Multiple sequence alignment - TraesCS2B01G601400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G601400 chr2B 100.000 4877 0 0 1 4877 784272678 784277554 0.000000e+00 9007.0
1 TraesCS2B01G601400 chr2B 86.739 1478 156 25 844 2307 781801099 781802550 0.000000e+00 1607.0
2 TraesCS2B01G601400 chr2B 84.802 1566 186 30 764 2305 781790026 781791563 0.000000e+00 1526.0
3 TraesCS2B01G601400 chr2B 82.780 1475 177 36 2342 3767 781802549 781803995 0.000000e+00 1245.0
4 TraesCS2B01G601400 chr2B 86.071 840 93 8 2343 3182 781791565 781792380 0.000000e+00 881.0
5 TraesCS2B01G601400 chr2B 81.716 443 64 9 3217 3643 781792541 781792982 2.160000e-93 353.0
6 TraesCS2B01G601400 chr2B 84.354 147 18 3 3739 3881 781793264 781793409 6.580000e-29 139.0
7 TraesCS2B01G601400 chr2B 82.692 156 22 3 3739 3890 781804039 781804193 3.060000e-27 134.0
8 TraesCS2B01G601400 chrUn 94.054 4406 179 36 1 4355 31092613 31088240 0.000000e+00 6608.0
9 TraesCS2B01G601400 chrUn 84.255 1664 199 38 668 2307 31320506 31322130 0.000000e+00 1563.0
10 TraesCS2B01G601400 chrUn 86.417 1200 139 11 1115 2305 31306605 31307789 0.000000e+00 1291.0
11 TraesCS2B01G601400 chrUn 82.983 1475 174 36 2342 3767 31322129 31323575 0.000000e+00 1262.0
12 TraesCS2B01G601400 chrUn 86.993 838 85 8 2343 3180 31307791 31308604 0.000000e+00 922.0
13 TraesCS2B01G601400 chrUn 97.235 217 6 0 4588 4804 31087525 31087309 7.710000e-98 368.0
14 TraesCS2B01G601400 chrUn 81.330 466 70 11 3216 3668 31308757 31309218 3.590000e-96 363.0
15 TraesCS2B01G601400 chrUn 88.382 241 17 6 4354 4592 31088182 31087951 3.720000e-71 279.0
16 TraesCS2B01G601400 chrUn 82.867 286 36 6 876 1150 31306318 31306601 1.360000e-60 244.0
17 TraesCS2B01G601400 chrUn 83.974 156 20 3 3739 3890 31323619 31323773 1.410000e-30 145.0
18 TraesCS2B01G601400 chr2D 93.776 4322 204 23 312 4592 648351699 648355996 0.000000e+00 6431.0
19 TraesCS2B01G601400 chr2D 86.477 1479 165 17 833 2307 648115431 648113984 0.000000e+00 1591.0
20 TraesCS2B01G601400 chr2D 83.916 1660 195 44 668 2305 648126847 648125238 0.000000e+00 1520.0
21 TraesCS2B01G601400 chr2D 82.915 1475 175 37 2342 3767 648113985 648112539 0.000000e+00 1256.0
22 TraesCS2B01G601400 chr2D 86.516 838 89 8 2343 3180 648125236 648124423 0.000000e+00 900.0
23 TraesCS2B01G601400 chr2D 86.610 351 24 10 1 333 648351338 648351683 2.770000e-97 366.0
24 TraesCS2B01G601400 chr2D 80.645 465 73 8 3217 3668 648124269 648123809 1.300000e-90 344.0
25 TraesCS2B01G601400 chr2D 98.261 115 2 0 4690 4804 648356449 648356563 8.280000e-48 202.0
26 TraesCS2B01G601400 chr2D 83.974 156 20 3 3739 3890 648112495 648112341 1.410000e-30 145.0
27 TraesCS2B01G601400 chr2D 83.673 147 22 2 3739 3884 648123597 648123452 2.370000e-28 137.0
28 TraesCS2B01G601400 chr2D 100.000 28 0 0 4588 4615 648356422 648356449 9.000000e-03 52.8
29 TraesCS2B01G601400 chr7A 82.121 481 58 16 96 558 280226509 280226039 2.130000e-103 387.0
30 TraesCS2B01G601400 chr2A 86.100 259 21 6 312 558 110868059 110867804 1.040000e-66 265.0
31 TraesCS2B01G601400 chr2A 91.139 79 4 2 255 333 110868150 110868075 2.400000e-18 104.0
32 TraesCS2B01G601400 chr2A 94.643 56 3 0 570 625 110867763 110867708 2.420000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G601400 chr2B 784272678 784277554 4876 False 9007.000000 9007 100.000000 1 4877 1 chr2B.!!$F1 4876
1 TraesCS2B01G601400 chr2B 781801099 781804193 3094 False 995.333333 1607 84.070333 844 3890 3 chr2B.!!$F3 3046
2 TraesCS2B01G601400 chr2B 781790026 781793409 3383 False 724.750000 1526 84.235750 764 3881 4 chr2B.!!$F2 3117
3 TraesCS2B01G601400 chrUn 31087309 31092613 5304 True 2418.333333 6608 93.223667 1 4804 3 chrUn.!!$R1 4803
4 TraesCS2B01G601400 chrUn 31320506 31323773 3267 False 990.000000 1563 83.737333 668 3890 3 chrUn.!!$F2 3222
5 TraesCS2B01G601400 chrUn 31306318 31309218 2900 False 705.000000 1291 84.401750 876 3668 4 chrUn.!!$F1 2792
6 TraesCS2B01G601400 chr2D 648351338 648356563 5225 False 1762.950000 6431 94.661750 1 4804 4 chr2D.!!$F1 4803
7 TraesCS2B01G601400 chr2D 648112341 648115431 3090 True 997.333333 1591 84.455333 833 3890 3 chr2D.!!$R1 3057
8 TraesCS2B01G601400 chr2D 648123452 648126847 3395 True 725.250000 1520 83.687500 668 3884 4 chr2D.!!$R2 3216

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
617 713 0.118144 AGTGGAAGGGGAAGCTCTCT 59.882 55.000 0.00 0.00 0.00 3.10 F
646 742 1.227089 ATCTCTCGACGTGCATGGC 60.227 57.895 11.36 6.21 0.00 4.40 F
652 748 2.669569 GACGTGCATGGCCACACT 60.670 61.111 20.66 10.36 35.47 3.55 F
1503 2122 1.705997 AACGGGCACTGAGAAAGGGT 61.706 55.000 0.00 0.00 38.67 4.34 F
2059 2690 1.351017 TGCCCTCAAAGGAAATCGACT 59.649 47.619 0.00 0.00 37.67 4.18 F
3535 4310 0.539438 GTTCACATTGCCTGACCCCA 60.539 55.000 0.00 0.00 0.00 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1476 2095 0.320073 TCAGTGCCCGTTTTAGGACG 60.320 55.000 0.00 0.00 42.43 4.79 R
1503 2122 1.456296 CCTTGTGCTCATTGCTGCTA 58.544 50.000 0.00 0.00 43.37 3.49 R
2059 2690 2.099263 GGCTGACATACAAGCTACTCGA 59.901 50.000 0.00 0.00 0.00 4.04 R
2824 3455 1.065709 GTACCCATCCATGTGTTCGGT 60.066 52.381 0.00 0.00 0.00 4.69 R
3661 4469 0.811281 CCCTTCTCGGCAAATGAACC 59.189 55.000 0.00 0.00 0.00 3.62 R
4848 6375 1.064906 CATGGTCAGGTTCATGCTCCT 60.065 52.381 3.24 3.24 35.07 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 33 5.428457 TCTGGCCTTGGATCATTCTTACTAA 59.572 40.000 3.32 0.00 0.00 2.24
83 89 9.578576 TGGGGTACATAATTAGTACTACTAGTG 57.421 37.037 5.39 3.13 41.16 2.74
115 139 4.916983 AGTAGCTCTTGATCTGCACTAG 57.083 45.455 0.00 0.00 0.00 2.57
152 176 3.744942 GCTGCAGATGGTGTACAGATATG 59.255 47.826 20.43 0.25 0.00 1.78
163 187 4.991056 GTGTACAGATATGTATGGTGCAGG 59.009 45.833 3.07 0.00 0.00 4.85
164 188 3.131709 ACAGATATGTATGGTGCAGGC 57.868 47.619 0.00 0.00 0.00 4.85
195 219 8.143835 CCTTCTGAAATCACTTAAAACCACAAT 58.856 33.333 0.00 0.00 0.00 2.71
246 270 3.465871 GATTGCTCCTTTTGGTTTTGCA 58.534 40.909 0.00 0.00 41.38 4.08
249 273 2.027745 TGCTCCTTTTGGTTTTGCAACA 60.028 40.909 0.00 0.00 41.38 3.33
259 283 8.822652 TTTTGGTTTTGCAACAAATCAAATTT 57.177 23.077 18.35 0.00 38.37 1.82
292 316 5.239525 GGTATGGGTCAAGTCATTGCTTATC 59.760 44.000 0.00 0.00 36.30 1.75
293 317 4.299586 TGGGTCAAGTCATTGCTTATCA 57.700 40.909 0.00 0.00 36.30 2.15
294 318 4.858850 TGGGTCAAGTCATTGCTTATCAT 58.141 39.130 0.00 0.00 36.30 2.45
295 319 4.641541 TGGGTCAAGTCATTGCTTATCATG 59.358 41.667 0.00 0.00 36.30 3.07
356 426 6.867550 TGATGTGGATTAAGAGTGTAGACAG 58.132 40.000 0.00 0.00 0.00 3.51
382 452 0.794473 GTGCAACTTACACCGGCTAC 59.206 55.000 0.00 0.00 31.67 3.58
388 458 2.981898 ACTTACACCGGCTACAATTCC 58.018 47.619 0.00 0.00 0.00 3.01
434 504 2.295070 TCCTTTTCTTTTACAAGGCGCC 59.705 45.455 21.89 21.89 37.57 6.53
435 505 2.035321 CCTTTTCTTTTACAAGGCGCCA 59.965 45.455 31.54 4.11 30.94 5.69
456 526 0.874390 TGCTTTAGGTTTGCTGCTCG 59.126 50.000 0.00 0.00 0.00 5.03
492 562 6.749118 GTGTTAAGAACTGATGCCATTTCATC 59.251 38.462 0.00 0.00 42.33 2.92
502 572 4.642445 TGCCATTTCATCATAGTTGCAG 57.358 40.909 0.00 0.00 0.00 4.41
514 584 8.046708 TCATCATAGTTGCAGTAGTACCAAATT 58.953 33.333 0.00 0.00 0.00 1.82
526 596 6.951778 AGTAGTACCAAATTAAACAAGGCCAT 59.048 34.615 5.01 0.00 0.00 4.40
529 599 5.760484 ACCAAATTAAACAAGGCCATCAT 57.240 34.783 5.01 0.00 0.00 2.45
543 613 1.753073 CCATCATTGGAAGAAGTGGGC 59.247 52.381 0.00 0.00 46.92 5.36
616 712 1.867363 TAGTGGAAGGGGAAGCTCTC 58.133 55.000 0.00 0.00 0.00 3.20
617 713 0.118144 AGTGGAAGGGGAAGCTCTCT 59.882 55.000 0.00 0.00 0.00 3.10
645 741 1.485838 GCATCTCTCGACGTGCATGG 61.486 60.000 11.36 0.00 37.52 3.66
646 742 1.227089 ATCTCTCGACGTGCATGGC 60.227 57.895 11.36 6.21 0.00 4.40
648 744 3.647649 CTCTCGACGTGCATGGCCA 62.648 63.158 8.56 8.56 0.00 5.36
649 745 3.490759 CTCGACGTGCATGGCCAC 61.491 66.667 8.16 0.00 0.00 5.01
650 746 4.306967 TCGACGTGCATGGCCACA 62.307 61.111 8.16 0.00 35.47 4.17
652 748 2.669569 GACGTGCATGGCCACACT 60.670 61.111 20.66 10.36 35.47 3.55
733 834 6.734532 TGGGTCCAGTGATTACTTACTAGTA 58.265 40.000 0.00 0.00 34.07 1.82
784 885 2.871133 TGCGGATTAAGAGTGTACACG 58.129 47.619 19.93 6.37 36.20 4.49
824 925 6.865834 ACATGAGATTTCAAGGTCTCTACT 57.134 37.500 0.00 0.00 41.10 2.57
825 926 7.962995 ACATGAGATTTCAAGGTCTCTACTA 57.037 36.000 0.00 0.00 41.10 1.82
868 974 4.748277 TTACAAGGTCCAGGTGCTATAC 57.252 45.455 0.00 0.00 0.00 1.47
1137 1711 7.159372 ACGATGATGATGATGATGATGAAGAA 58.841 34.615 0.00 0.00 0.00 2.52
1364 1983 4.040217 GCCTCTCACTGATTCATACAGGAT 59.960 45.833 0.00 0.00 39.38 3.24
1463 2082 3.123621 GTGCAGACTATCAACAAGGAACG 59.876 47.826 0.00 0.00 0.00 3.95
1476 2095 7.581476 TCAACAAGGAACGAAATATGAAAGTC 58.419 34.615 0.00 0.00 0.00 3.01
1503 2122 1.705997 AACGGGCACTGAGAAAGGGT 61.706 55.000 0.00 0.00 38.67 4.34
1553 2172 7.447545 ACCAGTGATTGATGATATGGAAATGAG 59.552 37.037 0.00 0.00 0.00 2.90
1726 2345 2.432510 CTCTCCTCGCTTAAGGATGGTT 59.567 50.000 4.29 0.00 44.43 3.67
2002 2633 2.104963 GGACCTCCAACATCAGTATCCC 59.895 54.545 0.00 0.00 35.64 3.85
2004 2635 2.505819 ACCTCCAACATCAGTATCCCAC 59.494 50.000 0.00 0.00 0.00 4.61
2059 2690 1.351017 TGCCCTCAAAGGAAATCGACT 59.649 47.619 0.00 0.00 37.67 4.18
2247 2878 2.444388 AGCTCAGGCCATCATCCATTTA 59.556 45.455 5.01 0.00 39.73 1.40
2401 3032 2.182496 TGCAACATTCCTGCATCCG 58.818 52.632 0.00 0.00 44.67 4.18
2614 3245 1.471684 GAGTTGCAGGCCTTTCATCAG 59.528 52.381 0.00 0.00 0.00 2.90
2722 3353 3.055819 ACAGACCATGAACGCAGATAAGT 60.056 43.478 0.00 0.00 0.00 2.24
2824 3455 2.407616 CGTCAGCGATCACGGCTA 59.592 61.111 0.00 0.00 41.33 3.93
2924 3561 3.008330 CAGCAGAGCAAGCTTTATCACT 58.992 45.455 0.00 0.00 41.14 3.41
3027 3667 4.990288 GTCGAGCTTTTCCGACCT 57.010 55.556 13.17 0.00 46.54 3.85
3057 3697 4.708726 AATTGTGCAATCTAGGCTGTTC 57.291 40.909 0.00 0.00 0.00 3.18
3085 3725 1.452108 GGCATGGTCAGGTACAGCC 60.452 63.158 0.00 0.00 35.71 4.85
3515 4290 4.253257 GGCGCGTCTCTACTCCCG 62.253 72.222 8.43 0.00 0.00 5.14
3535 4310 0.539438 GTTCACATTGCCTGACCCCA 60.539 55.000 0.00 0.00 0.00 4.96
3661 4469 0.038159 GGAGGAATCTGTATCGGCCG 60.038 60.000 22.12 22.12 0.00 6.13
3672 4486 1.098712 TATCGGCCGGTTCATTTGCC 61.099 55.000 27.83 0.00 40.54 4.52
3719 4674 1.154016 ATGTCGCCGACAGTTCTCG 60.154 57.895 25.24 0.00 46.04 4.04
3773 4728 0.967380 GGTTTCAGTCCCCATGCTGG 60.967 60.000 0.00 0.00 37.25 4.85
3894 4933 1.571460 GCACCGTCTGCTTCTGTTG 59.429 57.895 0.00 0.00 43.33 3.33
4059 5098 8.398665 GTTCAAGTATCAGTTCAGTTCTGTTTT 58.601 33.333 0.00 0.00 34.86 2.43
4092 5131 8.601476 AGAGAGAGTTTACAGTTTGTTTTTACG 58.399 33.333 0.00 0.00 0.00 3.18
4095 5134 8.885302 AGAGTTTACAGTTTGTTTTTACGTTC 57.115 30.769 0.00 0.00 0.00 3.95
4189 5228 4.981794 ACAGTTTGTTGTACTGCAGTTTC 58.018 39.130 27.06 18.44 45.38 2.78
4192 5231 5.512788 CAGTTTGTTGTACTGCAGTTTCAAG 59.487 40.000 27.06 13.00 36.88 3.02
4208 5247 7.619982 GCAGTTTCAAGTTTTCAACTGAGTTTG 60.620 37.037 17.24 0.00 46.08 2.93
4259 5298 2.629137 TGCCTTGTTCATTCAGCATTGT 59.371 40.909 0.00 0.00 0.00 2.71
4281 5320 3.516300 TCATTCCAGCCCTCGTAAGTTTA 59.484 43.478 0.00 0.00 39.48 2.01
4283 5322 3.536956 TCCAGCCCTCGTAAGTTTATG 57.463 47.619 0.00 0.00 39.48 1.90
4286 5325 4.467082 TCCAGCCCTCGTAAGTTTATGTAA 59.533 41.667 0.00 0.00 39.48 2.41
4355 5394 6.391227 AAATGTCTTCTCAAACCAACGAAT 57.609 33.333 0.00 0.00 0.00 3.34
4356 5395 6.391227 AATGTCTTCTCAAACCAACGAATT 57.609 33.333 0.00 0.00 0.00 2.17
4357 5396 5.418310 TGTCTTCTCAAACCAACGAATTC 57.582 39.130 0.00 0.00 0.00 2.17
4360 5455 6.764085 TGTCTTCTCAAACCAACGAATTCTTA 59.236 34.615 3.52 0.00 0.00 2.10
4362 5457 7.958025 GTCTTCTCAAACCAACGAATTCTTATC 59.042 37.037 3.52 0.00 0.00 1.75
4366 5461 7.824289 TCTCAAACCAACGAATTCTTATCATCT 59.176 33.333 3.52 0.00 0.00 2.90
4367 5462 9.098355 CTCAAACCAACGAATTCTTATCATCTA 57.902 33.333 3.52 0.00 0.00 1.98
4401 5496 8.583296 CACTGTGAAGATTCATATCATCTAGGA 58.417 37.037 0.32 0.00 39.73 2.94
4425 5520 6.265577 AGAAAAAGTGAAGTGCAACACATAC 58.734 36.000 17.73 1.98 41.43 2.39
4475 5572 2.166254 ACAACAACCACAGGCTTTTCTG 59.834 45.455 0.00 0.00 40.40 3.02
4479 5576 2.624838 CAACCACAGGCTTTTCTGACAT 59.375 45.455 0.00 0.00 38.11 3.06
4480 5577 2.233271 ACCACAGGCTTTTCTGACATG 58.767 47.619 0.00 0.00 38.11 3.21
4523 5620 3.639099 CTTCTTCTGAAGGCAGGCA 57.361 52.632 16.83 0.00 44.33 4.75
4524 5621 1.451067 CTTCTTCTGAAGGCAGGCAG 58.549 55.000 16.83 0.00 44.33 4.85
4569 5666 1.753073 CATTCTCCCCTGCCAATCAAC 59.247 52.381 0.00 0.00 0.00 3.18
4621 6148 3.370527 CCATATCAACAAGGGAGGACGTT 60.371 47.826 0.00 0.00 0.00 3.99
4625 6152 2.967201 TCAACAAGGGAGGACGTTAGAA 59.033 45.455 0.00 0.00 0.00 2.10
4649 6176 1.542915 TGCAGCAAGATCTCCAAAAGC 59.457 47.619 0.00 0.00 0.00 3.51
4708 6235 3.423571 CCATACGTACGTCTTGAGTGAC 58.576 50.000 26.53 0.00 0.00 3.67
4804 6331 2.297701 GCCATACACGGACAATGGAAT 58.702 47.619 11.20 0.00 42.36 3.01
4805 6332 3.118223 TGCCATACACGGACAATGGAATA 60.118 43.478 11.20 0.00 42.36 1.75
4806 6333 4.072131 GCCATACACGGACAATGGAATAT 58.928 43.478 11.20 0.00 42.36 1.28
4807 6334 4.518970 GCCATACACGGACAATGGAATATT 59.481 41.667 11.20 0.00 42.36 1.28
4808 6335 5.009610 GCCATACACGGACAATGGAATATTT 59.990 40.000 11.20 0.00 42.36 1.40
4809 6336 6.460953 GCCATACACGGACAATGGAATATTTT 60.461 38.462 11.20 0.00 42.36 1.82
4810 6337 7.488322 CCATACACGGACAATGGAATATTTTT 58.512 34.615 3.09 0.00 42.36 1.94
4811 6338 8.625651 CCATACACGGACAATGGAATATTTTTA 58.374 33.333 3.09 0.00 42.36 1.52
4812 6339 9.663904 CATACACGGACAATGGAATATTTTTAG 57.336 33.333 0.00 0.00 0.00 1.85
4813 6340 7.095695 ACACGGACAATGGAATATTTTTAGG 57.904 36.000 0.00 0.00 0.00 2.69
4814 6341 6.887545 ACACGGACAATGGAATATTTTTAGGA 59.112 34.615 0.00 0.00 0.00 2.94
4815 6342 7.067008 ACACGGACAATGGAATATTTTTAGGAG 59.933 37.037 0.00 0.00 0.00 3.69
4816 6343 6.039382 ACGGACAATGGAATATTTTTAGGAGC 59.961 38.462 0.00 0.00 0.00 4.70
4817 6344 6.039270 CGGACAATGGAATATTTTTAGGAGCA 59.961 38.462 0.00 0.00 0.00 4.26
4818 6345 7.255590 CGGACAATGGAATATTTTTAGGAGCAT 60.256 37.037 0.00 0.00 0.00 3.79
4819 6346 7.869429 GGACAATGGAATATTTTTAGGAGCATG 59.131 37.037 0.00 0.00 0.00 4.06
4820 6347 8.537728 ACAATGGAATATTTTTAGGAGCATGA 57.462 30.769 0.00 0.00 0.00 3.07
4821 6348 8.980596 ACAATGGAATATTTTTAGGAGCATGAA 58.019 29.630 0.00 0.00 0.00 2.57
4822 6349 9.820725 CAATGGAATATTTTTAGGAGCATGAAA 57.179 29.630 0.00 0.00 0.00 2.69
4823 6350 9.822185 AATGGAATATTTTTAGGAGCATGAAAC 57.178 29.630 0.00 0.00 0.00 2.78
4824 6351 8.593945 TGGAATATTTTTAGGAGCATGAAACT 57.406 30.769 0.00 0.00 0.00 2.66
4825 6352 9.034800 TGGAATATTTTTAGGAGCATGAAACTT 57.965 29.630 0.00 0.00 0.00 2.66
4826 6353 9.305925 GGAATATTTTTAGGAGCATGAAACTTG 57.694 33.333 0.00 0.00 0.00 3.16
4827 6354 9.305925 GAATATTTTTAGGAGCATGAAACTTGG 57.694 33.333 0.00 0.00 0.00 3.61
4828 6355 4.519540 TTTTAGGAGCATGAAACTTGGC 57.480 40.909 0.00 0.00 0.00 4.52
4829 6356 2.877097 TAGGAGCATGAAACTTGGCA 57.123 45.000 0.00 0.00 0.00 4.92
4830 6357 1.999648 AGGAGCATGAAACTTGGCAA 58.000 45.000 0.00 0.00 0.00 4.52
4831 6358 1.891150 AGGAGCATGAAACTTGGCAAG 59.109 47.619 25.06 25.06 0.00 4.01
4832 6359 1.888512 GGAGCATGAAACTTGGCAAGA 59.111 47.619 32.50 11.54 0.00 3.02
4833 6360 2.297033 GGAGCATGAAACTTGGCAAGAA 59.703 45.455 32.50 15.22 0.00 2.52
4834 6361 3.311966 GAGCATGAAACTTGGCAAGAAC 58.688 45.455 32.50 21.02 0.00 3.01
4835 6362 2.694628 AGCATGAAACTTGGCAAGAACA 59.305 40.909 32.50 25.09 0.00 3.18
4836 6363 3.322828 AGCATGAAACTTGGCAAGAACAT 59.677 39.130 32.50 25.96 0.00 2.71
4837 6364 3.676646 GCATGAAACTTGGCAAGAACATC 59.323 43.478 32.50 21.76 0.00 3.06
4838 6365 4.796946 GCATGAAACTTGGCAAGAACATCA 60.797 41.667 32.50 25.68 0.00 3.07
4839 6366 4.998671 TGAAACTTGGCAAGAACATCAA 57.001 36.364 32.50 9.05 0.00 2.57
4840 6367 5.336150 TGAAACTTGGCAAGAACATCAAA 57.664 34.783 32.50 7.53 0.00 2.69
4841 6368 5.916318 TGAAACTTGGCAAGAACATCAAAT 58.084 33.333 32.50 4.78 0.00 2.32
4842 6369 7.048629 TGAAACTTGGCAAGAACATCAAATA 57.951 32.000 32.50 7.01 0.00 1.40
4843 6370 7.669427 TGAAACTTGGCAAGAACATCAAATAT 58.331 30.769 32.50 3.45 0.00 1.28
4844 6371 8.149647 TGAAACTTGGCAAGAACATCAAATATT 58.850 29.630 32.50 9.62 0.00 1.28
4845 6372 8.907222 AAACTTGGCAAGAACATCAAATATTT 57.093 26.923 32.50 14.79 0.00 1.40
4846 6373 8.907222 AACTTGGCAAGAACATCAAATATTTT 57.093 26.923 32.50 8.99 0.00 1.82
4847 6374 8.907222 ACTTGGCAAGAACATCAAATATTTTT 57.093 26.923 32.50 1.68 0.00 1.94
4848 6375 9.995003 ACTTGGCAAGAACATCAAATATTTTTA 57.005 25.926 32.50 0.00 0.00 1.52
4850 6377 9.434420 TTGGCAAGAACATCAAATATTTTTAGG 57.566 29.630 0.00 0.00 0.00 2.69
4851 6378 8.811017 TGGCAAGAACATCAAATATTTTTAGGA 58.189 29.630 0.00 0.00 0.00 2.94
4852 6379 9.305925 GGCAAGAACATCAAATATTTTTAGGAG 57.694 33.333 0.00 0.00 0.00 3.69
4853 6380 8.811378 GCAAGAACATCAAATATTTTTAGGAGC 58.189 33.333 0.00 0.00 0.00 4.70
4854 6381 9.859427 CAAGAACATCAAATATTTTTAGGAGCA 57.141 29.630 0.00 0.00 0.00 4.26
4859 6386 9.807649 ACATCAAATATTTTTAGGAGCATGAAC 57.192 29.630 0.00 0.00 0.00 3.18
4860 6387 9.252962 CATCAAATATTTTTAGGAGCATGAACC 57.747 33.333 0.00 0.00 0.00 3.62
4861 6388 8.593945 TCAAATATTTTTAGGAGCATGAACCT 57.406 30.769 13.98 13.98 39.95 3.50
4862 6389 8.469200 TCAAATATTTTTAGGAGCATGAACCTG 58.531 33.333 17.53 2.58 37.68 4.00
4863 6390 8.469200 CAAATATTTTTAGGAGCATGAACCTGA 58.531 33.333 17.53 9.39 37.68 3.86
4864 6391 5.904362 ATTTTTAGGAGCATGAACCTGAC 57.096 39.130 17.53 0.00 37.68 3.51
4865 6392 3.350219 TTTAGGAGCATGAACCTGACC 57.650 47.619 17.53 0.00 37.68 4.02
4866 6393 1.951209 TAGGAGCATGAACCTGACCA 58.049 50.000 17.53 0.00 37.68 4.02
4867 6394 1.293062 AGGAGCATGAACCTGACCAT 58.707 50.000 9.75 0.00 34.99 3.55
4868 6395 1.064906 AGGAGCATGAACCTGACCATG 60.065 52.381 9.75 0.00 42.13 3.66
4869 6396 1.340405 GGAGCATGAACCTGACCATGT 60.340 52.381 0.00 0.00 41.49 3.21
4870 6397 2.440409 GAGCATGAACCTGACCATGTT 58.560 47.619 0.00 0.00 41.49 2.71
4871 6398 3.609853 GAGCATGAACCTGACCATGTTA 58.390 45.455 0.00 0.00 41.49 2.41
4872 6399 4.009675 GAGCATGAACCTGACCATGTTAA 58.990 43.478 0.00 0.00 41.49 2.01
4873 6400 4.406456 AGCATGAACCTGACCATGTTAAA 58.594 39.130 0.00 0.00 41.49 1.52
4874 6401 5.018809 AGCATGAACCTGACCATGTTAAAT 58.981 37.500 0.00 0.00 41.49 1.40
4875 6402 5.104374 GCATGAACCTGACCATGTTAAATG 58.896 41.667 0.00 0.00 41.49 2.32
4876 6403 5.653507 CATGAACCTGACCATGTTAAATGG 58.346 41.667 0.00 0.00 44.54 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 9.626045 GCAGCTTTTTGTAACATTAGTAAGAAT 57.374 29.630 0.00 0.00 0.00 2.40
27 33 5.697633 CCAAATCTGCAGCTTTTTGTAACAT 59.302 36.000 23.25 3.91 0.00 2.71
39 45 1.005294 CAACGCACCAAATCTGCAGC 61.005 55.000 9.47 0.00 34.00 5.25
83 89 6.488683 AGATCAAGAGCTACTACATCCTACAC 59.511 42.308 0.00 0.00 0.00 2.90
85 91 6.569610 GCAGATCAAGAGCTACTACATCCTAC 60.570 46.154 0.00 0.00 0.00 3.18
94 100 4.531854 TCTAGTGCAGATCAAGAGCTACT 58.468 43.478 0.00 3.40 0.00 2.57
115 139 0.810823 GCAGCAGAGCAGAGGTGATC 60.811 60.000 5.80 0.00 39.56 2.92
139 163 4.956085 TGCACCATACATATCTGTACACC 58.044 43.478 0.00 0.00 40.57 4.16
163 187 2.157738 AGTGATTTCAGAAGGTGCTGC 58.842 47.619 0.00 0.00 35.86 5.25
164 188 5.947228 TTAAGTGATTTCAGAAGGTGCTG 57.053 39.130 0.00 0.00 37.24 4.41
230 254 5.353678 TGATTTGTTGCAAAACCAAAAGGAG 59.646 36.000 15.16 0.00 0.00 3.69
246 270 7.155655 ACCAAGTTGCAAAATTTGATTTGTT 57.844 28.000 10.26 0.00 41.34 2.83
249 273 7.040548 CCCATACCAAGTTGCAAAATTTGATTT 60.041 33.333 10.26 7.09 27.89 2.17
259 283 2.666272 TGACCCATACCAAGTTGCAA 57.334 45.000 0.00 0.00 0.00 4.08
292 316 8.599055 ATGTGCTGTCTACACTAATAATCATG 57.401 34.615 0.00 0.00 38.86 3.07
293 317 9.049523 CAATGTGCTGTCTACACTAATAATCAT 57.950 33.333 0.00 0.00 38.86 2.45
294 318 8.040727 ACAATGTGCTGTCTACACTAATAATCA 58.959 33.333 0.00 0.00 38.86 2.57
295 319 8.331022 CACAATGTGCTGTCTACACTAATAATC 58.669 37.037 0.00 0.00 38.86 1.75
376 446 3.252974 AGAGACTTGGAATTGTAGCCG 57.747 47.619 0.00 0.00 0.00 5.52
382 452 4.764172 CTCCCAGTAGAGACTTGGAATTG 58.236 47.826 0.20 0.00 44.71 2.32
388 458 1.895798 TGTGCTCCCAGTAGAGACTTG 59.104 52.381 0.00 0.00 35.82 3.16
434 504 1.610522 AGCAGCAAACCTAAAGCACTG 59.389 47.619 0.00 0.00 0.00 3.66
435 505 1.882623 GAGCAGCAAACCTAAAGCACT 59.117 47.619 0.00 0.00 0.00 4.40
492 562 9.769093 GTTTAATTTGGTACTACTGCAACTATG 57.231 33.333 0.00 0.00 0.00 2.23
493 563 9.509956 TGTTTAATTTGGTACTACTGCAACTAT 57.490 29.630 0.00 0.00 0.00 2.12
494 564 8.905660 TGTTTAATTTGGTACTACTGCAACTA 57.094 30.769 0.00 0.00 0.00 2.24
502 572 6.578163 TGGCCTTGTTTAATTTGGTACTAC 57.422 37.500 3.32 0.00 0.00 2.73
526 596 0.960364 GCGCCCACTTCTTCCAATGA 60.960 55.000 0.00 0.00 0.00 2.57
529 599 1.302511 GAGCGCCCACTTCTTCCAA 60.303 57.895 2.29 0.00 0.00 3.53
562 632 0.670162 AACAGTTGGCACTCACATGC 59.330 50.000 0.00 0.00 45.34 4.06
564 634 3.149196 CCTAAACAGTTGGCACTCACAT 58.851 45.455 0.00 0.00 0.00 3.21
565 635 2.092646 ACCTAAACAGTTGGCACTCACA 60.093 45.455 0.00 0.00 0.00 3.58
605 701 2.264120 GAGCCCAAGAGAGCTTCCCC 62.264 65.000 0.00 0.00 40.11 4.81
606 702 1.223211 GAGCCCAAGAGAGCTTCCC 59.777 63.158 0.00 0.00 40.11 3.97
609 705 1.299321 GCAGAGCCCAAGAGAGCTT 59.701 57.895 0.00 0.00 40.11 3.74
616 712 0.530211 CGAGAGATGCAGAGCCCAAG 60.530 60.000 0.00 0.00 0.00 3.61
617 713 0.972471 TCGAGAGATGCAGAGCCCAA 60.972 55.000 0.00 0.00 33.31 4.12
645 741 4.142315 ACTTGCATAATCAATCAGTGTGGC 60.142 41.667 0.00 0.00 0.00 5.01
646 742 5.571784 ACTTGCATAATCAATCAGTGTGG 57.428 39.130 0.00 0.00 0.00 4.17
648 744 5.948162 AGGAACTTGCATAATCAATCAGTGT 59.052 36.000 0.00 0.00 27.25 3.55
649 745 6.446781 AGGAACTTGCATAATCAATCAGTG 57.553 37.500 0.00 0.00 27.25 3.66
733 834 5.709631 TCACACAATGTGTTGCATACCTTAT 59.290 36.000 17.31 0.00 45.08 1.73
784 885 1.428448 TGTAAGCTGCACGACATGTC 58.572 50.000 16.21 16.21 0.00 3.06
858 964 1.182667 TCAGCACACGTATAGCACCT 58.817 50.000 8.46 0.00 0.00 4.00
868 974 3.375642 AGTATCGAATGATCAGCACACG 58.624 45.455 0.09 2.80 35.99 4.49
1137 1711 2.760650 TGGCTCACTATCATTGTCGTCT 59.239 45.455 0.00 0.00 0.00 4.18
1364 1983 2.975732 CTCCACTTCATAGAGCTGCA 57.024 50.000 1.02 0.00 0.00 4.41
1463 2082 7.178074 CCGTTTTAGGACGACTTTCATATTTC 58.822 38.462 0.00 0.00 45.47 2.17
1476 2095 0.320073 TCAGTGCCCGTTTTAGGACG 60.320 55.000 0.00 0.00 42.43 4.79
1503 2122 1.456296 CCTTGTGCTCATTGCTGCTA 58.544 50.000 0.00 0.00 43.37 3.49
1553 2172 3.756963 AGATAAAGGTTTCTTCAACGGCC 59.243 43.478 0.00 0.00 36.05 6.13
1643 2262 7.425606 GTCATCAAACTGAGCTTTCCTTTTTA 58.574 34.615 0.00 0.00 0.00 1.52
1644 2263 6.276091 GTCATCAAACTGAGCTTTCCTTTTT 58.724 36.000 0.00 0.00 0.00 1.94
1699 2318 5.045012 TCCTTAAGCGAGGAGAGTATGTA 57.955 43.478 0.00 0.00 40.87 2.29
1726 2345 2.346766 TCCACTTCTTTCAGCTTGCA 57.653 45.000 0.00 0.00 0.00 4.08
2002 2633 2.559668 ACACAGATTGCTTTGATGGGTG 59.440 45.455 0.00 0.00 0.00 4.61
2004 2635 2.821378 TGACACAGATTGCTTTGATGGG 59.179 45.455 0.00 0.00 0.00 4.00
2059 2690 2.099263 GGCTGACATACAAGCTACTCGA 59.901 50.000 0.00 0.00 0.00 4.04
2247 2878 4.184649 ACCCTCAACAAGAACTCCATTT 57.815 40.909 0.00 0.00 0.00 2.32
2401 3032 7.905031 GCTCAATCAGCTTATTTGTATCAAC 57.095 36.000 0.00 0.00 45.83 3.18
2722 3353 1.135333 GGGCACGAAAAGTTCAACCAA 59.865 47.619 0.00 0.00 0.00 3.67
2824 3455 1.065709 GTACCCATCCATGTGTTCGGT 60.066 52.381 0.00 0.00 0.00 4.69
2941 3581 4.305989 TGGCCATATCAATTTCTTTCGC 57.694 40.909 0.00 0.00 0.00 4.70
3027 3667 6.222389 CCTAGATTGCACAATTTGTCCAAAA 58.778 36.000 9.80 0.00 33.56 2.44
3085 3725 1.089920 GCAGTAGCACATGAAGGGTG 58.910 55.000 0.00 0.00 41.58 4.61
3443 4218 3.149981 GCTATTCTAACCCCCAAGATGC 58.850 50.000 0.00 0.00 0.00 3.91
3515 4290 2.267045 GGGTCAGGCAATGTGAACC 58.733 57.895 0.00 0.00 44.50 3.62
3535 4310 2.515996 ATTCCAACCGCCATCGTCGT 62.516 55.000 0.00 0.00 0.00 4.34
3564 4339 4.799586 GCACAATAGTATGGCCAGTACGAT 60.800 45.833 13.05 12.40 0.00 3.73
3661 4469 0.811281 CCCTTCTCGGCAAATGAACC 59.189 55.000 0.00 0.00 0.00 3.62
3672 4486 2.802816 CACAGAAGAACAACCCTTCTCG 59.197 50.000 0.00 0.00 46.05 4.04
3719 4674 1.251251 ACCTGCTGAAGAATGTTGCC 58.749 50.000 0.00 0.00 0.00 4.52
3773 4728 1.526225 GCGGTATCCTTCTTGGGGC 60.526 63.158 0.00 0.00 36.20 5.80
3892 4931 9.734620 GCAATATAAAATACACTGAAGCATCAA 57.265 29.630 0.00 0.00 34.49 2.57
3894 4933 9.956720 AAGCAATATAAAATACACTGAAGCATC 57.043 29.630 0.00 0.00 0.00 3.91
3958 4997 7.946776 TCAAAGTCTACCACTTAAGTACCTAGT 59.053 37.037 8.04 4.04 45.32 2.57
4092 5131 2.851798 CTCTGGCCAAGAGCAGAAC 58.148 57.895 7.01 0.00 45.93 3.01
4259 5298 1.568504 ACTTACGAGGGCTGGAATGA 58.431 50.000 0.00 0.00 0.00 2.57
4281 5320 7.466746 AAGATTGTTTGCCTACATGTTACAT 57.533 32.000 2.30 0.00 0.00 2.29
4283 5322 8.587952 AAAAAGATTGTTTGCCTACATGTTAC 57.412 30.769 2.30 0.00 0.00 2.50
4355 5394 7.013750 CACAGTGCTCCTAGTAGATGATAAGAA 59.986 40.741 0.00 0.00 0.00 2.52
4356 5395 6.488344 CACAGTGCTCCTAGTAGATGATAAGA 59.512 42.308 0.00 0.00 0.00 2.10
4357 5396 6.488344 TCACAGTGCTCCTAGTAGATGATAAG 59.512 42.308 0.00 0.00 0.00 1.73
4360 5455 4.797743 TCACAGTGCTCCTAGTAGATGAT 58.202 43.478 0.00 0.00 0.00 2.45
4362 5457 4.642437 TCTTCACAGTGCTCCTAGTAGATG 59.358 45.833 0.00 0.00 0.00 2.90
4366 5461 5.016831 TGAATCTTCACAGTGCTCCTAGTA 58.983 41.667 0.00 0.00 31.01 1.82
4367 5462 3.834813 TGAATCTTCACAGTGCTCCTAGT 59.165 43.478 0.00 0.00 31.01 2.57
4401 5496 4.782019 TGTGTTGCACTTCACTTTTTCT 57.218 36.364 14.15 0.00 35.11 2.52
4406 5501 3.003689 GCAGTATGTGTTGCACTTCACTT 59.996 43.478 14.15 11.23 40.02 3.16
4407 5502 2.549754 GCAGTATGTGTTGCACTTCACT 59.450 45.455 14.15 0.00 40.02 3.41
4409 5504 1.879380 GGCAGTATGTGTTGCACTTCA 59.121 47.619 0.00 0.00 42.02 3.02
4410 5505 1.879380 TGGCAGTATGTGTTGCACTTC 59.121 47.619 0.00 0.00 42.02 3.01
4411 5506 1.979855 TGGCAGTATGTGTTGCACTT 58.020 45.000 0.00 0.00 42.02 3.16
4475 5572 5.953183 TGAAGCAATAACACAATCCATGTC 58.047 37.500 0.00 0.00 41.46 3.06
4479 5576 4.218200 CACCTGAAGCAATAACACAATCCA 59.782 41.667 0.00 0.00 0.00 3.41
4480 5577 4.380867 CCACCTGAAGCAATAACACAATCC 60.381 45.833 0.00 0.00 0.00 3.01
4539 5636 1.691219 GGGAGAATGGGCTTCCACA 59.309 57.895 0.00 0.00 44.44 4.17
4542 5639 1.228510 CAGGGGAGAATGGGCTTCC 59.771 63.158 0.00 0.00 34.11 3.46
4569 5666 3.940209 TGCTTCCTTGGTTATGCTTTG 57.060 42.857 0.00 0.00 0.00 2.77
4621 6148 5.255687 TGGAGATCTTGCTGCATTTTTCTA 58.744 37.500 1.84 0.00 30.90 2.10
4625 6152 4.877378 TTTGGAGATCTTGCTGCATTTT 57.123 36.364 1.84 0.00 36.10 1.82
4649 6176 9.855361 CTAGTGTATTAATTTGCTCTTCATTCG 57.145 33.333 0.00 0.00 0.00 3.34
4708 6235 3.426695 CGATAGCAGCAACTCCCAAAAAG 60.427 47.826 0.00 0.00 0.00 2.27
4804 6331 6.210385 TGCCAAGTTTCATGCTCCTAAAAATA 59.790 34.615 0.00 0.00 0.00 1.40
4805 6332 5.011943 TGCCAAGTTTCATGCTCCTAAAAAT 59.988 36.000 0.00 0.00 0.00 1.82
4806 6333 4.343526 TGCCAAGTTTCATGCTCCTAAAAA 59.656 37.500 0.00 0.00 0.00 1.94
4807 6334 3.894427 TGCCAAGTTTCATGCTCCTAAAA 59.106 39.130 0.00 0.00 0.00 1.52
4808 6335 3.495331 TGCCAAGTTTCATGCTCCTAAA 58.505 40.909 0.00 0.00 0.00 1.85
4809 6336 3.153369 TGCCAAGTTTCATGCTCCTAA 57.847 42.857 0.00 0.00 0.00 2.69
4810 6337 2.877097 TGCCAAGTTTCATGCTCCTA 57.123 45.000 0.00 0.00 0.00 2.94
4811 6338 1.891150 CTTGCCAAGTTTCATGCTCCT 59.109 47.619 0.00 0.00 0.00 3.69
4812 6339 1.888512 TCTTGCCAAGTTTCATGCTCC 59.111 47.619 4.04 0.00 0.00 4.70
4813 6340 3.243501 TGTTCTTGCCAAGTTTCATGCTC 60.244 43.478 4.04 0.00 0.00 4.26
4814 6341 2.694628 TGTTCTTGCCAAGTTTCATGCT 59.305 40.909 4.04 0.00 0.00 3.79
4815 6342 3.096489 TGTTCTTGCCAAGTTTCATGC 57.904 42.857 4.04 0.00 0.00 4.06
4816 6343 4.873817 TGATGTTCTTGCCAAGTTTCATG 58.126 39.130 4.04 0.00 0.00 3.07
4817 6344 5.534207 TTGATGTTCTTGCCAAGTTTCAT 57.466 34.783 4.04 7.70 0.00 2.57
4818 6345 4.998671 TTGATGTTCTTGCCAAGTTTCA 57.001 36.364 4.04 3.30 0.00 2.69
4819 6346 8.538409 AATATTTGATGTTCTTGCCAAGTTTC 57.462 30.769 4.04 0.00 0.00 2.78
4820 6347 8.907222 AAATATTTGATGTTCTTGCCAAGTTT 57.093 26.923 4.04 0.00 0.00 2.66
4821 6348 8.907222 AAAATATTTGATGTTCTTGCCAAGTT 57.093 26.923 4.04 0.00 0.00 2.66
4822 6349 8.907222 AAAAATATTTGATGTTCTTGCCAAGT 57.093 26.923 4.04 0.00 0.00 3.16
4824 6351 9.434420 CCTAAAAATATTTGATGTTCTTGCCAA 57.566 29.630 0.39 0.00 0.00 4.52
4825 6352 8.811017 TCCTAAAAATATTTGATGTTCTTGCCA 58.189 29.630 0.39 0.00 0.00 4.92
4826 6353 9.305925 CTCCTAAAAATATTTGATGTTCTTGCC 57.694 33.333 0.39 0.00 0.00 4.52
4827 6354 8.811378 GCTCCTAAAAATATTTGATGTTCTTGC 58.189 33.333 0.39 0.00 0.00 4.01
4828 6355 9.859427 TGCTCCTAAAAATATTTGATGTTCTTG 57.141 29.630 0.39 0.00 0.00 3.02
4833 6360 9.807649 GTTCATGCTCCTAAAAATATTTGATGT 57.192 29.630 0.39 0.00 0.00 3.06
4834 6361 9.252962 GGTTCATGCTCCTAAAAATATTTGATG 57.747 33.333 0.39 0.00 0.00 3.07
4835 6362 9.205513 AGGTTCATGCTCCTAAAAATATTTGAT 57.794 29.630 0.39 0.00 31.66 2.57
4836 6363 8.469200 CAGGTTCATGCTCCTAAAAATATTTGA 58.531 33.333 0.39 0.00 32.26 2.69
4837 6364 8.469200 TCAGGTTCATGCTCCTAAAAATATTTG 58.531 33.333 0.39 0.00 32.26 2.32
4838 6365 8.470002 GTCAGGTTCATGCTCCTAAAAATATTT 58.530 33.333 7.92 0.00 32.26 1.40
4839 6366 7.068716 GGTCAGGTTCATGCTCCTAAAAATATT 59.931 37.037 7.92 0.00 32.26 1.28
4840 6367 6.547510 GGTCAGGTTCATGCTCCTAAAAATAT 59.452 38.462 7.92 0.00 32.26 1.28
4841 6368 5.885912 GGTCAGGTTCATGCTCCTAAAAATA 59.114 40.000 7.92 0.00 32.26 1.40
4842 6369 4.706962 GGTCAGGTTCATGCTCCTAAAAAT 59.293 41.667 7.92 0.00 32.26 1.82
4843 6370 4.079253 GGTCAGGTTCATGCTCCTAAAAA 58.921 43.478 7.92 0.00 32.26 1.94
4844 6371 3.073798 TGGTCAGGTTCATGCTCCTAAAA 59.926 43.478 7.92 0.00 32.26 1.52
4845 6372 2.642311 TGGTCAGGTTCATGCTCCTAAA 59.358 45.455 7.92 0.00 32.26 1.85
4846 6373 2.265367 TGGTCAGGTTCATGCTCCTAA 58.735 47.619 7.92 0.00 32.26 2.69
4847 6374 1.951209 TGGTCAGGTTCATGCTCCTA 58.049 50.000 7.92 0.00 32.26 2.94
4848 6375 1.064906 CATGGTCAGGTTCATGCTCCT 60.065 52.381 3.24 3.24 35.07 3.69
4849 6376 1.340405 ACATGGTCAGGTTCATGCTCC 60.340 52.381 0.00 0.00 43.12 4.70
4850 6377 2.119801 ACATGGTCAGGTTCATGCTC 57.880 50.000 0.00 0.00 43.12 4.26
4851 6378 2.592102 AACATGGTCAGGTTCATGCT 57.408 45.000 0.00 0.00 43.12 3.79
4852 6379 4.782019 TTTAACATGGTCAGGTTCATGC 57.218 40.909 4.23 0.00 43.12 4.06
4853 6380 5.653507 CCATTTAACATGGTCAGGTTCATG 58.346 41.667 4.23 8.39 44.42 3.07
4854 6381 5.920193 CCATTTAACATGGTCAGGTTCAT 57.080 39.130 4.23 0.00 36.63 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.