Multiple sequence alignment - TraesCS2B01G606900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G606900 chr2B 100.000 4059 0 0 1 4059 787821441 787817383 0.000000e+00 7496.0
1 TraesCS2B01G606900 chr2B 77.949 907 172 18 1007 1893 513481216 513480318 3.570000e-150 542.0
2 TraesCS2B01G606900 chr2B 81.280 625 115 2 2425 3048 513480078 513479455 4.680000e-139 505.0
3 TraesCS2B01G606900 chr2D 94.483 2284 90 9 942 3191 650656298 650654017 0.000000e+00 3487.0
4 TraesCS2B01G606900 chr2D 94.059 1195 47 8 2019 3191 650661380 650660188 0.000000e+00 1792.0
5 TraesCS2B01G606900 chr2D 95.227 880 25 3 3185 4059 650653982 650653115 0.000000e+00 1376.0
6 TraesCS2B01G606900 chr2D 91.042 547 43 2 129 675 650657150 650656610 0.000000e+00 734.0
7 TraesCS2B01G606900 chr2D 81.891 624 109 4 2427 3048 435071078 435070457 1.290000e-144 523.0
8 TraesCS2B01G606900 chr2A 94.139 1109 63 2 915 2021 772221250 772220142 0.000000e+00 1687.0
9 TraesCS2B01G606900 chr2A 95.395 912 40 2 2274 3185 772219580 772218671 0.000000e+00 1450.0
10 TraesCS2B01G606900 chr2A 90.068 876 74 7 3188 4053 772218622 772217750 0.000000e+00 1123.0
11 TraesCS2B01G606900 chr2A 87.645 688 83 1 1171 1856 772235436 772236123 0.000000e+00 798.0
12 TraesCS2B01G606900 chr2A 81.037 617 109 8 2427 3039 551722707 551723319 6.100000e-133 484.0
13 TraesCS2B01G606900 chr2A 89.177 231 15 3 2019 2239 772220039 772219809 3.090000e-71 279.0
14 TraesCS2B01G606900 chr2A 85.294 102 14 1 952 1053 772230801 772230901 2.000000e-18 104.0
15 TraesCS2B01G606900 chr5B 87.246 1082 94 13 945 2018 622553252 622554297 0.000000e+00 1194.0
16 TraesCS2B01G606900 chr5B 90.547 804 72 3 2385 3188 622555339 622556138 0.000000e+00 1061.0
17 TraesCS2B01G606900 chr5B 75.761 920 192 24 1007 1900 537964065 537963151 6.230000e-118 435.0
18 TraesCS2B01G606900 chr5B 86.029 136 18 1 3358 3492 622556263 622556398 1.180000e-30 145.0
19 TraesCS2B01G606900 chr5A 89.886 791 77 3 994 1783 626232683 626231895 0.000000e+00 1014.0
20 TraesCS2B01G606900 chr5A 90.196 765 69 4 2422 3186 626229010 626228252 0.000000e+00 992.0
21 TraesCS2B01G606900 chr5A 75.063 794 176 13 1086 1865 558311861 558311076 2.320000e-92 350.0
22 TraesCS2B01G606900 chr5A 85.455 220 9 8 1799 2018 626231796 626231600 1.480000e-49 207.0
23 TraesCS2B01G606900 chr5D 75.356 913 194 20 1007 1893 441927044 441926137 1.050000e-110 411.0
24 TraesCS2B01G606900 chr3D 77.989 527 108 7 2540 3061 73714197 73713674 1.410000e-84 324.0
25 TraesCS2B01G606900 chr3B 86.093 151 18 1 381 531 670699423 670699276 4.200000e-35 159.0
26 TraesCS2B01G606900 chr1D 81.633 147 22 2 384 530 462289732 462289591 2.560000e-22 117.0
27 TraesCS2B01G606900 chr1A 86.567 67 9 0 679 745 563187812 563187878 1.560000e-09 75.0
28 TraesCS2B01G606900 chr3A 96.774 31 1 0 2360 2390 624641902 624641932 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G606900 chr2B 787817383 787821441 4058 True 7496.000000 7496 100.000000 1 4059 1 chr2B.!!$R1 4058
1 TraesCS2B01G606900 chr2B 513479455 513481216 1761 True 523.500000 542 79.614500 1007 3048 2 chr2B.!!$R2 2041
2 TraesCS2B01G606900 chr2D 650653115 650661380 8265 True 1847.250000 3487 93.702750 129 4059 4 chr2D.!!$R2 3930
3 TraesCS2B01G606900 chr2D 435070457 435071078 621 True 523.000000 523 81.891000 2427 3048 1 chr2D.!!$R1 621
4 TraesCS2B01G606900 chr2A 772217750 772221250 3500 True 1134.750000 1687 92.194750 915 4053 4 chr2A.!!$R1 3138
5 TraesCS2B01G606900 chr2A 772235436 772236123 687 False 798.000000 798 87.645000 1171 1856 1 chr2A.!!$F3 685
6 TraesCS2B01G606900 chr2A 551722707 551723319 612 False 484.000000 484 81.037000 2427 3039 1 chr2A.!!$F1 612
7 TraesCS2B01G606900 chr5B 622553252 622556398 3146 False 800.000000 1194 87.940667 945 3492 3 chr5B.!!$F1 2547
8 TraesCS2B01G606900 chr5B 537963151 537964065 914 True 435.000000 435 75.761000 1007 1900 1 chr5B.!!$R1 893
9 TraesCS2B01G606900 chr5A 626228252 626232683 4431 True 737.666667 1014 88.512333 994 3186 3 chr5A.!!$R2 2192
10 TraesCS2B01G606900 chr5A 558311076 558311861 785 True 350.000000 350 75.063000 1086 1865 1 chr5A.!!$R1 779
11 TraesCS2B01G606900 chr5D 441926137 441927044 907 True 411.000000 411 75.356000 1007 1893 1 chr5D.!!$R1 886
12 TraesCS2B01G606900 chr3D 73713674 73714197 523 True 324.000000 324 77.989000 2540 3061 1 chr3D.!!$R1 521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
170 4273 0.106419 TTTCCCCACCAACCAGTGAC 60.106 55.000 0.0 0.0 40.34 3.67 F
1487 5914 0.464870 CTCCTCTGCTCCATGACAGG 59.535 60.000 0.0 0.0 34.57 4.00 F
1789 6242 1.218316 GCTAGTAACGGCAGCACCT 59.782 57.895 0.0 0.0 35.35 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1789 6242 0.185175 TCTAGCAGCCCCTCATCGTA 59.815 55.0 0.0 0.0 0.00 3.43 R
2371 8023 2.693267 AATGCTACTCCCTCCGTTTC 57.307 50.0 0.0 0.0 0.00 2.78 R
3635 10732 2.024176 AGTGATTGAAATCGTCCGGG 57.976 50.0 0.0 0.0 38.26 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.948847 TGCGAGCTTATCATACAATCAGT 58.051 39.130 0.00 0.00 0.00 3.41
23 24 4.746611 TGCGAGCTTATCATACAATCAGTG 59.253 41.667 0.00 0.00 0.00 3.66
24 25 4.747108 GCGAGCTTATCATACAATCAGTGT 59.253 41.667 0.00 0.00 44.82 3.55
27 28 6.699204 CGAGCTTATCATACAATCAGTGTTCT 59.301 38.462 0.00 0.00 41.98 3.01
28 29 7.223582 CGAGCTTATCATACAATCAGTGTTCTT 59.776 37.037 0.00 0.00 41.98 2.52
29 30 8.430801 AGCTTATCATACAATCAGTGTTCTTC 57.569 34.615 0.00 0.00 41.98 2.87
30 31 7.223582 AGCTTATCATACAATCAGTGTTCTTCG 59.776 37.037 0.00 0.00 41.98 3.79
31 32 7.010552 GCTTATCATACAATCAGTGTTCTTCGT 59.989 37.037 0.00 0.00 41.98 3.85
32 33 8.771920 TTATCATACAATCAGTGTTCTTCGTT 57.228 30.769 0.00 0.00 41.98 3.85
33 34 9.863845 TTATCATACAATCAGTGTTCTTCGTTA 57.136 29.630 0.00 0.00 41.98 3.18
34 35 8.948631 ATCATACAATCAGTGTTCTTCGTTAT 57.051 30.769 0.00 0.00 41.98 1.89
36 37 9.516314 TCATACAATCAGTGTTCTTCGTTATAG 57.484 33.333 0.00 0.00 41.98 1.31
37 38 9.516314 CATACAATCAGTGTTCTTCGTTATAGA 57.484 33.333 0.00 0.00 41.98 1.98
44 45 8.129840 TCAGTGTTCTTCGTTATAGATTAGAGC 58.870 37.037 0.00 0.00 0.00 4.09
45 46 7.915923 CAGTGTTCTTCGTTATAGATTAGAGCA 59.084 37.037 0.00 0.00 0.00 4.26
46 47 8.132362 AGTGTTCTTCGTTATAGATTAGAGCAG 58.868 37.037 0.00 0.00 0.00 4.24
47 48 8.129840 GTGTTCTTCGTTATAGATTAGAGCAGA 58.870 37.037 0.00 0.00 0.00 4.26
49 50 8.347035 GTTCTTCGTTATAGATTAGAGCAGAGT 58.653 37.037 0.00 0.00 0.00 3.24
51 52 8.346300 TCTTCGTTATAGATTAGAGCAGAGTTG 58.654 37.037 0.00 0.00 0.00 3.16
53 54 6.546403 TCGTTATAGATTAGAGCAGAGTTGGT 59.454 38.462 0.00 0.00 37.84 3.67
54 55 6.638873 CGTTATAGATTAGAGCAGAGTTGGTG 59.361 42.308 0.00 0.00 34.61 4.17
55 56 3.902881 AGATTAGAGCAGAGTTGGTGG 57.097 47.619 0.00 0.00 34.61 4.61
59 60 2.262423 AGAGCAGAGTTGGTGGTTTC 57.738 50.000 0.00 0.00 34.61 2.78
61 62 2.173569 AGAGCAGAGTTGGTGGTTTCTT 59.826 45.455 0.00 0.00 34.61 2.52
62 63 3.391296 AGAGCAGAGTTGGTGGTTTCTTA 59.609 43.478 0.00 0.00 34.61 2.10
63 64 4.042187 AGAGCAGAGTTGGTGGTTTCTTAT 59.958 41.667 0.00 0.00 34.61 1.73
64 65 4.074970 AGCAGAGTTGGTGGTTTCTTATG 58.925 43.478 0.00 0.00 32.86 1.90
65 66 3.366374 GCAGAGTTGGTGGTTTCTTATGC 60.366 47.826 0.00 0.00 0.00 3.14
66 67 3.191371 CAGAGTTGGTGGTTTCTTATGCC 59.809 47.826 0.00 0.00 0.00 4.40
67 68 2.492088 GAGTTGGTGGTTTCTTATGCCC 59.508 50.000 0.00 0.00 0.00 5.36
69 70 2.214376 TGGTGGTTTCTTATGCCCTG 57.786 50.000 0.00 0.00 0.00 4.45
72 73 3.525609 TGGTGGTTTCTTATGCCCTGATA 59.474 43.478 0.00 0.00 0.00 2.15
73 74 3.883489 GGTGGTTTCTTATGCCCTGATAC 59.117 47.826 0.00 0.00 0.00 2.24
74 75 4.523083 GTGGTTTCTTATGCCCTGATACA 58.477 43.478 0.00 0.00 0.00 2.29
75 76 4.947388 GTGGTTTCTTATGCCCTGATACAA 59.053 41.667 0.00 0.00 0.00 2.41
76 77 5.417580 GTGGTTTCTTATGCCCTGATACAAA 59.582 40.000 0.00 0.00 0.00 2.83
78 79 6.096705 TGGTTTCTTATGCCCTGATACAAATG 59.903 38.462 0.00 0.00 0.00 2.32
79 80 6.096846 GGTTTCTTATGCCCTGATACAAATGT 59.903 38.462 0.00 0.00 0.00 2.71
87 88 6.363882 TGCCCTGATACAAATGTGATATCAA 58.636 36.000 7.07 0.00 35.46 2.57
88 89 6.487668 TGCCCTGATACAAATGTGATATCAAG 59.512 38.462 7.07 0.00 35.46 3.02
89 90 6.488006 GCCCTGATACAAATGTGATATCAAGT 59.512 38.462 7.07 4.40 35.46 3.16
90 91 7.013655 GCCCTGATACAAATGTGATATCAAGTT 59.986 37.037 7.07 2.53 35.46 2.66
91 92 8.347771 CCCTGATACAAATGTGATATCAAGTTG 58.652 37.037 7.07 14.59 35.46 3.16
92 93 8.896744 CCTGATACAAATGTGATATCAAGTTGT 58.103 33.333 23.76 23.76 35.46 3.32
95 96 8.915871 ATACAAATGTGATATCAAGTTGTTGC 57.084 30.769 24.64 8.23 34.18 4.17
97 98 7.086376 ACAAATGTGATATCAAGTTGTTGCTC 58.914 34.615 19.01 3.09 33.23 4.26
100 101 7.783090 ATGTGATATCAAGTTGTTGCTCTAG 57.217 36.000 7.07 0.00 33.23 2.43
101 102 6.701340 TGTGATATCAAGTTGTTGCTCTAGT 58.299 36.000 7.07 0.00 33.23 2.57
102 103 6.813649 TGTGATATCAAGTTGTTGCTCTAGTC 59.186 38.462 7.07 0.00 33.23 2.59
103 104 7.038659 GTGATATCAAGTTGTTGCTCTAGTCT 58.961 38.462 7.07 0.00 33.23 3.24
104 105 7.547370 GTGATATCAAGTTGTTGCTCTAGTCTT 59.453 37.037 7.07 0.00 33.23 3.01
105 106 8.749354 TGATATCAAGTTGTTGCTCTAGTCTTA 58.251 33.333 1.98 0.00 33.23 2.10
107 108 9.944376 ATATCAAGTTGTTGCTCTAGTCTTAAA 57.056 29.630 2.11 0.00 33.23 1.52
108 109 8.854614 ATCAAGTTGTTGCTCTAGTCTTAAAT 57.145 30.769 2.11 0.00 33.23 1.40
109 110 8.087982 TCAAGTTGTTGCTCTAGTCTTAAATG 57.912 34.615 2.11 0.00 33.23 2.32
111 112 7.426929 AGTTGTTGCTCTAGTCTTAAATGTG 57.573 36.000 0.00 0.00 0.00 3.21
112 113 6.428159 AGTTGTTGCTCTAGTCTTAAATGTGG 59.572 38.462 0.00 0.00 0.00 4.17
113 114 5.865085 TGTTGCTCTAGTCTTAAATGTGGT 58.135 37.500 0.00 0.00 0.00 4.16
114 115 5.700832 TGTTGCTCTAGTCTTAAATGTGGTG 59.299 40.000 0.00 0.00 0.00 4.17
117 118 5.221843 TGCTCTAGTCTTAAATGTGGTGGTT 60.222 40.000 0.00 0.00 0.00 3.67
119 120 6.206829 GCTCTAGTCTTAAATGTGGTGGTTTT 59.793 38.462 0.00 0.00 0.00 2.43
122 123 3.733727 GTCTTAAATGTGGTGGTTTTGCG 59.266 43.478 0.00 0.00 0.00 4.85
123 124 3.381908 TCTTAAATGTGGTGGTTTTGCGT 59.618 39.130 0.00 0.00 0.00 5.24
125 126 3.802948 AAATGTGGTGGTTTTGCGTAA 57.197 38.095 0.00 0.00 0.00 3.18
127 128 4.329462 AATGTGGTGGTTTTGCGTAAAT 57.671 36.364 0.00 0.00 0.00 1.40
128 129 5.455056 AATGTGGTGGTTTTGCGTAAATA 57.545 34.783 0.00 0.00 0.00 1.40
129 130 4.913335 TGTGGTGGTTTTGCGTAAATAA 57.087 36.364 0.00 0.00 0.00 1.40
130 131 4.861210 TGTGGTGGTTTTGCGTAAATAAG 58.139 39.130 0.00 0.00 0.00 1.73
131 132 4.579340 TGTGGTGGTTTTGCGTAAATAAGA 59.421 37.500 0.00 0.00 0.00 2.10
132 133 5.151389 GTGGTGGTTTTGCGTAAATAAGAG 58.849 41.667 0.00 0.00 0.00 2.85
133 134 4.822896 TGGTGGTTTTGCGTAAATAAGAGT 59.177 37.500 0.00 0.00 0.00 3.24
134 135 5.151389 GGTGGTTTTGCGTAAATAAGAGTG 58.849 41.667 0.00 0.00 0.00 3.51
137 4240 5.049267 TGGTTTTGCGTAAATAAGAGTGGTC 60.049 40.000 0.00 0.00 0.00 4.02
140 4243 6.476243 TTTGCGTAAATAAGAGTGGTCTTC 57.524 37.500 0.00 0.00 42.40 2.87
142 4245 5.408356 TGCGTAAATAAGAGTGGTCTTCTC 58.592 41.667 0.00 0.00 42.40 2.87
151 4254 5.559148 AGAGTGGTCTTCTCTTGATGTTT 57.441 39.130 0.00 0.00 38.91 2.83
154 4257 6.484977 AGAGTGGTCTTCTCTTGATGTTTTTC 59.515 38.462 0.00 0.00 38.91 2.29
163 4266 3.386402 TCTTGATGTTTTTCCCCACCAAC 59.614 43.478 0.00 0.00 0.00 3.77
169 4272 0.631753 TTTTCCCCACCAACCAGTGA 59.368 50.000 0.00 0.00 40.34 3.41
170 4273 0.106419 TTTCCCCACCAACCAGTGAC 60.106 55.000 0.00 0.00 40.34 3.67
171 4274 2.281484 CCCCACCAACCAGTGACG 60.281 66.667 0.00 0.00 40.34 4.35
172 4275 2.813726 CCCCACCAACCAGTGACGA 61.814 63.158 0.00 0.00 40.34 4.20
173 4276 1.597027 CCCACCAACCAGTGACGAC 60.597 63.158 0.00 0.00 40.34 4.34
174 4277 1.597027 CCACCAACCAGTGACGACC 60.597 63.158 0.00 0.00 40.34 4.79
175 4278 1.145156 CACCAACCAGTGACGACCA 59.855 57.895 0.00 0.00 40.34 4.02
196 4299 5.149273 CCATGATCATGCTAATTAACGTGC 58.851 41.667 27.24 0.00 37.49 5.34
229 4332 0.824109 TGTCCATCCACTCGCCTAAG 59.176 55.000 0.00 0.00 0.00 2.18
241 4344 1.710339 GCCTAAGAGCGACAAAGCG 59.290 57.895 0.00 0.00 43.00 4.68
244 4347 0.716108 CTAAGAGCGACAAAGCGGTG 59.284 55.000 0.00 0.00 42.62 4.94
315 4418 8.740369 GTGCTAATTAACATATATACTACGCGG 58.260 37.037 12.47 0.00 0.00 6.46
347 4450 2.158900 CCATGTCCATCCACTCACCTAC 60.159 54.545 0.00 0.00 0.00 3.18
365 4468 2.128771 ACCGGCTTTCATTAGTGCAT 57.871 45.000 0.00 0.00 0.00 3.96
377 4480 4.573607 TCATTAGTGCATGCTGACTCAATC 59.426 41.667 20.33 0.00 0.00 2.67
380 4483 1.733912 GTGCATGCTGACTCAATCGAA 59.266 47.619 20.33 0.00 0.00 3.71
409 4512 7.041721 TGCTATACAGACGACAAAATTCAGAT 58.958 34.615 0.00 0.00 0.00 2.90
414 4517 5.178252 ACAGACGACAAAATTCAGATGACTG 59.822 40.000 0.00 0.00 44.66 3.51
519 4622 1.282817 TGTCCACGTTTTGTCGTCTG 58.717 50.000 0.00 0.00 42.27 3.51
545 4648 5.358298 AGCAGTTTTTCGGACTCAATAAC 57.642 39.130 0.00 0.00 0.00 1.89
546 4649 4.819630 AGCAGTTTTTCGGACTCAATAACA 59.180 37.500 0.00 0.00 0.00 2.41
580 4683 8.891985 TTGCATGGATTTAATATAATGGGCTA 57.108 30.769 0.00 0.00 0.00 3.93
591 4694 0.753262 AATGGGCTACGGTCTAGCAG 59.247 55.000 5.36 0.00 42.06 4.24
595 4698 1.009449 GCTACGGTCTAGCAGCTCG 60.009 63.158 0.00 0.00 40.14 5.03
616 4719 0.802607 GAACCAAGCCGAGCTCTACG 60.803 60.000 12.85 0.00 38.25 3.51
626 4729 1.305381 AGCTCTACGGCACCTTCCT 60.305 57.895 0.00 0.00 34.17 3.36
635 4738 1.274703 GGCACCTTCCTCCTCCATCA 61.275 60.000 0.00 0.00 0.00 3.07
658 4761 1.138266 GTCCTCCGCTATGCAACCTAA 59.862 52.381 0.00 0.00 0.00 2.69
669 4772 1.308783 GCAACCTAACCCAGCAGCTC 61.309 60.000 0.00 0.00 0.00 4.09
675 4778 1.936547 CTAACCCAGCAGCTCGATTTC 59.063 52.381 0.00 0.00 0.00 2.17
676 4779 0.678048 AACCCAGCAGCTCGATTTCC 60.678 55.000 0.00 0.00 0.00 3.13
677 4780 1.222936 CCCAGCAGCTCGATTTCCT 59.777 57.895 0.00 0.00 0.00 3.36
678 4781 0.465705 CCCAGCAGCTCGATTTCCTA 59.534 55.000 0.00 0.00 0.00 2.94
679 4782 1.071385 CCCAGCAGCTCGATTTCCTAT 59.929 52.381 0.00 0.00 0.00 2.57
680 4783 2.486191 CCCAGCAGCTCGATTTCCTATT 60.486 50.000 0.00 0.00 0.00 1.73
681 4784 2.805099 CCAGCAGCTCGATTTCCTATTC 59.195 50.000 0.00 0.00 0.00 1.75
682 4785 3.461061 CAGCAGCTCGATTTCCTATTCA 58.539 45.455 0.00 0.00 0.00 2.57
683 4786 3.493877 CAGCAGCTCGATTTCCTATTCAG 59.506 47.826 0.00 0.00 0.00 3.02
684 4787 3.133721 AGCAGCTCGATTTCCTATTCAGT 59.866 43.478 0.00 0.00 0.00 3.41
685 4788 3.873952 GCAGCTCGATTTCCTATTCAGTT 59.126 43.478 0.00 0.00 0.00 3.16
686 4789 4.333926 GCAGCTCGATTTCCTATTCAGTTT 59.666 41.667 0.00 0.00 0.00 2.66
687 4790 5.163713 GCAGCTCGATTTCCTATTCAGTTTT 60.164 40.000 0.00 0.00 0.00 2.43
688 4791 6.253746 CAGCTCGATTTCCTATTCAGTTTTG 58.746 40.000 0.00 0.00 0.00 2.44
689 4792 5.940470 AGCTCGATTTCCTATTCAGTTTTGT 59.060 36.000 0.00 0.00 0.00 2.83
690 4793 6.431234 AGCTCGATTTCCTATTCAGTTTTGTT 59.569 34.615 0.00 0.00 0.00 2.83
691 4794 7.606456 AGCTCGATTTCCTATTCAGTTTTGTTA 59.394 33.333 0.00 0.00 0.00 2.41
692 4795 8.234546 GCTCGATTTCCTATTCAGTTTTGTTAA 58.765 33.333 0.00 0.00 0.00 2.01
695 4798 9.893305 CGATTTCCTATTCAGTTTTGTTAAAGT 57.107 29.630 0.00 0.00 0.00 2.66
723 4826 9.144747 CATCTAGATGTGCCATAACTATTGTAC 57.855 37.037 22.42 0.00 34.23 2.90
724 4827 8.245195 TCTAGATGTGCCATAACTATTGTACA 57.755 34.615 0.00 0.00 30.93 2.90
725 4828 8.870116 TCTAGATGTGCCATAACTATTGTACAT 58.130 33.333 0.00 4.80 37.36 2.29
726 4829 7.969536 AGATGTGCCATAACTATTGTACATC 57.030 36.000 17.16 17.16 44.31 3.06
727 4830 7.739825 AGATGTGCCATAACTATTGTACATCT 58.260 34.615 19.76 19.76 46.59 2.90
729 4832 9.489084 GATGTGCCATAACTATTGTACATCTAA 57.511 33.333 17.40 0.00 42.57 2.10
730 4833 8.887036 TGTGCCATAACTATTGTACATCTAAG 57.113 34.615 0.00 0.00 0.00 2.18
731 4834 8.482943 TGTGCCATAACTATTGTACATCTAAGT 58.517 33.333 0.00 0.00 0.00 2.24
732 4835 8.979574 GTGCCATAACTATTGTACATCTAAGTC 58.020 37.037 0.00 0.00 0.00 3.01
733 4836 8.148351 TGCCATAACTATTGTACATCTAAGTCC 58.852 37.037 0.00 0.00 0.00 3.85
734 4837 8.148351 GCCATAACTATTGTACATCTAAGTCCA 58.852 37.037 0.00 0.00 0.00 4.02
735 4838 9.698309 CCATAACTATTGTACATCTAAGTCCAG 57.302 37.037 0.00 0.00 0.00 3.86
738 4841 7.719871 ACTATTGTACATCTAAGTCCAGTGT 57.280 36.000 0.00 0.00 0.00 3.55
739 4842 7.773149 ACTATTGTACATCTAAGTCCAGTGTC 58.227 38.462 0.00 0.00 0.00 3.67
740 4843 6.605471 ATTGTACATCTAAGTCCAGTGTCA 57.395 37.500 0.00 0.00 0.00 3.58
741 4844 6.605471 TTGTACATCTAAGTCCAGTGTCAT 57.395 37.500 0.00 0.00 0.00 3.06
742 4845 6.605471 TGTACATCTAAGTCCAGTGTCATT 57.395 37.500 0.00 0.00 0.00 2.57
743 4846 6.398095 TGTACATCTAAGTCCAGTGTCATTG 58.602 40.000 0.00 0.00 0.00 2.82
744 4847 5.745312 ACATCTAAGTCCAGTGTCATTGA 57.255 39.130 0.00 0.00 0.00 2.57
745 4848 5.728471 ACATCTAAGTCCAGTGTCATTGAG 58.272 41.667 0.00 0.00 0.00 3.02
746 4849 5.247110 ACATCTAAGTCCAGTGTCATTGAGT 59.753 40.000 0.00 0.00 0.00 3.41
747 4850 5.139435 TCTAAGTCCAGTGTCATTGAGTG 57.861 43.478 0.00 0.00 0.00 3.51
748 4851 3.845781 AAGTCCAGTGTCATTGAGTGT 57.154 42.857 0.00 0.00 0.00 3.55
749 4852 4.955811 AAGTCCAGTGTCATTGAGTGTA 57.044 40.909 0.00 0.00 0.00 2.90
750 4853 4.527509 AGTCCAGTGTCATTGAGTGTAG 57.472 45.455 0.00 0.00 0.00 2.74
751 4854 4.152647 AGTCCAGTGTCATTGAGTGTAGA 58.847 43.478 0.00 0.00 0.00 2.59
752 4855 4.774726 AGTCCAGTGTCATTGAGTGTAGAT 59.225 41.667 0.00 0.00 0.00 1.98
753 4856 4.867047 GTCCAGTGTCATTGAGTGTAGATG 59.133 45.833 0.00 0.00 0.00 2.90
754 4857 4.772100 TCCAGTGTCATTGAGTGTAGATGA 59.228 41.667 0.00 0.00 0.00 2.92
755 4858 5.245977 TCCAGTGTCATTGAGTGTAGATGAA 59.754 40.000 0.00 0.00 32.14 2.57
756 4859 6.070596 TCCAGTGTCATTGAGTGTAGATGAAT 60.071 38.462 0.00 0.00 32.14 2.57
757 4860 7.124147 TCCAGTGTCATTGAGTGTAGATGAATA 59.876 37.037 0.00 0.00 32.14 1.75
758 4861 7.437565 CCAGTGTCATTGAGTGTAGATGAATAG 59.562 40.741 0.00 0.00 32.14 1.73
759 4862 8.193438 CAGTGTCATTGAGTGTAGATGAATAGA 58.807 37.037 0.00 0.00 32.14 1.98
760 4863 8.922237 AGTGTCATTGAGTGTAGATGAATAGAT 58.078 33.333 0.00 0.00 32.14 1.98
761 4864 9.190858 GTGTCATTGAGTGTAGATGAATAGATC 57.809 37.037 0.00 0.00 32.14 2.75
762 4865 8.078596 TGTCATTGAGTGTAGATGAATAGATCG 58.921 37.037 0.00 0.00 32.14 3.69
763 4866 8.293157 GTCATTGAGTGTAGATGAATAGATCGA 58.707 37.037 0.00 0.00 32.14 3.59
764 4867 8.293157 TCATTGAGTGTAGATGAATAGATCGAC 58.707 37.037 0.00 0.00 0.00 4.20
765 4868 7.568199 TTGAGTGTAGATGAATAGATCGACA 57.432 36.000 0.00 0.00 36.12 4.35
766 4869 7.195839 TGAGTGTAGATGAATAGATCGACAG 57.804 40.000 0.00 0.00 38.26 3.51
767 4870 6.768381 TGAGTGTAGATGAATAGATCGACAGT 59.232 38.462 0.00 0.00 41.57 3.55
768 4871 7.283354 TGAGTGTAGATGAATAGATCGACAGTT 59.717 37.037 0.00 0.00 40.00 3.16
769 4872 8.001881 AGTGTAGATGAATAGATCGACAGTTT 57.998 34.615 0.00 0.00 38.00 2.66
770 4873 8.470805 AGTGTAGATGAATAGATCGACAGTTTT 58.529 33.333 0.00 0.00 38.00 2.43
771 4874 9.088512 GTGTAGATGAATAGATCGACAGTTTTT 57.911 33.333 0.00 0.00 38.26 1.94
772 4875 9.302345 TGTAGATGAATAGATCGACAGTTTTTC 57.698 33.333 0.00 0.00 34.29 2.29
773 4876 7.456684 AGATGAATAGATCGACAGTTTTTCG 57.543 36.000 0.00 0.00 37.85 3.46
774 4877 5.450376 TGAATAGATCGACAGTTTTTCGC 57.550 39.130 0.00 0.00 36.40 4.70
775 4878 4.926832 TGAATAGATCGACAGTTTTTCGCA 59.073 37.500 0.00 0.00 36.40 5.10
776 4879 5.407084 TGAATAGATCGACAGTTTTTCGCAA 59.593 36.000 0.00 0.00 36.40 4.85
777 4880 5.856126 ATAGATCGACAGTTTTTCGCAAA 57.144 34.783 0.00 0.00 36.40 3.68
778 4881 4.545823 AGATCGACAGTTTTTCGCAAAA 57.454 36.364 0.00 0.00 36.40 2.44
779 4882 4.915704 AGATCGACAGTTTTTCGCAAAAA 58.084 34.783 0.00 0.00 37.99 1.94
801 4904 4.525912 AAAAAGTCCAGTGCCATTGATC 57.474 40.909 0.00 0.00 0.00 2.92
802 4905 3.446442 AAAGTCCAGTGCCATTGATCT 57.554 42.857 0.00 0.00 0.00 2.75
803 4906 3.446442 AAGTCCAGTGCCATTGATCTT 57.554 42.857 0.00 0.00 0.00 2.40
804 4907 4.574674 AAGTCCAGTGCCATTGATCTTA 57.425 40.909 0.00 0.00 0.00 2.10
805 4908 3.878778 AGTCCAGTGCCATTGATCTTAC 58.121 45.455 0.00 0.00 0.00 2.34
806 4909 2.945668 GTCCAGTGCCATTGATCTTACC 59.054 50.000 0.00 0.00 0.00 2.85
807 4910 1.942657 CCAGTGCCATTGATCTTACCG 59.057 52.381 0.00 0.00 0.00 4.02
808 4911 1.942657 CAGTGCCATTGATCTTACCGG 59.057 52.381 0.00 0.00 0.00 5.28
809 4912 1.134098 AGTGCCATTGATCTTACCGGG 60.134 52.381 6.32 0.00 0.00 5.73
810 4913 1.134220 GTGCCATTGATCTTACCGGGA 60.134 52.381 6.32 0.00 0.00 5.14
811 4914 1.140852 TGCCATTGATCTTACCGGGAG 59.859 52.381 6.32 3.13 0.00 4.30
823 4926 3.622826 CGGGAGGTTCGTGTGGGT 61.623 66.667 0.00 0.00 0.00 4.51
824 4927 2.277591 CGGGAGGTTCGTGTGGGTA 61.278 63.158 0.00 0.00 0.00 3.69
825 4928 1.610554 CGGGAGGTTCGTGTGGGTAT 61.611 60.000 0.00 0.00 0.00 2.73
826 4929 0.616891 GGGAGGTTCGTGTGGGTATT 59.383 55.000 0.00 0.00 0.00 1.89
827 4930 1.003928 GGGAGGTTCGTGTGGGTATTT 59.996 52.381 0.00 0.00 0.00 1.40
828 4931 2.553685 GGGAGGTTCGTGTGGGTATTTT 60.554 50.000 0.00 0.00 0.00 1.82
829 4932 2.745821 GGAGGTTCGTGTGGGTATTTTC 59.254 50.000 0.00 0.00 0.00 2.29
830 4933 3.558533 GGAGGTTCGTGTGGGTATTTTCT 60.559 47.826 0.00 0.00 0.00 2.52
831 4934 4.070009 GAGGTTCGTGTGGGTATTTTCTT 58.930 43.478 0.00 0.00 0.00 2.52
832 4935 4.466827 AGGTTCGTGTGGGTATTTTCTTT 58.533 39.130 0.00 0.00 0.00 2.52
833 4936 4.891168 AGGTTCGTGTGGGTATTTTCTTTT 59.109 37.500 0.00 0.00 0.00 2.27
834 4937 5.361571 AGGTTCGTGTGGGTATTTTCTTTTT 59.638 36.000 0.00 0.00 0.00 1.94
870 4973 7.812309 TGATTGATTCAGTAACTTAGACGTG 57.188 36.000 0.00 0.00 0.00 4.49
871 4974 6.310467 TGATTGATTCAGTAACTTAGACGTGC 59.690 38.462 0.00 0.00 0.00 5.34
872 4975 5.128992 TGATTCAGTAACTTAGACGTGCA 57.871 39.130 0.00 0.00 0.00 4.57
873 4976 5.534407 TGATTCAGTAACTTAGACGTGCAA 58.466 37.500 0.00 0.00 0.00 4.08
874 4977 6.163476 TGATTCAGTAACTTAGACGTGCAAT 58.837 36.000 0.00 0.00 0.00 3.56
875 4978 7.317390 TGATTCAGTAACTTAGACGTGCAATA 58.683 34.615 0.00 0.00 0.00 1.90
876 4979 7.815549 TGATTCAGTAACTTAGACGTGCAATAA 59.184 33.333 0.00 0.00 0.00 1.40
877 4980 6.939551 TCAGTAACTTAGACGTGCAATAAC 57.060 37.500 0.00 0.00 0.00 1.89
878 4981 6.684686 TCAGTAACTTAGACGTGCAATAACT 58.315 36.000 0.00 0.00 0.00 2.24
879 4982 7.819644 TCAGTAACTTAGACGTGCAATAACTA 58.180 34.615 0.00 0.00 0.00 2.24
880 4983 8.298854 TCAGTAACTTAGACGTGCAATAACTAA 58.701 33.333 0.00 0.00 0.00 2.24
881 4984 8.918658 CAGTAACTTAGACGTGCAATAACTAAA 58.081 33.333 0.00 0.00 0.00 1.85
882 4985 9.136952 AGTAACTTAGACGTGCAATAACTAAAG 57.863 33.333 0.00 0.00 0.00 1.85
883 4986 6.404712 ACTTAGACGTGCAATAACTAAAGC 57.595 37.500 0.00 0.00 0.00 3.51
884 4987 5.929992 ACTTAGACGTGCAATAACTAAAGCA 59.070 36.000 0.00 0.00 34.10 3.91
891 4994 5.565592 TGCAATAACTAAAGCACATCCAG 57.434 39.130 0.00 0.00 31.05 3.86
892 4995 5.252547 TGCAATAACTAAAGCACATCCAGA 58.747 37.500 0.00 0.00 31.05 3.86
893 4996 5.887598 TGCAATAACTAAAGCACATCCAGAT 59.112 36.000 0.00 0.00 31.05 2.90
894 4997 6.183360 TGCAATAACTAAAGCACATCCAGATG 60.183 38.462 6.09 6.09 44.15 2.90
906 5009 4.603989 CATCCAGATGTGCTCTAGACAT 57.396 45.455 0.00 0.00 36.73 3.06
907 5010 4.958509 CATCCAGATGTGCTCTAGACATT 58.041 43.478 0.00 0.00 34.10 2.71
908 5011 4.662468 TCCAGATGTGCTCTAGACATTC 57.338 45.455 0.00 0.00 34.10 2.67
909 5012 3.386078 TCCAGATGTGCTCTAGACATTCC 59.614 47.826 0.00 0.00 34.10 3.01
910 5013 3.494048 CCAGATGTGCTCTAGACATTCCC 60.494 52.174 0.00 0.00 34.10 3.97
911 5014 3.133542 CAGATGTGCTCTAGACATTCCCA 59.866 47.826 0.00 0.00 34.10 4.37
912 5015 3.133721 AGATGTGCTCTAGACATTCCCAC 59.866 47.826 0.00 0.00 34.10 4.61
913 5016 2.256306 TGTGCTCTAGACATTCCCACA 58.744 47.619 0.00 0.00 0.00 4.17
918 5021 4.943705 TGCTCTAGACATTCCCACATTTTC 59.056 41.667 0.00 0.00 0.00 2.29
977 5367 6.037098 GGCTATATTACTAAGCTGATGGACG 58.963 44.000 0.00 0.00 36.48 4.79
992 5389 3.991536 GACGCCGAGCTTCTCCCAC 62.992 68.421 0.00 0.00 0.00 4.61
1021 5418 1.077429 GAGATGGAGGGGTGGTTGC 60.077 63.158 0.00 0.00 0.00 4.17
1095 5513 1.003839 CGGTGGTAAGAAGCAGCCA 60.004 57.895 0.00 0.00 46.31 4.75
1177 5598 4.088762 CGCACCGCACCATGACAC 62.089 66.667 0.00 0.00 0.00 3.67
1474 5895 1.765657 GAGATGGGCAGCCTCCTCT 60.766 63.158 12.43 10.83 0.00 3.69
1487 5914 0.464870 CTCCTCTGCTCCATGACAGG 59.535 60.000 0.00 0.00 34.57 4.00
1539 5969 3.058160 GTGGCGGTGCTGAGCAAT 61.058 61.111 9.51 0.00 41.47 3.56
1716 6148 1.878522 CGTTAAGAGCAGCCGCGAT 60.879 57.895 8.23 0.00 45.49 4.58
1725 6157 2.436469 AGCCGCGATGTCATGCAA 60.436 55.556 8.23 0.00 0.00 4.08
1789 6242 1.218316 GCTAGTAACGGCAGCACCT 59.782 57.895 0.00 0.00 35.35 4.00
1791 6244 1.801765 GCTAGTAACGGCAGCACCTAC 60.802 57.143 0.00 0.00 35.35 3.18
1813 6358 2.283966 AGGGGCTGCTAGACGTGT 60.284 61.111 0.00 0.00 0.00 4.49
1837 6382 2.997315 CACGGCAGGAGGAGGACA 60.997 66.667 0.00 0.00 0.00 4.02
1922 6467 8.985315 TTTACTTTCTATTGCCATCTCATGAT 57.015 30.769 0.00 0.00 0.00 2.45
1929 6474 8.193953 TCTATTGCCATCTCATGATAACAGTA 57.806 34.615 0.00 0.00 0.00 2.74
2031 7140 4.101430 TGCATCTGATGTAGTTAGCATCCA 59.899 41.667 18.19 1.48 41.32 3.41
2094 7205 8.322906 TGAACTTTGTGTCTAGATAATTGTGG 57.677 34.615 0.00 0.00 0.00 4.17
2101 7212 5.692204 GTGTCTAGATAATTGTGGTCGGATG 59.308 44.000 0.00 0.00 0.00 3.51
2167 7611 8.070171 CACAATTTTTGTACTCTACTCACCTTG 58.930 37.037 0.00 0.00 43.23 3.61
2168 7612 7.773690 ACAATTTTTGTACTCTACTCACCTTGT 59.226 33.333 0.00 0.00 43.27 3.16
2171 7615 6.474140 TTTGTACTCTACTCACCTTGTCAA 57.526 37.500 0.00 0.00 0.00 3.18
2325 7977 7.155328 ACTTCCTCCGATACATAACAATCATC 58.845 38.462 0.00 0.00 0.00 2.92
2404 8056 9.920946 AGGGAGTAGCATTTCTTGAAAATAATA 57.079 29.630 0.00 0.00 0.00 0.98
3039 10082 3.713764 AGAGCTATTCCACACCTATGCTT 59.286 43.478 0.00 0.00 0.00 3.91
3099 10142 0.249398 GAGGTCCATTACGTGTGGCT 59.751 55.000 14.89 8.67 36.66 4.75
3191 10281 7.286215 TCATGTTACTATGGGCTAAGACTAC 57.714 40.000 0.00 0.00 0.00 2.73
3297 10387 5.699839 AGTACTAAAACTACCCGTACAACG 58.300 41.667 0.00 0.00 42.11 4.10
3301 10391 1.717194 AACTACCCGTACAACGCATG 58.283 50.000 0.00 0.00 40.91 4.06
3367 10457 7.014910 CGCCTATCGATGAGAACATGTGTTC 62.015 48.000 16.12 16.12 46.44 3.18
3442 10537 5.633601 TGCACACGTGTTTGAAAATTGTTAA 59.366 32.000 20.79 0.00 0.00 2.01
3493 10589 0.182775 GAAGACCCACACAACCCACT 59.817 55.000 0.00 0.00 0.00 4.00
3506 10602 3.957497 ACAACCCACTACAAATTCAAGCA 59.043 39.130 0.00 0.00 0.00 3.91
3635 10732 1.201647 TCTCAATCGGACGACAGTTCC 59.798 52.381 0.00 0.00 0.00 3.62
3678 10775 6.741992 TGTAAAGATCAGAAAATCGCACAT 57.258 33.333 0.00 0.00 0.00 3.21
3750 10847 1.396996 GATTGCTAAACCGTGTGCGAT 59.603 47.619 0.00 0.00 41.33 4.58
3820 10925 6.718912 TGACCTATCAATCAAACATGGTTTCA 59.281 34.615 0.00 0.00 0.00 2.69
3857 10962 1.447838 CTTGGGTGTAGTCGCGCAT 60.448 57.895 8.75 0.00 44.16 4.73
4001 11107 0.609131 GCACCAGCTACAACCCATGT 60.609 55.000 0.00 0.00 46.36 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.746611 CACTGATTGTATGATAAGCTCGCA 59.253 41.667 0.00 0.00 0.00 5.10
1 2 4.747108 ACACTGATTGTATGATAAGCTCGC 59.253 41.667 0.00 0.00 36.32 5.03
2 3 6.699204 AGAACACTGATTGTATGATAAGCTCG 59.301 38.462 0.00 0.00 37.51 5.03
4 5 7.223582 CGAAGAACACTGATTGTATGATAAGCT 59.776 37.037 0.00 0.00 37.51 3.74
5 6 7.010552 ACGAAGAACACTGATTGTATGATAAGC 59.989 37.037 0.00 0.00 37.51 3.09
6 7 8.412608 ACGAAGAACACTGATTGTATGATAAG 57.587 34.615 0.00 0.00 37.51 1.73
7 8 8.771920 AACGAAGAACACTGATTGTATGATAA 57.228 30.769 0.00 0.00 37.51 1.75
18 19 8.129840 GCTCTAATCTATAACGAAGAACACTGA 58.870 37.037 0.00 0.00 0.00 3.41
19 20 7.915923 TGCTCTAATCTATAACGAAGAACACTG 59.084 37.037 0.00 0.00 0.00 3.66
20 21 7.997482 TGCTCTAATCTATAACGAAGAACACT 58.003 34.615 0.00 0.00 0.00 3.55
21 22 8.129840 TCTGCTCTAATCTATAACGAAGAACAC 58.870 37.037 0.00 0.00 0.00 3.32
22 23 8.221965 TCTGCTCTAATCTATAACGAAGAACA 57.778 34.615 0.00 0.00 0.00 3.18
23 24 8.347035 ACTCTGCTCTAATCTATAACGAAGAAC 58.653 37.037 0.00 0.00 0.00 3.01
24 25 8.453238 ACTCTGCTCTAATCTATAACGAAGAA 57.547 34.615 0.00 0.00 0.00 2.52
27 28 7.068348 ACCAACTCTGCTCTAATCTATAACGAA 59.932 37.037 0.00 0.00 0.00 3.85
28 29 6.546403 ACCAACTCTGCTCTAATCTATAACGA 59.454 38.462 0.00 0.00 0.00 3.85
29 30 6.638873 CACCAACTCTGCTCTAATCTATAACG 59.361 42.308 0.00 0.00 0.00 3.18
30 31 6.926272 CCACCAACTCTGCTCTAATCTATAAC 59.074 42.308 0.00 0.00 0.00 1.89
31 32 6.611642 ACCACCAACTCTGCTCTAATCTATAA 59.388 38.462 0.00 0.00 0.00 0.98
32 33 6.136857 ACCACCAACTCTGCTCTAATCTATA 58.863 40.000 0.00 0.00 0.00 1.31
33 34 4.965532 ACCACCAACTCTGCTCTAATCTAT 59.034 41.667 0.00 0.00 0.00 1.98
34 35 4.353777 ACCACCAACTCTGCTCTAATCTA 58.646 43.478 0.00 0.00 0.00 1.98
36 37 3.618690 ACCACCAACTCTGCTCTAATC 57.381 47.619 0.00 0.00 0.00 1.75
37 38 4.042187 AGAAACCACCAACTCTGCTCTAAT 59.958 41.667 0.00 0.00 0.00 1.73
38 39 3.391296 AGAAACCACCAACTCTGCTCTAA 59.609 43.478 0.00 0.00 0.00 2.10
40 41 1.771255 AGAAACCACCAACTCTGCTCT 59.229 47.619 0.00 0.00 0.00 4.09
41 42 2.262423 AGAAACCACCAACTCTGCTC 57.738 50.000 0.00 0.00 0.00 4.26
43 44 3.366374 GCATAAGAAACCACCAACTCTGC 60.366 47.826 0.00 0.00 0.00 4.26
44 45 3.191371 GGCATAAGAAACCACCAACTCTG 59.809 47.826 0.00 0.00 0.00 3.35
45 46 3.421844 GGCATAAGAAACCACCAACTCT 58.578 45.455 0.00 0.00 0.00 3.24
46 47 2.492088 GGGCATAAGAAACCACCAACTC 59.508 50.000 0.00 0.00 0.00 3.01
47 48 2.110011 AGGGCATAAGAAACCACCAACT 59.890 45.455 0.00 0.00 0.00 3.16
49 50 2.109128 TCAGGGCATAAGAAACCACCAA 59.891 45.455 0.00 0.00 0.00 3.67
51 52 2.507407 TCAGGGCATAAGAAACCACC 57.493 50.000 0.00 0.00 0.00 4.61
53 54 4.853468 TGTATCAGGGCATAAGAAACCA 57.147 40.909 0.00 0.00 0.00 3.67
54 55 6.096846 ACATTTGTATCAGGGCATAAGAAACC 59.903 38.462 0.00 0.00 0.00 3.27
55 56 6.974622 CACATTTGTATCAGGGCATAAGAAAC 59.025 38.462 0.00 0.00 0.00 2.78
59 60 6.889301 ATCACATTTGTATCAGGGCATAAG 57.111 37.500 0.00 0.00 0.00 1.73
61 62 7.688343 TGATATCACATTTGTATCAGGGCATA 58.312 34.615 0.00 0.00 32.64 3.14
62 63 6.545567 TGATATCACATTTGTATCAGGGCAT 58.454 36.000 0.00 0.00 32.64 4.40
63 64 5.939447 TGATATCACATTTGTATCAGGGCA 58.061 37.500 0.00 0.00 32.64 5.36
64 65 6.488006 ACTTGATATCACATTTGTATCAGGGC 59.512 38.462 4.48 0.00 36.69 5.19
65 66 8.347771 CAACTTGATATCACATTTGTATCAGGG 58.652 37.037 4.48 9.29 36.69 4.45
66 67 8.896744 ACAACTTGATATCACATTTGTATCAGG 58.103 33.333 17.98 9.73 36.52 3.86
69 70 9.013490 GCAACAACTTGATATCACATTTGTATC 57.987 33.333 19.05 13.00 31.06 2.24
72 73 6.985117 AGCAACAACTTGATATCACATTTGT 58.015 32.000 15.38 15.38 31.92 2.83
73 74 7.310664 AGAGCAACAACTTGATATCACATTTG 58.689 34.615 4.48 11.03 0.00 2.32
74 75 7.458409 AGAGCAACAACTTGATATCACATTT 57.542 32.000 4.48 0.00 0.00 2.32
75 76 7.826252 ACTAGAGCAACAACTTGATATCACATT 59.174 33.333 4.48 0.00 0.00 2.71
76 77 7.334090 ACTAGAGCAACAACTTGATATCACAT 58.666 34.615 4.48 0.00 0.00 3.21
78 79 7.038659 AGACTAGAGCAACAACTTGATATCAC 58.961 38.462 4.48 0.00 0.00 3.06
79 80 7.175347 AGACTAGAGCAACAACTTGATATCA 57.825 36.000 0.00 0.00 0.00 2.15
87 88 6.428159 CCACATTTAAGACTAGAGCAACAACT 59.572 38.462 0.00 0.00 0.00 3.16
88 89 6.204882 ACCACATTTAAGACTAGAGCAACAAC 59.795 38.462 0.00 0.00 0.00 3.32
89 90 6.204688 CACCACATTTAAGACTAGAGCAACAA 59.795 38.462 0.00 0.00 0.00 2.83
90 91 5.700832 CACCACATTTAAGACTAGAGCAACA 59.299 40.000 0.00 0.00 0.00 3.33
91 92 5.122396 CCACCACATTTAAGACTAGAGCAAC 59.878 44.000 0.00 0.00 0.00 4.17
92 93 5.221843 ACCACCACATTTAAGACTAGAGCAA 60.222 40.000 0.00 0.00 0.00 3.91
93 94 4.286032 ACCACCACATTTAAGACTAGAGCA 59.714 41.667 0.00 0.00 0.00 4.26
94 95 4.833390 ACCACCACATTTAAGACTAGAGC 58.167 43.478 0.00 0.00 0.00 4.09
95 96 7.584987 CAAAACCACCACATTTAAGACTAGAG 58.415 38.462 0.00 0.00 0.00 2.43
97 98 6.149633 GCAAAACCACCACATTTAAGACTAG 58.850 40.000 0.00 0.00 0.00 2.57
100 101 3.733727 CGCAAAACCACCACATTTAAGAC 59.266 43.478 0.00 0.00 0.00 3.01
101 102 3.381908 ACGCAAAACCACCACATTTAAGA 59.618 39.130 0.00 0.00 0.00 2.10
102 103 3.712187 ACGCAAAACCACCACATTTAAG 58.288 40.909 0.00 0.00 0.00 1.85
103 104 3.802948 ACGCAAAACCACCACATTTAA 57.197 38.095 0.00 0.00 0.00 1.52
104 105 4.913335 TTACGCAAAACCACCACATTTA 57.087 36.364 0.00 0.00 0.00 1.40
105 106 3.802948 TTACGCAAAACCACCACATTT 57.197 38.095 0.00 0.00 0.00 2.32
107 108 5.241949 TCTTATTTACGCAAAACCACCACAT 59.758 36.000 0.00 0.00 0.00 3.21
108 109 4.579340 TCTTATTTACGCAAAACCACCACA 59.421 37.500 0.00 0.00 0.00 4.17
109 110 5.110940 TCTTATTTACGCAAAACCACCAC 57.889 39.130 0.00 0.00 0.00 4.16
111 112 5.151389 CACTCTTATTTACGCAAAACCACC 58.849 41.667 0.00 0.00 0.00 4.61
112 113 5.151389 CCACTCTTATTTACGCAAAACCAC 58.849 41.667 0.00 0.00 0.00 4.16
113 114 4.822896 ACCACTCTTATTTACGCAAAACCA 59.177 37.500 0.00 0.00 0.00 3.67
114 115 5.180680 AGACCACTCTTATTTACGCAAAACC 59.819 40.000 0.00 0.00 0.00 3.27
117 118 6.228258 AGAAGACCACTCTTATTTACGCAAA 58.772 36.000 0.00 0.00 36.82 3.68
119 120 5.185249 AGAGAAGACCACTCTTATTTACGCA 59.815 40.000 0.00 0.00 41.20 5.24
129 130 5.559148 AAACATCAAGAGAAGACCACTCT 57.441 39.130 0.00 0.00 45.13 3.24
130 131 6.293680 GGAAAAACATCAAGAGAAGACCACTC 60.294 42.308 0.00 0.00 34.95 3.51
131 132 5.532779 GGAAAAACATCAAGAGAAGACCACT 59.467 40.000 0.00 0.00 0.00 4.00
132 133 5.278512 GGGAAAAACATCAAGAGAAGACCAC 60.279 44.000 0.00 0.00 0.00 4.16
133 134 4.827284 GGGAAAAACATCAAGAGAAGACCA 59.173 41.667 0.00 0.00 0.00 4.02
134 135 4.218635 GGGGAAAAACATCAAGAGAAGACC 59.781 45.833 0.00 0.00 0.00 3.85
137 4240 4.021981 GGTGGGGAAAAACATCAAGAGAAG 60.022 45.833 0.00 0.00 0.00 2.85
140 4243 3.230134 TGGTGGGGAAAAACATCAAGAG 58.770 45.455 0.00 0.00 0.00 2.85
142 4245 3.494223 GGTTGGTGGGGAAAAACATCAAG 60.494 47.826 0.00 0.00 38.28 3.02
148 4251 1.138069 CACTGGTTGGTGGGGAAAAAC 59.862 52.381 0.00 0.00 33.95 2.43
151 4254 0.106419 GTCACTGGTTGGTGGGGAAA 60.106 55.000 0.00 0.00 37.75 3.13
154 4257 2.281484 CGTCACTGGTTGGTGGGG 60.281 66.667 0.00 0.00 37.75 4.96
163 4266 2.207590 CATGATCATGGTCGTCACTGG 58.792 52.381 25.37 0.00 35.24 4.00
169 4272 5.177511 CGTTAATTAGCATGATCATGGTCGT 59.822 40.000 36.50 25.15 45.37 4.34
170 4273 5.177511 ACGTTAATTAGCATGATCATGGTCG 59.822 40.000 36.50 31.73 45.37 4.79
171 4274 6.365839 CACGTTAATTAGCATGATCATGGTC 58.634 40.000 36.50 22.68 45.37 4.02
173 4276 5.049198 AGCACGTTAATTAGCATGATCATGG 60.049 40.000 31.62 16.77 39.16 3.66
174 4277 5.993891 AGCACGTTAATTAGCATGATCATG 58.006 37.500 28.04 28.04 41.60 3.07
175 4278 7.603784 TCATAGCACGTTAATTAGCATGATCAT 59.396 33.333 1.18 1.18 0.00 2.45
196 4299 5.356190 GTGGATGGACATGGCAATATCATAG 59.644 44.000 0.00 0.00 0.00 2.23
229 4332 4.090057 GCCACCGCTTTGTCGCTC 62.090 66.667 0.00 0.00 0.00 5.03
240 4343 1.600636 ATGATAATGGCCGCCACCG 60.601 57.895 16.16 0.00 35.80 4.94
241 4344 1.959085 CATGATAATGGCCGCCACC 59.041 57.895 16.16 5.14 35.80 4.61
244 4347 1.533625 TTAGCATGATAATGGCCGCC 58.466 50.000 1.04 1.04 0.00 6.13
309 4412 3.258228 CATGGCAATATCATACCGCGTA 58.742 45.455 4.92 0.00 0.00 4.42
313 4416 3.673902 TGGACATGGCAATATCATACCG 58.326 45.455 0.00 0.00 0.00 4.02
315 4418 5.124457 GTGGATGGACATGGCAATATCATAC 59.876 44.000 0.00 0.00 0.00 2.39
347 4450 1.534595 GCATGCACTAATGAAAGCCGG 60.535 52.381 14.21 0.00 0.00 6.13
365 4468 2.160219 GCAATGTTCGATTGAGTCAGCA 59.840 45.455 1.45 0.00 0.00 4.41
377 4480 4.102649 TGTCGTCTGTATAGCAATGTTCG 58.897 43.478 0.00 0.00 0.00 3.95
380 4483 6.985188 ATTTTGTCGTCTGTATAGCAATGT 57.015 33.333 0.00 0.00 0.00 2.71
414 4517 2.345641 CCGATCATCACTGTCGTTCAAC 59.654 50.000 0.00 0.00 33.77 3.18
425 4528 3.272334 GTGCGGCCCGATCATCAC 61.272 66.667 7.68 0.14 0.00 3.06
429 4532 1.301637 CATATGTGCGGCCCGATCA 60.302 57.895 7.68 5.05 0.00 2.92
430 4533 2.680913 GCATATGTGCGGCCCGATC 61.681 63.158 7.68 0.00 42.28 3.69
464 4567 1.302383 TACAAATCCAGCGGCCGTTG 61.302 55.000 32.41 32.41 0.00 4.10
519 4622 1.531578 GAGTCCGAAAAACTGCTCCAC 59.468 52.381 0.00 0.00 0.00 4.02
576 4679 1.360911 GAGCTGCTAGACCGTAGCC 59.639 63.158 0.15 0.00 42.63 3.93
580 4683 3.141488 CCCGAGCTGCTAGACCGT 61.141 66.667 11.53 0.00 0.00 4.83
595 4698 1.614241 TAGAGCTCGGCTTGGTTCCC 61.614 60.000 8.37 0.00 39.88 3.97
607 4710 1.142097 GGAAGGTGCCGTAGAGCTC 59.858 63.158 5.27 5.27 0.00 4.09
611 4714 0.683504 GAGGAGGAAGGTGCCGTAGA 60.684 60.000 0.00 0.00 0.00 2.59
616 4719 1.274703 TGATGGAGGAGGAAGGTGCC 61.275 60.000 0.00 0.00 0.00 5.01
626 4729 1.758514 GGAGGACGCTGATGGAGGA 60.759 63.158 0.00 0.00 0.00 3.71
648 4751 0.967380 GCTGCTGGGTTAGGTTGCAT 60.967 55.000 0.00 0.00 33.02 3.96
658 4761 1.078143 GGAAATCGAGCTGCTGGGT 60.078 57.895 7.01 0.00 0.00 4.51
669 4772 9.893305 ACTTTAACAAAACTGAATAGGAAATCG 57.107 29.630 0.00 0.00 0.00 3.34
706 4809 8.888579 ACTTAGATGTACAATAGTTATGGCAC 57.111 34.615 0.00 0.00 0.00 5.01
707 4810 8.148351 GGACTTAGATGTACAATAGTTATGGCA 58.852 37.037 0.00 0.00 0.00 4.92
708 4811 8.148351 TGGACTTAGATGTACAATAGTTATGGC 58.852 37.037 0.00 0.00 0.00 4.40
709 4812 9.698309 CTGGACTTAGATGTACAATAGTTATGG 57.302 37.037 0.00 0.00 29.33 2.74
712 4815 9.251440 ACACTGGACTTAGATGTACAATAGTTA 57.749 33.333 0.00 0.00 29.33 2.24
713 4816 8.135382 ACACTGGACTTAGATGTACAATAGTT 57.865 34.615 0.00 0.00 29.33 2.24
714 4817 7.396339 TGACACTGGACTTAGATGTACAATAGT 59.604 37.037 0.00 0.83 29.33 2.12
715 4818 7.772166 TGACACTGGACTTAGATGTACAATAG 58.228 38.462 0.00 0.00 29.33 1.73
716 4819 7.712204 TGACACTGGACTTAGATGTACAATA 57.288 36.000 0.00 0.00 29.33 1.90
717 4820 6.605471 TGACACTGGACTTAGATGTACAAT 57.395 37.500 0.00 0.00 29.33 2.71
718 4821 6.605471 ATGACACTGGACTTAGATGTACAA 57.395 37.500 0.00 0.00 29.33 2.41
719 4822 6.210584 TCAATGACACTGGACTTAGATGTACA 59.789 38.462 0.00 0.00 0.00 2.90
720 4823 6.631016 TCAATGACACTGGACTTAGATGTAC 58.369 40.000 0.00 0.00 0.00 2.90
721 4824 6.437477 ACTCAATGACACTGGACTTAGATGTA 59.563 38.462 0.00 0.00 0.00 2.29
722 4825 5.247110 ACTCAATGACACTGGACTTAGATGT 59.753 40.000 0.00 0.00 0.00 3.06
723 4826 5.579904 CACTCAATGACACTGGACTTAGATG 59.420 44.000 0.00 0.00 0.00 2.90
724 4827 5.247110 ACACTCAATGACACTGGACTTAGAT 59.753 40.000 0.00 0.00 0.00 1.98
725 4828 4.588951 ACACTCAATGACACTGGACTTAGA 59.411 41.667 0.00 0.00 0.00 2.10
726 4829 4.887748 ACACTCAATGACACTGGACTTAG 58.112 43.478 0.00 0.00 0.00 2.18
727 4830 4.955811 ACACTCAATGACACTGGACTTA 57.044 40.909 0.00 0.00 0.00 2.24
728 4831 3.845781 ACACTCAATGACACTGGACTT 57.154 42.857 0.00 0.00 0.00 3.01
729 4832 4.152647 TCTACACTCAATGACACTGGACT 58.847 43.478 0.00 0.00 0.00 3.85
730 4833 4.521130 TCTACACTCAATGACACTGGAC 57.479 45.455 0.00 0.00 0.00 4.02
731 4834 4.772100 TCATCTACACTCAATGACACTGGA 59.228 41.667 0.00 0.00 0.00 3.86
732 4835 5.077134 TCATCTACACTCAATGACACTGG 57.923 43.478 0.00 0.00 0.00 4.00
733 4836 8.193438 TCTATTCATCTACACTCAATGACACTG 58.807 37.037 0.00 0.00 0.00 3.66
734 4837 8.298729 TCTATTCATCTACACTCAATGACACT 57.701 34.615 0.00 0.00 0.00 3.55
735 4838 9.190858 GATCTATTCATCTACACTCAATGACAC 57.809 37.037 0.00 0.00 0.00 3.67
736 4839 8.078596 CGATCTATTCATCTACACTCAATGACA 58.921 37.037 0.00 0.00 0.00 3.58
737 4840 8.293157 TCGATCTATTCATCTACACTCAATGAC 58.707 37.037 0.00 0.00 0.00 3.06
738 4841 8.293157 GTCGATCTATTCATCTACACTCAATGA 58.707 37.037 0.00 0.00 0.00 2.57
739 4842 8.078596 TGTCGATCTATTCATCTACACTCAATG 58.921 37.037 0.00 0.00 0.00 2.82
740 4843 8.171164 TGTCGATCTATTCATCTACACTCAAT 57.829 34.615 0.00 0.00 0.00 2.57
741 4844 7.283354 ACTGTCGATCTATTCATCTACACTCAA 59.717 37.037 0.00 0.00 28.43 3.02
742 4845 6.768381 ACTGTCGATCTATTCATCTACACTCA 59.232 38.462 0.00 0.00 28.43 3.41
743 4846 7.197071 ACTGTCGATCTATTCATCTACACTC 57.803 40.000 0.00 0.00 28.43 3.51
744 4847 7.575414 AACTGTCGATCTATTCATCTACACT 57.425 36.000 0.00 0.00 28.43 3.55
745 4848 8.635877 AAAACTGTCGATCTATTCATCTACAC 57.364 34.615 0.00 0.00 28.43 2.90
746 4849 9.302345 GAAAAACTGTCGATCTATTCATCTACA 57.698 33.333 0.00 0.00 30.16 2.74
747 4850 8.473016 CGAAAAACTGTCGATCTATTCATCTAC 58.527 37.037 0.00 0.00 41.02 2.59
748 4851 7.167635 GCGAAAAACTGTCGATCTATTCATCTA 59.832 37.037 0.00 0.00 41.02 1.98
749 4852 6.019479 GCGAAAAACTGTCGATCTATTCATCT 60.019 38.462 0.00 0.00 41.02 2.90
750 4853 6.123441 GCGAAAAACTGTCGATCTATTCATC 58.877 40.000 0.00 0.00 41.02 2.92
751 4854 5.580691 TGCGAAAAACTGTCGATCTATTCAT 59.419 36.000 0.00 0.00 41.02 2.57
752 4855 4.926832 TGCGAAAAACTGTCGATCTATTCA 59.073 37.500 0.00 0.00 41.02 2.57
753 4856 5.450376 TGCGAAAAACTGTCGATCTATTC 57.550 39.130 0.00 0.00 41.02 1.75
754 4857 5.856126 TTGCGAAAAACTGTCGATCTATT 57.144 34.783 0.00 0.00 41.02 1.73
755 4858 5.856126 TTTGCGAAAAACTGTCGATCTAT 57.144 34.783 0.00 0.00 41.02 1.98
756 4859 5.660629 TTTTGCGAAAAACTGTCGATCTA 57.339 34.783 0.00 0.00 41.02 1.98
757 4860 4.545823 TTTTGCGAAAAACTGTCGATCT 57.454 36.364 0.00 0.00 41.02 2.75
780 4883 4.154942 AGATCAATGGCACTGGACTTTTT 58.845 39.130 0.00 0.00 0.00 1.94
781 4884 3.771216 AGATCAATGGCACTGGACTTTT 58.229 40.909 0.00 0.00 0.00 2.27
782 4885 3.446442 AGATCAATGGCACTGGACTTT 57.554 42.857 0.00 0.00 0.00 2.66
783 4886 3.446442 AAGATCAATGGCACTGGACTT 57.554 42.857 0.00 0.00 0.00 3.01
784 4887 3.370953 GGTAAGATCAATGGCACTGGACT 60.371 47.826 0.00 0.00 0.00 3.85
785 4888 2.945668 GGTAAGATCAATGGCACTGGAC 59.054 50.000 0.00 0.00 0.00 4.02
786 4889 2.419990 CGGTAAGATCAATGGCACTGGA 60.420 50.000 0.00 0.00 0.00 3.86
787 4890 1.942657 CGGTAAGATCAATGGCACTGG 59.057 52.381 0.00 0.00 0.00 4.00
788 4891 1.942657 CCGGTAAGATCAATGGCACTG 59.057 52.381 0.00 0.00 0.00 3.66
789 4892 1.134098 CCCGGTAAGATCAATGGCACT 60.134 52.381 0.00 0.00 0.00 4.40
790 4893 1.134220 TCCCGGTAAGATCAATGGCAC 60.134 52.381 0.00 0.00 0.00 5.01
791 4894 1.140852 CTCCCGGTAAGATCAATGGCA 59.859 52.381 0.00 0.00 0.00 4.92
792 4895 1.543429 CCTCCCGGTAAGATCAATGGC 60.543 57.143 0.00 0.00 0.00 4.40
793 4896 1.768870 ACCTCCCGGTAAGATCAATGG 59.231 52.381 0.00 0.00 43.29 3.16
794 4897 3.467803 GAACCTCCCGGTAAGATCAATG 58.532 50.000 0.00 0.00 44.73 2.82
795 4898 2.102588 CGAACCTCCCGGTAAGATCAAT 59.897 50.000 0.00 0.00 44.73 2.57
796 4899 1.479323 CGAACCTCCCGGTAAGATCAA 59.521 52.381 0.00 0.00 44.73 2.57
797 4900 1.108776 CGAACCTCCCGGTAAGATCA 58.891 55.000 0.00 0.00 44.73 2.92
798 4901 1.109609 ACGAACCTCCCGGTAAGATC 58.890 55.000 0.00 0.00 44.73 2.75
799 4902 0.822164 CACGAACCTCCCGGTAAGAT 59.178 55.000 0.00 0.00 44.73 2.40
800 4903 0.540365 ACACGAACCTCCCGGTAAGA 60.540 55.000 0.00 0.00 44.73 2.10
801 4904 0.389426 CACACGAACCTCCCGGTAAG 60.389 60.000 0.00 0.00 44.73 2.34
802 4905 1.667151 CACACGAACCTCCCGGTAA 59.333 57.895 0.00 0.00 44.73 2.85
803 4906 2.277591 CCACACGAACCTCCCGGTA 61.278 63.158 0.00 0.00 44.73 4.02
805 4908 4.388499 CCCACACGAACCTCCCGG 62.388 72.222 0.00 0.00 0.00 5.73
806 4909 1.610554 ATACCCACACGAACCTCCCG 61.611 60.000 0.00 0.00 0.00 5.14
807 4910 0.616891 AATACCCACACGAACCTCCC 59.383 55.000 0.00 0.00 0.00 4.30
808 4911 2.484742 AAATACCCACACGAACCTCC 57.515 50.000 0.00 0.00 0.00 4.30
809 4912 3.671716 AGAAAATACCCACACGAACCTC 58.328 45.455 0.00 0.00 0.00 3.85
810 4913 3.782656 AGAAAATACCCACACGAACCT 57.217 42.857 0.00 0.00 0.00 3.50
811 4914 4.841443 AAAGAAAATACCCACACGAACC 57.159 40.909 0.00 0.00 0.00 3.62
844 4947 9.516314 CACGTCTAAGTTACTGAATCAATCATA 57.484 33.333 0.00 0.00 37.44 2.15
845 4948 7.010552 GCACGTCTAAGTTACTGAATCAATCAT 59.989 37.037 0.00 0.00 37.44 2.45
846 4949 6.310467 GCACGTCTAAGTTACTGAATCAATCA 59.690 38.462 0.00 0.00 36.38 2.57
847 4950 6.310467 TGCACGTCTAAGTTACTGAATCAATC 59.690 38.462 0.00 0.00 0.00 2.67
848 4951 6.163476 TGCACGTCTAAGTTACTGAATCAAT 58.837 36.000 0.00 0.00 0.00 2.57
849 4952 5.534407 TGCACGTCTAAGTTACTGAATCAA 58.466 37.500 0.00 0.00 0.00 2.57
850 4953 5.128992 TGCACGTCTAAGTTACTGAATCA 57.871 39.130 0.00 0.00 0.00 2.57
851 4954 6.648725 ATTGCACGTCTAAGTTACTGAATC 57.351 37.500 0.00 0.00 0.00 2.52
852 4955 7.817962 AGTTATTGCACGTCTAAGTTACTGAAT 59.182 33.333 0.00 0.00 0.00 2.57
853 4956 7.149973 AGTTATTGCACGTCTAAGTTACTGAA 58.850 34.615 0.00 0.00 0.00 3.02
854 4957 6.684686 AGTTATTGCACGTCTAAGTTACTGA 58.315 36.000 0.00 0.00 0.00 3.41
855 4958 6.946229 AGTTATTGCACGTCTAAGTTACTG 57.054 37.500 0.00 0.00 0.00 2.74
856 4959 9.136952 CTTTAGTTATTGCACGTCTAAGTTACT 57.863 33.333 0.00 0.00 0.00 2.24
857 4960 7.896782 GCTTTAGTTATTGCACGTCTAAGTTAC 59.103 37.037 0.00 0.00 0.00 2.50
858 4961 7.599621 TGCTTTAGTTATTGCACGTCTAAGTTA 59.400 33.333 0.00 0.00 0.00 2.24
859 4962 6.425721 TGCTTTAGTTATTGCACGTCTAAGTT 59.574 34.615 0.00 0.00 0.00 2.66
860 4963 5.929992 TGCTTTAGTTATTGCACGTCTAAGT 59.070 36.000 0.00 0.00 0.00 2.24
861 4964 6.241385 GTGCTTTAGTTATTGCACGTCTAAG 58.759 40.000 0.00 0.00 44.60 2.18
862 4965 6.160664 GTGCTTTAGTTATTGCACGTCTAA 57.839 37.500 0.00 0.00 44.60 2.10
863 4966 5.773239 GTGCTTTAGTTATTGCACGTCTA 57.227 39.130 0.00 0.00 44.60 2.59
864 4967 4.663636 GTGCTTTAGTTATTGCACGTCT 57.336 40.909 0.00 0.00 44.60 4.18
869 4972 5.252547 TCTGGATGTGCTTTAGTTATTGCA 58.747 37.500 0.00 0.00 0.00 4.08
870 4973 5.818136 TCTGGATGTGCTTTAGTTATTGC 57.182 39.130 0.00 0.00 0.00 3.56
885 4988 4.603989 ATGTCTAGAGCACATCTGGATG 57.396 45.455 8.81 8.81 46.06 3.51
886 4989 4.040217 GGAATGTCTAGAGCACATCTGGAT 59.960 45.833 0.00 0.00 46.06 3.41
887 4990 3.386078 GGAATGTCTAGAGCACATCTGGA 59.614 47.826 0.00 0.00 42.75 3.86
888 4991 3.494048 GGGAATGTCTAGAGCACATCTGG 60.494 52.174 0.00 0.00 39.20 3.86
889 4992 3.133542 TGGGAATGTCTAGAGCACATCTG 59.866 47.826 0.00 0.00 39.20 2.90
890 4993 3.133721 GTGGGAATGTCTAGAGCACATCT 59.866 47.826 0.00 0.00 42.47 2.90
891 4994 3.118629 TGTGGGAATGTCTAGAGCACATC 60.119 47.826 0.00 0.00 33.12 3.06
892 4995 2.840038 TGTGGGAATGTCTAGAGCACAT 59.160 45.455 0.00 0.00 35.94 3.21
893 4996 2.256306 TGTGGGAATGTCTAGAGCACA 58.744 47.619 0.00 0.00 0.00 4.57
894 4997 3.550437 ATGTGGGAATGTCTAGAGCAC 57.450 47.619 0.00 0.00 0.00 4.40
895 4998 4.574674 AAATGTGGGAATGTCTAGAGCA 57.425 40.909 0.00 0.00 0.00 4.26
896 4999 5.189180 AGAAAATGTGGGAATGTCTAGAGC 58.811 41.667 0.00 0.00 0.00 4.09
897 5000 8.970859 AATAGAAAATGTGGGAATGTCTAGAG 57.029 34.615 0.00 0.00 0.00 2.43
898 5001 8.772250 AGAATAGAAAATGTGGGAATGTCTAGA 58.228 33.333 0.00 0.00 0.00 2.43
899 5002 8.970859 AGAATAGAAAATGTGGGAATGTCTAG 57.029 34.615 0.00 0.00 0.00 2.43
900 5003 9.396022 GAAGAATAGAAAATGTGGGAATGTCTA 57.604 33.333 0.00 0.00 0.00 2.59
901 5004 8.112183 AGAAGAATAGAAAATGTGGGAATGTCT 58.888 33.333 0.00 0.00 0.00 3.41
902 5005 8.186821 CAGAAGAATAGAAAATGTGGGAATGTC 58.813 37.037 0.00 0.00 0.00 3.06
903 5006 7.363268 GCAGAAGAATAGAAAATGTGGGAATGT 60.363 37.037 0.00 0.00 0.00 2.71
904 5007 6.976925 GCAGAAGAATAGAAAATGTGGGAATG 59.023 38.462 0.00 0.00 0.00 2.67
905 5008 6.097412 GGCAGAAGAATAGAAAATGTGGGAAT 59.903 38.462 0.00 0.00 0.00 3.01
906 5009 5.418840 GGCAGAAGAATAGAAAATGTGGGAA 59.581 40.000 0.00 0.00 0.00 3.97
907 5010 4.949856 GGCAGAAGAATAGAAAATGTGGGA 59.050 41.667 0.00 0.00 0.00 4.37
908 5011 4.706476 TGGCAGAAGAATAGAAAATGTGGG 59.294 41.667 0.00 0.00 0.00 4.61
909 5012 5.678107 GCTGGCAGAAGAATAGAAAATGTGG 60.678 44.000 20.86 0.00 0.00 4.17
910 5013 5.338365 GCTGGCAGAAGAATAGAAAATGTG 58.662 41.667 20.86 0.00 0.00 3.21
911 5014 4.400567 GGCTGGCAGAAGAATAGAAAATGT 59.599 41.667 20.86 0.00 0.00 2.71
912 5015 4.400251 TGGCTGGCAGAAGAATAGAAAATG 59.600 41.667 20.86 0.00 0.00 2.32
913 5016 4.603131 TGGCTGGCAGAAGAATAGAAAAT 58.397 39.130 20.86 0.00 0.00 1.82
918 5021 4.063689 CTGTATGGCTGGCAGAAGAATAG 58.936 47.826 20.86 5.29 32.39 1.73
992 5389 1.878088 CCTCCATCTCCATGATTTGCG 59.122 52.381 0.00 0.00 32.05 4.85
1021 5418 5.059833 GGATAGTGCTATCAAACTGAAGGG 58.940 45.833 17.76 0.00 42.76 3.95
1203 5624 1.073763 TCACCAAGCTGCAGGTACATT 59.926 47.619 20.51 0.00 36.07 2.71
1263 5684 1.153086 GCCGGCCTTCATCATCTGT 60.153 57.895 18.11 0.00 0.00 3.41
1474 5895 1.985614 CTGACCCTGTCATGGAGCA 59.014 57.895 0.54 0.00 41.94 4.26
1529 5959 1.006220 ACGACGTCATTGCTCAGCA 60.006 52.632 17.16 0.00 36.47 4.41
1558 5988 1.003839 TGAACTTGCCGCCGAAGAT 60.004 52.632 0.00 0.00 0.00 2.40
1725 6157 1.516386 GACGTCGGTGATGATGCGT 60.516 57.895 0.00 0.00 35.20 5.24
1773 6205 0.452987 CGTAGGTGCTGCCGTTACTA 59.547 55.000 0.00 0.00 43.70 1.82
1789 6242 0.185175 TCTAGCAGCCCCTCATCGTA 59.815 55.000 0.00 0.00 0.00 3.43
1791 6244 1.365633 GTCTAGCAGCCCCTCATCG 59.634 63.158 0.00 0.00 0.00 3.84
1813 6358 2.031012 CTCCTGCCGTGTGAGCAA 59.969 61.111 0.00 0.00 40.35 3.91
1837 6382 0.831307 GTTAGAGGGGATTCCAGCGT 59.169 55.000 4.80 0.00 38.24 5.07
1922 6467 8.920174 ACATGCATGTTAGGTATAGTACTGTTA 58.080 33.333 26.61 0.00 37.90 2.41
1929 6474 5.296151 AGCACATGCATGTTAGGTATAGT 57.704 39.130 29.48 1.09 45.16 2.12
2031 7140 2.375174 TGTTTTGTGAGGGACCTAGCAT 59.625 45.455 0.00 0.00 0.00 3.79
2167 7611 2.147150 GAAGTGGAAGAGCACCTTGAC 58.853 52.381 0.00 0.00 34.68 3.18
2168 7612 1.768275 TGAAGTGGAAGAGCACCTTGA 59.232 47.619 0.00 0.00 34.68 3.02
2171 7615 4.042187 ACTTTATGAAGTGGAAGAGCACCT 59.958 41.667 1.44 0.00 44.27 4.00
2321 7973 6.839124 AGTTTGCAATAAATCAGTGGATGA 57.161 33.333 0.00 0.00 43.70 2.92
2322 7974 6.869913 ACAAGTTTGCAATAAATCAGTGGATG 59.130 34.615 0.00 0.00 32.92 3.51
2325 7977 5.634859 GGACAAGTTTGCAATAAATCAGTGG 59.365 40.000 0.00 0.00 0.00 4.00
2338 7990 5.934625 TCTCTCTGATTTAGGACAAGTTTGC 59.065 40.000 0.00 0.00 0.00 3.68
2371 8023 2.693267 AATGCTACTCCCTCCGTTTC 57.307 50.000 0.00 0.00 0.00 2.78
3039 10082 7.285401 GGTGGATTTAAATCTCCATAGCTTTGA 59.715 37.037 23.85 0.00 43.20 2.69
3297 10387 5.172460 AGTCAAAACAAAAATTGGCATGC 57.828 34.783 9.90 9.90 33.66 4.06
3442 10537 4.600062 ACGAGGGGAGAGCAAATAAAATT 58.400 39.130 0.00 0.00 0.00 1.82
3493 10589 7.388224 TCCGTAATAGTTGTGCTTGAATTTGTA 59.612 33.333 0.00 0.00 0.00 2.41
3635 10732 2.024176 AGTGATTGAAATCGTCCGGG 57.976 50.000 0.00 0.00 38.26 5.73
3678 10775 4.398673 TGATTGCGATGGAAATGTCAATCA 59.601 37.500 10.31 10.31 44.00 2.57
3750 10847 2.168496 CCGTGTCCAAAGAGAGACCTA 58.832 52.381 0.00 0.00 31.76 3.08
3857 10962 1.006571 GACCAACTTCGTCGGAGCA 60.007 57.895 0.00 0.00 0.00 4.26
3895 11001 7.358352 CGATTCAGTTCAAACTAAACATTTGCC 60.358 37.037 0.00 0.00 37.08 4.52
4001 11107 6.751888 CGGATGATGCGTGTTCTTGATATATA 59.248 38.462 0.00 0.00 0.00 0.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.