Multiple sequence alignment - TraesCS2B01G603200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G603200 chr2B 100.000 3213 0 0 1 3213 785237481 785240693 0.000000e+00 5934.0
1 TraesCS2B01G603200 chr2B 96.562 698 15 4 2524 3213 793487294 793487990 0.000000e+00 1147.0
2 TraesCS2B01G603200 chr2B 84.428 1111 96 41 1167 2211 785230200 785229101 0.000000e+00 1022.0
3 TraesCS2B01G603200 chr2D 86.492 1873 149 52 1 1856 649387809 649389594 0.000000e+00 1962.0
4 TraesCS2B01G603200 chr2D 94.876 644 30 3 1167 1807 649377309 649376666 0.000000e+00 1003.0
5 TraesCS2B01G603200 chr2D 85.474 475 56 10 332 796 394352792 394353263 1.730000e-132 483.0
6 TraesCS2B01G603200 chr2D 94.286 70 4 0 2059 2128 649389901 649389970 1.220000e-19 108.0
7 TraesCS2B01G603200 chr6B 98.268 693 9 1 2524 3213 351225077 351224385 0.000000e+00 1210.0
8 TraesCS2B01G603200 chr4B 97.550 694 13 2 2524 3213 16558264 16557571 0.000000e+00 1184.0
9 TraesCS2B01G603200 chr2A 96.637 684 19 2 2534 3213 778620452 778619769 0.000000e+00 1133.0
10 TraesCS2B01G603200 chr2A 84.959 1097 74 50 1085 2161 775309073 775308048 0.000000e+00 1027.0
11 TraesCS2B01G603200 chr2A 95.016 642 29 3 1169 1807 775358634 775359275 0.000000e+00 1005.0
12 TraesCS2B01G603200 chr3D 94.957 694 31 2 2524 3213 565644850 565645543 0.000000e+00 1085.0
13 TraesCS2B01G603200 chr3D 92.232 708 35 7 2524 3213 45489730 45490435 0.000000e+00 985.0
14 TraesCS2B01G603200 chr4A 94.517 693 35 2 2524 3213 658261402 658262094 0.000000e+00 1066.0
15 TraesCS2B01G603200 chr4A 84.498 458 58 8 348 797 414231752 414231300 1.060000e-119 440.0
16 TraesCS2B01G603200 chr7B 93.113 697 40 4 2524 3213 164158656 164157961 0.000000e+00 1014.0
17 TraesCS2B01G603200 chr3B 91.210 694 38 6 2524 3213 736417947 736417273 0.000000e+00 922.0
18 TraesCS2B01G603200 chr7D 92.616 623 40 4 2542 3160 325931222 325931842 0.000000e+00 891.0
19 TraesCS2B01G603200 chr1D 86.526 475 53 9 333 799 466940579 466941050 2.210000e-141 512.0
20 TraesCS2B01G603200 chr1A 85.443 474 57 9 333 797 588128325 588127855 1.730000e-132 483.0
21 TraesCS2B01G603200 chr1A 82.500 80 13 1 36 114 79118733 79118812 5.750000e-08 69.4
22 TraesCS2B01G603200 chr1B 85.146 478 58 9 333 801 620125240 620125713 8.060000e-131 477.0
23 TraesCS2B01G603200 chr5D 83.824 476 63 11 333 797 412251406 412251878 1.060000e-119 440.0
24 TraesCS2B01G603200 chr5D 82.979 470 65 10 331 791 50504973 50504510 8.300000e-111 411.0
25 TraesCS2B01G603200 chr5D 83.051 472 55 18 335 791 455822617 455822156 3.860000e-109 405.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G603200 chr2B 785237481 785240693 3212 False 5934 5934 100.000 1 3213 1 chr2B.!!$F1 3212
1 TraesCS2B01G603200 chr2B 793487294 793487990 696 False 1147 1147 96.562 2524 3213 1 chr2B.!!$F2 689
2 TraesCS2B01G603200 chr2B 785229101 785230200 1099 True 1022 1022 84.428 1167 2211 1 chr2B.!!$R1 1044
3 TraesCS2B01G603200 chr2D 649387809 649389970 2161 False 1035 1962 90.389 1 2128 2 chr2D.!!$F2 2127
4 TraesCS2B01G603200 chr2D 649376666 649377309 643 True 1003 1003 94.876 1167 1807 1 chr2D.!!$R1 640
5 TraesCS2B01G603200 chr6B 351224385 351225077 692 True 1210 1210 98.268 2524 3213 1 chr6B.!!$R1 689
6 TraesCS2B01G603200 chr4B 16557571 16558264 693 True 1184 1184 97.550 2524 3213 1 chr4B.!!$R1 689
7 TraesCS2B01G603200 chr2A 778619769 778620452 683 True 1133 1133 96.637 2534 3213 1 chr2A.!!$R2 679
8 TraesCS2B01G603200 chr2A 775308048 775309073 1025 True 1027 1027 84.959 1085 2161 1 chr2A.!!$R1 1076
9 TraesCS2B01G603200 chr2A 775358634 775359275 641 False 1005 1005 95.016 1169 1807 1 chr2A.!!$F1 638
10 TraesCS2B01G603200 chr3D 565644850 565645543 693 False 1085 1085 94.957 2524 3213 1 chr3D.!!$F2 689
11 TraesCS2B01G603200 chr3D 45489730 45490435 705 False 985 985 92.232 2524 3213 1 chr3D.!!$F1 689
12 TraesCS2B01G603200 chr4A 658261402 658262094 692 False 1066 1066 94.517 2524 3213 1 chr4A.!!$F1 689
13 TraesCS2B01G603200 chr7B 164157961 164158656 695 True 1014 1014 93.113 2524 3213 1 chr7B.!!$R1 689
14 TraesCS2B01G603200 chr3B 736417273 736417947 674 True 922 922 91.210 2524 3213 1 chr3B.!!$R1 689
15 TraesCS2B01G603200 chr7D 325931222 325931842 620 False 891 891 92.616 2542 3160 1 chr7D.!!$F1 618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
131 133 0.100503 CCATTTCCGCGAATTGGTCC 59.899 55.0 8.23 0.0 37.91 4.46 F
949 957 0.110056 CCACGCACAATCAAGCTCAC 60.110 55.0 0.00 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1880 1963 0.027716 GCACATCAGCAAGAGCATCG 59.972 55.0 0.0 0.0 45.49 3.84 R
2270 2446 0.026803 GCTGGATAGCTTTTCGTGCG 59.973 55.0 0.0 0.0 46.57 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.713684 TTCATCTGGTTTATAAGAAATCCCATT 57.286 29.630 0.00 0.00 0.00 3.16
52 53 5.528320 CCATTTATTTGCATGGGTTTCATCC 59.472 40.000 0.00 0.00 36.96 3.51
61 62 1.957877 TGGGTTTCATCCGGTTTGTTC 59.042 47.619 0.00 0.00 0.00 3.18
68 70 4.610605 TCATCCGGTTTGTTCAGAAGTA 57.389 40.909 0.00 0.00 0.00 2.24
83 85 8.791675 TGTTCAGAAGTATTTGAAATGTATGCA 58.208 29.630 0.00 0.00 35.29 3.96
84 86 9.793252 GTTCAGAAGTATTTGAAATGTATGCAT 57.207 29.630 3.79 3.79 35.29 3.96
105 107 3.757248 ATCGTTGGATGGCGGCCTC 62.757 63.158 21.46 14.41 0.00 4.70
117 119 2.123726 GGCCTCCCGCATCCATTT 60.124 61.111 0.00 0.00 40.31 2.32
118 120 2.196245 GGCCTCCCGCATCCATTTC 61.196 63.158 0.00 0.00 40.31 2.17
119 121 2.196245 GCCTCCCGCATCCATTTCC 61.196 63.158 0.00 0.00 37.47 3.13
120 122 1.893808 CCTCCCGCATCCATTTCCG 60.894 63.158 0.00 0.00 0.00 4.30
121 123 2.515991 TCCCGCATCCATTTCCGC 60.516 61.111 0.00 0.00 0.00 5.54
122 124 3.952675 CCCGCATCCATTTCCGCG 61.953 66.667 0.00 0.00 46.96 6.46
126 128 3.944871 GCATCCATTTCCGCGAATT 57.055 47.368 8.23 0.00 0.00 2.17
127 129 1.480205 GCATCCATTTCCGCGAATTG 58.520 50.000 8.23 6.92 0.00 2.32
128 130 1.865248 GCATCCATTTCCGCGAATTGG 60.865 52.381 8.23 15.34 41.59 3.16
129 131 1.405105 CATCCATTTCCGCGAATTGGT 59.595 47.619 8.23 4.98 41.24 3.67
130 132 1.091537 TCCATTTCCGCGAATTGGTC 58.908 50.000 8.23 0.00 41.24 4.02
131 133 0.100503 CCATTTCCGCGAATTGGTCC 59.899 55.000 8.23 0.00 37.91 4.46
132 134 0.100503 CATTTCCGCGAATTGGTCCC 59.899 55.000 8.23 0.00 0.00 4.46
133 135 1.035385 ATTTCCGCGAATTGGTCCCC 61.035 55.000 8.23 0.00 0.00 4.81
137 139 1.219664 CGCGAATTGGTCCCCTGTA 59.780 57.895 0.00 0.00 0.00 2.74
139 141 1.087771 GCGAATTGGTCCCCTGTACG 61.088 60.000 0.00 0.00 0.00 3.67
145 147 2.181021 GTCCCCTGTACGCAGACG 59.819 66.667 0.00 0.00 45.28 4.18
151 153 1.153842 CTGTACGCAGACGGATGCA 60.154 57.895 13.55 0.00 46.87 3.96
167 170 1.600916 GCAGAGGAAACTTGCGGGT 60.601 57.895 0.00 0.00 44.43 5.28
185 188 2.172717 GGGTCTTTTGCCCTATGCTAGA 59.827 50.000 0.00 0.00 42.81 2.43
240 243 2.672996 CCAGTTTGACCAGGGCGG 60.673 66.667 0.00 0.00 42.50 6.13
249 252 4.787280 CCAGGGCGGGAGAGGAGT 62.787 72.222 0.00 0.00 0.00 3.85
270 274 1.679305 GTCTCCTCCTCTCCACGCA 60.679 63.158 0.00 0.00 0.00 5.24
271 275 1.076727 TCTCCTCCTCTCCACGCAA 59.923 57.895 0.00 0.00 0.00 4.85
278 282 1.956170 CTCTCCACGCAACAACGCT 60.956 57.895 0.00 0.00 36.19 5.07
290 294 1.338136 ACAACGCTAGGAGATGGGGG 61.338 60.000 0.00 0.00 0.00 5.40
291 295 2.444256 AACGCTAGGAGATGGGGGC 61.444 63.158 0.00 0.00 0.00 5.80
293 297 3.631046 GCTAGGAGATGGGGGCGG 61.631 72.222 0.00 0.00 0.00 6.13
294 298 2.201490 CTAGGAGATGGGGGCGGA 59.799 66.667 0.00 0.00 0.00 5.54
296 300 1.459539 TAGGAGATGGGGGCGGAAG 60.460 63.158 0.00 0.00 0.00 3.46
323 327 1.202348 CCGCACCTTCTCAAATTTCCC 59.798 52.381 0.00 0.00 0.00 3.97
325 329 2.558359 CGCACCTTCTCAAATTTCCCTT 59.442 45.455 0.00 0.00 0.00 3.95
326 330 3.005791 CGCACCTTCTCAAATTTCCCTTT 59.994 43.478 0.00 0.00 0.00 3.11
337 341 2.041251 TTTCCCTTTCAAACGGACGT 57.959 45.000 0.00 0.00 0.00 4.34
345 349 2.060326 TCAAACGGACGTAGCTTCAG 57.940 50.000 0.00 0.00 0.00 3.02
370 374 5.221722 TGACTTTATGAAGCCAAGTCTCACT 60.222 40.000 11.47 0.00 44.57 3.41
371 375 5.625150 ACTTTATGAAGCCAAGTCTCACTT 58.375 37.500 0.00 0.00 36.17 3.16
374 378 7.173390 ACTTTATGAAGCCAAGTCTCACTTTAC 59.827 37.037 0.00 0.00 34.65 2.01
400 404 4.642885 CCCTTTATCAGCCGTCCATTAAAA 59.357 41.667 0.00 0.00 0.00 1.52
407 411 3.315191 CAGCCGTCCATTAAAAATCCGAT 59.685 43.478 0.00 0.00 0.00 4.18
408 412 3.315191 AGCCGTCCATTAAAAATCCGATG 59.685 43.478 0.00 0.00 0.00 3.84
428 432 8.701895 TCCGATGTACTAGATTGACCTATTTTT 58.298 33.333 0.00 0.00 0.00 1.94
470 474 8.479313 AAGTGTTCAGAGAAAATTGGAAAAAC 57.521 30.769 0.00 0.00 0.00 2.43
473 477 7.976175 GTGTTCAGAGAAAATTGGAAAAACTCT 59.024 33.333 0.00 0.00 34.28 3.24
520 524 7.782897 TTGTATTATGGGATTGTTTCAACCA 57.217 32.000 0.00 0.00 35.39 3.67
526 530 5.620738 TGGGATTGTTTCAACCAATTTGA 57.379 34.783 0.00 0.00 42.83 2.69
552 556 7.341445 TGTATGGTTTGTGATTAAATAGCCC 57.659 36.000 0.00 0.00 0.00 5.19
561 565 5.590259 TGTGATTAAATAGCCCTTTGAGCTC 59.410 40.000 6.82 6.82 41.83 4.09
563 567 5.824624 TGATTAAATAGCCCTTTGAGCTCAG 59.175 40.000 17.43 6.23 41.83 3.35
568 572 3.557228 AGCCCTTTGAGCTCAGATAAG 57.443 47.619 17.43 16.89 34.91 1.73
571 575 4.100808 AGCCCTTTGAGCTCAGATAAGTAG 59.899 45.833 17.43 11.83 34.91 2.57
605 609 3.627123 TCACAAGCGATACATCCAAATGG 59.373 43.478 0.00 0.00 37.19 3.16
640 644 9.872757 TTTCACAGAATACTAAACGAAACATTC 57.127 29.630 0.00 0.00 0.00 2.67
718 726 7.464830 AAATAAGGATCAATTCTGTACGTCG 57.535 36.000 0.00 0.00 0.00 5.12
719 727 4.713824 AAGGATCAATTCTGTACGTCGA 57.286 40.909 0.00 0.00 0.00 4.20
720 728 4.920640 AGGATCAATTCTGTACGTCGAT 57.079 40.909 0.00 0.00 0.00 3.59
721 729 4.611943 AGGATCAATTCTGTACGTCGATG 58.388 43.478 2.26 2.26 0.00 3.84
723 731 4.804139 GGATCAATTCTGTACGTCGATGTT 59.196 41.667 16.79 0.15 0.00 2.71
724 732 5.291128 GGATCAATTCTGTACGTCGATGTTT 59.709 40.000 16.79 0.00 0.00 2.83
725 733 6.474427 GGATCAATTCTGTACGTCGATGTTTA 59.526 38.462 16.79 4.60 0.00 2.01
727 735 7.821595 TCAATTCTGTACGTCGATGTTTAAT 57.178 32.000 16.79 7.95 0.00 1.40
728 736 7.671827 TCAATTCTGTACGTCGATGTTTAATG 58.328 34.615 16.79 6.86 0.00 1.90
729 737 6.583912 ATTCTGTACGTCGATGTTTAATGG 57.416 37.500 16.79 1.63 0.00 3.16
730 738 5.313520 TCTGTACGTCGATGTTTAATGGA 57.686 39.130 16.79 3.90 0.00 3.41
731 739 5.898174 TCTGTACGTCGATGTTTAATGGAT 58.102 37.500 16.79 0.00 0.00 3.41
732 740 5.746721 TCTGTACGTCGATGTTTAATGGATG 59.253 40.000 16.79 0.00 0.00 3.51
733 741 4.806775 TGTACGTCGATGTTTAATGGATGG 59.193 41.667 16.79 0.00 0.00 3.51
734 742 3.869065 ACGTCGATGTTTAATGGATGGT 58.131 40.909 3.92 0.00 0.00 3.55
735 743 4.258543 ACGTCGATGTTTAATGGATGGTT 58.741 39.130 3.92 0.00 0.00 3.67
736 744 4.094294 ACGTCGATGTTTAATGGATGGTTG 59.906 41.667 3.92 0.00 0.00 3.77
737 745 4.331443 CGTCGATGTTTAATGGATGGTTGA 59.669 41.667 0.00 0.00 0.00 3.18
738 746 5.007626 CGTCGATGTTTAATGGATGGTTGAT 59.992 40.000 0.00 0.00 0.00 2.57
739 747 6.201997 CGTCGATGTTTAATGGATGGTTGATA 59.798 38.462 0.00 0.00 0.00 2.15
740 748 7.569408 CGTCGATGTTTAATGGATGGTTGATAG 60.569 40.741 0.00 0.00 0.00 2.08
741 749 7.441157 GTCGATGTTTAATGGATGGTTGATAGA 59.559 37.037 0.00 0.00 0.00 1.98
742 750 7.657354 TCGATGTTTAATGGATGGTTGATAGAG 59.343 37.037 0.00 0.00 0.00 2.43
747 755 1.010793 TGGATGGTTGATAGAGGGGGT 59.989 52.381 0.00 0.00 0.00 4.95
758 766 2.156102 AGAGGGGGTCTAAGTTACGG 57.844 55.000 0.00 0.00 31.71 4.02
787 795 3.405831 TGGCTTCATGAAGTCACTCAAG 58.594 45.455 33.38 9.54 46.83 3.02
788 796 2.161211 GGCTTCATGAAGTCACTCAAGC 59.839 50.000 30.48 16.70 42.31 4.01
789 797 3.072944 GCTTCATGAAGTCACTCAAGCT 58.927 45.455 30.88 0.00 40.45 3.74
850 858 2.023888 TCTTCCTTCCAACCCAAAACCA 60.024 45.455 0.00 0.00 0.00 3.67
852 860 2.604139 TCCTTCCAACCCAAAACCATC 58.396 47.619 0.00 0.00 0.00 3.51
858 866 2.171448 CCAACCCAAAACCATCCACAAA 59.829 45.455 0.00 0.00 0.00 2.83
875 883 1.062587 CAAATCACCGCGATTCACCTC 59.937 52.381 8.23 0.00 43.83 3.85
903 911 2.763448 CCCACCAAAACTCACAAGGAAA 59.237 45.455 0.00 0.00 0.00 3.13
904 912 3.181476 CCCACCAAAACTCACAAGGAAAG 60.181 47.826 0.00 0.00 0.00 2.62
905 913 3.181476 CCACCAAAACTCACAAGGAAAGG 60.181 47.826 0.00 0.00 0.00 3.11
906 914 3.699038 CACCAAAACTCACAAGGAAAGGA 59.301 43.478 0.00 0.00 0.00 3.36
907 915 4.159506 CACCAAAACTCACAAGGAAAGGAA 59.840 41.667 0.00 0.00 0.00 3.36
908 916 4.402474 ACCAAAACTCACAAGGAAAGGAAG 59.598 41.667 0.00 0.00 0.00 3.46
909 917 4.202151 CCAAAACTCACAAGGAAAGGAAGG 60.202 45.833 0.00 0.00 0.00 3.46
910 918 4.519906 AAACTCACAAGGAAAGGAAGGA 57.480 40.909 0.00 0.00 0.00 3.36
911 919 4.519906 AACTCACAAGGAAAGGAAGGAA 57.480 40.909 0.00 0.00 0.00 3.36
912 920 4.092116 ACTCACAAGGAAAGGAAGGAAG 57.908 45.455 0.00 0.00 0.00 3.46
913 921 3.181439 ACTCACAAGGAAAGGAAGGAAGG 60.181 47.826 0.00 0.00 0.00 3.46
914 922 2.108250 TCACAAGGAAAGGAAGGAAGGG 59.892 50.000 0.00 0.00 0.00 3.95
915 923 2.108250 CACAAGGAAAGGAAGGAAGGGA 59.892 50.000 0.00 0.00 0.00 4.20
916 924 2.789399 ACAAGGAAAGGAAGGAAGGGAA 59.211 45.455 0.00 0.00 0.00 3.97
917 925 3.157881 CAAGGAAAGGAAGGAAGGGAAC 58.842 50.000 0.00 0.00 0.00 3.62
932 940 0.178918 GGAACCCACCCCAAAATCCA 60.179 55.000 0.00 0.00 0.00 3.41
943 951 2.288702 CCCAAAATCCACGCACAATCAA 60.289 45.455 0.00 0.00 0.00 2.57
944 952 2.988493 CCAAAATCCACGCACAATCAAG 59.012 45.455 0.00 0.00 0.00 3.02
945 953 2.352503 AAATCCACGCACAATCAAGC 57.647 45.000 0.00 0.00 0.00 4.01
946 954 1.538047 AATCCACGCACAATCAAGCT 58.462 45.000 0.00 0.00 0.00 3.74
947 955 1.089920 ATCCACGCACAATCAAGCTC 58.910 50.000 0.00 0.00 0.00 4.09
948 956 0.250252 TCCACGCACAATCAAGCTCA 60.250 50.000 0.00 0.00 0.00 4.26
949 957 0.110056 CCACGCACAATCAAGCTCAC 60.110 55.000 0.00 0.00 0.00 3.51
952 960 0.451628 CGCACAATCAAGCTCACACG 60.452 55.000 0.00 0.00 0.00 4.49
958 979 0.598562 ATCAAGCTCACACGAGTCGT 59.401 50.000 13.56 13.56 41.71 4.34
977 998 4.460873 GCCACGCGCTTGCTTACC 62.461 66.667 5.73 0.00 36.08 2.85
978 999 3.799755 CCACGCGCTTGCTTACCC 61.800 66.667 5.73 0.00 36.08 3.69
979 1000 3.047280 CACGCGCTTGCTTACCCA 61.047 61.111 5.73 0.00 36.08 4.51
993 1014 4.636435 CCCAACCCAACCGCGTCT 62.636 66.667 4.92 0.00 0.00 4.18
997 1018 3.109592 AACCCAACCGCGTCTCCAA 62.110 57.895 4.92 0.00 0.00 3.53
1002 1023 3.325201 AACCGCGTCTCCAATCCCC 62.325 63.158 4.92 0.00 0.00 4.81
1003 1024 4.891727 CCGCGTCTCCAATCCCCG 62.892 72.222 4.92 0.00 0.00 5.73
1006 1027 3.470888 CGTCTCCAATCCCCGCCT 61.471 66.667 0.00 0.00 0.00 5.52
1007 1028 2.190578 GTCTCCAATCCCCGCCTG 59.809 66.667 0.00 0.00 0.00 4.85
1008 1029 3.797353 TCTCCAATCCCCGCCTGC 61.797 66.667 0.00 0.00 0.00 4.85
1009 1030 3.801997 CTCCAATCCCCGCCTGCT 61.802 66.667 0.00 0.00 0.00 4.24
1010 1031 4.113815 TCCAATCCCCGCCTGCTG 62.114 66.667 0.00 0.00 0.00 4.41
1012 1033 4.809496 CAATCCCCGCCTGCTGCT 62.809 66.667 0.00 0.00 38.05 4.24
1013 1034 3.089874 AATCCCCGCCTGCTGCTA 61.090 61.111 0.00 0.00 38.05 3.49
1027 1048 4.772624 CCTGCTGCTACTACTTATATCCCA 59.227 45.833 0.00 0.00 0.00 4.37
1028 1049 5.423610 CCTGCTGCTACTACTTATATCCCAT 59.576 44.000 0.00 0.00 0.00 4.00
1034 1055 5.128991 GCTACTACTTATATCCCATCCACCC 59.871 48.000 0.00 0.00 0.00 4.61
1036 1057 1.628846 ACTTATATCCCATCCACCCGC 59.371 52.381 0.00 0.00 0.00 6.13
1037 1058 0.988832 TTATATCCCATCCACCCGCC 59.011 55.000 0.00 0.00 0.00 6.13
1053 1074 3.864686 CCTCGCCGCAAACCATCG 61.865 66.667 0.00 0.00 0.00 3.84
1054 1075 2.813474 CTCGCCGCAAACCATCGA 60.813 61.111 0.00 0.00 0.00 3.59
1055 1076 2.125310 TCGCCGCAAACCATCGAT 60.125 55.556 0.00 0.00 0.00 3.59
1063 1084 2.097304 CGCAAACCATCGATCAATCCAA 59.903 45.455 0.00 0.00 0.00 3.53
1065 1086 3.129287 GCAAACCATCGATCAATCCAACT 59.871 43.478 0.00 0.00 0.00 3.16
1066 1087 4.335315 GCAAACCATCGATCAATCCAACTA 59.665 41.667 0.00 0.00 0.00 2.24
1068 1089 6.460123 GCAAACCATCGATCAATCCAACTAAT 60.460 38.462 0.00 0.00 0.00 1.73
1069 1090 7.255104 GCAAACCATCGATCAATCCAACTAATA 60.255 37.037 0.00 0.00 0.00 0.98
1070 1091 8.620416 CAAACCATCGATCAATCCAACTAATAA 58.380 33.333 0.00 0.00 0.00 1.40
1071 1092 7.730364 ACCATCGATCAATCCAACTAATAAC 57.270 36.000 0.00 0.00 0.00 1.89
1072 1093 6.710744 ACCATCGATCAATCCAACTAATAACC 59.289 38.462 0.00 0.00 0.00 2.85
1073 1094 6.710295 CCATCGATCAATCCAACTAATAACCA 59.290 38.462 0.00 0.00 0.00 3.67
1074 1095 7.228507 CCATCGATCAATCCAACTAATAACCAA 59.771 37.037 0.00 0.00 0.00 3.67
1075 1096 8.786898 CATCGATCAATCCAACTAATAACCAAT 58.213 33.333 0.00 0.00 0.00 3.16
1076 1097 8.378172 TCGATCAATCCAACTAATAACCAATC 57.622 34.615 0.00 0.00 0.00 2.67
1117 1138 2.849646 CCGGAATCCCCTCCCTCC 60.850 72.222 0.00 0.00 31.03 4.30
1118 1139 2.849646 CGGAATCCCCTCCCTCCC 60.850 72.222 0.00 0.00 31.03 4.30
1119 1140 2.712746 GGAATCCCCTCCCTCCCT 59.287 66.667 0.00 0.00 0.00 4.20
1120 1141 1.462432 GGAATCCCCTCCCTCCCTC 60.462 68.421 0.00 0.00 0.00 4.30
1130 1151 2.606519 CCTCCCTCCCGTCCAACA 60.607 66.667 0.00 0.00 0.00 3.33
1136 1157 4.629523 TCCCGTCCAACAACCGCC 62.630 66.667 0.00 0.00 0.00 6.13
1140 1161 4.025401 GTCCAACAACCGCCGCAG 62.025 66.667 0.00 0.00 0.00 5.18
1141 1162 4.555709 TCCAACAACCGCCGCAGT 62.556 61.111 0.00 0.00 0.00 4.40
1155 1176 2.429058 CAGTCAGCACCACCAGCT 59.571 61.111 0.00 0.00 44.62 4.24
1157 1178 1.840650 AGTCAGCACCACCAGCTCT 60.841 57.895 0.00 0.00 41.14 4.09
1158 1179 1.375268 GTCAGCACCACCAGCTCTC 60.375 63.158 0.00 0.00 41.14 3.20
1159 1180 1.838396 TCAGCACCACCAGCTCTCA 60.838 57.895 0.00 0.00 41.14 3.27
1161 1182 2.359230 GCACCACCAGCTCTCACC 60.359 66.667 0.00 0.00 0.00 4.02
1162 1183 2.047844 CACCACCAGCTCTCACCG 60.048 66.667 0.00 0.00 0.00 4.94
1163 1184 2.524394 ACCACCAGCTCTCACCGT 60.524 61.111 0.00 0.00 0.00 4.83
1165 1186 2.126307 CACCAGCTCTCACCGTCG 60.126 66.667 0.00 0.00 0.00 5.12
1315 1344 1.052617 GGCCCTCATCCTCTACTTCC 58.947 60.000 0.00 0.00 0.00 3.46
1372 1401 3.787001 CCTCCCTCGCCCAGTTCC 61.787 72.222 0.00 0.00 0.00 3.62
1373 1402 3.003173 CTCCCTCGCCCAGTTCCA 61.003 66.667 0.00 0.00 0.00 3.53
1378 1407 2.604686 TCGCCCAGTTCCAGCTCT 60.605 61.111 0.00 0.00 0.00 4.09
1382 1414 1.920325 CCCAGTTCCAGCTCTCCCA 60.920 63.158 0.00 0.00 0.00 4.37
1388 1420 3.333219 CCAGCTCTCCCAGGCCAA 61.333 66.667 5.01 0.00 0.00 4.52
1858 1907 2.033049 TCCGTTCTCTCGATTCGATTCC 59.967 50.000 9.54 0.00 34.61 3.01
1864 1913 3.119291 CTCTCGATTCGATTCCTTGGTG 58.881 50.000 9.54 0.00 34.61 4.17
1865 1914 1.594862 CTCGATTCGATTCCTTGGTGC 59.405 52.381 9.54 0.00 34.61 5.01
1868 1951 2.546778 GATTCGATTCCTTGGTGCGTA 58.453 47.619 0.00 0.00 0.00 4.42
1893 1976 3.030763 TTGCGCGATGCTCTTGCTG 62.031 57.895 12.10 0.00 46.63 4.41
1894 1977 3.190849 GCGCGATGCTCTTGCTGA 61.191 61.111 12.10 0.00 41.73 4.26
1895 1978 2.532256 GCGCGATGCTCTTGCTGAT 61.532 57.895 12.10 0.00 41.73 2.90
1896 1979 1.275953 CGCGATGCTCTTGCTGATG 59.724 57.895 0.00 0.00 40.48 3.07
1923 2022 1.373590 CCCGCCGTGGTTTATCTTGG 61.374 60.000 0.00 0.00 35.15 3.61
1986 2098 4.623167 GGATTCGTAGCTATGCACATACTG 59.377 45.833 8.17 0.00 0.00 2.74
1992 2104 4.327982 AGCTATGCACATACTGTCGATT 57.672 40.909 0.00 0.00 0.00 3.34
2027 2144 3.595709 TCGTTTGGTTCTTTGTTAGCG 57.404 42.857 0.00 0.00 0.00 4.26
2028 2145 3.196463 TCGTTTGGTTCTTTGTTAGCGA 58.804 40.909 0.00 0.00 0.00 4.93
2030 2147 3.906008 CGTTTGGTTCTTTGTTAGCGATG 59.094 43.478 0.00 0.00 0.00 3.84
2031 2148 4.553938 CGTTTGGTTCTTTGTTAGCGATGT 60.554 41.667 0.00 0.00 0.00 3.06
2035 2152 4.453136 TGGTTCTTTGTTAGCGATGTTACC 59.547 41.667 0.00 0.00 0.00 2.85
2037 2154 5.123344 GGTTCTTTGTTAGCGATGTTACCAT 59.877 40.000 0.00 0.00 0.00 3.55
2038 2155 6.314400 GGTTCTTTGTTAGCGATGTTACCATA 59.686 38.462 0.00 0.00 0.00 2.74
2039 2156 6.897259 TCTTTGTTAGCGATGTTACCATAC 57.103 37.500 0.00 0.00 0.00 2.39
2041 2158 5.347620 TTGTTAGCGATGTTACCATACCT 57.652 39.130 0.00 0.00 0.00 3.08
2042 2159 6.468333 TTGTTAGCGATGTTACCATACCTA 57.532 37.500 0.00 0.00 0.00 3.08
2047 2214 6.081872 AGCGATGTTACCATACCTAGTTAC 57.918 41.667 0.00 0.00 0.00 2.50
2054 2221 6.126710 TGTTACCATACCTAGTTACATTGGGG 60.127 42.308 0.00 0.00 0.00 4.96
2068 2239 5.687166 ACATTGGGGTTCTACTATTCGAA 57.313 39.130 0.00 0.00 0.00 3.71
2083 2254 7.869016 ACTATTCGAACCGTGTTGATATATG 57.131 36.000 0.00 0.00 0.00 1.78
2140 2316 6.581712 TGCTGTTGCATTGTATATGTCTCTA 58.418 36.000 0.00 0.00 45.31 2.43
2148 2324 9.211485 TGCATTGTATATGTCTCTATTGATGTG 57.789 33.333 0.00 0.00 0.00 3.21
2163 2339 9.671279 TCTATTGATGTGTTCATTCATACTTGT 57.329 29.630 0.00 0.00 33.34 3.16
2166 2342 6.912082 TGATGTGTTCATTCATACTTGTTGG 58.088 36.000 0.00 0.00 34.06 3.77
2168 2344 6.707440 TGTGTTCATTCATACTTGTTGGTT 57.293 33.333 0.00 0.00 0.00 3.67
2169 2345 6.734137 TGTGTTCATTCATACTTGTTGGTTC 58.266 36.000 0.00 0.00 0.00 3.62
2170 2346 6.319911 TGTGTTCATTCATACTTGTTGGTTCA 59.680 34.615 0.00 0.00 0.00 3.18
2171 2347 7.014134 TGTGTTCATTCATACTTGTTGGTTCAT 59.986 33.333 0.00 0.00 0.00 2.57
2172 2348 7.326789 GTGTTCATTCATACTTGTTGGTTCATG 59.673 37.037 0.00 0.00 0.00 3.07
2174 2350 4.782019 TTCATACTTGTTGGTTCATGGC 57.218 40.909 0.00 0.00 0.00 4.40
2175 2351 2.746904 TCATACTTGTTGGTTCATGGCG 59.253 45.455 0.00 0.00 0.00 5.69
2176 2352 2.552599 TACTTGTTGGTTCATGGCGA 57.447 45.000 0.00 0.00 0.00 5.54
2177 2353 0.951558 ACTTGTTGGTTCATGGCGAC 59.048 50.000 0.00 0.00 0.00 5.19
2179 2355 1.175983 TTGTTGGTTCATGGCGACCC 61.176 55.000 10.13 0.00 34.99 4.46
2180 2356 1.303317 GTTGGTTCATGGCGACCCT 60.303 57.895 10.13 0.00 34.99 4.34
2181 2357 1.002624 TTGGTTCATGGCGACCCTC 60.003 57.895 10.13 0.00 34.99 4.30
2184 2360 1.026718 GGTTCATGGCGACCCTCTTG 61.027 60.000 0.00 0.00 0.00 3.02
2187 2363 0.321564 TCATGGCGACCCTCTTGTTG 60.322 55.000 0.00 0.00 0.00 3.33
2192 2368 1.507141 GCGACCCTCTTGTTGTGGTG 61.507 60.000 0.00 0.00 0.00 4.17
2194 2370 1.474320 CGACCCTCTTGTTGTGGTGAA 60.474 52.381 0.00 0.00 0.00 3.18
2203 2379 4.576053 TCTTGTTGTGGTGAATGAAGTGAG 59.424 41.667 0.00 0.00 0.00 3.51
2211 2387 1.079503 GAATGAAGTGAGGTGCGACC 58.920 55.000 0.00 0.00 38.99 4.79
2212 2388 0.396435 AATGAAGTGAGGTGCGACCA 59.604 50.000 7.86 0.00 41.95 4.02
2213 2389 0.396435 ATGAAGTGAGGTGCGACCAA 59.604 50.000 7.86 0.00 41.95 3.67
2214 2390 0.179234 TGAAGTGAGGTGCGACCAAA 59.821 50.000 7.86 0.00 41.95 3.28
2215 2391 1.202758 TGAAGTGAGGTGCGACCAAAT 60.203 47.619 7.86 0.00 41.95 2.32
2216 2392 1.880027 GAAGTGAGGTGCGACCAAATT 59.120 47.619 7.86 2.08 41.95 1.82
2217 2393 2.851263 AGTGAGGTGCGACCAAATTA 57.149 45.000 7.86 0.00 41.95 1.40
2218 2394 3.350219 AGTGAGGTGCGACCAAATTAT 57.650 42.857 7.86 0.00 41.95 1.28
2219 2395 3.009723 AGTGAGGTGCGACCAAATTATG 58.990 45.455 7.86 0.00 41.95 1.90
2231 2407 4.173036 CCAAATTATGGTGTGTGGTGAC 57.827 45.455 0.00 0.00 44.85 3.67
2232 2408 3.056891 CCAAATTATGGTGTGTGGTGACC 60.057 47.826 0.00 0.00 44.85 4.02
2233 2409 3.517296 AATTATGGTGTGTGGTGACCA 57.483 42.857 0.00 0.00 46.26 4.02
2234 2410 3.517296 ATTATGGTGTGTGGTGACCAA 57.483 42.857 5.57 0.00 45.36 3.67
2235 2411 3.298686 TTATGGTGTGTGGTGACCAAA 57.701 42.857 5.57 0.00 45.36 3.28
2236 2412 2.380064 ATGGTGTGTGGTGACCAAAT 57.620 45.000 5.57 0.00 45.36 2.32
2237 2413 1.686355 TGGTGTGTGGTGACCAAATC 58.314 50.000 5.57 0.02 39.36 2.17
2238 2414 0.958822 GGTGTGTGGTGACCAAATCC 59.041 55.000 5.57 4.46 34.18 3.01
2239 2415 1.686355 GTGTGTGGTGACCAAATCCA 58.314 50.000 5.57 0.00 34.18 3.41
2243 2419 3.014037 TGGTGACCAAATCCACACG 57.986 52.632 0.00 0.00 35.13 4.49
2244 2420 0.536233 TGGTGACCAAATCCACACGG 60.536 55.000 0.00 0.00 35.13 4.94
2245 2421 1.579429 GTGACCAAATCCACACGGC 59.421 57.895 0.00 0.00 33.72 5.68
2246 2422 1.149401 TGACCAAATCCACACGGCA 59.851 52.632 0.00 0.00 0.00 5.69
2247 2423 0.888736 TGACCAAATCCACACGGCAG 60.889 55.000 0.00 0.00 0.00 4.85
2248 2424 0.889186 GACCAAATCCACACGGCAGT 60.889 55.000 0.00 0.00 0.00 4.40
2249 2425 0.889186 ACCAAATCCACACGGCAGTC 60.889 55.000 0.00 0.00 0.00 3.51
2250 2426 1.497278 CAAATCCACACGGCAGTCG 59.503 57.895 0.00 0.00 45.88 4.18
2251 2427 0.948623 CAAATCCACACGGCAGTCGA 60.949 55.000 0.00 0.00 42.43 4.20
2252 2428 0.036388 AAATCCACACGGCAGTCGAT 60.036 50.000 0.00 0.00 42.43 3.59
2253 2429 0.821517 AATCCACACGGCAGTCGATA 59.178 50.000 0.00 0.00 42.43 2.92
2254 2430 0.385751 ATCCACACGGCAGTCGATAG 59.614 55.000 0.00 0.00 42.43 2.08
2255 2431 0.963856 TCCACACGGCAGTCGATAGT 60.964 55.000 0.00 0.00 42.43 2.12
2256 2432 0.736636 CCACACGGCAGTCGATAGTA 59.263 55.000 0.00 0.00 42.43 1.82
2257 2433 1.268589 CCACACGGCAGTCGATAGTAG 60.269 57.143 0.00 0.00 42.43 2.57
2258 2434 1.022735 ACACGGCAGTCGATAGTAGG 58.977 55.000 0.00 0.00 42.43 3.18
2259 2435 1.306148 CACGGCAGTCGATAGTAGGA 58.694 55.000 0.00 0.00 42.43 2.94
2260 2436 1.674441 CACGGCAGTCGATAGTAGGAA 59.326 52.381 0.00 0.00 42.43 3.36
2261 2437 1.948145 ACGGCAGTCGATAGTAGGAAG 59.052 52.381 0.00 0.00 42.43 3.46
2262 2438 1.335142 CGGCAGTCGATAGTAGGAAGC 60.335 57.143 0.00 0.00 42.43 3.86
2263 2439 1.681793 GGCAGTCGATAGTAGGAAGCA 59.318 52.381 0.00 0.00 37.40 3.91
2264 2440 2.544069 GGCAGTCGATAGTAGGAAGCAC 60.544 54.545 0.00 0.00 37.40 4.40
2265 2441 2.855187 GCAGTCGATAGTAGGAAGCACG 60.855 54.545 0.00 0.00 37.40 5.34
2266 2442 2.612672 CAGTCGATAGTAGGAAGCACGA 59.387 50.000 0.00 0.00 37.40 4.35
2267 2443 3.251245 CAGTCGATAGTAGGAAGCACGAT 59.749 47.826 0.00 0.00 37.40 3.73
2268 2444 3.884091 AGTCGATAGTAGGAAGCACGATT 59.116 43.478 0.00 0.00 37.40 3.34
2269 2445 4.338682 AGTCGATAGTAGGAAGCACGATTT 59.661 41.667 0.00 0.00 37.40 2.17
2270 2446 4.676018 GTCGATAGTAGGAAGCACGATTTC 59.324 45.833 0.00 0.00 37.40 2.17
2271 2447 3.664486 CGATAGTAGGAAGCACGATTTCG 59.336 47.826 0.00 0.00 46.33 3.46
2272 2448 1.641577 AGTAGGAAGCACGATTTCGC 58.358 50.000 0.00 0.00 44.43 4.70
2273 2449 1.067142 AGTAGGAAGCACGATTTCGCA 60.067 47.619 0.00 0.00 44.43 5.10
2274 2450 1.060698 GTAGGAAGCACGATTTCGCAC 59.939 52.381 0.00 0.00 44.43 5.34
2275 2451 1.225745 GGAAGCACGATTTCGCACG 60.226 57.895 0.00 0.00 44.43 5.34
2276 2452 1.623081 GGAAGCACGATTTCGCACGA 61.623 55.000 0.00 0.00 44.43 4.35
2277 2453 0.162933 GAAGCACGATTTCGCACGAA 59.837 50.000 0.49 0.49 44.43 3.85
2278 2454 0.584396 AAGCACGATTTCGCACGAAA 59.416 45.000 19.25 19.25 46.37 3.46
2279 2455 0.584396 AGCACGATTTCGCACGAAAA 59.416 45.000 20.60 6.27 45.60 2.29
2280 2456 0.967803 GCACGATTTCGCACGAAAAG 59.032 50.000 20.60 18.55 45.60 2.27
2281 2457 0.967803 CACGATTTCGCACGAAAAGC 59.032 50.000 20.60 14.62 45.60 3.51
2282 2458 0.865769 ACGATTTCGCACGAAAAGCT 59.134 45.000 20.60 6.10 45.60 3.74
2283 2459 2.063266 ACGATTTCGCACGAAAAGCTA 58.937 42.857 20.60 0.00 45.60 3.32
2284 2460 2.671396 ACGATTTCGCACGAAAAGCTAT 59.329 40.909 20.60 5.39 45.60 2.97
2285 2461 3.241995 ACGATTTCGCACGAAAAGCTATC 60.242 43.478 20.60 12.64 45.60 2.08
2286 2462 3.608456 GATTTCGCACGAAAAGCTATCC 58.392 45.455 20.60 3.11 45.60 2.59
2287 2463 2.087501 TTCGCACGAAAAGCTATCCA 57.912 45.000 2.45 0.00 0.00 3.41
2288 2464 1.640428 TCGCACGAAAAGCTATCCAG 58.360 50.000 0.00 0.00 0.00 3.86
2289 2465 5.253036 TTTCGCACGAAAAGCTATCCAGC 62.253 47.826 15.25 0.00 42.16 4.85
2318 2494 2.238942 CCTGTTTTGTTTTCAGGGCC 57.761 50.000 0.00 0.00 43.30 5.80
2319 2495 1.537990 CCTGTTTTGTTTTCAGGGCCG 60.538 52.381 0.00 0.00 43.30 6.13
2320 2496 1.407258 CTGTTTTGTTTTCAGGGCCGA 59.593 47.619 0.00 0.00 0.00 5.54
2321 2497 2.035632 TGTTTTGTTTTCAGGGCCGAT 58.964 42.857 0.00 0.00 0.00 4.18
2322 2498 2.223923 TGTTTTGTTTTCAGGGCCGATG 60.224 45.455 0.00 0.00 0.00 3.84
2323 2499 1.988293 TTTGTTTTCAGGGCCGATGA 58.012 45.000 5.22 5.22 0.00 2.92
2324 2500 1.533625 TTGTTTTCAGGGCCGATGAG 58.466 50.000 9.05 0.00 0.00 2.90
2325 2501 0.400213 TGTTTTCAGGGCCGATGAGT 59.600 50.000 9.05 0.00 0.00 3.41
2326 2502 1.087501 GTTTTCAGGGCCGATGAGTC 58.912 55.000 9.05 2.04 0.00 3.36
2328 2504 2.852495 TTTCAGGGCCGATGAGTCGC 62.852 60.000 9.05 0.00 46.32 5.19
2329 2505 3.842923 CAGGGCCGATGAGTCGCT 61.843 66.667 0.00 0.00 46.32 4.93
2330 2506 3.077556 AGGGCCGATGAGTCGCTT 61.078 61.111 0.00 0.00 46.32 4.68
2331 2507 2.125106 GGGCCGATGAGTCGCTTT 60.125 61.111 0.00 0.00 46.32 3.51
2332 2508 2.464459 GGGCCGATGAGTCGCTTTG 61.464 63.158 0.00 0.00 46.32 2.77
2333 2509 1.741770 GGCCGATGAGTCGCTTTGT 60.742 57.895 0.00 0.00 46.32 2.83
2334 2510 0.459585 GGCCGATGAGTCGCTTTGTA 60.460 55.000 0.00 0.00 46.32 2.41
2335 2511 0.924090 GCCGATGAGTCGCTTTGTAG 59.076 55.000 0.00 0.00 46.32 2.74
2336 2512 1.736032 GCCGATGAGTCGCTTTGTAGT 60.736 52.381 0.00 0.00 46.32 2.73
2337 2513 2.479049 GCCGATGAGTCGCTTTGTAGTA 60.479 50.000 0.00 0.00 46.32 1.82
2338 2514 3.106672 CCGATGAGTCGCTTTGTAGTAC 58.893 50.000 0.00 0.00 46.32 2.73
2339 2515 3.106672 CGATGAGTCGCTTTGTAGTACC 58.893 50.000 0.00 0.00 41.49 3.34
2340 2516 2.624316 TGAGTCGCTTTGTAGTACCG 57.376 50.000 0.00 0.00 0.00 4.02
2341 2517 1.881973 TGAGTCGCTTTGTAGTACCGT 59.118 47.619 0.00 0.00 0.00 4.83
2342 2518 2.294233 TGAGTCGCTTTGTAGTACCGTT 59.706 45.455 0.00 0.00 0.00 4.44
2343 2519 2.660236 GAGTCGCTTTGTAGTACCGTTG 59.340 50.000 0.00 0.00 0.00 4.10
2344 2520 2.035066 AGTCGCTTTGTAGTACCGTTGT 59.965 45.455 0.00 0.00 0.00 3.32
2345 2521 3.253188 AGTCGCTTTGTAGTACCGTTGTA 59.747 43.478 0.00 0.00 0.00 2.41
2346 2522 3.361940 GTCGCTTTGTAGTACCGTTGTAC 59.638 47.826 0.00 0.00 46.36 2.90
2357 2533 3.204505 CGTTGTACGGTGGTGATGT 57.795 52.632 0.00 0.00 38.08 3.06
2358 2534 0.787787 CGTTGTACGGTGGTGATGTG 59.212 55.000 0.00 0.00 38.08 3.21
2359 2535 1.153353 GTTGTACGGTGGTGATGTGG 58.847 55.000 0.00 0.00 0.00 4.17
2360 2536 1.049402 TTGTACGGTGGTGATGTGGA 58.951 50.000 0.00 0.00 0.00 4.02
2361 2537 1.271856 TGTACGGTGGTGATGTGGAT 58.728 50.000 0.00 0.00 0.00 3.41
2362 2538 1.626321 TGTACGGTGGTGATGTGGATT 59.374 47.619 0.00 0.00 0.00 3.01
2363 2539 2.006888 GTACGGTGGTGATGTGGATTG 58.993 52.381 0.00 0.00 0.00 2.67
2364 2540 0.960364 ACGGTGGTGATGTGGATTGC 60.960 55.000 0.00 0.00 0.00 3.56
2365 2541 0.677731 CGGTGGTGATGTGGATTGCT 60.678 55.000 0.00 0.00 0.00 3.91
2366 2542 0.813184 GGTGGTGATGTGGATTGCTG 59.187 55.000 0.00 0.00 0.00 4.41
2367 2543 1.614051 GGTGGTGATGTGGATTGCTGA 60.614 52.381 0.00 0.00 0.00 4.26
2368 2544 2.161855 GTGGTGATGTGGATTGCTGAA 58.838 47.619 0.00 0.00 0.00 3.02
2369 2545 2.756760 GTGGTGATGTGGATTGCTGAAT 59.243 45.455 0.00 0.00 0.00 2.57
2370 2546 3.018856 TGGTGATGTGGATTGCTGAATC 58.981 45.455 0.00 0.00 37.80 2.52
2377 2553 2.028130 GATTGCTGAATCCTGCCGG 58.972 57.895 0.00 0.00 36.55 6.13
2378 2554 2.068277 GATTGCTGAATCCTGCCGGC 62.068 60.000 22.73 22.73 36.55 6.13
2379 2555 2.563013 ATTGCTGAATCCTGCCGGCT 62.563 55.000 29.70 6.37 36.55 5.52
2380 2556 3.207669 GCTGAATCCTGCCGGCTG 61.208 66.667 29.70 27.29 0.00 4.85
2381 2557 3.207669 CTGAATCCTGCCGGCTGC 61.208 66.667 29.70 14.50 41.77 5.25
2382 2558 4.802051 TGAATCCTGCCGGCTGCC 62.802 66.667 29.70 9.11 40.16 4.85
2383 2559 4.802051 GAATCCTGCCGGCTGCCA 62.802 66.667 29.70 16.39 40.16 4.92
2384 2560 4.809496 AATCCTGCCGGCTGCCAG 62.809 66.667 29.70 16.59 40.16 4.85
2399 2575 2.956469 CCAGCACGTGGTTTTGTTG 58.044 52.632 19.29 5.48 42.17 3.33
2400 2576 0.172352 CCAGCACGTGGTTTTGTTGT 59.828 50.000 19.29 0.00 42.17 3.32
2401 2577 1.403514 CCAGCACGTGGTTTTGTTGTT 60.404 47.619 19.29 0.00 42.17 2.83
2402 2578 1.917303 CAGCACGTGGTTTTGTTGTTC 59.083 47.619 19.29 0.00 0.00 3.18
2403 2579 1.542030 AGCACGTGGTTTTGTTGTTCA 59.458 42.857 15.81 0.00 0.00 3.18
2404 2580 1.917303 GCACGTGGTTTTGTTGTTCAG 59.083 47.619 18.88 0.00 0.00 3.02
2405 2581 2.669950 GCACGTGGTTTTGTTGTTCAGT 60.670 45.455 18.88 0.00 0.00 3.41
2406 2582 3.570559 CACGTGGTTTTGTTGTTCAGTT 58.429 40.909 7.95 0.00 0.00 3.16
2407 2583 3.363426 CACGTGGTTTTGTTGTTCAGTTG 59.637 43.478 7.95 0.00 0.00 3.16
2408 2584 2.344142 CGTGGTTTTGTTGTTCAGTTGC 59.656 45.455 0.00 0.00 0.00 4.17
2409 2585 2.344142 GTGGTTTTGTTGTTCAGTTGCG 59.656 45.455 0.00 0.00 0.00 4.85
2410 2586 1.323235 GGTTTTGTTGTTCAGTTGCGC 59.677 47.619 0.00 0.00 0.00 6.09
2411 2587 1.007524 GTTTTGTTGTTCAGTTGCGCG 60.008 47.619 0.00 0.00 0.00 6.86
2412 2588 0.169230 TTTGTTGTTCAGTTGCGCGT 59.831 45.000 8.43 0.00 0.00 6.01
2413 2589 0.522286 TTGTTGTTCAGTTGCGCGTG 60.522 50.000 8.43 0.00 0.00 5.34
2414 2590 1.654137 GTTGTTCAGTTGCGCGTGG 60.654 57.895 8.43 0.00 0.00 4.94
2415 2591 2.829206 TTGTTCAGTTGCGCGTGGG 61.829 57.895 8.43 0.00 0.00 4.61
2416 2592 3.276846 GTTCAGTTGCGCGTGGGT 61.277 61.111 8.43 0.00 0.00 4.51
2417 2593 3.276091 TTCAGTTGCGCGTGGGTG 61.276 61.111 8.43 0.71 0.00 4.61
2418 2594 4.539083 TCAGTTGCGCGTGGGTGT 62.539 61.111 8.43 0.00 0.00 4.16
2419 2595 4.012895 CAGTTGCGCGTGGGTGTC 62.013 66.667 8.43 0.00 0.00 3.67
2431 2607 4.269523 GGTGTCCAGCAGCCACCA 62.270 66.667 12.36 0.00 46.33 4.17
2432 2608 2.980233 GTGTCCAGCAGCCACCAC 60.980 66.667 0.00 0.00 0.00 4.16
2433 2609 4.624364 TGTCCAGCAGCCACCACG 62.624 66.667 0.00 0.00 0.00 4.94
2442 2618 4.980805 GCCACCACGCCGAGACAA 62.981 66.667 0.00 0.00 0.00 3.18
2443 2619 2.738521 CCACCACGCCGAGACAAG 60.739 66.667 0.00 0.00 0.00 3.16
2444 2620 2.338620 CACCACGCCGAGACAAGA 59.661 61.111 0.00 0.00 0.00 3.02
2445 2621 1.734477 CACCACGCCGAGACAAGAG 60.734 63.158 0.00 0.00 0.00 2.85
2446 2622 2.125912 CCACGCCGAGACAAGAGG 60.126 66.667 0.00 0.00 0.00 3.69
2447 2623 2.811317 CACGCCGAGACAAGAGGC 60.811 66.667 0.00 0.00 46.88 4.70
2451 2627 2.977178 CCGAGACAAGAGGCAGCT 59.023 61.111 0.00 0.00 0.00 4.24
2452 2628 1.447489 CCGAGACAAGAGGCAGCTG 60.447 63.158 10.11 10.11 0.00 4.24
2453 2629 1.588597 CGAGACAAGAGGCAGCTGA 59.411 57.895 20.43 0.00 0.00 4.26
2454 2630 0.735632 CGAGACAAGAGGCAGCTGAC 60.736 60.000 20.43 17.00 0.00 3.51
2455 2631 0.735632 GAGACAAGAGGCAGCTGACG 60.736 60.000 20.43 3.87 0.00 4.35
2456 2632 1.739562 GACAAGAGGCAGCTGACGG 60.740 63.158 20.43 10.02 0.00 4.79
2457 2633 2.159819 GACAAGAGGCAGCTGACGGA 62.160 60.000 20.43 0.00 0.00 4.69
2458 2634 1.004560 CAAGAGGCAGCTGACGGAA 60.005 57.895 20.43 0.00 0.00 4.30
2459 2635 1.018226 CAAGAGGCAGCTGACGGAAG 61.018 60.000 20.43 4.10 0.00 3.46
2460 2636 2.794820 AAGAGGCAGCTGACGGAAGC 62.795 60.000 20.43 4.54 43.88 3.86
2466 2642 2.357034 GCTGACGGAAGCGTCCAA 60.357 61.111 19.13 2.69 45.26 3.53
2467 2643 2.383527 GCTGACGGAAGCGTCCAAG 61.384 63.158 19.13 12.99 45.26 3.61
2468 2644 1.006102 CTGACGGAAGCGTCCAAGT 60.006 57.895 19.13 9.14 45.26 3.16
2469 2645 1.006571 TGACGGAAGCGTCCAAGTC 60.007 57.895 19.13 17.42 45.26 3.01
2470 2646 2.049433 ACGGAAGCGTCCAAGTCG 60.049 61.111 19.13 6.60 45.26 4.18
2471 2647 2.257371 CGGAAGCGTCCAAGTCGA 59.743 61.111 19.13 0.00 45.26 4.20
2472 2648 1.801913 CGGAAGCGTCCAAGTCGAG 60.802 63.158 19.13 0.00 45.26 4.04
2473 2649 1.446272 GGAAGCGTCCAAGTCGAGG 60.446 63.158 14.36 0.00 44.26 4.63
2474 2650 1.585006 GAAGCGTCCAAGTCGAGGA 59.415 57.895 0.00 0.00 0.00 3.71
2475 2651 0.456995 GAAGCGTCCAAGTCGAGGAG 60.457 60.000 0.00 0.00 35.42 3.69
2476 2652 2.493907 AAGCGTCCAAGTCGAGGAGC 62.494 60.000 0.00 0.00 35.42 4.70
2477 2653 2.182030 CGTCCAAGTCGAGGAGCC 59.818 66.667 0.00 0.00 35.42 4.70
2478 2654 2.636412 CGTCCAAGTCGAGGAGCCA 61.636 63.158 0.00 0.00 35.42 4.75
2479 2655 1.216710 GTCCAAGTCGAGGAGCCAG 59.783 63.158 0.00 0.00 35.42 4.85
2480 2656 1.984570 TCCAAGTCGAGGAGCCAGG 60.985 63.158 0.00 0.00 0.00 4.45
2481 2657 2.286523 CCAAGTCGAGGAGCCAGGT 61.287 63.158 0.00 0.00 0.00 4.00
2482 2658 1.216710 CAAGTCGAGGAGCCAGGTC 59.783 63.158 0.00 0.00 0.00 3.85
2483 2659 1.228894 AAGTCGAGGAGCCAGGTCA 60.229 57.895 0.00 0.00 0.00 4.02
2484 2660 1.254284 AAGTCGAGGAGCCAGGTCAG 61.254 60.000 0.00 0.00 0.00 3.51
2485 2661 3.071206 TCGAGGAGCCAGGTCAGC 61.071 66.667 0.00 0.00 0.00 4.26
2486 2662 3.385384 CGAGGAGCCAGGTCAGCA 61.385 66.667 0.00 0.00 0.00 4.41
2487 2663 2.947532 CGAGGAGCCAGGTCAGCAA 61.948 63.158 0.00 0.00 0.00 3.91
2488 2664 1.376466 GAGGAGCCAGGTCAGCAAA 59.624 57.895 0.00 0.00 0.00 3.68
2489 2665 0.250901 GAGGAGCCAGGTCAGCAAAA 60.251 55.000 0.00 0.00 0.00 2.44
2490 2666 0.251077 AGGAGCCAGGTCAGCAAAAG 60.251 55.000 0.00 0.00 0.00 2.27
2491 2667 0.250901 GGAGCCAGGTCAGCAAAAGA 60.251 55.000 0.00 0.00 0.00 2.52
2492 2668 1.163554 GAGCCAGGTCAGCAAAAGAG 58.836 55.000 0.00 0.00 0.00 2.85
2493 2669 0.475906 AGCCAGGTCAGCAAAAGAGT 59.524 50.000 0.00 0.00 0.00 3.24
2494 2670 0.877743 GCCAGGTCAGCAAAAGAGTC 59.122 55.000 0.00 0.00 0.00 3.36
2495 2671 1.151668 CCAGGTCAGCAAAAGAGTCG 58.848 55.000 0.00 0.00 0.00 4.18
2496 2672 1.541233 CCAGGTCAGCAAAAGAGTCGT 60.541 52.381 0.00 0.00 0.00 4.34
2497 2673 1.528586 CAGGTCAGCAAAAGAGTCGTG 59.471 52.381 0.00 0.00 0.00 4.35
2498 2674 0.235926 GGTCAGCAAAAGAGTCGTGC 59.764 55.000 8.05 8.05 38.59 5.34
2499 2675 0.111089 GTCAGCAAAAGAGTCGTGCG 60.111 55.000 9.81 6.48 43.16 5.34
2500 2676 0.529773 TCAGCAAAAGAGTCGTGCGT 60.530 50.000 9.81 0.00 43.16 5.24
2501 2677 0.383491 CAGCAAAAGAGTCGTGCGTG 60.383 55.000 9.81 6.34 43.16 5.34
2502 2678 1.082756 GCAAAAGAGTCGTGCGTGG 60.083 57.895 1.52 0.00 0.00 4.94
2503 2679 1.495584 GCAAAAGAGTCGTGCGTGGA 61.496 55.000 1.52 0.00 0.00 4.02
2504 2680 1.148310 CAAAAGAGTCGTGCGTGGAT 58.852 50.000 0.00 0.00 0.00 3.41
2505 2681 1.126846 CAAAAGAGTCGTGCGTGGATC 59.873 52.381 0.00 0.00 0.00 3.36
2506 2682 0.603569 AAAGAGTCGTGCGTGGATCT 59.396 50.000 0.00 0.00 0.00 2.75
2507 2683 1.460504 AAGAGTCGTGCGTGGATCTA 58.539 50.000 0.00 0.00 0.00 1.98
2508 2684 1.681538 AGAGTCGTGCGTGGATCTAT 58.318 50.000 0.00 0.00 0.00 1.98
2509 2685 1.604755 AGAGTCGTGCGTGGATCTATC 59.395 52.381 0.00 0.00 0.00 2.08
2510 2686 1.604755 GAGTCGTGCGTGGATCTATCT 59.395 52.381 0.00 0.00 0.00 1.98
2511 2687 2.806818 GAGTCGTGCGTGGATCTATCTA 59.193 50.000 0.00 0.00 0.00 1.98
2512 2688 2.548904 AGTCGTGCGTGGATCTATCTAC 59.451 50.000 0.00 0.00 35.25 2.59
2513 2689 2.548904 GTCGTGCGTGGATCTATCTACT 59.451 50.000 5.14 0.00 36.30 2.57
2514 2690 2.806818 TCGTGCGTGGATCTATCTACTC 59.193 50.000 5.14 0.00 36.30 2.59
2515 2691 2.095668 CGTGCGTGGATCTATCTACTCC 60.096 54.545 5.14 0.00 36.30 3.85
2516 2692 3.150767 GTGCGTGGATCTATCTACTCCT 58.849 50.000 5.14 0.00 36.30 3.69
2517 2693 4.325119 GTGCGTGGATCTATCTACTCCTA 58.675 47.826 5.14 0.00 36.30 2.94
2518 2694 4.944930 GTGCGTGGATCTATCTACTCCTAT 59.055 45.833 5.14 0.00 36.30 2.57
2519 2695 5.065474 GTGCGTGGATCTATCTACTCCTATC 59.935 48.000 5.14 0.00 36.30 2.08
2520 2696 5.045505 TGCGTGGATCTATCTACTCCTATCT 60.046 44.000 5.14 0.00 36.30 1.98
2521 2697 6.156429 TGCGTGGATCTATCTACTCCTATCTA 59.844 42.308 5.14 0.00 36.30 1.98
2522 2698 7.049133 GCGTGGATCTATCTACTCCTATCTAA 58.951 42.308 5.14 0.00 36.30 2.10
2825 3008 4.906747 AATATGGCAACCCACAATTGTT 57.093 36.364 8.77 0.00 45.77 2.83
3017 3206 6.859112 TTCTTCTAACCTGTCTGCTCTATT 57.141 37.500 0.00 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 5.234757 CGGATGAAACCCATGCAAATAAATG 59.765 40.000 0.00 0.00 42.93 2.32
32 33 3.131933 CCGGATGAAACCCATGCAAATAA 59.868 43.478 0.00 0.00 42.93 1.40
38 39 0.894835 AAACCGGATGAAACCCATGC 59.105 50.000 9.46 0.00 39.85 4.06
43 44 2.882137 TCTGAACAAACCGGATGAAACC 59.118 45.455 9.46 0.35 0.00 3.27
47 48 3.485463 ACTTCTGAACAAACCGGATGA 57.515 42.857 9.46 0.00 0.00 2.92
52 53 7.647715 ACATTTCAAATACTTCTGAACAAACCG 59.352 33.333 0.00 0.00 31.41 4.44
61 62 7.703197 TGCATGCATACATTTCAAATACTTCTG 59.297 33.333 18.46 0.00 32.87 3.02
68 70 5.593968 ACGATGCATGCATACATTTCAAAT 58.406 33.333 32.27 7.50 36.70 2.32
83 85 2.188829 CCGCCATCCAACGATGCAT 61.189 57.895 0.00 0.00 44.00 3.96
84 86 2.823593 CCGCCATCCAACGATGCA 60.824 61.111 0.00 0.00 44.00 3.96
100 102 2.123726 AAATGGATGCGGGAGGCC 60.124 61.111 0.00 0.00 42.61 5.19
105 107 3.952675 CGCGGAAATGGATGCGGG 61.953 66.667 0.00 0.00 46.31 6.13
108 110 1.480205 CAATTCGCGGAAATGGATGC 58.520 50.000 6.13 0.00 0.00 3.91
110 112 1.676006 GACCAATTCGCGGAAATGGAT 59.324 47.619 24.77 11.87 43.18 3.41
113 115 0.100503 GGGACCAATTCGCGGAAATG 59.899 55.000 6.13 0.60 0.00 2.32
114 116 2.489040 GGGACCAATTCGCGGAAAT 58.511 52.632 6.13 0.00 0.00 2.17
115 117 3.990466 GGGACCAATTCGCGGAAA 58.010 55.556 6.13 0.00 0.00 3.13
128 130 2.181021 CGTCTGCGTACAGGGGAC 59.819 66.667 0.00 0.00 44.59 4.46
129 131 2.849096 ATCCGTCTGCGTACAGGGGA 62.849 60.000 8.52 8.52 45.11 4.81
130 132 2.423898 ATCCGTCTGCGTACAGGGG 61.424 63.158 0.00 0.00 44.59 4.79
131 133 1.226974 CATCCGTCTGCGTACAGGG 60.227 63.158 0.00 0.00 44.59 4.45
132 134 1.878522 GCATCCGTCTGCGTACAGG 60.879 63.158 0.00 0.00 44.59 4.00
133 135 1.142185 CTGCATCCGTCTGCGTACAG 61.142 60.000 0.00 0.00 45.30 2.74
137 139 2.182791 CTCTGCATCCGTCTGCGT 59.817 61.111 0.00 0.00 45.30 5.24
139 141 0.391661 TTTCCTCTGCATCCGTCTGC 60.392 55.000 0.00 0.00 42.62 4.26
145 147 0.449388 CGCAAGTTTCCTCTGCATCC 59.551 55.000 0.00 0.00 0.00 3.51
151 153 0.765510 AAGACCCGCAAGTTTCCTCT 59.234 50.000 0.00 0.00 0.00 3.69
185 188 2.247358 GTCATTTGTTGTGGGACCCAT 58.753 47.619 18.51 0.00 35.28 4.00
227 230 2.528127 TCTCCCGCCCTGGTCAAA 60.528 61.111 0.00 0.00 35.15 2.69
249 252 1.679305 GTGGAGAGGAGGAGACGCA 60.679 63.158 0.00 0.00 0.00 5.24
252 255 1.251527 TTGCGTGGAGAGGAGGAGAC 61.252 60.000 0.00 0.00 0.00 3.36
270 274 0.541863 CCCCATCTCCTAGCGTTGTT 59.458 55.000 0.00 0.00 0.00 2.83
271 275 1.338136 CCCCCATCTCCTAGCGTTGT 61.338 60.000 0.00 0.00 0.00 3.32
278 282 1.459539 CTTCCGCCCCCATCTCCTA 60.460 63.158 0.00 0.00 0.00 2.94
293 297 1.578206 GAAGGTGCGGGAGTTGCTTC 61.578 60.000 0.00 0.00 0.00 3.86
294 298 1.600916 GAAGGTGCGGGAGTTGCTT 60.601 57.895 0.00 0.00 0.00 3.91
296 300 2.032681 AGAAGGTGCGGGAGTTGC 59.967 61.111 0.00 0.00 0.00 4.17
323 327 2.798283 TGAAGCTACGTCCGTTTGAAAG 59.202 45.455 0.00 0.00 0.00 2.62
325 329 2.223876 ACTGAAGCTACGTCCGTTTGAA 60.224 45.455 0.00 0.00 0.00 2.69
326 330 1.338973 ACTGAAGCTACGTCCGTTTGA 59.661 47.619 0.00 0.00 0.00 2.69
345 349 4.997395 TGAGACTTGGCTTCATAAAGTCAC 59.003 41.667 15.03 10.28 46.45 3.67
359 363 2.491675 GGGGGTAAAGTGAGACTTGG 57.508 55.000 0.00 0.00 38.66 3.61
400 404 8.423906 AATAGGTCAATCTAGTACATCGGATT 57.576 34.615 0.00 0.00 0.00 3.01
407 411 8.153221 TGGGAAAAATAGGTCAATCTAGTACA 57.847 34.615 0.00 0.00 0.00 2.90
408 412 9.628500 ATTGGGAAAAATAGGTCAATCTAGTAC 57.372 33.333 0.00 0.00 0.00 2.73
428 432 9.323985 CTGAACACTTTAAAATTTTCATTGGGA 57.676 29.630 6.72 0.00 0.00 4.37
492 496 9.482627 GTTGAAACAATCCCATAATACAAAACA 57.517 29.630 0.00 0.00 0.00 2.83
526 530 8.421002 GGGCTATTTAATCACAAACCATACATT 58.579 33.333 0.00 0.00 0.00 2.71
552 556 9.160496 ACATTTTCTACTTATCTGAGCTCAAAG 57.840 33.333 18.85 19.69 0.00 2.77
585 589 3.884895 TCCATTTGGATGTATCGCTTGT 58.115 40.909 0.00 0.00 39.78 3.16
692 700 8.056571 CGACGTACAGAATTGATCCTTATTTTC 58.943 37.037 0.00 0.00 0.00 2.29
693 701 7.762615 TCGACGTACAGAATTGATCCTTATTTT 59.237 33.333 0.00 0.00 0.00 1.82
699 707 4.098044 ACATCGACGTACAGAATTGATCCT 59.902 41.667 0.00 0.00 0.00 3.24
701 709 5.950965 AACATCGACGTACAGAATTGATC 57.049 39.130 0.00 0.00 0.00 2.92
707 715 5.712004 TCCATTAAACATCGACGTACAGAA 58.288 37.500 0.00 0.00 0.00 3.02
708 716 5.313520 TCCATTAAACATCGACGTACAGA 57.686 39.130 0.00 0.00 0.00 3.41
710 718 4.806775 CCATCCATTAAACATCGACGTACA 59.193 41.667 0.00 0.00 0.00 2.90
718 726 7.175641 CCCTCTATCAACCATCCATTAAACATC 59.824 40.741 0.00 0.00 0.00 3.06
719 727 7.006509 CCCTCTATCAACCATCCATTAAACAT 58.993 38.462 0.00 0.00 0.00 2.71
720 728 6.364701 CCCTCTATCAACCATCCATTAAACA 58.635 40.000 0.00 0.00 0.00 2.83
721 729 5.770162 CCCCTCTATCAACCATCCATTAAAC 59.230 44.000 0.00 0.00 0.00 2.01
723 731 4.353788 CCCCCTCTATCAACCATCCATTAA 59.646 45.833 0.00 0.00 0.00 1.40
724 732 3.916349 CCCCCTCTATCAACCATCCATTA 59.084 47.826 0.00 0.00 0.00 1.90
725 733 2.718609 CCCCCTCTATCAACCATCCATT 59.281 50.000 0.00 0.00 0.00 3.16
727 735 1.010793 ACCCCCTCTATCAACCATCCA 59.989 52.381 0.00 0.00 0.00 3.41
728 736 1.700186 GACCCCCTCTATCAACCATCC 59.300 57.143 0.00 0.00 0.00 3.51
729 737 2.695585 AGACCCCCTCTATCAACCATC 58.304 52.381 0.00 0.00 0.00 3.51
730 738 2.897823 AGACCCCCTCTATCAACCAT 57.102 50.000 0.00 0.00 0.00 3.55
731 739 3.013648 ACTTAGACCCCCTCTATCAACCA 59.986 47.826 0.00 0.00 31.11 3.67
732 740 3.655384 ACTTAGACCCCCTCTATCAACC 58.345 50.000 0.00 0.00 31.11 3.77
733 741 5.221204 CGTAACTTAGACCCCCTCTATCAAC 60.221 48.000 0.00 0.00 31.11 3.18
734 742 4.891756 CGTAACTTAGACCCCCTCTATCAA 59.108 45.833 0.00 0.00 31.11 2.57
735 743 4.467769 CGTAACTTAGACCCCCTCTATCA 58.532 47.826 0.00 0.00 31.11 2.15
736 744 3.825585 CCGTAACTTAGACCCCCTCTATC 59.174 52.174 0.00 0.00 31.11 2.08
737 745 3.206185 ACCGTAACTTAGACCCCCTCTAT 59.794 47.826 0.00 0.00 31.11 1.98
738 746 2.582636 ACCGTAACTTAGACCCCCTCTA 59.417 50.000 0.00 0.00 0.00 2.43
739 747 1.360507 ACCGTAACTTAGACCCCCTCT 59.639 52.381 0.00 0.00 0.00 3.69
740 748 1.479730 CACCGTAACTTAGACCCCCTC 59.520 57.143 0.00 0.00 0.00 4.30
741 749 1.077663 TCACCGTAACTTAGACCCCCT 59.922 52.381 0.00 0.00 0.00 4.79
742 750 1.479730 CTCACCGTAACTTAGACCCCC 59.520 57.143 0.00 0.00 0.00 5.40
747 755 3.057033 GCCAAGTCTCACCGTAACTTAGA 60.057 47.826 0.00 0.00 32.20 2.10
758 766 3.406764 ACTTCATGAAGCCAAGTCTCAC 58.593 45.455 30.95 0.00 41.99 3.51
801 809 2.027625 CGCAGGGAAGAACACGTCC 61.028 63.158 0.00 0.00 0.00 4.79
802 810 2.668280 GCGCAGGGAAGAACACGTC 61.668 63.158 0.30 0.00 0.00 4.34
850 858 1.750193 AATCGCGGTGATTTGTGGAT 58.250 45.000 10.85 0.00 45.06 3.41
858 866 0.460284 GTGAGGTGAATCGCGGTGAT 60.460 55.000 6.13 0.00 39.67 3.06
875 883 3.131933 TGTGAGTTTTGGTGGGATTTGTG 59.868 43.478 0.00 0.00 0.00 3.33
903 911 1.140772 GGTGGGTTCCCTTCCTTCCT 61.141 60.000 9.43 0.00 0.00 3.36
904 912 1.383019 GGTGGGTTCCCTTCCTTCC 59.617 63.158 9.43 0.00 0.00 3.46
905 913 1.383019 GGGTGGGTTCCCTTCCTTC 59.617 63.158 9.43 0.00 43.85 3.46
906 914 2.167729 GGGGTGGGTTCCCTTCCTT 61.168 63.158 9.43 0.00 46.27 3.36
907 915 2.534533 GGGGTGGGTTCCCTTCCT 60.535 66.667 9.43 0.00 46.27 3.36
908 916 2.026208 TTTGGGGTGGGTTCCCTTCC 62.026 60.000 9.43 10.84 46.27 3.46
909 917 0.105401 TTTTGGGGTGGGTTCCCTTC 60.105 55.000 9.43 2.79 46.27 3.46
910 918 0.570727 ATTTTGGGGTGGGTTCCCTT 59.429 50.000 9.43 0.00 46.27 3.95
911 919 0.116342 GATTTTGGGGTGGGTTCCCT 59.884 55.000 9.43 0.00 46.27 4.20
912 920 0.907704 GGATTTTGGGGTGGGTTCCC 60.908 60.000 0.12 0.12 46.31 3.97
913 921 0.178918 TGGATTTTGGGGTGGGTTCC 60.179 55.000 0.00 0.00 0.00 3.62
914 922 0.973632 GTGGATTTTGGGGTGGGTTC 59.026 55.000 0.00 0.00 0.00 3.62
915 923 0.830023 CGTGGATTTTGGGGTGGGTT 60.830 55.000 0.00 0.00 0.00 4.11
916 924 1.228737 CGTGGATTTTGGGGTGGGT 60.229 57.895 0.00 0.00 0.00 4.51
917 925 2.645192 GCGTGGATTTTGGGGTGGG 61.645 63.158 0.00 0.00 0.00 4.61
918 926 1.905843 TGCGTGGATTTTGGGGTGG 60.906 57.895 0.00 0.00 0.00 4.61
919 927 1.288752 GTGCGTGGATTTTGGGGTG 59.711 57.895 0.00 0.00 0.00 4.61
920 928 0.757188 TTGTGCGTGGATTTTGGGGT 60.757 50.000 0.00 0.00 0.00 4.95
921 929 0.607620 ATTGTGCGTGGATTTTGGGG 59.392 50.000 0.00 0.00 0.00 4.96
922 930 1.271934 TGATTGTGCGTGGATTTTGGG 59.728 47.619 0.00 0.00 0.00 4.12
923 931 2.721274 TGATTGTGCGTGGATTTTGG 57.279 45.000 0.00 0.00 0.00 3.28
924 932 2.409378 GCTTGATTGTGCGTGGATTTTG 59.591 45.455 0.00 0.00 0.00 2.44
932 940 0.588252 GTGTGAGCTTGATTGTGCGT 59.412 50.000 0.00 0.00 0.00 5.24
943 951 2.556792 CGACGACTCGTGTGAGCT 59.443 61.111 9.27 0.00 46.69 4.09
944 952 3.166630 GCGACGACTCGTGTGAGC 61.167 66.667 9.27 5.59 46.69 4.26
946 954 3.281395 TGGCGACGACTCGTGTGA 61.281 61.111 9.27 0.00 41.37 3.58
947 955 3.097728 GTGGCGACGACTCGTGTG 61.098 66.667 9.27 2.41 41.37 3.82
960 981 4.460873 GGTAAGCAAGCGCGTGGC 62.461 66.667 24.46 18.04 45.49 5.01
971 992 2.632544 GCGGTTGGGTTGGGTAAGC 61.633 63.158 0.00 0.00 0.00 3.09
972 993 2.329614 CGCGGTTGGGTTGGGTAAG 61.330 63.158 0.00 0.00 0.00 2.34
973 994 2.281622 CGCGGTTGGGTTGGGTAA 60.282 61.111 0.00 0.00 0.00 2.85
974 995 3.534054 GACGCGGTTGGGTTGGGTA 62.534 63.158 12.47 0.00 41.99 3.69
975 996 4.941309 GACGCGGTTGGGTTGGGT 62.941 66.667 12.47 0.00 41.99 4.51
976 997 4.636435 AGACGCGGTTGGGTTGGG 62.636 66.667 12.47 0.00 41.99 4.12
977 998 3.047877 GAGACGCGGTTGGGTTGG 61.048 66.667 12.47 0.00 41.99 3.77
978 999 3.047877 GGAGACGCGGTTGGGTTG 61.048 66.667 12.47 0.00 41.99 3.77
979 1000 2.406002 ATTGGAGACGCGGTTGGGTT 62.406 55.000 12.47 0.00 41.99 4.11
993 1014 4.113815 CAGCAGGCGGGGATTGGA 62.114 66.667 0.00 0.00 0.00 3.53
1003 1024 4.382147 GGGATATAAGTAGTAGCAGCAGGC 60.382 50.000 0.00 0.00 45.30 4.85
1004 1025 4.772624 TGGGATATAAGTAGTAGCAGCAGG 59.227 45.833 0.00 0.00 0.00 4.85
1005 1026 5.984695 TGGGATATAAGTAGTAGCAGCAG 57.015 43.478 0.00 0.00 0.00 4.24
1006 1027 5.422331 GGATGGGATATAAGTAGTAGCAGCA 59.578 44.000 0.00 0.00 0.00 4.41
1007 1028 5.422331 TGGATGGGATATAAGTAGTAGCAGC 59.578 44.000 0.00 0.00 0.00 5.25
1008 1029 6.127310 GGTGGATGGGATATAAGTAGTAGCAG 60.127 46.154 0.00 0.00 0.00 4.24
1009 1030 5.720041 GGTGGATGGGATATAAGTAGTAGCA 59.280 44.000 0.00 0.00 0.00 3.49
1010 1031 5.128991 GGGTGGATGGGATATAAGTAGTAGC 59.871 48.000 0.00 0.00 0.00 3.58
1011 1032 5.360144 CGGGTGGATGGGATATAAGTAGTAG 59.640 48.000 0.00 0.00 0.00 2.57
1012 1033 5.266788 CGGGTGGATGGGATATAAGTAGTA 58.733 45.833 0.00 0.00 0.00 1.82
1013 1034 4.094476 CGGGTGGATGGGATATAAGTAGT 58.906 47.826 0.00 0.00 0.00 2.73
1036 1057 3.864686 CGATGGTTTGCGGCGAGG 61.865 66.667 12.98 0.00 0.00 4.63
1037 1058 2.094126 GATCGATGGTTTGCGGCGAG 62.094 60.000 12.98 0.00 34.25 5.03
1040 1061 0.381801 ATTGATCGATGGTTTGCGGC 59.618 50.000 0.54 0.00 0.00 6.53
1047 1068 6.710744 GGTTATTAGTTGGATTGATCGATGGT 59.289 38.462 0.54 0.00 0.00 3.55
1051 1072 8.210946 AGATTGGTTATTAGTTGGATTGATCGA 58.789 33.333 0.00 0.00 0.00 3.59
1065 1086 8.521176 GCGAGGAGTAGATTAGATTGGTTATTA 58.479 37.037 0.00 0.00 0.00 0.98
1066 1087 7.379750 GCGAGGAGTAGATTAGATTGGTTATT 58.620 38.462 0.00 0.00 0.00 1.40
1068 1089 5.243283 GGCGAGGAGTAGATTAGATTGGTTA 59.757 44.000 0.00 0.00 0.00 2.85
1069 1090 4.039366 GGCGAGGAGTAGATTAGATTGGTT 59.961 45.833 0.00 0.00 0.00 3.67
1070 1091 3.574826 GGCGAGGAGTAGATTAGATTGGT 59.425 47.826 0.00 0.00 0.00 3.67
1071 1092 3.366476 CGGCGAGGAGTAGATTAGATTGG 60.366 52.174 0.00 0.00 0.00 3.16
1072 1093 3.253677 ACGGCGAGGAGTAGATTAGATTG 59.746 47.826 16.62 0.00 0.00 2.67
1073 1094 3.488363 ACGGCGAGGAGTAGATTAGATT 58.512 45.455 16.62 0.00 0.00 2.40
1074 1095 3.075884 GACGGCGAGGAGTAGATTAGAT 58.924 50.000 16.62 0.00 0.00 1.98
1075 1096 2.492012 GACGGCGAGGAGTAGATTAGA 58.508 52.381 16.62 0.00 0.00 2.10
1076 1097 1.194997 CGACGGCGAGGAGTAGATTAG 59.805 57.143 16.62 0.00 40.82 1.73
1117 1138 2.358247 CGGTTGTTGGACGGGAGG 60.358 66.667 0.00 0.00 0.00 4.30
1118 1139 3.047877 GCGGTTGTTGGACGGGAG 61.048 66.667 0.00 0.00 0.00 4.30
1119 1140 4.629523 GGCGGTTGTTGGACGGGA 62.630 66.667 0.00 0.00 0.00 5.14
1136 1157 3.046087 CTGGTGGTGCTGACTGCG 61.046 66.667 0.00 0.00 46.63 5.18
1139 1160 1.825281 GAGAGCTGGTGGTGCTGACT 61.825 60.000 0.00 0.00 41.30 3.41
1140 1161 1.375268 GAGAGCTGGTGGTGCTGAC 60.375 63.158 0.00 0.00 41.30 3.51
1141 1162 1.838396 TGAGAGCTGGTGGTGCTGA 60.838 57.895 0.00 0.00 41.30 4.26
1150 1171 2.487428 CTCGACGGTGAGAGCTGG 59.513 66.667 0.00 0.00 38.28 4.85
1155 1176 3.800863 GCGAGCTCGACGGTGAGA 61.801 66.667 38.74 0.00 43.02 3.27
1163 1184 3.531207 CCATCCTGGCGAGCTCGA 61.531 66.667 38.74 18.68 43.02 4.04
1165 1186 2.932130 GAACCCATCCTGGCGAGCTC 62.932 65.000 2.73 2.73 35.79 4.09
1290 1319 2.765807 AGGATGAGGGCCAGGACG 60.766 66.667 6.18 0.00 0.00 4.79
1296 1325 1.052617 GGAAGTAGAGGATGAGGGCC 58.947 60.000 0.00 0.00 0.00 5.80
1315 1344 2.374830 ATCATCTGCGGGCGGAAGAG 62.375 60.000 12.28 4.18 33.40 2.85
1372 1401 2.045536 GTTGGCCTGGGAGAGCTG 60.046 66.667 3.32 0.00 0.00 4.24
1373 1402 3.334054 GGTTGGCCTGGGAGAGCT 61.334 66.667 3.32 0.00 0.00 4.09
1782 1817 1.876156 CAGAACCAGACTTTGCACTCC 59.124 52.381 0.00 0.00 0.00 3.85
1827 1876 2.031245 CGAGAGAACGGATCAGATCAGG 60.031 54.545 14.29 7.22 0.00 3.86
1858 1907 0.591170 CAACCAACCTACGCACCAAG 59.409 55.000 0.00 0.00 0.00 3.61
1864 1913 4.439472 CGCGCAACCAACCTACGC 62.439 66.667 8.75 0.00 45.72 4.42
1865 1914 2.098233 ATCGCGCAACCAACCTACG 61.098 57.895 8.75 0.00 0.00 3.51
1868 1951 3.737172 GCATCGCGCAACCAACCT 61.737 61.111 8.75 0.00 41.79 3.50
1880 1963 0.027716 GCACATCAGCAAGAGCATCG 59.972 55.000 0.00 0.00 45.49 3.84
1915 1998 7.778083 TGCGAAAATCTCTACTACCAAGATAA 58.222 34.615 0.00 0.00 0.00 1.75
1923 2022 6.361214 GCAGTAGATGCGAAAATCTCTACTAC 59.639 42.308 9.94 0.00 45.29 2.73
1949 2049 7.504403 AGCTACGAATCCAACTAGTACTACTA 58.496 38.462 0.00 0.00 0.00 1.82
1964 2064 5.753713 CAGTATGTGCATAGCTACGAATC 57.246 43.478 0.00 0.00 0.00 2.52
1992 2104 2.981805 CAAACGAACGAGTAATCGACCA 59.018 45.455 20.67 0.00 41.43 4.02
2030 2147 6.126681 ACCCCAATGTAACTAGGTATGGTAAC 60.127 42.308 5.42 0.00 0.00 2.50
2031 2148 5.971881 ACCCCAATGTAACTAGGTATGGTAA 59.028 40.000 5.42 0.00 0.00 2.85
2035 2152 6.248569 AGAACCCCAATGTAACTAGGTATG 57.751 41.667 0.00 0.00 0.00 2.39
2037 2154 6.505754 AGTAGAACCCCAATGTAACTAGGTA 58.494 40.000 0.00 0.00 0.00 3.08
2038 2155 5.347978 AGTAGAACCCCAATGTAACTAGGT 58.652 41.667 0.00 0.00 0.00 3.08
2039 2156 5.952347 AGTAGAACCCCAATGTAACTAGG 57.048 43.478 0.00 0.00 0.00 3.02
2041 2158 7.560991 TCGAATAGTAGAACCCCAATGTAACTA 59.439 37.037 0.00 0.00 0.00 2.24
2042 2159 6.381994 TCGAATAGTAGAACCCCAATGTAACT 59.618 38.462 0.00 0.00 0.00 2.24
2047 2214 5.986004 GTTCGAATAGTAGAACCCCAATG 57.014 43.478 0.00 0.00 40.42 2.82
2054 2221 5.156355 TCAACACGGTTCGAATAGTAGAAC 58.844 41.667 0.00 7.53 44.22 3.01
2068 2239 4.251543 TCGATGCATATATCAACACGGT 57.748 40.909 0.00 0.00 0.00 4.83
2083 2254 9.327529 GAATGAAAGAAATCTGAATATCGATGC 57.672 33.333 8.54 0.00 0.00 3.91
2134 2310 9.539825 AGTATGAATGAACACATCAATAGAGAC 57.460 33.333 0.00 0.00 42.54 3.36
2140 2316 8.030692 CCAACAAGTATGAATGAACACATCAAT 58.969 33.333 0.00 0.00 42.54 2.57
2148 2324 6.808212 CCATGAACCAACAAGTATGAATGAAC 59.192 38.462 0.00 0.00 0.00 3.18
2161 2337 4.073052 GGTCGCCATGAACCAACA 57.927 55.556 0.00 0.00 0.00 3.33
2166 2342 0.321653 ACAAGAGGGTCGCCATGAAC 60.322 55.000 0.00 0.00 0.00 3.18
2168 2344 0.321564 CAACAAGAGGGTCGCCATGA 60.322 55.000 0.00 0.00 0.00 3.07
2169 2345 0.606401 ACAACAAGAGGGTCGCCATG 60.606 55.000 0.00 0.00 0.00 3.66
2170 2346 0.606401 CACAACAAGAGGGTCGCCAT 60.606 55.000 0.00 0.00 0.00 4.40
2171 2347 1.227823 CACAACAAGAGGGTCGCCA 60.228 57.895 0.00 0.00 0.00 5.69
2172 2348 1.966451 CCACAACAAGAGGGTCGCC 60.966 63.158 0.00 0.00 0.00 5.54
2174 2350 0.105964 TCACCACAACAAGAGGGTCG 59.894 55.000 0.00 0.00 31.39 4.79
2175 2351 2.341846 TTCACCACAACAAGAGGGTC 57.658 50.000 0.00 0.00 31.39 4.46
2176 2352 2.174639 TCATTCACCACAACAAGAGGGT 59.825 45.455 0.00 0.00 31.39 4.34
2177 2353 2.862541 TCATTCACCACAACAAGAGGG 58.137 47.619 0.00 0.00 31.39 4.30
2179 2355 4.576053 TCACTTCATTCACCACAACAAGAG 59.424 41.667 0.00 0.00 0.00 2.85
2180 2356 4.522114 TCACTTCATTCACCACAACAAGA 58.478 39.130 0.00 0.00 0.00 3.02
2181 2357 4.261322 CCTCACTTCATTCACCACAACAAG 60.261 45.833 0.00 0.00 0.00 3.16
2184 2360 3.003689 CACCTCACTTCATTCACCACAAC 59.996 47.826 0.00 0.00 0.00 3.32
2187 2363 1.537202 GCACCTCACTTCATTCACCAC 59.463 52.381 0.00 0.00 0.00 4.16
2192 2368 1.079503 GGTCGCACCTCACTTCATTC 58.920 55.000 0.00 0.00 34.73 2.67
2194 2370 0.396435 TTGGTCGCACCTCACTTCAT 59.604 50.000 6.83 0.00 39.58 2.57
2211 2387 3.571828 TGGTCACCACACACCATAATTTG 59.428 43.478 0.00 0.00 37.78 2.32
2212 2388 3.838565 TGGTCACCACACACCATAATTT 58.161 40.909 0.00 0.00 37.78 1.82
2213 2389 3.517296 TGGTCACCACACACCATAATT 57.483 42.857 0.00 0.00 37.78 1.40
2214 2390 3.517296 TTGGTCACCACACACCATAAT 57.483 42.857 0.00 0.00 42.42 1.28
2215 2391 3.298686 TTTGGTCACCACACACCATAA 57.701 42.857 0.00 0.00 42.42 1.90
2216 2392 3.417101 GATTTGGTCACCACACACCATA 58.583 45.455 0.00 0.00 42.42 2.74
2217 2393 2.238521 GATTTGGTCACCACACACCAT 58.761 47.619 0.00 0.00 42.42 3.55
2218 2394 1.686355 GATTTGGTCACCACACACCA 58.314 50.000 0.00 0.00 41.13 4.17
2219 2395 0.958822 GGATTTGGTCACCACACACC 59.041 55.000 0.00 0.00 30.78 4.16
2220 2396 1.686355 TGGATTTGGTCACCACACAC 58.314 50.000 0.00 0.00 30.78 3.82
2225 2401 0.536233 CCGTGTGGATTTGGTCACCA 60.536 55.000 0.00 0.00 37.49 4.17
2226 2402 1.862602 GCCGTGTGGATTTGGTCACC 61.863 60.000 0.00 0.00 37.49 4.02
2227 2403 1.169661 TGCCGTGTGGATTTGGTCAC 61.170 55.000 0.00 0.00 37.49 3.67
2228 2404 0.888736 CTGCCGTGTGGATTTGGTCA 60.889 55.000 0.00 0.00 37.49 4.02
2229 2405 0.889186 ACTGCCGTGTGGATTTGGTC 60.889 55.000 0.00 0.00 37.49 4.02
2230 2406 0.889186 GACTGCCGTGTGGATTTGGT 60.889 55.000 0.00 0.00 37.49 3.67
2231 2407 1.875963 GACTGCCGTGTGGATTTGG 59.124 57.895 0.00 0.00 37.49 3.28
2232 2408 0.948623 TCGACTGCCGTGTGGATTTG 60.949 55.000 0.00 0.00 39.75 2.32
2233 2409 0.036388 ATCGACTGCCGTGTGGATTT 60.036 50.000 0.00 0.00 39.75 2.17
2234 2410 0.821517 TATCGACTGCCGTGTGGATT 59.178 50.000 0.00 0.00 36.86 3.01
2235 2411 0.385751 CTATCGACTGCCGTGTGGAT 59.614 55.000 0.00 0.00 38.56 3.41
2236 2412 0.963856 ACTATCGACTGCCGTGTGGA 60.964 55.000 0.00 0.00 39.75 4.02
2237 2413 0.736636 TACTATCGACTGCCGTGTGG 59.263 55.000 0.00 0.00 39.75 4.17
2238 2414 1.268589 CCTACTATCGACTGCCGTGTG 60.269 57.143 0.00 0.00 39.75 3.82
2239 2415 1.022735 CCTACTATCGACTGCCGTGT 58.977 55.000 0.00 0.00 39.75 4.49
2240 2416 1.306148 TCCTACTATCGACTGCCGTG 58.694 55.000 0.00 0.00 39.75 4.94
2241 2417 1.948145 CTTCCTACTATCGACTGCCGT 59.052 52.381 0.00 0.00 39.75 5.68
2242 2418 1.335142 GCTTCCTACTATCGACTGCCG 60.335 57.143 0.00 0.00 40.25 5.69
2243 2419 1.681793 TGCTTCCTACTATCGACTGCC 59.318 52.381 0.00 0.00 0.00 4.85
2244 2420 2.733517 GTGCTTCCTACTATCGACTGC 58.266 52.381 0.00 0.00 0.00 4.40
2245 2421 2.612672 TCGTGCTTCCTACTATCGACTG 59.387 50.000 0.00 0.00 0.00 3.51
2246 2422 2.915349 TCGTGCTTCCTACTATCGACT 58.085 47.619 0.00 0.00 0.00 4.18
2247 2423 3.900388 ATCGTGCTTCCTACTATCGAC 57.100 47.619 0.00 0.00 0.00 4.20
2248 2424 4.554134 CGAAATCGTGCTTCCTACTATCGA 60.554 45.833 0.00 0.00 34.11 3.59
2249 2425 3.664486 CGAAATCGTGCTTCCTACTATCG 59.336 47.826 0.00 0.00 34.11 2.92
2250 2426 3.425858 GCGAAATCGTGCTTCCTACTATC 59.574 47.826 4.59 0.00 42.22 2.08
2251 2427 3.181479 TGCGAAATCGTGCTTCCTACTAT 60.181 43.478 4.59 0.00 42.22 2.12
2252 2428 2.164827 TGCGAAATCGTGCTTCCTACTA 59.835 45.455 4.59 0.00 42.22 1.82
2253 2429 1.067142 TGCGAAATCGTGCTTCCTACT 60.067 47.619 4.59 0.00 42.22 2.57
2254 2430 1.060698 GTGCGAAATCGTGCTTCCTAC 59.939 52.381 4.59 0.00 42.22 3.18
2255 2431 1.355971 GTGCGAAATCGTGCTTCCTA 58.644 50.000 4.59 0.00 42.22 2.94
2256 2432 1.626654 CGTGCGAAATCGTGCTTCCT 61.627 55.000 4.59 0.00 42.22 3.36
2257 2433 1.225745 CGTGCGAAATCGTGCTTCC 60.226 57.895 4.59 0.00 42.22 3.46
2258 2434 0.162933 TTCGTGCGAAATCGTGCTTC 59.837 50.000 4.43 0.00 42.22 3.86
2259 2435 0.584396 TTTCGTGCGAAATCGTGCTT 59.416 45.000 14.66 0.00 38.95 3.91
2260 2436 0.584396 TTTTCGTGCGAAATCGTGCT 59.416 45.000 18.46 0.00 42.71 4.40
2261 2437 0.967803 CTTTTCGTGCGAAATCGTGC 59.032 50.000 18.46 0.00 42.71 5.34
2262 2438 0.967803 GCTTTTCGTGCGAAATCGTG 59.032 50.000 18.46 11.18 42.71 4.35
2263 2439 0.865769 AGCTTTTCGTGCGAAATCGT 59.134 45.000 18.46 5.46 42.71 3.73
2264 2440 2.780361 TAGCTTTTCGTGCGAAATCG 57.220 45.000 18.46 13.90 42.71 3.34
2265 2441 3.063452 TGGATAGCTTTTCGTGCGAAATC 59.937 43.478 18.46 12.86 42.71 2.17
2266 2442 3.006940 TGGATAGCTTTTCGTGCGAAAT 58.993 40.909 18.46 8.35 42.71 2.17
2267 2443 2.415168 CTGGATAGCTTTTCGTGCGAAA 59.585 45.455 14.66 14.66 41.69 3.46
2268 2444 1.999735 CTGGATAGCTTTTCGTGCGAA 59.000 47.619 2.65 2.65 35.28 4.70
2269 2445 1.640428 CTGGATAGCTTTTCGTGCGA 58.360 50.000 0.00 0.00 35.28 5.10
2270 2446 0.026803 GCTGGATAGCTTTTCGTGCG 59.973 55.000 0.00 0.00 46.57 5.34
2271 2447 3.905900 GCTGGATAGCTTTTCGTGC 57.094 52.632 0.00 0.00 46.57 5.34
2292 2468 5.703130 CCCTGAAAACAAAACAGGTGAAAAA 59.297 36.000 0.00 0.00 46.61 1.94
2293 2469 5.241662 CCCTGAAAACAAAACAGGTGAAAA 58.758 37.500 0.00 0.00 46.61 2.29
2294 2470 4.826556 CCCTGAAAACAAAACAGGTGAAA 58.173 39.130 0.00 0.00 46.61 2.69
2295 2471 3.368948 GCCCTGAAAACAAAACAGGTGAA 60.369 43.478 0.00 0.00 46.61 3.18
2296 2472 2.167487 GCCCTGAAAACAAAACAGGTGA 59.833 45.455 0.00 0.00 46.61 4.02
2297 2473 2.549926 GCCCTGAAAACAAAACAGGTG 58.450 47.619 0.00 0.00 46.61 4.00
2298 2474 1.484653 GGCCCTGAAAACAAAACAGGT 59.515 47.619 0.00 0.00 46.61 4.00
2300 2476 1.407258 TCGGCCCTGAAAACAAAACAG 59.593 47.619 0.00 0.00 0.00 3.16
2301 2477 1.475403 TCGGCCCTGAAAACAAAACA 58.525 45.000 0.00 0.00 0.00 2.83
2302 2478 2.035321 TCATCGGCCCTGAAAACAAAAC 59.965 45.455 0.00 0.00 0.00 2.43
2303 2479 2.295909 CTCATCGGCCCTGAAAACAAAA 59.704 45.455 0.00 0.00 0.00 2.44
2304 2480 1.885887 CTCATCGGCCCTGAAAACAAA 59.114 47.619 0.00 0.00 0.00 2.83
2305 2481 1.202879 ACTCATCGGCCCTGAAAACAA 60.203 47.619 0.00 0.00 0.00 2.83
2306 2482 0.400213 ACTCATCGGCCCTGAAAACA 59.600 50.000 0.00 0.00 0.00 2.83
2307 2483 1.087501 GACTCATCGGCCCTGAAAAC 58.912 55.000 0.00 0.00 0.00 2.43
2308 2484 0.391130 CGACTCATCGGCCCTGAAAA 60.391 55.000 0.00 0.00 44.99 2.29
2309 2485 1.218047 CGACTCATCGGCCCTGAAA 59.782 57.895 0.00 0.00 44.99 2.69
2310 2486 2.892640 CGACTCATCGGCCCTGAA 59.107 61.111 0.00 0.00 44.99 3.02
2319 2495 3.106672 CGGTACTACAAAGCGACTCATC 58.893 50.000 0.00 0.00 40.11 2.92
2320 2496 2.490903 ACGGTACTACAAAGCGACTCAT 59.509 45.455 1.38 0.00 40.11 2.90
2321 2497 1.881973 ACGGTACTACAAAGCGACTCA 59.118 47.619 1.38 0.00 40.11 3.41
2322 2498 2.626088 ACGGTACTACAAAGCGACTC 57.374 50.000 1.38 0.00 40.11 3.36
2323 2499 2.035066 ACAACGGTACTACAAAGCGACT 59.965 45.455 1.38 0.00 40.11 4.18
2324 2500 2.397549 ACAACGGTACTACAAAGCGAC 58.602 47.619 1.38 0.00 40.11 5.19
2325 2501 2.798976 ACAACGGTACTACAAAGCGA 57.201 45.000 1.38 0.00 40.11 4.93
2326 2502 2.339400 CGTACAACGGTACTACAAAGCG 59.661 50.000 3.80 0.00 46.20 4.68
2327 2503 3.959609 CGTACAACGGTACTACAAAGC 57.040 47.619 3.80 0.00 46.20 3.51
2339 2515 0.787787 CACATCACCACCGTACAACG 59.212 55.000 0.00 0.00 42.11 4.10
2340 2516 1.153353 CCACATCACCACCGTACAAC 58.847 55.000 0.00 0.00 0.00 3.32
2341 2517 1.049402 TCCACATCACCACCGTACAA 58.951 50.000 0.00 0.00 0.00 2.41
2342 2518 1.271856 ATCCACATCACCACCGTACA 58.728 50.000 0.00 0.00 0.00 2.90
2343 2519 2.006888 CAATCCACATCACCACCGTAC 58.993 52.381 0.00 0.00 0.00 3.67
2344 2520 1.677518 GCAATCCACATCACCACCGTA 60.678 52.381 0.00 0.00 0.00 4.02
2345 2521 0.960364 GCAATCCACATCACCACCGT 60.960 55.000 0.00 0.00 0.00 4.83
2346 2522 0.677731 AGCAATCCACATCACCACCG 60.678 55.000 0.00 0.00 0.00 4.94
2347 2523 0.813184 CAGCAATCCACATCACCACC 59.187 55.000 0.00 0.00 0.00 4.61
2348 2524 1.825090 TCAGCAATCCACATCACCAC 58.175 50.000 0.00 0.00 0.00 4.16
2349 2525 2.583024 TTCAGCAATCCACATCACCA 57.417 45.000 0.00 0.00 0.00 4.17
2350 2526 3.705043 GATTCAGCAATCCACATCACC 57.295 47.619 0.00 0.00 33.38 4.02
2359 2535 2.028130 CCGGCAGGATTCAGCAATC 58.972 57.895 0.00 0.00 41.02 2.67
2360 2536 2.123428 GCCGGCAGGATTCAGCAAT 61.123 57.895 24.80 0.00 41.02 3.56
2361 2537 2.751436 GCCGGCAGGATTCAGCAA 60.751 61.111 24.80 0.00 41.02 3.91
2362 2538 3.720601 AGCCGGCAGGATTCAGCA 61.721 61.111 31.54 0.00 41.02 4.41
2363 2539 3.207669 CAGCCGGCAGGATTCAGC 61.208 66.667 31.54 0.00 41.02 4.26
2364 2540 3.207669 GCAGCCGGCAGGATTCAG 61.208 66.667 31.54 8.42 43.97 3.02
2377 2553 3.137637 AAAACCACGTGCTGGCAGC 62.138 57.895 31.91 31.91 45.32 5.25
2378 2554 1.299316 CAAAACCACGTGCTGGCAG 60.299 57.895 10.91 10.94 45.32 4.85
2379 2555 1.599606 AACAAAACCACGTGCTGGCA 61.600 50.000 10.91 0.00 45.32 4.92
2380 2556 1.140804 AACAAAACCACGTGCTGGC 59.859 52.632 10.91 0.00 45.32 4.85
2382 2558 1.917303 GAACAACAAAACCACGTGCTG 59.083 47.619 10.91 6.82 0.00 4.41
2383 2559 1.542030 TGAACAACAAAACCACGTGCT 59.458 42.857 10.91 0.00 0.00 4.40
2384 2560 1.917303 CTGAACAACAAAACCACGTGC 59.083 47.619 10.91 0.00 0.00 5.34
2385 2561 3.210358 ACTGAACAACAAAACCACGTG 57.790 42.857 9.08 9.08 0.00 4.49
2386 2562 3.570559 CAACTGAACAACAAAACCACGT 58.429 40.909 0.00 0.00 0.00 4.49
2387 2563 2.344142 GCAACTGAACAACAAAACCACG 59.656 45.455 0.00 0.00 0.00 4.94
2388 2564 2.344142 CGCAACTGAACAACAAAACCAC 59.656 45.455 0.00 0.00 0.00 4.16
2389 2565 2.600731 CGCAACTGAACAACAAAACCA 58.399 42.857 0.00 0.00 0.00 3.67
2390 2566 1.323235 GCGCAACTGAACAACAAAACC 59.677 47.619 0.30 0.00 0.00 3.27
2391 2567 1.007524 CGCGCAACTGAACAACAAAAC 60.008 47.619 8.75 0.00 0.00 2.43
2392 2568 1.263776 CGCGCAACTGAACAACAAAA 58.736 45.000 8.75 0.00 0.00 2.44
2393 2569 0.169230 ACGCGCAACTGAACAACAAA 59.831 45.000 5.73 0.00 0.00 2.83
2394 2570 0.522286 CACGCGCAACTGAACAACAA 60.522 50.000 5.73 0.00 0.00 2.83
2395 2571 1.061729 CACGCGCAACTGAACAACA 59.938 52.632 5.73 0.00 0.00 3.33
2396 2572 1.654137 CCACGCGCAACTGAACAAC 60.654 57.895 5.73 0.00 0.00 3.32
2397 2573 2.712539 CCACGCGCAACTGAACAA 59.287 55.556 5.73 0.00 0.00 2.83
2398 2574 3.276091 CCCACGCGCAACTGAACA 61.276 61.111 5.73 0.00 0.00 3.18
2399 2575 3.276846 ACCCACGCGCAACTGAAC 61.277 61.111 5.73 0.00 0.00 3.18
2400 2576 3.276091 CACCCACGCGCAACTGAA 61.276 61.111 5.73 0.00 0.00 3.02
2401 2577 4.539083 ACACCCACGCGCAACTGA 62.539 61.111 5.73 0.00 0.00 3.41
2402 2578 4.012895 GACACCCACGCGCAACTG 62.013 66.667 5.73 0.00 0.00 3.16
2411 2587 4.269523 TGGCTGCTGGACACCCAC 62.270 66.667 0.00 0.00 37.58 4.61
2416 2592 4.624364 CGTGGTGGCTGCTGGACA 62.624 66.667 0.00 0.00 0.00 4.02
2425 2601 4.980805 TTGTCTCGGCGTGGTGGC 62.981 66.667 6.85 0.00 40.44 5.01
2426 2602 2.738521 CTTGTCTCGGCGTGGTGG 60.739 66.667 6.85 0.00 0.00 4.61
2427 2603 1.734477 CTCTTGTCTCGGCGTGGTG 60.734 63.158 6.85 0.00 0.00 4.17
2428 2604 2.651361 CTCTTGTCTCGGCGTGGT 59.349 61.111 6.85 0.00 0.00 4.16
2429 2605 2.125912 CCTCTTGTCTCGGCGTGG 60.126 66.667 6.85 1.09 0.00 4.94
2430 2606 2.811317 GCCTCTTGTCTCGGCGTG 60.811 66.667 6.85 4.24 33.64 5.34
2431 2607 3.288308 CTGCCTCTTGTCTCGGCGT 62.288 63.158 6.85 0.00 46.67 5.68
2432 2608 2.507992 CTGCCTCTTGTCTCGGCG 60.508 66.667 0.00 0.00 46.67 6.46
2433 2609 2.817396 GCTGCCTCTTGTCTCGGC 60.817 66.667 0.00 0.00 44.02 5.54
2434 2610 1.447489 CAGCTGCCTCTTGTCTCGG 60.447 63.158 0.00 0.00 0.00 4.63
2435 2611 0.735632 GTCAGCTGCCTCTTGTCTCG 60.736 60.000 9.47 0.00 0.00 4.04
2436 2612 0.735632 CGTCAGCTGCCTCTTGTCTC 60.736 60.000 9.47 0.00 0.00 3.36
2437 2613 1.291588 CGTCAGCTGCCTCTTGTCT 59.708 57.895 9.47 0.00 0.00 3.41
2438 2614 1.739562 CCGTCAGCTGCCTCTTGTC 60.740 63.158 9.47 0.00 0.00 3.18
2439 2615 1.758440 TTCCGTCAGCTGCCTCTTGT 61.758 55.000 9.47 0.00 0.00 3.16
2440 2616 1.004560 TTCCGTCAGCTGCCTCTTG 60.005 57.895 9.47 0.00 0.00 3.02
2441 2617 1.294780 CTTCCGTCAGCTGCCTCTT 59.705 57.895 9.47 0.00 0.00 2.85
2442 2618 2.977178 CTTCCGTCAGCTGCCTCT 59.023 61.111 9.47 0.00 0.00 3.69
2443 2619 2.817396 GCTTCCGTCAGCTGCCTC 60.817 66.667 9.47 0.96 36.79 4.70
2444 2620 4.749310 CGCTTCCGTCAGCTGCCT 62.749 66.667 9.47 0.00 37.68 4.75
2454 2630 1.801913 CTCGACTTGGACGCTTCCG 60.802 63.158 4.57 0.00 46.37 4.30
2455 2631 1.446272 CCTCGACTTGGACGCTTCC 60.446 63.158 1.37 1.37 43.19 3.46
2456 2632 0.456995 CTCCTCGACTTGGACGCTTC 60.457 60.000 0.00 0.00 0.00 3.86
2457 2633 1.587054 CTCCTCGACTTGGACGCTT 59.413 57.895 0.00 0.00 0.00 4.68
2458 2634 2.995872 GCTCCTCGACTTGGACGCT 61.996 63.158 6.46 0.00 0.00 5.07
2459 2635 2.507324 GCTCCTCGACTTGGACGC 60.507 66.667 0.00 0.00 0.00 5.19
2460 2636 2.182030 GGCTCCTCGACTTGGACG 59.818 66.667 0.00 0.00 0.00 4.79
2461 2637 1.216710 CTGGCTCCTCGACTTGGAC 59.783 63.158 0.00 0.00 0.00 4.02
2462 2638 1.984570 CCTGGCTCCTCGACTTGGA 60.985 63.158 0.00 0.00 0.00 3.53
2463 2639 2.232298 GACCTGGCTCCTCGACTTGG 62.232 65.000 0.00 0.00 0.00 3.61
2464 2640 1.216710 GACCTGGCTCCTCGACTTG 59.783 63.158 0.00 0.00 0.00 3.16
2465 2641 1.228894 TGACCTGGCTCCTCGACTT 60.229 57.895 0.00 0.00 0.00 3.01
2466 2642 1.680651 CTGACCTGGCTCCTCGACT 60.681 63.158 0.00 0.00 0.00 4.18
2467 2643 2.888863 CTGACCTGGCTCCTCGAC 59.111 66.667 0.00 0.00 0.00 4.20
2468 2644 3.071206 GCTGACCTGGCTCCTCGA 61.071 66.667 0.00 0.00 0.00 4.04
2469 2645 2.454832 TTTGCTGACCTGGCTCCTCG 62.455 60.000 0.00 0.00 0.00 4.63
2470 2646 0.250901 TTTTGCTGACCTGGCTCCTC 60.251 55.000 0.00 0.00 0.00 3.71
2471 2647 0.251077 CTTTTGCTGACCTGGCTCCT 60.251 55.000 0.00 0.00 0.00 3.69
2472 2648 0.250901 TCTTTTGCTGACCTGGCTCC 60.251 55.000 0.00 0.00 0.00 4.70
2473 2649 1.163554 CTCTTTTGCTGACCTGGCTC 58.836 55.000 0.00 0.00 0.00 4.70
2474 2650 0.475906 ACTCTTTTGCTGACCTGGCT 59.524 50.000 0.00 0.00 0.00 4.75
2475 2651 0.877743 GACTCTTTTGCTGACCTGGC 59.122 55.000 0.00 0.00 0.00 4.85
2476 2652 1.151668 CGACTCTTTTGCTGACCTGG 58.848 55.000 0.00 0.00 0.00 4.45
2477 2653 1.528586 CACGACTCTTTTGCTGACCTG 59.471 52.381 0.00 0.00 0.00 4.00
2478 2654 1.871080 CACGACTCTTTTGCTGACCT 58.129 50.000 0.00 0.00 0.00 3.85
2479 2655 0.235926 GCACGACTCTTTTGCTGACC 59.764 55.000 0.00 0.00 33.26 4.02
2480 2656 0.111089 CGCACGACTCTTTTGCTGAC 60.111 55.000 0.00 0.00 33.90 3.51
2481 2657 0.529773 ACGCACGACTCTTTTGCTGA 60.530 50.000 0.00 0.00 33.90 4.26
2482 2658 0.383491 CACGCACGACTCTTTTGCTG 60.383 55.000 0.00 0.00 33.90 4.41
2483 2659 1.498865 CCACGCACGACTCTTTTGCT 61.499 55.000 0.00 0.00 33.90 3.91
2484 2660 1.082756 CCACGCACGACTCTTTTGC 60.083 57.895 0.00 0.00 0.00 3.68
2485 2661 1.126846 GATCCACGCACGACTCTTTTG 59.873 52.381 0.00 0.00 0.00 2.44
2486 2662 1.000955 AGATCCACGCACGACTCTTTT 59.999 47.619 0.00 0.00 0.00 2.27
2487 2663 0.603569 AGATCCACGCACGACTCTTT 59.396 50.000 0.00 0.00 0.00 2.52
2488 2664 1.460504 TAGATCCACGCACGACTCTT 58.539 50.000 0.00 0.00 0.00 2.85
2489 2665 1.604755 GATAGATCCACGCACGACTCT 59.395 52.381 0.00 0.00 0.00 3.24
2490 2666 1.604755 AGATAGATCCACGCACGACTC 59.395 52.381 0.00 0.00 0.00 3.36
2491 2667 1.681538 AGATAGATCCACGCACGACT 58.318 50.000 0.00 0.00 0.00 4.18
2492 2668 2.548904 AGTAGATAGATCCACGCACGAC 59.451 50.000 0.00 0.00 0.00 4.34
2493 2669 2.806818 GAGTAGATAGATCCACGCACGA 59.193 50.000 0.00 0.00 0.00 4.35
2494 2670 2.095668 GGAGTAGATAGATCCACGCACG 60.096 54.545 0.00 0.00 33.08 5.34
2495 2671 3.150767 AGGAGTAGATAGATCCACGCAC 58.849 50.000 0.00 0.00 35.45 5.34
2496 2672 3.510531 AGGAGTAGATAGATCCACGCA 57.489 47.619 0.00 0.00 35.45 5.24
2497 2673 5.433526 AGATAGGAGTAGATAGATCCACGC 58.566 45.833 0.00 0.00 35.45 5.34
2498 2674 8.885722 GTTTAGATAGGAGTAGATAGATCCACG 58.114 40.741 0.00 0.00 35.45 4.94
2499 2675 9.969001 AGTTTAGATAGGAGTAGATAGATCCAC 57.031 37.037 0.00 0.00 35.45 4.02
2522 2698 3.872560 GCACGTGCAAACTTACTAGTT 57.127 42.857 34.52 0.00 46.44 2.24
3017 3206 1.077930 GCCTGCAGCTCCAAGATCA 60.078 57.895 8.66 0.00 38.99 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.