 280728138 1.750000e-65 261.0
23 TraesCS2B01G607200 chrUn 90.500 200 16 1 6144 6343 328198802 328198606 1.750000e-65 261.0
24 TraesCS2B01G607200 chr5A 91.099 191 14 2 3541 3730 621681208 621681396 8.160000e-64 255.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G607200 chr2B 787962661 787969004 6343 True 11716.000000 11716 100.000000 1 6344 1 chr2B.!!$R2 6343
1 TraesCS2B01G607200 chr2B 609287727 609288664 937 True 1190.000000 1190 89.562000 3646 4595 1 chr2B.!!$R1 949
2 TraesCS2B01G607200 chr2A 779968260 779972804 4544 False 1649.733333 4532 91.239333 2334 6344 3 chr2A.!!$F2 4010
3 TraesCS2B01G607200 chr2A 772377931 772385819 7888 True 1558.750000 2876 85.485000 149 6344 4 chr2A.!!$R1 6195
4 TraesCS2B01G607200 chr2D 650752631 650758159 5528 True 1654.100000 3061 90.303250 149 5445 4 chr2D.!!$R1 5296
5 TraesCS2B01G607200 chr1A 520853469 520854407 938 False 1290.000000 1290 91.368000 3646 4595 1 chr1A.!!$F1 949
6 TraesCS2B01G607200 chr3A 703930255 703931197 942 True 1271.000000 1271 90.985000 3646 4595 1 chr3A.!!$R1 949
7 TraesCS2B01G607200 chr6A 425738219 425739160 941 False 1232.000000 1232 90.241000 3646 4595 1 chr6A.!!$F1 949
8 TraesCS2B01G607200 chr7A 299379775 299380719 944 True 1203.000000 1203 89.512000 3646 4608 1 chr7A.!!$R1 962
9 TraesCS2B01G607200 chr3B 795066638 795067374 736 False 1050.000000 1050 92.267000 3866 4613 1 chr3B.!!$F1 747

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
126 127 0.032952 GATAAGGCGTACATGGCGGA 59.967 55.0 12.59 0.00 39.82 5.54 F
127 128 0.033504 ATAAGGCGTACATGGCGGAG 59.966 55.0 12.59 0.00 39.82 4.63 F
552 582 0.037232 AACTACTCCGCAAGACCAGC 60.037 55.0 0.00 0.00 43.02 4.85 F
1955 2130 0.039617 CCGAGATGAGACCGCTGATC 60.040 60.0 0.00 0.00 35.30 2.92 F
2493 2668 0.397941 TTGGACAGGAACAGGCTGAG 59.602 55.0 23.66 7.73 0.00 3.35 F
3395 3722 0.397564 TCACTGCTCATGAGGCAACA 59.602 50.0 23.89 12.06 39.30 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1178 1281 0.110644 GGCGCGAGTTTGTCAGAAAG 60.111 55.000 12.10 0.00 0.00 2.62 R
1235 1338 0.681243 AGGAAATGGAAAGGAGCGGC 60.681 55.000 0.00 0.00 0.00 6.53 R
2506 2681 0.405585 AACCAGTAGCATTGCCACCT 59.594 50.000 4.70 0.00 0.00 4.00 R
2948 3169 0.462759 GGCATAGTCCACTGTGAGCC 60.463 60.000 9.86 8.65 37.28 4.70 R
4091 4725 1.134007 TCATGCTGGCTAGTCCAATGG 60.134 52.381 13.41 0.00 46.01 3.16 R
5357 6024 0.402887 TCTACAGTGGGACGAGGTGA 59.597 55.000 0.00 0.00 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.668386 GCCGGAACTTTGAGTGGG 58.332 61.111 5.05 0.00 0.00 4.61
18 19 1.971695 GCCGGAACTTTGAGTGGGG 60.972 63.158 5.05 0.00 0.00 4.96
19 20 1.454539 CCGGAACTTTGAGTGGGGT 59.545 57.895 0.00 0.00 0.00 4.95
20 21 0.889186 CCGGAACTTTGAGTGGGGTG 60.889 60.000 0.00 0.00 0.00 4.61
21 22 0.107831 CGGAACTTTGAGTGGGGTGA 59.892 55.000 0.00 0.00 0.00 4.02
22 23 1.878102 CGGAACTTTGAGTGGGGTGAG 60.878 57.143 0.00 0.00 0.00 3.51
23 24 1.420138 GGAACTTTGAGTGGGGTGAGA 59.580 52.381 0.00 0.00 0.00 3.27
24 25 2.040412 GGAACTTTGAGTGGGGTGAGAT 59.960 50.000 0.00 0.00 0.00 2.75
25 26 2.867109 ACTTTGAGTGGGGTGAGATG 57.133 50.000 0.00 0.00 0.00 2.90
26 27 1.271597 ACTTTGAGTGGGGTGAGATGC 60.272 52.381 0.00 0.00 0.00 3.91
27 28 0.321564 TTTGAGTGGGGTGAGATGCG 60.322 55.000 0.00 0.00 0.00 4.73
28 29 2.512515 GAGTGGGGTGAGATGCGC 60.513 66.667 0.00 0.00 0.00 6.09
29 30 4.457496 AGTGGGGTGAGATGCGCG 62.457 66.667 0.00 0.00 0.00 6.86
32 33 4.778143 GGGGTGAGATGCGCGGTT 62.778 66.667 8.83 0.00 0.00 4.44
33 34 3.499737 GGGTGAGATGCGCGGTTG 61.500 66.667 8.83 0.00 0.00 3.77
34 35 3.499737 GGTGAGATGCGCGGTTGG 61.500 66.667 8.83 0.00 0.00 3.77
35 36 2.434185 GTGAGATGCGCGGTTGGA 60.434 61.111 8.83 0.00 0.00 3.53
36 37 1.815421 GTGAGATGCGCGGTTGGAT 60.815 57.895 8.83 0.00 0.00 3.41
37 38 1.521457 TGAGATGCGCGGTTGGATC 60.521 57.895 8.83 0.00 37.00 3.36
38 39 2.203070 AGATGCGCGGTTGGATCC 60.203 61.111 8.83 4.20 37.41 3.36
39 40 2.513666 GATGCGCGGTTGGATCCA 60.514 61.111 11.44 11.44 31.19 3.41
40 41 2.514592 ATGCGCGGTTGGATCCAG 60.515 61.111 15.53 4.71 0.00 3.86
41 42 3.329542 ATGCGCGGTTGGATCCAGT 62.330 57.895 15.53 0.00 0.00 4.00
42 43 2.746277 GCGCGGTTGGATCCAGTT 60.746 61.111 15.53 0.00 0.00 3.16
43 44 3.039202 GCGCGGTTGGATCCAGTTG 62.039 63.158 15.53 9.51 0.00 3.16
44 45 1.375396 CGCGGTTGGATCCAGTTGA 60.375 57.895 15.53 0.00 0.00 3.18
45 46 1.361668 CGCGGTTGGATCCAGTTGAG 61.362 60.000 15.53 6.54 0.00 3.02
46 47 1.648467 GCGGTTGGATCCAGTTGAGC 61.648 60.000 15.53 13.30 0.00 4.26
47 48 0.036010 CGGTTGGATCCAGTTGAGCT 60.036 55.000 15.53 0.00 0.00 4.09
48 49 1.457346 GGTTGGATCCAGTTGAGCTG 58.543 55.000 15.53 0.00 44.63 4.24
55 56 2.839098 CAGTTGAGCTGGGGTGGT 59.161 61.111 0.00 0.00 41.42 4.16
56 57 1.302832 CAGTTGAGCTGGGGTGGTC 60.303 63.158 0.00 0.00 41.42 4.02
57 58 1.462238 AGTTGAGCTGGGGTGGTCT 60.462 57.895 0.00 0.00 35.68 3.85
58 59 1.003233 GTTGAGCTGGGGTGGTCTC 60.003 63.158 0.00 0.00 35.68 3.36
59 60 2.224159 TTGAGCTGGGGTGGTCTCC 61.224 63.158 0.00 0.00 35.68 3.71
60 61 3.775654 GAGCTGGGGTGGTCTCCG 61.776 72.222 0.00 0.00 0.00 4.63
80 81 3.787001 CGGGAGGCAAGGGAGGAC 61.787 72.222 0.00 0.00 0.00 3.85
81 82 2.285743 GGGAGGCAAGGGAGGACT 60.286 66.667 0.00 0.00 0.00 3.85
82 83 2.674220 GGGAGGCAAGGGAGGACTG 61.674 68.421 0.00 0.00 0.00 3.51
83 84 2.674220 GGAGGCAAGGGAGGACTGG 61.674 68.421 0.00 0.00 0.00 4.00
84 85 2.612115 AGGCAAGGGAGGACTGGG 60.612 66.667 0.00 0.00 0.00 4.45
85 86 2.610859 GGCAAGGGAGGACTGGGA 60.611 66.667 0.00 0.00 0.00 4.37
86 87 2.674220 GGCAAGGGAGGACTGGGAG 61.674 68.421 0.00 0.00 0.00 4.30
87 88 2.674220 GCAAGGGAGGACTGGGAGG 61.674 68.421 0.00 0.00 0.00 4.30
88 89 2.285743 AAGGGAGGACTGGGAGGC 60.286 66.667 0.00 0.00 0.00 4.70
89 90 3.194025 AAGGGAGGACTGGGAGGCA 62.194 63.158 0.00 0.00 0.00 4.75
90 91 2.610859 GGGAGGACTGGGAGGCAA 60.611 66.667 0.00 0.00 0.00 4.52
91 92 2.674220 GGGAGGACTGGGAGGCAAG 61.674 68.421 0.00 0.00 0.00 4.01
92 93 2.674220 GGAGGACTGGGAGGCAAGG 61.674 68.421 0.00 0.00 0.00 3.61
93 94 2.612115 AGGACTGGGAGGCAAGGG 60.612 66.667 0.00 0.00 0.00 3.95
94 95 2.610859 GGACTGGGAGGCAAGGGA 60.611 66.667 0.00 0.00 0.00 4.20
95 96 2.231380 GGACTGGGAGGCAAGGGAA 61.231 63.158 0.00 0.00 0.00 3.97
96 97 1.767692 GACTGGGAGGCAAGGGAAA 59.232 57.895 0.00 0.00 0.00 3.13
97 98 0.322906 GACTGGGAGGCAAGGGAAAG 60.323 60.000 0.00 0.00 0.00 2.62
98 99 1.000396 CTGGGAGGCAAGGGAAAGG 60.000 63.158 0.00 0.00 0.00 3.11
99 100 1.778383 TGGGAGGCAAGGGAAAGGT 60.778 57.895 0.00 0.00 0.00 3.50
100 101 1.368268 TGGGAGGCAAGGGAAAGGTT 61.368 55.000 0.00 0.00 0.00 3.50
101 102 0.612174 GGGAGGCAAGGGAAAGGTTC 60.612 60.000 0.00 0.00 0.00 3.62
122 123 2.404215 CCTTCGATAAGGCGTACATGG 58.596 52.381 0.00 0.00 45.78 3.66
123 124 1.792949 CTTCGATAAGGCGTACATGGC 59.207 52.381 0.00 0.00 0.00 4.40
124 125 0.318360 TCGATAAGGCGTACATGGCG 60.318 55.000 0.00 2.31 39.82 5.69
125 126 1.282248 CGATAAGGCGTACATGGCGG 61.282 60.000 12.59 0.00 39.82 6.13
126 127 0.032952 GATAAGGCGTACATGGCGGA 59.967 55.000 12.59 0.00 39.82 5.54
127 128 0.033504 ATAAGGCGTACATGGCGGAG 59.966 55.000 12.59 0.00 39.82 4.63
141 142 2.442272 GGAGCTCCACCGCCTCTA 60.442 66.667 28.43 0.00 35.64 2.43
142 143 2.494530 GGAGCTCCACCGCCTCTAG 61.495 68.421 28.43 0.00 35.64 2.43
143 144 2.443016 AGCTCCACCGCCTCTAGG 60.443 66.667 0.00 0.00 38.53 3.02
177 178 7.817418 AAAATAGTGGAGTAAAAGCAGTCAA 57.183 32.000 0.00 0.00 0.00 3.18
179 180 3.131396 AGTGGAGTAAAAGCAGTCAACG 58.869 45.455 0.00 0.00 28.57 4.10
191 192 2.159960 GCAGTCAACGAAGCTTTACTCG 60.160 50.000 0.00 1.43 0.00 4.18
192 193 3.305964 CAGTCAACGAAGCTTTACTCGA 58.694 45.455 12.25 0.00 0.00 4.04
200 201 3.964970 CGAAGCTTTACTCGACGGTATAC 59.035 47.826 0.00 0.00 0.00 1.47
204 205 3.304324 GCTTTACTCGACGGTATACTCCC 60.304 52.174 2.25 0.00 0.00 4.30
212 213 4.520492 TCGACGGTATACTCCCCTATTTTC 59.480 45.833 2.25 0.00 0.00 2.29
228 229 2.103153 TTTCAGGGGATCGGCTAGAT 57.897 50.000 0.00 0.00 43.51 1.98
232 233 2.043115 TCAGGGGATCGGCTAGATATGT 59.957 50.000 0.00 0.00 40.26 2.29
234 235 2.834549 AGGGGATCGGCTAGATATGTTG 59.165 50.000 0.00 0.00 40.26 3.33
240 246 6.398918 GGATCGGCTAGATATGTTGTTACAT 58.601 40.000 0.00 0.00 46.49 2.29
241 247 6.531948 GGATCGGCTAGATATGTTGTTACATC 59.468 42.308 0.00 0.00 43.81 3.06
242 248 6.650427 TCGGCTAGATATGTTGTTACATCT 57.350 37.500 0.00 0.00 43.81 2.90
243 249 6.678878 TCGGCTAGATATGTTGTTACATCTC 58.321 40.000 0.00 0.00 43.81 2.75
244 250 6.264518 TCGGCTAGATATGTTGTTACATCTCA 59.735 38.462 0.00 0.00 43.81 3.27
245 251 6.363626 CGGCTAGATATGTTGTTACATCTCAC 59.636 42.308 0.00 0.00 43.81 3.51
246 252 6.363626 GGCTAGATATGTTGTTACATCTCACG 59.636 42.308 0.00 0.00 43.81 4.35
255 261 4.017126 TGTTACATCTCACGTCTCATCCT 58.983 43.478 0.00 0.00 0.00 3.24
262 268 7.203910 ACATCTCACGTCTCATCCTTATAAAC 58.796 38.462 0.00 0.00 0.00 2.01
319 325 4.766891 TCAAAAGACTGACCCATTTGATCC 59.233 41.667 0.00 0.00 35.67 3.36
320 326 4.387026 AAAGACTGACCCATTTGATCCA 57.613 40.909 0.00 0.00 0.00 3.41
321 327 4.387026 AAGACTGACCCATTTGATCCAA 57.613 40.909 0.00 0.00 0.00 3.53
324 330 4.082125 GACTGACCCATTTGATCCAAAGT 58.918 43.478 0.00 0.00 36.76 2.66
325 331 4.082125 ACTGACCCATTTGATCCAAAGTC 58.918 43.478 0.00 0.00 36.76 3.01
333 356 5.358160 CCATTTGATCCAAAGTCTTCCCTAC 59.642 44.000 0.00 0.00 36.76 3.18
334 357 4.569719 TTGATCCAAAGTCTTCCCTACC 57.430 45.455 0.00 0.00 0.00 3.18
351 374 4.440802 CCCTACCGTTTGATCTCTCTCAAG 60.441 50.000 0.00 0.00 36.55 3.02
408 431 2.990967 CCACACCACATGGGCCAC 60.991 66.667 9.28 0.00 42.05 5.01
428 451 3.023119 ACAAGGCACAGTCAAATCACAA 58.977 40.909 0.00 0.00 0.00 3.33
445 468 0.037734 CAACCACACCTTACCCCCTC 59.962 60.000 0.00 0.00 0.00 4.30
448 471 1.229853 CACACCTTACCCCCTCCCT 60.230 63.158 0.00 0.00 0.00 4.20
453 476 1.710341 CTTACCCCCTCCCTCTCCA 59.290 63.158 0.00 0.00 0.00 3.86
454 477 0.044244 CTTACCCCCTCCCTCTCCAA 59.956 60.000 0.00 0.00 0.00 3.53
455 478 0.044244 TTACCCCCTCCCTCTCCAAG 59.956 60.000 0.00 0.00 0.00 3.61
456 479 0.858598 TACCCCCTCCCTCTCCAAGA 60.859 60.000 0.00 0.00 0.00 3.02
457 480 1.082954 CCCCCTCCCTCTCCAAGAA 59.917 63.158 0.00 0.00 0.00 2.52
458 481 0.985490 CCCCCTCCCTCTCCAAGAAG 60.985 65.000 0.00 0.00 0.00 2.85
459 482 0.043334 CCCCTCCCTCTCCAAGAAGA 59.957 60.000 0.00 0.00 0.00 2.87
460 483 1.555765 CCCCTCCCTCTCCAAGAAGAA 60.556 57.143 0.00 0.00 0.00 2.52
461 484 1.836802 CCCTCCCTCTCCAAGAAGAAG 59.163 57.143 0.00 0.00 0.00 2.85
462 485 2.560841 CCCTCCCTCTCCAAGAAGAAGA 60.561 54.545 0.00 0.00 0.00 2.87
463 486 3.177228 CCTCCCTCTCCAAGAAGAAGAA 58.823 50.000 0.00 0.00 0.00 2.52
487 510 9.487790 GAAGAAGAAGAAGAAGAAGATTCAAGA 57.512 33.333 0.00 0.00 0.00 3.02
542 570 7.636326 AGTGTCAACAAATTTAAACTACTCCG 58.364 34.615 0.00 0.00 0.00 4.63
552 582 0.037232 AACTACTCCGCAAGACCAGC 60.037 55.000 0.00 0.00 43.02 4.85
589 619 3.058224 ACGGCAAGCAGTCTTAACAAATC 60.058 43.478 0.00 0.00 0.00 2.17
593 623 5.181245 GGCAAGCAGTCTTAACAAATCACTA 59.819 40.000 0.00 0.00 0.00 2.74
594 624 6.293955 GGCAAGCAGTCTTAACAAATCACTAA 60.294 38.462 0.00 0.00 0.00 2.24
595 625 6.798959 GCAAGCAGTCTTAACAAATCACTAAG 59.201 38.462 0.00 0.00 0.00 2.18
596 626 7.307989 GCAAGCAGTCTTAACAAATCACTAAGA 60.308 37.037 0.00 0.00 30.95 2.10
597 627 8.725148 CAAGCAGTCTTAACAAATCACTAAGAT 58.275 33.333 0.00 0.00 39.09 2.40
598 628 9.944376 AAGCAGTCTTAACAAATCACTAAGATA 57.056 29.630 0.00 0.00 35.39 1.98
628 682 3.136626 CCCCTCCCTAATCCACTTGTTAG 59.863 52.174 0.00 0.00 0.00 2.34
634 688 7.014422 CCTCCCTAATCCACTTGTTAGTAGTAG 59.986 44.444 0.00 0.00 31.96 2.57
637 691 8.628280 CCCTAATCCACTTGTTAGTAGTAGTAC 58.372 40.741 0.00 0.00 31.96 2.73
785 871 0.859760 CTCTCCCTCTGGATCCTCCT 59.140 60.000 14.23 0.00 40.80 3.69
809 897 2.283676 TCCTCGTCCCCCACACTC 60.284 66.667 0.00 0.00 0.00 3.51
810 898 3.391382 CCTCGTCCCCCACACTCC 61.391 72.222 0.00 0.00 0.00 3.85
811 899 3.391382 CTCGTCCCCCACACTCCC 61.391 72.222 0.00 0.00 0.00 4.30
847 944 4.087892 CTGCTCCACTCCCCACCG 62.088 72.222 0.00 0.00 0.00 4.94
919 1016 4.711949 ACCGGGAAGCAGCAGCAG 62.712 66.667 6.32 0.00 45.49 4.24
993 1090 1.376466 GGAGTGGCTCAGCTTGGAA 59.624 57.895 0.00 0.00 31.08 3.53
994 1091 0.957888 GGAGTGGCTCAGCTTGGAAC 60.958 60.000 0.00 0.00 31.08 3.62
995 1092 0.250467 GAGTGGCTCAGCTTGGAACA 60.250 55.000 0.00 0.00 0.00 3.18
996 1093 0.536006 AGTGGCTCAGCTTGGAACAC 60.536 55.000 0.00 0.00 39.29 3.32
997 1094 0.536006 GTGGCTCAGCTTGGAACACT 60.536 55.000 0.00 0.00 39.29 3.55
1152 1255 1.139989 GCGCCCAGCTTTTCTTTTTC 58.860 50.000 0.00 0.00 44.04 2.29
1161 1264 2.862530 GCTTTTCTTTTTCACCTCGCCC 60.863 50.000 0.00 0.00 0.00 6.13
1175 1278 1.226773 CGCCCTGCTTAAATGCTGC 60.227 57.895 0.00 0.00 0.00 5.25
1178 1281 0.743097 CCCTGCTTAAATGCTGCTCC 59.257 55.000 0.00 0.00 0.00 4.70
1190 1293 1.949525 TGCTGCTCCTTTCTGACAAAC 59.050 47.619 0.00 0.00 0.00 2.93
1259 1362 0.623723 TCCTTTCCATTTCCTCCCCG 59.376 55.000 0.00 0.00 0.00 5.73
1260 1363 1.037579 CCTTTCCATTTCCTCCCCGC 61.038 60.000 0.00 0.00 0.00 6.13
1304 1407 1.097547 ATTTGGCCCTCGCATCTTCG 61.098 55.000 0.00 0.00 36.38 3.79
1309 1412 2.107141 CCTCGCATCTTCGGTCCC 59.893 66.667 0.00 0.00 0.00 4.46
1335 1438 5.526010 TCTTTCTCTTTCCGCGAAATTAC 57.474 39.130 8.23 0.00 30.85 1.89
1346 1449 2.286418 CGCGAAATTACTGCCCAAGATC 60.286 50.000 0.00 0.00 0.00 2.75
1366 1469 0.893270 CGATTGTTGTTCCCCAGCCA 60.893 55.000 0.00 0.00 0.00 4.75
1624 1765 2.106566 TCCAGATCTCACTCAAGCTCC 58.893 52.381 0.00 0.00 0.00 4.70
1634 1775 1.947597 CTCAAGCTCCGCTCTGCTCT 61.948 60.000 0.00 0.00 38.25 4.09
1643 1784 1.004080 GCTCTGCTCTTCACTGCCA 60.004 57.895 0.00 0.00 0.00 4.92
1644 1785 0.392729 GCTCTGCTCTTCACTGCCAT 60.393 55.000 0.00 0.00 0.00 4.40
1645 1786 1.949547 GCTCTGCTCTTCACTGCCATT 60.950 52.381 0.00 0.00 0.00 3.16
1646 1787 2.679059 GCTCTGCTCTTCACTGCCATTA 60.679 50.000 0.00 0.00 0.00 1.90
1647 1788 3.196463 CTCTGCTCTTCACTGCCATTAG 58.804 50.000 0.00 0.00 0.00 1.73
1648 1789 2.568956 TCTGCTCTTCACTGCCATTAGT 59.431 45.455 0.00 0.00 0.00 2.24
1649 1790 2.935201 CTGCTCTTCACTGCCATTAGTC 59.065 50.000 0.00 0.00 0.00 2.59
1650 1791 2.284190 GCTCTTCACTGCCATTAGTCC 58.716 52.381 0.00 0.00 0.00 3.85
1651 1792 2.355108 GCTCTTCACTGCCATTAGTCCA 60.355 50.000 0.00 0.00 0.00 4.02
1652 1793 3.265791 CTCTTCACTGCCATTAGTCCAC 58.734 50.000 0.00 0.00 0.00 4.02
1658 1799 0.767998 TGCCATTAGTCCACACCACA 59.232 50.000 0.00 0.00 0.00 4.17
1667 1808 1.623811 GTCCACACCACATACCTGTCT 59.376 52.381 0.00 0.00 31.62 3.41
1669 1810 1.902508 CCACACCACATACCTGTCTCT 59.097 52.381 0.00 0.00 31.62 3.10
1690 1831 4.749310 AGCTCAACGCGCTGGGAG 62.749 66.667 14.76 12.60 45.59 4.30
1692 1833 4.379243 CTCAACGCGCTGGGAGGT 62.379 66.667 2.43 0.00 0.00 3.85
1693 1834 2.992689 TCAACGCGCTGGGAGGTA 60.993 61.111 5.73 0.00 0.00 3.08
1694 1835 2.047655 CAACGCGCTGGGAGGTAA 60.048 61.111 5.73 0.00 0.00 2.85
1695 1836 1.669760 CAACGCGCTGGGAGGTAAA 60.670 57.895 5.73 0.00 0.00 2.01
1700 1860 1.912220 CGCTGGGAGGTAAATGGGA 59.088 57.895 0.00 0.00 0.00 4.37
1711 1871 2.943033 GGTAAATGGGATTCGGTGACTG 59.057 50.000 0.00 0.00 0.00 3.51
1712 1872 2.879103 AAATGGGATTCGGTGACTGT 57.121 45.000 0.00 0.00 0.00 3.55
1735 1895 9.442047 CTGTGATTTGTACTTTAATCTCCTCTT 57.558 33.333 13.35 0.00 33.08 2.85
1740 1900 9.883142 ATTTGTACTTTAATCTCCTCTTCAGAG 57.117 33.333 0.00 0.00 41.71 3.35
1860 2034 3.894427 AGTCAGTCAGTCATTCAGTCAGT 59.106 43.478 0.00 0.00 0.00 3.41
1861 2035 4.022416 AGTCAGTCAGTCATTCAGTCAGTC 60.022 45.833 0.00 0.00 0.00 3.51
1862 2036 3.891366 TCAGTCAGTCATTCAGTCAGTCA 59.109 43.478 0.00 0.00 0.00 3.41
1863 2037 4.022503 TCAGTCAGTCATTCAGTCAGTCAG 60.023 45.833 0.00 0.00 0.00 3.51
1864 2038 3.894427 AGTCAGTCATTCAGTCAGTCAGT 59.106 43.478 0.00 0.00 0.00 3.41
1900 2075 0.105913 AGGGAAAGGCCAACCGAAAA 60.106 50.000 5.01 0.00 42.76 2.29
1919 2094 7.754924 ACCGAAAATTTGTACTTGCATAATCTG 59.245 33.333 0.00 0.00 0.00 2.90
1928 2103 2.438868 TGCATAATCTGATCGGTCGG 57.561 50.000 0.00 0.00 0.00 4.79
1955 2130 0.039617 CCGAGATGAGACCGCTGATC 60.040 60.000 0.00 0.00 35.30 2.92
1979 2154 5.232838 CACGACGATCAGATGATGAATTTGA 59.767 40.000 0.00 0.00 42.53 2.69
1982 2157 6.345644 CGACGATCAGATGATGAATTTGACTC 60.346 42.308 0.00 0.00 42.53 3.36
1983 2158 5.757320 ACGATCAGATGATGAATTTGACTCC 59.243 40.000 0.00 0.00 42.53 3.85
1984 2159 5.756833 CGATCAGATGATGAATTTGACTCCA 59.243 40.000 0.00 0.00 42.53 3.86
2097 2272 7.333423 GTGCTGTTTCATTGTGTTATCTACCTA 59.667 37.037 0.00 0.00 0.00 3.08
2155 2330 0.675633 ATGTCTGTGTTTTGGGCAGC 59.324 50.000 0.00 0.00 0.00 5.25
2225 2400 4.561155 TGAGGAACCTCAGGGTCC 57.439 61.111 21.99 21.99 46.80 4.46
2281 2456 0.817013 CTCCTGAGCTGAGTGGACTC 59.183 60.000 0.00 0.00 43.15 3.36
2319 2494 4.875544 TGTAAGATACCGATTGCTTTGC 57.124 40.909 0.00 0.00 0.00 3.68
2320 2495 4.513442 TGTAAGATACCGATTGCTTTGCT 58.487 39.130 0.00 0.00 0.00 3.91
2322 2497 4.622701 AAGATACCGATTGCTTTGCTTC 57.377 40.909 0.00 0.00 0.00 3.86
2370 2545 5.615764 GCTGCTTCTTTGCTACTCAAACTAC 60.616 44.000 0.00 0.00 39.58 2.73
2371 2546 4.447724 TGCTTCTTTGCTACTCAAACTACG 59.552 41.667 0.00 0.00 39.58 3.51
2372 2547 4.143094 GCTTCTTTGCTACTCAAACTACGG 60.143 45.833 0.00 0.00 39.58 4.02
2373 2548 3.323243 TCTTTGCTACTCAAACTACGGC 58.677 45.455 0.00 0.00 39.58 5.68
2374 2549 2.823924 TTGCTACTCAAACTACGGCA 57.176 45.000 0.00 0.00 0.00 5.69
2375 2550 3.328382 TTGCTACTCAAACTACGGCAT 57.672 42.857 0.00 0.00 0.00 4.40
2376 2551 2.616960 TGCTACTCAAACTACGGCATG 58.383 47.619 0.00 0.00 0.00 4.06
2378 2553 3.000727 GCTACTCAAACTACGGCATGTT 58.999 45.455 0.00 0.00 0.00 2.71
2379 2554 3.435671 GCTACTCAAACTACGGCATGTTT 59.564 43.478 0.00 0.00 36.91 2.83
2493 2668 0.397941 TTGGACAGGAACAGGCTGAG 59.602 55.000 23.66 7.73 0.00 3.35
2506 2681 0.620556 GGCTGAGAGGGTCAATTCCA 59.379 55.000 0.00 0.00 33.60 3.53
2563 2738 2.346365 GGGTCGGTGACTTGTCCC 59.654 66.667 0.00 0.00 32.47 4.46
2602 2778 7.511959 TTCTGTATGGTGCTCAGTATAGTAG 57.488 40.000 0.00 0.00 0.00 2.57
2603 2779 6.004574 TCTGTATGGTGCTCAGTATAGTAGG 58.995 44.000 0.00 0.00 0.00 3.18
2604 2780 5.702266 TGTATGGTGCTCAGTATAGTAGGT 58.298 41.667 0.00 0.00 0.00 3.08
2610 2786 8.086143 TGGTGCTCAGTATAGTAGGTAAATTT 57.914 34.615 0.00 0.00 0.00 1.82
2611 2787 8.545472 TGGTGCTCAGTATAGTAGGTAAATTTT 58.455 33.333 0.00 0.00 0.00 1.82
2747 2956 4.901197 TGGCATAGGTTGAACTGAACTA 57.099 40.909 0.00 0.00 0.00 2.24
2772 2981 8.998277 ACAGAGTAATGGTTAGCTAGAATAGA 57.002 34.615 0.00 0.00 42.77 1.98
2782 2991 6.542735 GGTTAGCTAGAATAGAACCAAAAGGG 59.457 42.308 7.32 0.00 42.23 3.95
2791 3000 3.431415 AGAACCAAAAGGGCAAGTATCC 58.569 45.455 0.00 0.00 42.05 2.59
2794 3003 2.167662 CCAAAAGGGCAAGTATCCGTT 58.832 47.619 0.00 0.00 33.57 4.44
2795 3004 3.244981 ACCAAAAGGGCAAGTATCCGTTA 60.245 43.478 0.00 0.00 42.05 3.18
2801 3010 8.504005 CAAAAGGGCAAGTATCCGTTATAATAG 58.496 37.037 0.00 0.00 32.08 1.73
2820 3029 6.811253 AATAGTTGCTAAATTTGTCCACGA 57.189 33.333 0.00 0.00 0.00 4.35
2821 3034 6.811253 ATAGTTGCTAAATTTGTCCACGAA 57.189 33.333 0.00 0.00 0.00 3.85
2837 3050 5.457473 GTCCACGAACTTTTGTTACCATTTG 59.543 40.000 0.00 0.00 43.66 2.32
2839 3052 4.039032 ACGAACTTTTGTTACCATTTGCG 58.961 39.130 0.00 0.00 43.66 4.85
2847 3060 4.955925 TGTTACCATTTGCGGTTGATAG 57.044 40.909 0.00 0.00 40.67 2.08
2848 3061 4.580868 TGTTACCATTTGCGGTTGATAGA 58.419 39.130 0.00 0.00 40.67 1.98
2856 3069 4.944962 TTGCGGTTGATAGAATGTTCAG 57.055 40.909 0.00 0.00 0.00 3.02
2861 3074 6.428465 TGCGGTTGATAGAATGTTCAGTAAAA 59.572 34.615 0.00 0.00 0.00 1.52
2948 3169 0.878523 TTTGCTTCGTCAGGTCCACG 60.879 55.000 0.00 0.00 38.67 4.94
3087 3311 4.947388 GGCACTTCCCACTGTTATTATCAA 59.053 41.667 0.00 0.00 0.00 2.57
3162 3386 2.102252 CTGCTTCCAGGATGAGTACTCC 59.898 54.545 20.11 5.97 39.69 3.85
3186 3410 2.474526 CCGACAACGTGCTCATCAAATC 60.475 50.000 0.00 0.00 37.88 2.17
3327 3553 4.393062 AGAAGTACGGAACATCATGCTTTG 59.607 41.667 0.00 0.00 0.00 2.77
3393 3720 1.680860 CCATCACTGCTCATGAGGCAA 60.681 52.381 23.89 8.32 39.30 4.52
3394 3721 1.400846 CATCACTGCTCATGAGGCAAC 59.599 52.381 23.89 7.91 39.30 4.17
3395 3722 0.397564 TCACTGCTCATGAGGCAACA 59.602 50.000 23.89 12.06 39.30 3.33
3396 3723 0.520404 CACTGCTCATGAGGCAACAC 59.480 55.000 23.89 6.82 39.30 3.32
3397 3724 0.399454 ACTGCTCATGAGGCAACACT 59.601 50.000 23.89 0.29 39.30 3.55
3398 3725 1.202855 ACTGCTCATGAGGCAACACTT 60.203 47.619 23.89 0.00 39.30 3.16
3399 3726 1.884579 CTGCTCATGAGGCAACACTTT 59.115 47.619 23.89 0.00 39.30 2.66
3400 3727 2.295349 CTGCTCATGAGGCAACACTTTT 59.705 45.455 23.89 0.00 39.30 2.27
3401 3728 2.694628 TGCTCATGAGGCAACACTTTTT 59.305 40.909 23.89 0.00 36.71 1.94
3421 3748 4.513198 TTTCCCCTTTTATCTGCAAACG 57.487 40.909 0.00 0.00 0.00 3.60
3422 3749 3.149005 TCCCCTTTTATCTGCAAACGT 57.851 42.857 0.00 0.00 0.00 3.99
3423 3750 4.289238 TCCCCTTTTATCTGCAAACGTA 57.711 40.909 0.00 0.00 0.00 3.57
3424 3751 4.653868 TCCCCTTTTATCTGCAAACGTAA 58.346 39.130 0.00 0.00 0.00 3.18
3425 3752 5.258051 TCCCCTTTTATCTGCAAACGTAAT 58.742 37.500 0.00 0.00 0.00 1.89
3426 3753 5.712917 TCCCCTTTTATCTGCAAACGTAATT 59.287 36.000 0.00 0.00 0.00 1.40
3427 3754 5.804979 CCCCTTTTATCTGCAAACGTAATTG 59.195 40.000 0.00 0.00 0.00 2.32
3428 3755 6.386654 CCCTTTTATCTGCAAACGTAATTGT 58.613 36.000 2.19 0.00 32.80 2.71
3429 3756 6.526674 CCCTTTTATCTGCAAACGTAATTGTC 59.473 38.462 2.19 0.00 32.80 3.18
3430 3757 6.526674 CCTTTTATCTGCAAACGTAATTGTCC 59.473 38.462 2.19 0.00 32.80 4.02
3431 3758 6.811253 TTTATCTGCAAACGTAATTGTCCT 57.189 33.333 2.19 0.00 32.80 3.85
3432 3759 6.811253 TTATCTGCAAACGTAATTGTCCTT 57.189 33.333 2.19 0.00 32.80 3.36
3433 3760 5.705609 ATCTGCAAACGTAATTGTCCTTT 57.294 34.783 2.19 0.00 32.80 3.11
3434 3761 6.811253 ATCTGCAAACGTAATTGTCCTTTA 57.189 33.333 2.19 0.00 32.80 1.85
3435 3762 6.621316 TCTGCAAACGTAATTGTCCTTTAA 57.379 33.333 2.19 0.00 32.80 1.52
3436 3763 7.028926 TCTGCAAACGTAATTGTCCTTTAAA 57.971 32.000 2.19 0.00 32.80 1.52
3437 3764 7.653647 TCTGCAAACGTAATTGTCCTTTAAAT 58.346 30.769 2.19 0.00 32.80 1.40
3438 3765 8.138712 TCTGCAAACGTAATTGTCCTTTAAATT 58.861 29.630 2.19 0.00 32.80 1.82
3439 3766 9.400638 CTGCAAACGTAATTGTCCTTTAAATTA 57.599 29.630 2.19 0.00 32.80 1.40
3440 3767 9.182933 TGCAAACGTAATTGTCCTTTAAATTAC 57.817 29.630 2.19 7.80 42.15 1.89
3441 3768 9.182933 GCAAACGTAATTGTCCTTTAAATTACA 57.817 29.630 14.97 4.12 44.20 2.41
3452 3779 8.875803 TGTCCTTTAAATTACACTACTTATGCG 58.124 33.333 0.00 0.00 0.00 4.73
3453 3780 9.090692 GTCCTTTAAATTACACTACTTATGCGA 57.909 33.333 0.00 0.00 0.00 5.10
3454 3781 9.090692 TCCTTTAAATTACACTACTTATGCGAC 57.909 33.333 0.00 0.00 0.00 5.19
3455 3782 8.875803 CCTTTAAATTACACTACTTATGCGACA 58.124 33.333 0.00 0.00 0.00 4.35
3458 3785 6.844696 AATTACACTACTTATGCGACATGG 57.155 37.500 0.00 0.00 0.00 3.66
3459 3786 2.550978 ACACTACTTATGCGACATGGC 58.449 47.619 0.00 0.00 0.00 4.40
3643 4272 1.842052 TAAAGGGATTCAAACGCCCC 58.158 50.000 0.00 0.00 43.08 5.80
3769 4398 1.584380 CTGCCTCCAGAAGCTGCAAC 61.584 60.000 1.02 0.00 41.77 4.17
3793 4422 9.930693 AACCTAAAGCCTTCTATAAGAATATCG 57.069 33.333 0.00 0.00 33.13 2.92
3857 4486 8.665685 CAGTACTCATTGGTTGGTATTAACTTC 58.334 37.037 0.00 0.00 0.00 3.01
3894 4524 8.208718 TGATTACTTGGTCTAACATATGTTGC 57.791 34.615 27.62 17.63 38.90 4.17
3929 4563 6.446781 TCATTCATGCTTTTCTCAGATTCC 57.553 37.500 0.00 0.00 0.00 3.01
4295 4940 2.430332 CAGAGAGAGTGACCCATTCTCC 59.570 54.545 13.50 7.46 44.66 3.71
4302 4947 0.548031 TGACCCATTCTCCAGGATGC 59.452 55.000 0.00 0.00 31.97 3.91
4584 5236 6.203338 TGAACTCCAATTCAGTTTACGTTACC 59.797 38.462 0.00 0.00 34.10 2.85
4615 5267 1.033746 CCCCAAGGTACTGCATGCTG 61.034 60.000 21.60 21.60 40.86 4.41
4639 5291 6.718454 TGTGCTTTTACCTGTAGACTAGTACT 59.282 38.462 0.00 0.00 0.00 2.73
4640 5292 7.094463 TGTGCTTTTACCTGTAGACTAGTACTC 60.094 40.741 0.00 0.00 0.00 2.59
4690 5344 6.353404 TGAATACAGTGTCTAACATGGTGA 57.647 37.500 0.00 0.00 0.00 4.02
4778 5432 1.134848 GGCCACTTCAACAACAAAGCA 60.135 47.619 0.00 0.00 0.00 3.91
4925 5581 1.219393 GGTAGACTGGGTGAGCAGC 59.781 63.158 0.00 0.00 0.00 5.25
4959 5615 6.149308 TCAACCTCATTGTAATAACAGTGCAG 59.851 38.462 0.00 0.00 41.69 4.41
4960 5616 4.396166 ACCTCATTGTAATAACAGTGCAGC 59.604 41.667 0.00 0.00 41.69 5.25
4961 5617 4.395854 CCTCATTGTAATAACAGTGCAGCA 59.604 41.667 0.00 0.00 41.69 4.41
4962 5618 5.106197 CCTCATTGTAATAACAGTGCAGCAA 60.106 40.000 0.00 0.00 41.69 3.91
4978 5634 4.453478 TGCAGCAAGTCTTACTCAAAGATG 59.547 41.667 0.00 0.00 45.84 2.90
5040 5699 6.773976 TTCACCAACTGAAGAAGTCATTTT 57.226 33.333 0.00 0.00 38.56 1.82
5046 5705 4.075763 CTGAAGAAGTCATTTTCAGCGG 57.924 45.455 1.09 0.00 40.71 5.52
5148 5807 3.003763 GGGAAGCTGGTCGACCCT 61.004 66.667 31.19 19.17 37.75 4.34
5354 6021 2.716828 CGTTGTAGCACACGCCTCG 61.717 63.158 0.00 0.00 39.83 4.63
5355 6022 2.736995 TTGTAGCACACGCCTCGC 60.737 61.111 0.00 0.00 39.83 5.03
5356 6023 4.735132 TGTAGCACACGCCTCGCC 62.735 66.667 0.00 0.00 39.83 5.54
5357 6024 4.436998 GTAGCACACGCCTCGCCT 62.437 66.667 0.00 0.00 39.83 5.52
5358 6025 4.129737 TAGCACACGCCTCGCCTC 62.130 66.667 0.00 0.00 39.83 4.70
5378 6045 1.405821 CACCTCGTCCCACTGTAGATC 59.594 57.143 0.00 0.00 0.00 2.75
5387 6054 3.830178 TCCCACTGTAGATCTTCGTCAAA 59.170 43.478 0.00 0.00 0.00 2.69
5445 6112 0.251916 CCTTGTTGGCTCCACGGATA 59.748 55.000 0.00 0.00 0.00 2.59
5463 6264 0.602638 TACGACTTGCCCAGCAGTTG 60.603 55.000 0.00 0.00 40.61 3.16
5501 6302 3.462982 TGTGTGCCTTAGTTGTAGTGTG 58.537 45.455 0.00 0.00 0.00 3.82
5507 6308 3.741344 GCCTTAGTTGTAGTGTGAGTGTG 59.259 47.826 0.00 0.00 0.00 3.82
5553 6355 4.217118 GCTCCTTGTCTGAAATGATGTTGT 59.783 41.667 0.00 0.00 0.00 3.32
5554 6356 5.694231 TCCTTGTCTGAAATGATGTTGTG 57.306 39.130 0.00 0.00 0.00 3.33
5566 6368 2.358582 TGATGTTGTGCCTTGTGTGAAG 59.641 45.455 0.00 0.00 0.00 3.02
5567 6369 1.102154 TGTTGTGCCTTGTGTGAAGG 58.898 50.000 0.00 0.00 40.39 3.46
5583 6385 6.153680 TGTGTGAAGGGTTGTTTTTCAGTTAT 59.846 34.615 0.00 0.00 32.00 1.89
5584 6386 7.339721 TGTGTGAAGGGTTGTTTTTCAGTTATA 59.660 33.333 0.00 0.00 32.00 0.98
5585 6387 8.192110 GTGTGAAGGGTTGTTTTTCAGTTATAA 58.808 33.333 0.00 0.00 32.00 0.98
5586 6388 8.919145 TGTGAAGGGTTGTTTTTCAGTTATAAT 58.081 29.630 0.00 0.00 32.00 1.28
5627 6430 5.679601 GATGCTTTTCCCTAGATCTTCTGT 58.320 41.667 0.00 0.00 0.00 3.41
5637 6440 3.540314 AGATCTTCTGTGATGGTCTGC 57.460 47.619 0.00 0.00 28.21 4.26
5638 6441 2.836372 AGATCTTCTGTGATGGTCTGCA 59.164 45.455 0.00 0.00 28.21 4.41
5639 6442 3.455177 AGATCTTCTGTGATGGTCTGCAT 59.545 43.478 0.00 0.00 28.21 3.96
5640 6443 3.708403 TCTTCTGTGATGGTCTGCATT 57.292 42.857 0.00 0.00 0.00 3.56
5641 6444 3.340928 TCTTCTGTGATGGTCTGCATTG 58.659 45.455 0.00 0.00 0.00 2.82
5642 6445 3.008266 TCTTCTGTGATGGTCTGCATTGA 59.992 43.478 0.00 0.00 0.00 2.57
5643 6446 2.703416 TCTGTGATGGTCTGCATTGAC 58.297 47.619 0.00 0.00 36.31 3.18
5644 6447 1.395954 CTGTGATGGTCTGCATTGACG 59.604 52.381 0.49 0.00 37.81 4.35
5645 6448 0.729116 GTGATGGTCTGCATTGACGG 59.271 55.000 0.49 0.00 37.81 4.79
5646 6449 0.324614 TGATGGTCTGCATTGACGGT 59.675 50.000 0.49 0.00 37.81 4.83
5647 6450 1.009829 GATGGTCTGCATTGACGGTC 58.990 55.000 0.00 0.00 37.81 4.79
5648 6451 0.615331 ATGGTCTGCATTGACGGTCT 59.385 50.000 9.88 0.00 37.81 3.85
5649 6452 0.396435 TGGTCTGCATTGACGGTCTT 59.604 50.000 9.88 0.00 37.81 3.01
5656 6459 2.890311 TGCATTGACGGTCTTTTGGAAT 59.110 40.909 9.88 0.00 0.00 3.01
5661 6464 2.227194 GACGGTCTTTTGGAATGGTGT 58.773 47.619 0.00 0.00 0.00 4.16
5679 6482 2.032634 TGGTTCGACGCAATGGCTC 61.033 57.895 0.00 0.00 38.10 4.70
5694 7746 1.748122 GCTCACCACCCTGCAGATG 60.748 63.158 17.39 13.04 0.00 2.90
5696 7748 0.392193 CTCACCACCCTGCAGATGAC 60.392 60.000 17.39 0.00 0.00 3.06
5724 7776 0.250553 TTTCGCTCCGGACATTGGTT 60.251 50.000 0.00 0.00 0.00 3.67
5726 7778 1.671054 CGCTCCGGACATTGGTTGT 60.671 57.895 0.00 0.00 42.79 3.32
5810 7882 1.481772 AGTTTGAAAGCTGGCTGCAAA 59.518 42.857 18.84 15.08 45.94 3.68
5817 7889 2.205022 AGCTGGCTGCAAAATGTAGA 57.795 45.000 18.84 0.00 45.94 2.59
5851 7923 1.035139 AGTTTGGAAGTTGGCTGCAG 58.965 50.000 10.11 10.11 0.00 4.41
5890 8699 2.203538 ACCAGGCTTGCCACTTGG 60.204 61.111 14.54 14.49 38.53 3.61
5899 8708 1.462731 TTGCCACTTGGGTGCATCAC 61.463 55.000 0.00 0.00 41.75 3.06
5924 8733 8.133627 ACAAGTGCATTCTTATCAGATAAATGC 58.866 33.333 22.61 22.61 38.51 3.56
5929 8738 7.094075 TGCATTCTTATCAGATAAATGCCCATC 60.094 37.037 24.65 8.65 37.81 3.51
5937 8746 5.708697 TCAGATAAATGCCCATCATCATCAC 59.291 40.000 5.93 0.00 33.40 3.06
5958 8773 2.280389 CACCGATCGGCTCCCATG 60.280 66.667 33.62 19.13 39.32 3.66
5967 8782 4.477413 GCTCCCATGCCATCTCTG 57.523 61.111 0.00 0.00 0.00 3.35
5969 8784 1.597302 CTCCCATGCCATCTCTGCG 60.597 63.158 0.00 0.00 0.00 5.18
5970 8785 2.191375 CCCATGCCATCTCTGCGT 59.809 61.111 0.00 0.00 0.00 5.24
5971 8786 2.184830 CCCATGCCATCTCTGCGTG 61.185 63.158 0.00 0.00 43.70 5.34
5972 8787 1.450848 CCATGCCATCTCTGCGTGT 60.451 57.895 4.03 0.00 42.79 4.49
5979 8794 2.095059 GCCATCTCTGCGTGTGAAAAAT 60.095 45.455 0.00 0.00 0.00 1.82
6015 8830 0.242825 TCATCTGCAAGCAAGCAAGC 59.757 50.000 4.63 0.00 45.13 4.01
6016 8831 0.038618 CATCTGCAAGCAAGCAAGCA 60.039 50.000 10.24 10.24 45.13 3.91
6017 8832 0.677288 ATCTGCAAGCAAGCAAGCAA 59.323 45.000 11.48 5.10 45.13 3.91
6018 8833 0.031585 TCTGCAAGCAAGCAAGCAAG 59.968 50.000 11.48 7.13 45.13 4.01
6019 8834 1.557443 CTGCAAGCAAGCAAGCAAGC 61.557 55.000 11.48 6.65 45.13 4.01
6020 8835 1.593209 GCAAGCAAGCAAGCAAGCA 60.593 52.632 10.52 0.00 36.81 3.91
6021 8836 1.155424 GCAAGCAAGCAAGCAAGCAA 61.155 50.000 10.52 0.00 36.81 3.91
6022 8837 0.859232 CAAGCAAGCAAGCAAGCAAG 59.141 50.000 10.52 0.00 36.85 4.01
6034 8849 1.949525 GCAAGCAAGACTGACTCCAAA 59.050 47.619 0.00 0.00 0.00 3.28
6090 8938 5.277538 CCAAGAGAGTAGTGTGCTTGTTTTC 60.278 44.000 0.00 0.00 35.41 2.29
6091 8939 4.381411 AGAGAGTAGTGTGCTTGTTTTCC 58.619 43.478 0.00 0.00 0.00 3.13
6093 8941 4.781934 AGAGTAGTGTGCTTGTTTTCCTT 58.218 39.130 0.00 0.00 0.00 3.36
6096 8944 1.756538 AGTGTGCTTGTTTTCCTTGGG 59.243 47.619 0.00 0.00 0.00 4.12
6097 8945 0.463620 TGTGCTTGTTTTCCTTGGGC 59.536 50.000 0.00 0.00 0.00 5.36
6098 8946 0.752658 GTGCTTGTTTTCCTTGGGCT 59.247 50.000 0.00 0.00 0.00 5.19
6099 8947 0.752054 TGCTTGTTTTCCTTGGGCTG 59.248 50.000 0.00 0.00 0.00 4.85
6100 8948 0.033920 GCTTGTTTTCCTTGGGCTGG 59.966 55.000 0.00 0.00 0.00 4.85
6101 8949 0.033920 CTTGTTTTCCTTGGGCTGGC 59.966 55.000 0.00 0.00 0.00 4.85
6102 8950 0.689080 TTGTTTTCCTTGGGCTGGCA 60.689 50.000 2.88 0.00 0.00 4.92
6103 8951 1.114722 TGTTTTCCTTGGGCTGGCAG 61.115 55.000 10.94 10.94 0.00 4.85
6189 9047 1.152777 CAAGTGGTGGTCCTTGCCA 60.153 57.895 0.00 0.00 32.46 4.92
6239 9101 4.063689 AGAGATCTCAGTGCAAGTGTTTG 58.936 43.478 24.39 0.00 38.75 2.93
6256 9118 0.963856 TTGCAGCTGAATCAGGCCAG 60.964 55.000 20.43 0.00 31.21 4.85
6262 9127 0.809385 CTGAATCAGGCCAGCACTTG 59.191 55.000 5.01 0.00 0.00 3.16
6277 9142 2.353889 GCACTTGCCAGTCATATCACAG 59.646 50.000 0.00 0.00 34.31 3.66
6335 9202 1.772836 AGAGATCATTGCCAAAGCCC 58.227 50.000 0.00 0.00 38.69 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.971695 CCCCACTCAAAGTTCCGGC 60.972 63.158 0.00 0.00 0.00 6.13
1 2 0.889186 CACCCCACTCAAAGTTCCGG 60.889 60.000 0.00 0.00 0.00 5.14
2 3 0.107831 TCACCCCACTCAAAGTTCCG 59.892 55.000 0.00 0.00 0.00 4.30
3 4 1.420138 TCTCACCCCACTCAAAGTTCC 59.580 52.381 0.00 0.00 0.00 3.62
4 5 2.930826 TCTCACCCCACTCAAAGTTC 57.069 50.000 0.00 0.00 0.00 3.01
5 6 2.815589 GCATCTCACCCCACTCAAAGTT 60.816 50.000 0.00 0.00 0.00 2.66
6 7 1.271597 GCATCTCACCCCACTCAAAGT 60.272 52.381 0.00 0.00 0.00 2.66
7 8 1.457346 GCATCTCACCCCACTCAAAG 58.543 55.000 0.00 0.00 0.00 2.77
8 9 0.321564 CGCATCTCACCCCACTCAAA 60.322 55.000 0.00 0.00 0.00 2.69
9 10 1.296392 CGCATCTCACCCCACTCAA 59.704 57.895 0.00 0.00 0.00 3.02
10 11 2.981302 CGCATCTCACCCCACTCA 59.019 61.111 0.00 0.00 0.00 3.41
11 12 2.512515 GCGCATCTCACCCCACTC 60.513 66.667 0.30 0.00 0.00 3.51
12 13 4.457496 CGCGCATCTCACCCCACT 62.457 66.667 8.75 0.00 0.00 4.00
15 16 4.778143 AACCGCGCATCTCACCCC 62.778 66.667 8.75 0.00 0.00 4.95
16 17 3.499737 CAACCGCGCATCTCACCC 61.500 66.667 8.75 0.00 0.00 4.61
17 18 3.499737 CCAACCGCGCATCTCACC 61.500 66.667 8.75 0.00 0.00 4.02
18 19 1.766143 GATCCAACCGCGCATCTCAC 61.766 60.000 8.75 0.00 0.00 3.51
19 20 1.521457 GATCCAACCGCGCATCTCA 60.521 57.895 8.75 0.00 0.00 3.27
20 21 2.247437 GGATCCAACCGCGCATCTC 61.247 63.158 8.75 0.00 0.00 2.75
21 22 2.203070 GGATCCAACCGCGCATCT 60.203 61.111 8.75 0.00 0.00 2.90
22 23 2.513666 TGGATCCAACCGCGCATC 60.514 61.111 13.46 0.71 0.00 3.91
23 24 2.514592 CTGGATCCAACCGCGCAT 60.515 61.111 17.00 0.00 0.00 4.73
24 25 3.545124 AACTGGATCCAACCGCGCA 62.545 57.895 17.00 0.00 0.00 6.09
25 26 2.746277 AACTGGATCCAACCGCGC 60.746 61.111 17.00 0.00 0.00 6.86
26 27 1.361668 CTCAACTGGATCCAACCGCG 61.362 60.000 17.00 6.12 0.00 6.46
27 28 1.648467 GCTCAACTGGATCCAACCGC 61.648 60.000 17.00 10.26 0.00 5.68
28 29 0.036010 AGCTCAACTGGATCCAACCG 60.036 55.000 17.00 6.93 0.00 4.44
29 30 1.457346 CAGCTCAACTGGATCCAACC 58.543 55.000 17.00 0.68 43.19 3.77
38 39 1.302832 GACCACCCCAGCTCAACTG 60.303 63.158 0.00 0.00 46.77 3.16
39 40 1.462238 AGACCACCCCAGCTCAACT 60.462 57.895 0.00 0.00 0.00 3.16
40 41 1.003233 GAGACCACCCCAGCTCAAC 60.003 63.158 0.00 0.00 0.00 3.18
41 42 2.224159 GGAGACCACCCCAGCTCAA 61.224 63.158 0.00 0.00 0.00 3.02
42 43 2.607750 GGAGACCACCCCAGCTCA 60.608 66.667 0.00 0.00 0.00 4.26
43 44 3.775654 CGGAGACCACCCCAGCTC 61.776 72.222 0.00 0.00 0.00 4.09
63 64 3.787001 GTCCTCCCTTGCCTCCCG 61.787 72.222 0.00 0.00 0.00 5.14
64 65 2.285743 AGTCCTCCCTTGCCTCCC 60.286 66.667 0.00 0.00 0.00 4.30
65 66 2.674220 CCAGTCCTCCCTTGCCTCC 61.674 68.421 0.00 0.00 0.00 4.30
66 67 2.674220 CCCAGTCCTCCCTTGCCTC 61.674 68.421 0.00 0.00 0.00 4.70
67 68 2.612115 CCCAGTCCTCCCTTGCCT 60.612 66.667 0.00 0.00 0.00 4.75
68 69 2.610859 TCCCAGTCCTCCCTTGCC 60.611 66.667 0.00 0.00 0.00 4.52
69 70 2.674220 CCTCCCAGTCCTCCCTTGC 61.674 68.421 0.00 0.00 0.00 4.01
70 71 2.674220 GCCTCCCAGTCCTCCCTTG 61.674 68.421 0.00 0.00 0.00 3.61
71 72 2.285743 GCCTCCCAGTCCTCCCTT 60.286 66.667 0.00 0.00 0.00 3.95
72 73 3.194025 TTGCCTCCCAGTCCTCCCT 62.194 63.158 0.00 0.00 0.00 4.20
73 74 2.610859 TTGCCTCCCAGTCCTCCC 60.611 66.667 0.00 0.00 0.00 4.30
74 75 2.674220 CCTTGCCTCCCAGTCCTCC 61.674 68.421 0.00 0.00 0.00 4.30
75 76 2.674220 CCCTTGCCTCCCAGTCCTC 61.674 68.421 0.00 0.00 0.00 3.71
76 77 2.612115 CCCTTGCCTCCCAGTCCT 60.612 66.667 0.00 0.00 0.00 3.85
77 78 1.789576 TTTCCCTTGCCTCCCAGTCC 61.790 60.000 0.00 0.00 0.00 3.85
78 79 0.322906 CTTTCCCTTGCCTCCCAGTC 60.323 60.000 0.00 0.00 0.00 3.51
79 80 1.770324 CTTTCCCTTGCCTCCCAGT 59.230 57.895 0.00 0.00 0.00 4.00
80 81 1.000396 CCTTTCCCTTGCCTCCCAG 60.000 63.158 0.00 0.00 0.00 4.45
81 82 1.368268 AACCTTTCCCTTGCCTCCCA 61.368 55.000 0.00 0.00 0.00 4.37
82 83 0.612174 GAACCTTTCCCTTGCCTCCC 60.612 60.000 0.00 0.00 0.00 4.30
83 84 0.612174 GGAACCTTTCCCTTGCCTCC 60.612 60.000 0.00 0.00 44.30 4.30
84 85 2.962882 GGAACCTTTCCCTTGCCTC 58.037 57.895 0.00 0.00 44.30 4.70
103 104 1.792949 GCCATGTACGCCTTATCGAAG 59.207 52.381 0.00 0.00 0.00 3.79
104 105 1.860676 GCCATGTACGCCTTATCGAA 58.139 50.000 0.00 0.00 0.00 3.71
105 106 0.318360 CGCCATGTACGCCTTATCGA 60.318 55.000 0.00 0.00 0.00 3.59
106 107 1.282248 CCGCCATGTACGCCTTATCG 61.282 60.000 0.09 0.00 0.00 2.92
107 108 0.032952 TCCGCCATGTACGCCTTATC 59.967 55.000 0.09 0.00 0.00 1.75
108 109 0.033504 CTCCGCCATGTACGCCTTAT 59.966 55.000 0.09 0.00 0.00 1.73
109 110 1.440060 CTCCGCCATGTACGCCTTA 59.560 57.895 0.09 0.00 0.00 2.69
110 111 2.186903 CTCCGCCATGTACGCCTT 59.813 61.111 0.09 0.00 0.00 4.35
111 112 4.530857 GCTCCGCCATGTACGCCT 62.531 66.667 0.09 0.00 0.00 5.52
112 113 4.530857 AGCTCCGCCATGTACGCC 62.531 66.667 0.09 0.00 0.00 5.68
113 114 2.962253 GAGCTCCGCCATGTACGC 60.962 66.667 0.87 0.00 0.00 4.42
114 115 2.279517 GGAGCTCCGCCATGTACG 60.280 66.667 19.06 0.00 0.00 3.67
115 116 1.521681 GTGGAGCTCCGCCATGTAC 60.522 63.158 32.30 17.23 40.56 2.90
116 117 2.900273 GTGGAGCTCCGCCATGTA 59.100 61.111 32.30 8.90 40.56 2.29
124 125 2.442272 TAGAGGCGGTGGAGCTCC 60.442 66.667 26.78 26.78 37.29 4.70
125 126 2.494530 CCTAGAGGCGGTGGAGCTC 61.495 68.421 4.71 4.71 37.29 4.09
126 127 2.443016 CCTAGAGGCGGTGGAGCT 60.443 66.667 0.00 0.00 37.29 4.09
157 158 4.038282 TCGTTGACTGCTTTTACTCCACTA 59.962 41.667 0.00 0.00 0.00 2.74
162 163 3.495001 AGCTTCGTTGACTGCTTTTACTC 59.505 43.478 0.00 0.00 30.96 2.59
164 165 3.879932 AGCTTCGTTGACTGCTTTTAC 57.120 42.857 0.00 0.00 30.96 2.01
177 178 0.595095 ACCGTCGAGTAAAGCTTCGT 59.405 50.000 0.00 0.00 0.00 3.85
179 180 5.167218 AGTATACCGTCGAGTAAAGCTTC 57.833 43.478 0.00 0.00 0.00 3.86
191 192 5.279356 CCTGAAAATAGGGGAGTATACCGTC 60.279 48.000 0.00 0.00 34.06 4.79
192 193 4.591924 CCTGAAAATAGGGGAGTATACCGT 59.408 45.833 0.00 0.00 34.06 4.83
204 205 1.421646 AGCCGATCCCCTGAAAATAGG 59.578 52.381 0.00 0.00 37.59 2.57
212 213 2.461695 ACATATCTAGCCGATCCCCTG 58.538 52.381 0.00 0.00 33.48 4.45
228 229 6.262193 TGAGACGTGAGATGTAACAACATA 57.738 37.500 0.00 0.00 0.00 2.29
232 233 4.462834 AGGATGAGACGTGAGATGTAACAA 59.537 41.667 0.00 0.00 0.00 2.83
234 235 4.640789 AGGATGAGACGTGAGATGTAAC 57.359 45.455 0.00 0.00 0.00 2.50
240 246 5.732528 GCGTTTATAAGGATGAGACGTGAGA 60.733 44.000 0.00 0.00 0.00 3.27
241 247 4.441415 GCGTTTATAAGGATGAGACGTGAG 59.559 45.833 0.00 0.00 0.00 3.51
242 248 4.357142 GCGTTTATAAGGATGAGACGTGA 58.643 43.478 0.00 0.00 0.00 4.35
243 249 3.179795 CGCGTTTATAAGGATGAGACGTG 59.820 47.826 0.00 4.67 34.07 4.49
244 250 3.369385 CGCGTTTATAAGGATGAGACGT 58.631 45.455 0.00 0.00 0.00 4.34
245 251 2.724690 CCGCGTTTATAAGGATGAGACG 59.275 50.000 4.92 0.40 0.00 4.18
246 252 3.057734 CCCGCGTTTATAAGGATGAGAC 58.942 50.000 4.92 0.00 0.00 3.36
255 261 1.968703 GCGTGTGCCCGCGTTTATAA 61.969 55.000 4.92 0.00 46.08 0.98
278 284 3.057969 TGAAGGTGCTCATGGTAACTG 57.942 47.619 0.00 0.00 37.61 3.16
280 286 4.518970 TCTTTTGAAGGTGCTCATGGTAAC 59.481 41.667 0.00 0.00 0.00 2.50
319 325 3.735591 TCAAACGGTAGGGAAGACTTTG 58.264 45.455 0.00 0.00 0.00 2.77
320 326 4.286291 AGATCAAACGGTAGGGAAGACTTT 59.714 41.667 0.00 0.00 0.00 2.66
321 327 3.838903 AGATCAAACGGTAGGGAAGACTT 59.161 43.478 0.00 0.00 0.00 3.01
324 330 3.700038 GAGAGATCAAACGGTAGGGAAGA 59.300 47.826 0.00 0.00 0.00 2.87
325 331 3.702045 AGAGAGATCAAACGGTAGGGAAG 59.298 47.826 0.00 0.00 0.00 3.46
333 356 2.928757 CAGCTTGAGAGAGATCAAACGG 59.071 50.000 0.00 0.00 38.66 4.44
334 357 2.348059 GCAGCTTGAGAGAGATCAAACG 59.652 50.000 0.00 0.00 38.66 3.60
364 387 6.925718 CCTCCACTTCCATTTCTTTTCTTTTC 59.074 38.462 0.00 0.00 0.00 2.29
365 388 6.611236 TCCTCCACTTCCATTTCTTTTCTTTT 59.389 34.615 0.00 0.00 0.00 2.27
366 389 6.040955 GTCCTCCACTTCCATTTCTTTTCTTT 59.959 38.462 0.00 0.00 0.00 2.52
367 390 5.536538 GTCCTCCACTTCCATTTCTTTTCTT 59.463 40.000 0.00 0.00 0.00 2.52
368 391 5.073428 GTCCTCCACTTCCATTTCTTTTCT 58.927 41.667 0.00 0.00 0.00 2.52
369 392 4.218635 GGTCCTCCACTTCCATTTCTTTTC 59.781 45.833 0.00 0.00 0.00 2.29
408 431 3.374745 GTTGTGATTTGACTGTGCCTTG 58.625 45.455 0.00 0.00 0.00 3.61
413 436 3.489059 GGTGTGGTTGTGATTTGACTGTG 60.489 47.826 0.00 0.00 0.00 3.66
419 442 3.005367 GGGTAAGGTGTGGTTGTGATTTG 59.995 47.826 0.00 0.00 0.00 2.32
428 451 1.540617 GGAGGGGGTAAGGTGTGGT 60.541 63.158 0.00 0.00 0.00 4.16
445 468 4.530161 TCTTCTTCTTCTTCTTGGAGAGGG 59.470 45.833 0.00 0.00 0.00 4.30
448 471 6.985653 TCTTCTTCTTCTTCTTCTTGGAGA 57.014 37.500 0.00 0.00 0.00 3.71
453 476 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
454 477 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
455 478 9.710900 ATCTTCTTCTTCTTCTTCTTCTTCTTC 57.289 33.333 0.00 0.00 0.00 2.87
457 480 9.710900 GAATCTTCTTCTTCTTCTTCTTCTTCT 57.289 33.333 0.00 0.00 0.00 2.85
458 481 9.487790 TGAATCTTCTTCTTCTTCTTCTTCTTC 57.512 33.333 0.00 0.00 0.00 2.87
459 482 9.844257 TTGAATCTTCTTCTTCTTCTTCTTCTT 57.156 29.630 0.00 0.00 0.00 2.52
460 483 9.492973 CTTGAATCTTCTTCTTCTTCTTCTTCT 57.507 33.333 0.00 0.00 0.00 2.85
461 484 9.487790 TCTTGAATCTTCTTCTTCTTCTTCTTC 57.512 33.333 0.00 0.00 0.00 2.87
462 485 9.844257 TTCTTGAATCTTCTTCTTCTTCTTCTT 57.156 29.630 0.00 0.00 0.00 2.52
463 486 9.492973 CTTCTTGAATCTTCTTCTTCTTCTTCT 57.507 33.333 0.00 0.00 0.00 2.85
538 566 2.435586 CCTGCTGGTCTTGCGGAG 60.436 66.667 0.51 0.00 38.99 4.63
542 570 1.003355 TACTGCCTGCTGGTCTTGC 60.003 57.895 11.69 0.00 35.27 4.01
552 582 2.029288 CCGTGTGTGCTACTGCCTG 61.029 63.158 0.00 0.00 38.71 4.85
589 619 6.068140 AGGGAGGGGGTATCTATATCTTAGTG 60.068 46.154 0.00 0.00 0.00 2.74
593 623 7.369769 GGATTAGGGAGGGGGTATCTATATCTT 60.370 44.444 0.00 0.00 0.00 2.40
594 624 6.106494 GGATTAGGGAGGGGGTATCTATATCT 59.894 46.154 0.00 0.00 0.00 1.98
595 625 6.125561 TGGATTAGGGAGGGGGTATCTATATC 60.126 46.154 0.00 0.00 0.00 1.63
596 626 5.751754 TGGATTAGGGAGGGGGTATCTATAT 59.248 44.000 0.00 0.00 0.00 0.86
597 627 5.042827 GTGGATTAGGGAGGGGGTATCTATA 60.043 48.000 0.00 0.00 0.00 1.31
598 628 3.943192 TGGATTAGGGAGGGGGTATCTAT 59.057 47.826 0.00 0.00 0.00 1.98
599 629 3.078612 GTGGATTAGGGAGGGGGTATCTA 59.921 52.174 0.00 0.00 0.00 1.98
601 631 2.157989 AGTGGATTAGGGAGGGGGTATC 60.158 54.545 0.00 0.00 0.00 2.24
602 632 1.880610 AGTGGATTAGGGAGGGGGTAT 59.119 52.381 0.00 0.00 0.00 2.73
603 633 1.336347 AGTGGATTAGGGAGGGGGTA 58.664 55.000 0.00 0.00 0.00 3.69
604 634 0.426022 AAGTGGATTAGGGAGGGGGT 59.574 55.000 0.00 0.00 0.00 4.95
605 635 0.846693 CAAGTGGATTAGGGAGGGGG 59.153 60.000 0.00 0.00 0.00 5.40
665 727 3.623510 GCCCACTAACTCTGCTGTTAATC 59.376 47.826 0.00 0.00 32.80 1.75
809 897 1.810030 GAGTAAAGAGCGGTGCGGG 60.810 63.158 0.00 0.00 0.00 6.13
810 898 0.669318 TTGAGTAAAGAGCGGTGCGG 60.669 55.000 0.00 0.00 0.00 5.69
811 899 0.438830 GTTGAGTAAAGAGCGGTGCG 59.561 55.000 0.00 0.00 0.00 5.34
812 900 1.461127 CAGTTGAGTAAAGAGCGGTGC 59.539 52.381 0.00 0.00 0.00 5.01
984 1081 2.086869 CCCATGTAGTGTTCCAAGCTG 58.913 52.381 0.00 0.00 0.00 4.24
993 1090 2.210144 AATGCCGCCCCATGTAGTGT 62.210 55.000 0.00 0.00 0.00 3.55
994 1091 1.453745 AATGCCGCCCCATGTAGTG 60.454 57.895 0.00 0.00 0.00 2.74
995 1092 1.453745 CAATGCCGCCCCATGTAGT 60.454 57.895 0.00 0.00 0.00 2.73
996 1093 2.195567 CCAATGCCGCCCCATGTAG 61.196 63.158 0.00 0.00 0.00 2.74
997 1094 2.123939 CCAATGCCGCCCCATGTA 60.124 61.111 0.00 0.00 0.00 2.29
1136 1239 3.550842 CGAGGTGAAAAAGAAAAGCTGGG 60.551 47.826 0.00 0.00 0.00 4.45
1139 1242 2.034685 GGCGAGGTGAAAAAGAAAAGCT 59.965 45.455 0.00 0.00 0.00 3.74
1140 1243 2.394708 GGCGAGGTGAAAAAGAAAAGC 58.605 47.619 0.00 0.00 0.00 3.51
1141 1244 2.623416 AGGGCGAGGTGAAAAAGAAAAG 59.377 45.455 0.00 0.00 0.00 2.27
1142 1245 2.360801 CAGGGCGAGGTGAAAAAGAAAA 59.639 45.455 0.00 0.00 0.00 2.29
1143 1246 1.953686 CAGGGCGAGGTGAAAAAGAAA 59.046 47.619 0.00 0.00 0.00 2.52
1146 1249 0.890996 AGCAGGGCGAGGTGAAAAAG 60.891 55.000 0.00 0.00 0.00 2.27
1152 1255 0.734889 CATTTAAGCAGGGCGAGGTG 59.265 55.000 0.00 0.00 0.00 4.00
1161 1264 3.442977 AGAAAGGAGCAGCATTTAAGCAG 59.557 43.478 0.00 0.00 36.85 4.24
1175 1278 1.457303 CGCGAGTTTGTCAGAAAGGAG 59.543 52.381 0.00 0.00 0.00 3.69
1178 1281 0.110644 GGCGCGAGTTTGTCAGAAAG 60.111 55.000 12.10 0.00 0.00 2.62
1235 1338 0.681243 AGGAAATGGAAAGGAGCGGC 60.681 55.000 0.00 0.00 0.00 6.53
1267 1370 1.734163 ATTTAGGACGGCGGTTTGAG 58.266 50.000 13.24 0.00 0.00 3.02
1304 1407 3.271729 GGAAAGAGAAAGAATCGGGACC 58.728 50.000 0.00 0.00 0.00 4.46
1309 1412 2.259618 TCGCGGAAAGAGAAAGAATCG 58.740 47.619 6.13 0.00 0.00 3.34
1318 1421 2.223044 GGCAGTAATTTCGCGGAAAGAG 60.223 50.000 2.72 0.00 34.92 2.85
1335 1438 1.402968 CAACAATCGGATCTTGGGCAG 59.597 52.381 0.00 0.00 0.00 4.85
1346 1449 1.595093 GGCTGGGGAACAACAATCGG 61.595 60.000 0.00 0.00 0.00 4.18
1366 1469 1.425412 CTCGTCGGTCGGAAAAATGT 58.575 50.000 0.00 0.00 40.32 2.71
1624 1765 2.099431 GGCAGTGAAGAGCAGAGCG 61.099 63.158 0.00 0.00 0.00 5.03
1634 1775 2.552155 GGTGTGGACTAATGGCAGTGAA 60.552 50.000 0.00 0.00 0.00 3.18
1643 1784 3.844211 ACAGGTATGTGGTGTGGACTAAT 59.156 43.478 0.00 0.00 38.57 1.73
1644 1785 3.244582 ACAGGTATGTGGTGTGGACTAA 58.755 45.455 0.00 0.00 38.57 2.24
1645 1786 2.829720 GACAGGTATGTGGTGTGGACTA 59.170 50.000 0.00 0.00 40.68 2.59
1646 1787 1.623811 GACAGGTATGTGGTGTGGACT 59.376 52.381 0.00 0.00 40.68 3.85
1647 1788 1.623811 AGACAGGTATGTGGTGTGGAC 59.376 52.381 0.00 0.00 40.68 4.02
1648 1789 1.899814 GAGACAGGTATGTGGTGTGGA 59.100 52.381 0.00 0.00 40.68 4.02
1649 1790 1.902508 AGAGACAGGTATGTGGTGTGG 59.097 52.381 0.00 0.00 40.68 4.17
1650 1791 3.119101 GGTAGAGACAGGTATGTGGTGTG 60.119 52.174 0.00 0.00 40.68 3.82
1651 1792 3.097614 GGTAGAGACAGGTATGTGGTGT 58.902 50.000 0.00 0.00 40.68 4.16
1652 1793 3.096852 TGGTAGAGACAGGTATGTGGTG 58.903 50.000 0.00 0.00 40.68 4.17
1658 1799 3.671740 TGAGCTGGTAGAGACAGGTAT 57.328 47.619 0.00 0.00 45.70 2.73
1667 1808 2.126071 GCGCGTTGAGCTGGTAGA 60.126 61.111 8.43 0.00 45.59 2.59
1686 1827 1.493446 ACCGAATCCCATTTACCTCCC 59.507 52.381 0.00 0.00 0.00 4.30
1687 1828 2.171870 TCACCGAATCCCATTTACCTCC 59.828 50.000 0.00 0.00 0.00 4.30
1689 1830 2.844348 AGTCACCGAATCCCATTTACCT 59.156 45.455 0.00 0.00 0.00 3.08
1690 1831 2.943033 CAGTCACCGAATCCCATTTACC 59.057 50.000 0.00 0.00 0.00 2.85
1691 1832 3.374058 CACAGTCACCGAATCCCATTTAC 59.626 47.826 0.00 0.00 0.00 2.01
1692 1833 3.262151 TCACAGTCACCGAATCCCATTTA 59.738 43.478 0.00 0.00 0.00 1.40
1693 1834 2.039746 TCACAGTCACCGAATCCCATTT 59.960 45.455 0.00 0.00 0.00 2.32
1694 1835 1.628340 TCACAGTCACCGAATCCCATT 59.372 47.619 0.00 0.00 0.00 3.16
1695 1836 1.275666 TCACAGTCACCGAATCCCAT 58.724 50.000 0.00 0.00 0.00 4.00
1700 1860 4.894784 AGTACAAATCACAGTCACCGAAT 58.105 39.130 0.00 0.00 0.00 3.34
1711 1871 9.436957 TGAAGAGGAGATTAAAGTACAAATCAC 57.563 33.333 14.35 9.80 35.07 3.06
1712 1872 9.658799 CTGAAGAGGAGATTAAAGTACAAATCA 57.341 33.333 14.35 0.00 35.07 2.57
1735 1895 1.338107 TCCGCTTTGTTCTCCTCTGA 58.662 50.000 0.00 0.00 0.00 3.27
1740 1900 0.727398 CCGAATCCGCTTTGTTCTCC 59.273 55.000 0.00 0.00 0.00 3.71
1761 1922 3.899980 AGCATCTATCCACATCACAGCTA 59.100 43.478 0.00 0.00 0.00 3.32
1860 2034 2.706723 TGTTGCCCAAACCTACTACTGA 59.293 45.455 0.00 0.00 38.06 3.41
1861 2035 3.074412 CTGTTGCCCAAACCTACTACTG 58.926 50.000 0.00 0.00 38.06 2.74
1862 2036 2.039879 CCTGTTGCCCAAACCTACTACT 59.960 50.000 0.00 0.00 38.06 2.57
1863 2037 2.433436 CCTGTTGCCCAAACCTACTAC 58.567 52.381 0.00 0.00 38.06 2.73
1864 2038 1.353022 CCCTGTTGCCCAAACCTACTA 59.647 52.381 0.00 0.00 38.06 1.82
1900 2075 6.767902 ACCGATCAGATTATGCAAGTACAAAT 59.232 34.615 0.00 0.00 0.00 2.32
1919 2094 1.949631 GGCGTGATTCCGACCGATC 60.950 63.158 0.00 0.00 0.00 3.69
1928 2103 1.482278 GTCTCATCTCGGCGTGATTC 58.518 55.000 20.54 8.94 0.00 2.52
1955 2130 5.232838 TCAAATTCATCATCTGATCGTCGTG 59.767 40.000 0.00 0.00 32.72 4.35
1964 2139 5.507482 GGCATGGAGTCAAATTCATCATCTG 60.507 44.000 0.00 0.00 0.00 2.90
1965 2140 4.583489 GGCATGGAGTCAAATTCATCATCT 59.417 41.667 0.00 0.00 0.00 2.90
2097 2272 3.305608 GCTGCTAAAGTGCCTCAAACAAT 60.306 43.478 0.00 0.00 0.00 2.71
2155 2330 4.521146 AGAGCAGGTTGTGATCCAAATAG 58.479 43.478 0.00 0.00 43.08 1.73
2225 2400 1.714899 CGGTTAGCGCCCAAATCCAG 61.715 60.000 2.29 0.00 0.00 3.86
2248 2423 3.320014 GGAGGTATAGGGCCGGCC 61.320 72.222 38.57 38.57 0.00 6.13
2251 2426 1.536943 GCTCAGGAGGTATAGGGCCG 61.537 65.000 0.00 0.00 0.00 6.13
2281 2456 0.790207 ACATTACGCTCACGCTGTTG 59.210 50.000 0.00 0.00 45.53 3.33
2319 2494 8.930760 CAGACTTAAGAACTCCAAATGTAGAAG 58.069 37.037 10.09 0.00 0.00 2.85
2320 2495 7.878127 CCAGACTTAAGAACTCCAAATGTAGAA 59.122 37.037 10.09 0.00 0.00 2.10
2322 2497 6.092807 GCCAGACTTAAGAACTCCAAATGTAG 59.907 42.308 10.09 0.00 0.00 2.74
2370 2545 3.120199 AGAGACGAATGAAAAACATGCCG 60.120 43.478 0.00 0.00 39.39 5.69
2371 2546 4.425577 AGAGACGAATGAAAAACATGCC 57.574 40.909 0.00 0.00 39.39 4.40
2372 2547 5.215160 ACAAGAGACGAATGAAAAACATGC 58.785 37.500 0.00 0.00 39.39 4.06
2373 2548 7.796838 TCTACAAGAGACGAATGAAAAACATG 58.203 34.615 0.00 0.00 39.39 3.21
2374 2549 7.962964 TCTACAAGAGACGAATGAAAAACAT 57.037 32.000 0.00 0.00 41.45 2.71
2375 2550 7.780008 TTCTACAAGAGACGAATGAAAAACA 57.220 32.000 0.00 0.00 32.31 2.83
2376 2551 8.336080 AGTTTCTACAAGAGACGAATGAAAAAC 58.664 33.333 0.00 0.00 34.82 2.43
2378 2553 8.335356 CAAGTTTCTACAAGAGACGAATGAAAA 58.665 33.333 0.00 0.00 34.82 2.29
2379 2554 7.518370 GCAAGTTTCTACAAGAGACGAATGAAA 60.518 37.037 0.00 0.00 34.82 2.69
2493 2668 0.681243 GCCACCTGGAATTGACCCTC 60.681 60.000 0.00 0.00 37.39 4.30
2506 2681 0.405585 AACCAGTAGCATTGCCACCT 59.594 50.000 4.70 0.00 0.00 4.00
2578 2754 6.490381 CCTACTATACTGAGCACCATACAGAA 59.510 42.308 0.00 0.00 35.85 3.02
2580 2756 5.770663 ACCTACTATACTGAGCACCATACAG 59.229 44.000 0.00 0.00 37.62 2.74
2582 2758 7.756395 TTACCTACTATACTGAGCACCATAC 57.244 40.000 0.00 0.00 0.00 2.39
2679 2855 9.764363 CTGAGCACCAGTATTGAGTTTATATTA 57.236 33.333 0.00 0.00 38.10 0.98
2725 2905 4.098914 AGTTCAGTTCAACCTATGCCAA 57.901 40.909 0.00 0.00 0.00 4.52
2728 2908 5.479306 TCTGTAGTTCAGTTCAACCTATGC 58.521 41.667 0.00 0.00 43.97 3.14
2734 2943 6.929606 ACCATTACTCTGTAGTTCAGTTCAAC 59.070 38.462 0.00 0.00 43.97 3.18
2735 2944 7.062749 ACCATTACTCTGTAGTTCAGTTCAA 57.937 36.000 0.00 0.00 43.97 2.69
2747 2956 8.998277 TCTATTCTAGCTAACCATTACTCTGT 57.002 34.615 0.00 0.00 0.00 3.41
2758 2967 6.038382 GCCCTTTTGGTTCTATTCTAGCTAAC 59.962 42.308 0.00 0.00 38.10 2.34
2772 2981 2.167662 CGGATACTTGCCCTTTTGGTT 58.832 47.619 0.00 0.00 38.10 3.67
2782 2991 7.653767 AGCAACTATTATAACGGATACTTGC 57.346 36.000 0.00 0.00 32.49 4.01
2794 3003 9.602568 TCGTGGACAAATTTAGCAACTATTATA 57.397 29.630 0.00 0.00 0.00 0.98
2795 3004 8.500753 TCGTGGACAAATTTAGCAACTATTAT 57.499 30.769 0.00 0.00 0.00 1.28
2801 3010 4.855531 AGTTCGTGGACAAATTTAGCAAC 58.144 39.130 0.00 0.00 0.00 4.17
2837 3050 6.417191 TTTACTGAACATTCTATCAACCGC 57.583 37.500 0.00 0.00 0.00 5.68
2839 3052 9.394477 GTGTTTTTACTGAACATTCTATCAACC 57.606 33.333 0.00 0.00 39.03 3.77
2847 3060 7.518731 TGCAAAGTGTTTTTACTGAACATTC 57.481 32.000 0.00 0.00 39.03 2.67
2848 3061 7.897575 TTGCAAAGTGTTTTTACTGAACATT 57.102 28.000 0.00 0.00 39.03 2.71
2856 3069 9.432077 CATATTGGTTTTGCAAAGTGTTTTTAC 57.568 29.630 12.41 4.96 0.00 2.01
2861 3074 6.257630 GTCACATATTGGTTTTGCAAAGTGTT 59.742 34.615 12.41 0.98 0.00 3.32
2868 3081 4.282957 ACATGGTCACATATTGGTTTTGCA 59.717 37.500 0.00 0.00 34.99 4.08
2869 3082 4.819769 ACATGGTCACATATTGGTTTTGC 58.180 39.130 0.00 0.00 34.99 3.68
2911 3132 8.817100 CGAAGCAAACATACAGTATTCAGATAA 58.183 33.333 0.00 0.00 0.00 1.75
2948 3169 0.462759 GGCATAGTCCACTGTGAGCC 60.463 60.000 9.86 8.65 37.28 4.70
3081 3305 9.342308 GTGAATGGATGGACTTCTAATTGATAA 57.658 33.333 0.00 0.00 0.00 1.75
3087 3311 5.118990 CACGTGAATGGATGGACTTCTAAT 58.881 41.667 10.90 0.00 0.00 1.73
3162 3386 0.647410 GATGAGCACGTTGTCGGATG 59.353 55.000 0.00 0.00 41.85 3.51
3301 3527 3.770666 CATGATGTTCCGTACTTCTCGT 58.229 45.455 0.00 0.00 33.32 4.18
3327 3553 9.811995 TTATAAGGGCGACATGTATATAATCAC 57.188 33.333 0.00 0.00 0.00 3.06
3343 3569 6.990349 TCCTACAGAGAAATTTTATAAGGGCG 59.010 38.462 0.00 0.00 0.00 6.13
3398 3725 5.163395 ACGTTTGCAGATAAAAGGGGAAAAA 60.163 36.000 0.00 0.00 0.00 1.94
3399 3726 4.342665 ACGTTTGCAGATAAAAGGGGAAAA 59.657 37.500 0.00 0.00 0.00 2.29
3400 3727 3.892588 ACGTTTGCAGATAAAAGGGGAAA 59.107 39.130 0.00 0.00 0.00 3.13
3401 3728 3.492337 ACGTTTGCAGATAAAAGGGGAA 58.508 40.909 0.00 0.00 0.00 3.97
3402 3729 3.149005 ACGTTTGCAGATAAAAGGGGA 57.851 42.857 0.00 0.00 0.00 4.81
3403 3730 5.576447 ATTACGTTTGCAGATAAAAGGGG 57.424 39.130 0.00 0.00 0.00 4.79
3404 3731 6.386654 ACAATTACGTTTGCAGATAAAAGGG 58.613 36.000 0.00 0.00 0.00 3.95
3405 3732 6.526674 GGACAATTACGTTTGCAGATAAAAGG 59.473 38.462 0.00 0.00 0.00 3.11
3406 3733 7.305474 AGGACAATTACGTTTGCAGATAAAAG 58.695 34.615 0.00 0.00 0.00 2.27
3407 3734 7.209471 AGGACAATTACGTTTGCAGATAAAA 57.791 32.000 0.00 0.00 0.00 1.52
3408 3735 6.811253 AGGACAATTACGTTTGCAGATAAA 57.189 33.333 0.00 0.00 0.00 1.40
3409 3736 6.811253 AAGGACAATTACGTTTGCAGATAA 57.189 33.333 0.00 0.00 0.00 1.75
3410 3737 6.811253 AAAGGACAATTACGTTTGCAGATA 57.189 33.333 0.00 0.00 0.00 1.98
3411 3738 5.705609 AAAGGACAATTACGTTTGCAGAT 57.294 34.783 0.00 0.00 0.00 2.90
3412 3739 6.621316 TTAAAGGACAATTACGTTTGCAGA 57.379 33.333 0.00 0.00 0.00 4.26
3413 3740 7.867445 ATTTAAAGGACAATTACGTTTGCAG 57.133 32.000 0.00 0.00 0.00 4.41
3414 3741 9.182933 GTAATTTAAAGGACAATTACGTTTGCA 57.817 29.630 0.00 0.00 36.57 4.08
3415 3742 9.182933 TGTAATTTAAAGGACAATTACGTTTGC 57.817 29.630 0.00 0.00 44.02 3.68
3426 3753 8.875803 CGCATAAGTAGTGTAATTTAAAGGACA 58.124 33.333 0.00 0.00 0.00 4.02
3427 3754 9.090692 TCGCATAAGTAGTGTAATTTAAAGGAC 57.909 33.333 0.00 0.00 0.00 3.85
3428 3755 9.090692 GTCGCATAAGTAGTGTAATTTAAAGGA 57.909 33.333 0.00 0.00 0.00 3.36
3429 3756 8.875803 TGTCGCATAAGTAGTGTAATTTAAAGG 58.124 33.333 0.00 0.00 0.00 3.11
3432 3759 8.822855 CCATGTCGCATAAGTAGTGTAATTTAA 58.177 33.333 0.00 0.00 0.00 1.52
3433 3760 7.042321 GCCATGTCGCATAAGTAGTGTAATTTA 60.042 37.037 0.00 0.00 0.00 1.40
3434 3761 6.238374 GCCATGTCGCATAAGTAGTGTAATTT 60.238 38.462 0.00 0.00 0.00 1.82
3435 3762 5.236478 GCCATGTCGCATAAGTAGTGTAATT 59.764 40.000 0.00 0.00 0.00 1.40
3436 3763 4.750098 GCCATGTCGCATAAGTAGTGTAAT 59.250 41.667 0.00 0.00 0.00 1.89
3437 3764 4.116961 GCCATGTCGCATAAGTAGTGTAA 58.883 43.478 0.00 0.00 0.00 2.41
3438 3765 3.131400 TGCCATGTCGCATAAGTAGTGTA 59.869 43.478 0.00 0.00 32.62 2.90
3439 3766 2.093711 TGCCATGTCGCATAAGTAGTGT 60.094 45.455 0.00 0.00 32.62 3.55
3440 3767 2.549926 TGCCATGTCGCATAAGTAGTG 58.450 47.619 0.00 0.00 32.62 2.74
3441 3768 2.979814 TGCCATGTCGCATAAGTAGT 57.020 45.000 0.00 0.00 32.62 2.73
3448 3775 9.078452 TGAAGAAATCAATATGCCATGTCGCAT 62.078 37.037 13.06 13.06 42.92 4.73
3449 3776 3.884693 AGAAATCAATATGCCATGTCGCA 59.115 39.130 0.00 0.00 44.35 5.10
3450 3777 4.494350 AGAAATCAATATGCCATGTCGC 57.506 40.909 0.00 0.00 0.00 5.19
3451 3778 6.063640 TGAAGAAATCAATATGCCATGTCG 57.936 37.500 0.00 0.00 34.30 4.35
3452 3779 6.921857 CCTTGAAGAAATCAATATGCCATGTC 59.078 38.462 0.00 0.00 46.62 3.06
3453 3780 6.183360 CCCTTGAAGAAATCAATATGCCATGT 60.183 38.462 0.00 0.00 46.62 3.21
3454 3781 6.183360 ACCCTTGAAGAAATCAATATGCCATG 60.183 38.462 0.00 0.00 46.62 3.66
3455 3782 5.901276 ACCCTTGAAGAAATCAATATGCCAT 59.099 36.000 0.00 0.00 46.62 4.40
3456 3783 5.271598 ACCCTTGAAGAAATCAATATGCCA 58.728 37.500 0.00 0.00 46.62 4.92
3457 3784 5.859205 ACCCTTGAAGAAATCAATATGCC 57.141 39.130 0.00 0.00 46.62 4.40
3458 3785 7.573968 ACTACCCTTGAAGAAATCAATATGC 57.426 36.000 0.00 0.00 46.62 3.14
3465 3792 9.232473 AGTATCAAAACTACCCTTGAAGAAATC 57.768 33.333 0.00 0.00 35.31 2.17
3667 4296 2.186160 CCAAGTCGGTTGCTGCACA 61.186 57.895 0.00 0.00 34.45 4.57
3769 4398 9.575783 GACGATATTCTTATAGAAGGCTTTAGG 57.424 37.037 0.00 0.00 37.69 2.69
3793 4422 6.655003 TCCAACTTTTTGATCTACTCCATGAC 59.345 38.462 0.00 0.00 34.24 3.06
3875 4504 4.637534 AGCAGCAACATATGTTAGACCAAG 59.362 41.667 20.39 7.96 36.32 3.61
3878 4507 6.260936 ACATTAGCAGCAACATATGTTAGACC 59.739 38.462 20.39 9.88 36.32 3.85
3890 4520 6.143438 GCATGAATGAATACATTAGCAGCAAC 59.857 38.462 0.00 0.00 45.30 4.17
3894 4524 8.867112 AAAAGCATGAATGAATACATTAGCAG 57.133 30.769 0.00 0.00 45.30 4.24
3929 4563 4.095410 TGGCAAACTTTTCAGCATATCG 57.905 40.909 0.00 0.00 0.00 2.92
4091 4725 1.134007 TCATGCTGGCTAGTCCAATGG 60.134 52.381 13.41 0.00 46.01 3.16
4151 4790 4.616181 AAAAAGGTGTTTCTGAGTCACG 57.384 40.909 0.00 0.00 33.51 4.35
4206 4848 6.073765 GCCAGATCAATAACCTACAATGTACG 60.074 42.308 0.00 0.00 0.00 3.67
4295 4940 4.355437 CGTACTCAAAGACTAGCATCCTG 58.645 47.826 0.00 0.00 0.00 3.86
4302 4947 6.237942 CCATTTGATGCGTACTCAAAGACTAG 60.238 42.308 12.57 0.00 43.63 2.57
4615 5267 7.121020 AGAGTACTAGTCTACAGGTAAAAGCAC 59.879 40.741 0.00 0.00 0.00 4.40
4639 5291 6.440647 TGAAAGGTAAGCTCCAAAGAGATAGA 59.559 38.462 0.00 0.00 43.39 1.98
4640 5292 6.644347 TGAAAGGTAAGCTCCAAAGAGATAG 58.356 40.000 0.00 0.00 43.39 2.08
4690 5344 2.948979 TCGACCAGCTGTTGTTCATTTT 59.051 40.909 13.81 0.00 0.00 1.82
4959 5615 3.181516 CGCCATCTTTGAGTAAGACTTGC 60.182 47.826 0.00 0.00 45.33 4.01
4960 5616 3.997021 ACGCCATCTTTGAGTAAGACTTG 59.003 43.478 0.00 0.00 45.33 3.16
4961 5617 4.273148 ACGCCATCTTTGAGTAAGACTT 57.727 40.909 0.00 0.00 45.33 3.01
4962 5618 3.963428 ACGCCATCTTTGAGTAAGACT 57.037 42.857 0.00 0.00 45.33 3.24
4978 5634 8.713271 TCCAACATTTCATTTTAATTTTACGCC 58.287 29.630 0.00 0.00 0.00 5.68
5046 5705 4.934602 AGACTGAGCAGTTATTTGAGCTTC 59.065 41.667 4.42 0.00 42.66 3.86
5050 5709 6.981762 ATTCAGACTGAGCAGTTATTTGAG 57.018 37.500 5.10 0.00 42.66 3.02
5148 5807 2.661537 CGCACGTTGGTCAGCTCA 60.662 61.111 0.00 0.00 0.00 4.26
5334 5993 1.344942 GAGGCGTGTGCTACAACGAG 61.345 60.000 0.00 0.00 42.25 4.18
5354 6021 2.997897 AGTGGGACGAGGTGAGGC 60.998 66.667 0.00 0.00 0.00 4.70
5355 6022 0.611062 TACAGTGGGACGAGGTGAGG 60.611 60.000 0.00 0.00 0.00 3.86
5356 6023 0.811915 CTACAGTGGGACGAGGTGAG 59.188 60.000 0.00 0.00 0.00 3.51
5357 6024 0.402887 TCTACAGTGGGACGAGGTGA 59.597 55.000 0.00 0.00 0.00 4.02
5358 6025 1.405821 GATCTACAGTGGGACGAGGTG 59.594 57.143 0.00 0.00 0.00 4.00
5378 6045 4.990543 TCAGTGTTAGCATTTGACGAAG 57.009 40.909 0.00 0.00 0.00 3.79
5387 6054 3.253188 ACGCAACAAATCAGTGTTAGCAT 59.747 39.130 10.70 0.00 39.73 3.79
5442 6109 0.108138 ACTGCTGGGCAAGTCGTATC 60.108 55.000 0.00 0.00 38.41 2.24
5445 6112 1.893808 CAACTGCTGGGCAAGTCGT 60.894 57.895 0.00 0.00 38.41 4.34
5447 6114 3.359002 CCAACTGCTGGGCAAGTC 58.641 61.111 0.00 0.00 42.17 3.01
5463 6264 0.751643 ACAGAATTACATGGCGGCCC 60.752 55.000 17.97 0.00 0.00 5.80
5537 6339 4.232221 CAAGGCACAACATCATTTCAGAC 58.768 43.478 0.00 0.00 0.00 3.51
5553 6355 0.033601 ACAACCCTTCACACAAGGCA 60.034 50.000 0.00 0.00 36.10 4.75
5554 6356 1.111277 AACAACCCTTCACACAAGGC 58.889 50.000 0.00 0.00 36.10 4.35
5583 6385 7.831690 AGCATCGATCTATCCTCAACTCTATTA 59.168 37.037 0.00 0.00 0.00 0.98
5584 6386 6.663093 AGCATCGATCTATCCTCAACTCTATT 59.337 38.462 0.00 0.00 0.00 1.73
5585 6387 6.186957 AGCATCGATCTATCCTCAACTCTAT 58.813 40.000 0.00 0.00 0.00 1.98
5586 6388 5.565509 AGCATCGATCTATCCTCAACTCTA 58.434 41.667 0.00 0.00 0.00 2.43
5627 6430 0.324614 ACCGTCAATGCAGACCATCA 59.675 50.000 0.00 0.00 35.07 3.07
5637 6440 3.255642 ACCATTCCAAAAGACCGTCAATG 59.744 43.478 0.40 1.22 0.00 2.82
5638 6441 3.255642 CACCATTCCAAAAGACCGTCAAT 59.744 43.478 0.40 0.00 0.00 2.57
5639 6442 2.621055 CACCATTCCAAAAGACCGTCAA 59.379 45.455 0.40 0.00 0.00 3.18
5640 6443 2.226330 CACCATTCCAAAAGACCGTCA 58.774 47.619 0.40 0.00 0.00 4.35
5641 6444 2.031157 CACACCATTCCAAAAGACCGTC 60.031 50.000 0.00 0.00 0.00 4.79
5642 6445 1.953686 CACACCATTCCAAAAGACCGT 59.046 47.619 0.00 0.00 0.00 4.83
5643 6446 1.269448 CCACACCATTCCAAAAGACCG 59.731 52.381 0.00 0.00 0.00 4.79
5644 6447 2.316108 ACCACACCATTCCAAAAGACC 58.684 47.619 0.00 0.00 0.00 3.85
5645 6448 3.550030 CGAACCACACCATTCCAAAAGAC 60.550 47.826 0.00 0.00 0.00 3.01
5646 6449 2.621055 CGAACCACACCATTCCAAAAGA 59.379 45.455 0.00 0.00 0.00 2.52
5647 6450 2.621055 TCGAACCACACCATTCCAAAAG 59.379 45.455 0.00 0.00 0.00 2.27
5648 6451 2.359531 GTCGAACCACACCATTCCAAAA 59.640 45.455 0.00 0.00 0.00 2.44
5649 6452 1.950909 GTCGAACCACACCATTCCAAA 59.049 47.619 0.00 0.00 0.00 3.28
5656 6459 1.227704 ATTGCGTCGAACCACACCA 60.228 52.632 0.00 0.00 0.00 4.17
5661 6464 2.031919 AGCCATTGCGTCGAACCA 59.968 55.556 0.00 0.00 44.33 3.67
5679 6482 1.377725 GGTCATCTGCAGGGTGGTG 60.378 63.158 15.13 5.82 0.00 4.17
5696 7748 1.298859 CCGGAGCGAAAACCTGAAGG 61.299 60.000 0.00 0.00 42.17 3.46
5724 7776 1.748122 GCTAGTCGACCCGGAGACA 60.748 63.158 20.97 10.19 39.67 3.41
5726 7778 0.543277 TAAGCTAGTCGACCCGGAGA 59.457 55.000 13.01 0.00 0.00 3.71
5729 7781 1.732308 GGTAAGCTAGTCGACCCGG 59.268 63.158 13.01 0.00 0.00 5.73
5793 7865 2.158928 ACATTTTGCAGCCAGCTTTCAA 60.159 40.909 0.19 0.00 45.94 2.69
5810 7882 6.887013 ACTGCTCATTCAGAATCTCTACATT 58.113 36.000 0.00 0.00 37.51 2.71
5817 7889 4.914983 TCCAAACTGCTCATTCAGAATCT 58.085 39.130 0.00 0.00 37.51 2.40
5866 7938 0.685785 TGGCAAGCCTGGTGAAACAA 60.686 50.000 12.96 0.00 36.05 2.83
5899 8708 7.594015 GGCATTTATCTGATAAGAATGCACTTG 59.406 37.037 29.67 13.67 39.21 3.16
5909 8718 7.933215 TGATGATGGGCATTTATCTGATAAG 57.067 36.000 9.81 2.02 37.34 1.73
5911 8720 7.555195 GTGATGATGATGGGCATTTATCTGATA 59.445 37.037 0.00 0.00 37.34 2.15
5924 8733 1.148949 TGCGGGTGATGATGATGGG 59.851 57.895 0.00 0.00 0.00 4.00
5929 8738 1.224069 GATCGGTGCGGGTGATGATG 61.224 60.000 0.00 0.00 0.00 3.07
5958 8773 0.874390 TTTTCACACGCAGAGATGGC 59.126 50.000 0.00 0.00 0.00 4.40
5963 8778 2.404265 TGCATTTTTCACACGCAGAG 57.596 45.000 0.00 0.00 0.00 3.35
5966 8781 2.789491 TGATGCATTTTTCACACGCA 57.211 40.000 0.00 0.00 36.95 5.24
5967 8782 2.346244 CCATGATGCATTTTTCACACGC 59.654 45.455 0.00 0.00 0.00 5.34
5969 8784 2.674357 GGCCATGATGCATTTTTCACAC 59.326 45.455 0.00 0.00 0.00 3.82
5970 8785 2.568062 AGGCCATGATGCATTTTTCACA 59.432 40.909 5.01 0.00 0.00 3.58
5971 8786 3.255969 AGGCCATGATGCATTTTTCAC 57.744 42.857 5.01 0.00 0.00 3.18
5972 8787 3.261137 TCAAGGCCATGATGCATTTTTCA 59.739 39.130 6.57 0.00 32.08 2.69
5979 8794 0.328926 TGACTCAAGGCCATGATGCA 59.671 50.000 11.80 9.75 0.00 3.96
6015 8830 4.543692 CATTTTGGAGTCAGTCTTGCTTG 58.456 43.478 0.00 0.00 0.00 4.01
6016 8831 3.571401 CCATTTTGGAGTCAGTCTTGCTT 59.429 43.478 0.00 0.00 40.96 3.91
6017 8832 3.152341 CCATTTTGGAGTCAGTCTTGCT 58.848 45.455 0.00 0.00 40.96 3.91
6018 8833 2.352127 GCCATTTTGGAGTCAGTCTTGC 60.352 50.000 0.00 0.00 40.96 4.01
6019 8834 3.057736 CAGCCATTTTGGAGTCAGTCTTG 60.058 47.826 0.00 0.00 40.96 3.02
6020 8835 3.152341 CAGCCATTTTGGAGTCAGTCTT 58.848 45.455 0.00 0.00 40.96 3.01
6021 8836 2.787994 CAGCCATTTTGGAGTCAGTCT 58.212 47.619 0.00 0.00 40.96 3.24
6022 8837 1.200948 GCAGCCATTTTGGAGTCAGTC 59.799 52.381 0.00 0.00 40.96 3.51
6034 8849 2.543635 AGAAAGAAATGGGCAGCCATT 58.456 42.857 15.19 8.47 41.51 3.16
6063 8907 1.274728 AGCACACTACTCTCTTGGCAG 59.725 52.381 0.00 0.00 0.00 4.85
6065 8909 2.072298 CAAGCACACTACTCTCTTGGC 58.928 52.381 0.00 0.00 32.73 4.52
6067 8911 5.277538 GGAAAACAAGCACACTACTCTCTTG 60.278 44.000 0.00 0.00 39.79 3.02
6068 8912 4.816925 GGAAAACAAGCACACTACTCTCTT 59.183 41.667 0.00 0.00 0.00 2.85
6069 8913 4.101741 AGGAAAACAAGCACACTACTCTCT 59.898 41.667 0.00 0.00 0.00 3.10
6070 8914 4.381411 AGGAAAACAAGCACACTACTCTC 58.619 43.478 0.00 0.00 0.00 3.20
6072 8916 4.261197 CCAAGGAAAACAAGCACACTACTC 60.261 45.833 0.00 0.00 0.00 2.59
6073 8917 3.632145 CCAAGGAAAACAAGCACACTACT 59.368 43.478 0.00 0.00 0.00 2.57
6074 8918 3.243401 CCCAAGGAAAACAAGCACACTAC 60.243 47.826 0.00 0.00 0.00 2.73
6075 8923 2.955660 CCCAAGGAAAACAAGCACACTA 59.044 45.455 0.00 0.00 0.00 2.74
6097 8945 3.333219 TTCTCCCCTGCCTGCCAG 61.333 66.667 0.00 0.00 41.41 4.85
6098 8946 3.650950 GTTCTCCCCTGCCTGCCA 61.651 66.667 0.00 0.00 0.00 4.92
6099 8947 4.432741 GGTTCTCCCCTGCCTGCC 62.433 72.222 0.00 0.00 0.00 4.85
6187 9045 2.884012 TGCCATCAACTTGTAACAGTGG 59.116 45.455 0.00 0.00 0.00 4.00
6189 9047 3.315191 GTGTGCCATCAACTTGTAACAGT 59.685 43.478 0.00 0.00 0.00 3.55
6239 9101 3.510846 CTGGCCTGATTCAGCTGC 58.489 61.111 9.47 7.20 0.00 5.25
6256 9118 2.353889 CTGTGATATGACTGGCAAGTGC 59.646 50.000 0.00 0.00 36.52 4.40
6257 9119 3.865446 TCTGTGATATGACTGGCAAGTG 58.135 45.455 0.00 0.00 36.52 3.16
6262 9127 4.526262 AGTAGGATCTGTGATATGACTGGC 59.474 45.833 0.00 0.00 0.00 4.85
6264 9129 8.402798 AGTAAGTAGGATCTGTGATATGACTG 57.597 38.462 0.00 0.00 0.00 3.51
6294 9159 3.476552 TGTGCCAGTGGTAGAAAGAAAG 58.523 45.455 11.74 0.00 0.00 2.62
6306 9173 2.159421 GCAATGATCTCTTGTGCCAGTG 60.159 50.000 9.40 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.