Multiple sequence alignment - TraesCS2B01G599600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G599600 chr2B 100.000 5641 0 0 1 5641 782148899 782154539 0.000000e+00 10418.0
1 TraesCS2B01G599600 chr2B 100.000 352 0 0 5919 6270 782154817 782155168 0.000000e+00 651.0
2 TraesCS2B01G599600 chr2B 90.878 296 14 8 691 985 129747984 129747701 9.860000e-103 385.0
3 TraesCS2B01G599600 chr2D 92.969 5277 179 92 2 5141 648209515 648214736 0.000000e+00 7513.0
4 TraesCS2B01G599600 chr2D 89.670 455 25 11 5179 5621 648214735 648215179 1.530000e-155 560.0
5 TraesCS2B01G599600 chr2D 86.131 274 27 2 5924 6186 648235657 648235930 1.030000e-72 285.0
6 TraesCS2B01G599600 chrUn 93.073 3537 183 40 2 3497 31216916 31213401 0.000000e+00 5118.0
7 TraesCS2B01G599600 chrUn 91.214 2174 97 41 3495 5621 31213370 31211244 0.000000e+00 2870.0
8 TraesCS2B01G599600 chr5B 90.541 296 16 7 691 985 619716737 619716453 1.280000e-101 381.0
9 TraesCS2B01G599600 chr5B 89.865 296 18 6 691 985 47428425 47428709 2.760000e-98 370.0
10 TraesCS2B01G599600 chr5B 89.527 296 19 7 691 985 7766469 7766185 1.280000e-96 364.0
11 TraesCS2B01G599600 chr5B 79.401 267 39 10 5928 6179 120574349 120574614 2.320000e-39 174.0
12 TraesCS2B01G599600 chr5A 89.865 296 18 6 691 985 455891879 455891595 2.760000e-98 370.0
13 TraesCS2B01G599600 chr7B 89.527 296 19 6 691 985 113520402 113520118 1.280000e-96 364.0
14 TraesCS2B01G599600 chr7B 83.333 270 26 13 5928 6182 327460110 327459845 1.360000e-56 231.0
15 TraesCS2B01G599600 chr7B 86.747 166 12 2 5924 6079 577302758 577302923 6.460000e-40 176.0
16 TraesCS2B01G599600 chr7B 88.506 87 7 3 5028 5113 713284363 713284279 1.110000e-17 102.0
17 TraesCS2B01G599600 chr5D 83.521 267 31 5 5929 6183 556557612 556557877 2.920000e-58 237.0
18 TraesCS2B01G599600 chr5D 85.279 197 17 4 5923 6107 240845914 240845718 6.410000e-45 193.0
19 TraesCS2B01G599600 chr4A 83.026 271 31 8 5924 6181 743493047 743493315 1.360000e-56 231.0
20 TraesCS2B01G599600 chr3B 82.545 275 36 7 5924 6186 66599974 66599700 1.360000e-56 231.0
21 TraesCS2B01G599600 chr4B 84.979 233 24 2 5924 6146 391542564 391542795 6.320000e-55 226.0
22 TraesCS2B01G599600 chr4B 87.500 88 8 3 5027 5113 22846396 22846481 1.440000e-16 99.0
23 TraesCS2B01G599600 chr4B 86.364 88 10 2 5027 5114 563210525 563210610 1.860000e-15 95.3
24 TraesCS2B01G599600 chr6B 81.985 272 32 7 5928 6186 68415980 68415713 1.370000e-51 215.0
25 TraesCS2B01G599600 chr6B 78.509 228 34 9 5938 6150 291046458 291046685 1.100000e-27 135.0
26 TraesCS2B01G599600 chr7D 78.930 299 43 13 5928 6211 4588052 4588345 1.070000e-42 185.0
27 TraesCS2B01G599600 chr7D 80.000 145 25 4 6027 6168 458721928 458721785 3.090000e-18 104.0
28 TraesCS2B01G599600 chr7D 87.356 87 8 3 5028 5113 618868834 618868750 5.170000e-16 97.1
29 TraesCS2B01G599600 chr6A 81.461 178 20 9 5924 6091 220701080 220701254 3.940000e-27 134.0
30 TraesCS2B01G599600 chr6A 84.043 94 13 2 5028 5120 609314535 609314443 8.660000e-14 89.8
31 TraesCS2B01G599600 chr1A 79.897 194 26 6 5956 6137 584083446 584083254 5.100000e-26 130.0
32 TraesCS2B01G599600 chr2A 81.325 166 24 2 6024 6182 15226910 15227075 1.830000e-25 128.0
33 TraesCS2B01G599600 chr2A 85.714 91 10 3 5026 5116 569191392 569191479 6.690000e-15 93.5
34 TraesCS2B01G599600 chr6D 75.646 271 50 14 5924 6181 161344734 161345001 3.070000e-23 121.0
35 TraesCS2B01G599600 chr3D 87.059 85 10 1 5029 5113 450461829 450461746 1.860000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G599600 chr2B 782148899 782155168 6269 False 5534.5 10418 100.0000 1 6270 2 chr2B.!!$F1 6269
1 TraesCS2B01G599600 chr2D 648209515 648215179 5664 False 4036.5 7513 91.3195 2 5621 2 chr2D.!!$F2 5619
2 TraesCS2B01G599600 chrUn 31211244 31216916 5672 True 3994.0 5118 92.1435 2 5621 2 chrUn.!!$R1 5619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
515 578 0.036732 TGTGAGATGTGGCCTGGTTC 59.963 55.0 3.32 0.0 0.00 3.62 F
1357 1450 0.037734 GCGGGAAAGGGAGAAGGAAA 59.962 55.0 0.00 0.0 0.00 3.13 F
2420 2516 0.038744 AAGCTTACAGGGCTGCACAT 59.961 50.0 4.01 0.0 40.19 3.21 F
2794 2892 0.243636 GGGACAACCTGAAAATGCCG 59.756 55.0 0.00 0.0 35.85 5.69 F
3932 4064 0.182061 CTGCATGCTGTCCTACCCAT 59.818 55.0 20.33 0.0 0.00 4.00 F
3942 4074 0.716591 TCCTACCCATCCTCACACCT 59.283 55.0 0.00 0.0 0.00 4.00 F
4994 5171 0.869730 GCTCGGCGACAAAAAGGTAA 59.130 50.0 4.99 0.0 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1499 1592 0.252467 CTCTCCTGGGAGGTCACCTT 60.252 60.000 15.66 0.0 42.20 3.50 R
3354 3452 0.663688 CAGCATCTGCATCTCCTTGC 59.336 55.000 4.79 0.0 45.16 4.01 R
3932 4064 0.836400 GGAAGACCCAGGTGTGAGGA 60.836 60.000 0.00 0.0 34.14 3.71 R
4576 4728 2.877335 CGTAGCACCCTAAAGTGAGTC 58.123 52.381 0.00 0.0 40.34 3.36 R
4841 5002 1.075305 TGCAGGAAGGCATTGCAGA 59.925 52.632 11.39 0.0 42.41 4.26 R
5266 5444 1.597854 CACTCCGCTGCAACCTCAA 60.598 57.895 0.00 0.0 0.00 3.02 R
6211 6406 0.249031 GCAACACAAACCTGCTCCAC 60.249 55.000 0.00 0.0 33.20 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.473755 ACATCACCAGTTCACCAGCA 59.526 50.000 0.00 0.00 0.00 4.41
58 59 1.809547 GCCCAAACAAAGCTCTCTCTC 59.190 52.381 0.00 0.00 0.00 3.20
59 60 2.551938 GCCCAAACAAAGCTCTCTCTCT 60.552 50.000 0.00 0.00 0.00 3.10
60 61 3.072944 CCCAAACAAAGCTCTCTCTCTG 58.927 50.000 0.00 0.00 0.00 3.35
106 122 4.477975 CCGGTGTCTCGTCTCGCC 62.478 72.222 0.00 0.00 0.00 5.54
253 281 1.522580 CTTTCGCTGGGCTAGGAGC 60.523 63.158 0.00 0.00 41.46 4.70
392 450 1.461268 TGTGTGCTCTTCTCCCCCA 60.461 57.895 0.00 0.00 0.00 4.96
444 507 0.606604 GTCTTGCTACGGAGGTTGGA 59.393 55.000 0.00 0.00 0.00 3.53
508 571 0.322975 ACCTGACTGTGAGATGTGGC 59.677 55.000 0.00 0.00 0.00 5.01
511 574 0.322648 TGACTGTGAGATGTGGCCTG 59.677 55.000 3.32 0.00 0.00 4.85
515 578 0.036732 TGTGAGATGTGGCCTGGTTC 59.963 55.000 3.32 0.00 0.00 3.62
516 579 0.036732 GTGAGATGTGGCCTGGTTCA 59.963 55.000 3.32 0.00 0.00 3.18
543 606 2.125552 TTGATGCGGCGGTCTCTG 60.126 61.111 9.78 0.00 0.00 3.35
544 607 4.819761 TGATGCGGCGGTCTCTGC 62.820 66.667 9.78 0.00 38.78 4.26
582 645 2.492881 TGGGAATGTGATTGATGTGTGC 59.507 45.455 0.00 0.00 0.00 4.57
590 680 5.893687 TGTGATTGATGTGTGCATAATTCC 58.106 37.500 0.00 0.00 35.07 3.01
611 701 3.117888 CCTAGTTATGTTGTCCATGGGCT 60.118 47.826 19.09 0.00 34.86 5.19
642 732 1.202545 TGTTGTTGTCGGGTCAATCGA 60.203 47.619 0.00 0.00 0.00 3.59
682 772 8.747471 CAGGTAGAGAGATATCTATCATTGCAA 58.253 37.037 25.22 0.00 35.67 4.08
762 852 5.519927 GGGCATTTATGTTTCCTCAAATTCG 59.480 40.000 0.00 0.00 0.00 3.34
877 968 1.812235 TCAACTGAAGTGCATGCGAT 58.188 45.000 14.09 0.04 0.00 4.58
878 969 2.971307 TCAACTGAAGTGCATGCGATA 58.029 42.857 14.09 0.00 0.00 2.92
879 970 2.672874 TCAACTGAAGTGCATGCGATAC 59.327 45.455 14.09 5.82 0.00 2.24
880 971 2.385013 ACTGAAGTGCATGCGATACA 57.615 45.000 14.09 9.89 0.00 2.29
881 972 2.698803 ACTGAAGTGCATGCGATACAA 58.301 42.857 14.09 0.00 0.00 2.41
882 973 3.273434 ACTGAAGTGCATGCGATACAAT 58.727 40.909 14.09 0.00 0.00 2.71
884 975 2.223317 TGAAGTGCATGCGATACAATGC 60.223 45.455 14.09 0.75 40.20 3.56
899 992 1.408340 CAATGCCAATGCCACCGAATA 59.592 47.619 0.00 0.00 36.33 1.75
1086 1179 1.228124 CCGTGGCAAGGACAAGGAA 60.228 57.895 14.80 0.00 42.81 3.36
1212 1305 0.471617 CCAAGCATAGGGACAGGGAG 59.528 60.000 0.00 0.00 0.00 4.30
1350 1443 2.689034 AGGGAGCGGGAAAGGGAG 60.689 66.667 0.00 0.00 0.00 4.30
1357 1450 0.037734 GCGGGAAAGGGAGAAGGAAA 59.962 55.000 0.00 0.00 0.00 3.13
1578 1671 1.269831 GCGAGGTATGCCCTTGAGTAG 60.270 57.143 0.00 0.00 46.66 2.57
1617 1713 6.605471 TCACTAGCCTTTTCTTCAGTCATA 57.395 37.500 0.00 0.00 0.00 2.15
1646 1742 9.462174 TTTGCACACTGTTAAATCTCTTAATTG 57.538 29.630 0.00 0.00 0.00 2.32
1826 1922 5.220854 CGAGAAAAGACAAGCTGAAAAGGAA 60.221 40.000 0.00 0.00 0.00 3.36
1910 2006 2.022764 TGTTATCCAGCATGACACCG 57.977 50.000 0.00 0.00 39.69 4.94
2147 2243 4.141824 TGTTTCTTGTTTTCCCCCATTGTC 60.142 41.667 0.00 0.00 0.00 3.18
2228 2324 1.543208 GGTGGAGCAGTTGTCATGACA 60.543 52.381 24.56 24.56 39.98 3.58
2315 2411 6.215636 ACTTGTTATTACTGGTTCCCTCTGAT 59.784 38.462 0.00 0.00 0.00 2.90
2410 2506 4.474226 AGCAAAGAAACGAAGCTTACAG 57.526 40.909 0.00 0.00 29.98 2.74
2417 2513 1.375908 CGAAGCTTACAGGGCTGCA 60.376 57.895 0.00 0.00 40.19 4.41
2420 2516 0.038744 AAGCTTACAGGGCTGCACAT 59.961 50.000 4.01 0.00 40.19 3.21
2558 2654 5.121454 GTCAAAGAAACCTATGCTCTCACAG 59.879 44.000 0.00 0.00 0.00 3.66
2714 2812 3.306088 CCGGTGAAGCAGAGAAGAAGTTA 60.306 47.826 0.00 0.00 0.00 2.24
2794 2892 0.243636 GGGACAACCTGAAAATGCCG 59.756 55.000 0.00 0.00 35.85 5.69
2821 2919 5.578776 CCGGAACTTTTGCATAGATTTACC 58.421 41.667 0.00 0.00 0.00 2.85
2937 3035 4.505922 GCATCAGATTACTACACTGCTGAC 59.494 45.833 0.00 0.00 35.49 3.51
3354 3452 2.341176 GCTGCTGCAAACAAGGGG 59.659 61.111 11.11 0.00 39.41 4.79
3426 3524 6.634805 TGTTATCACTGAGATGGAAGAGTTC 58.365 40.000 0.00 0.00 37.57 3.01
3460 3558 7.067494 GTCTGCAATTGAATGAAGGTAACCTAT 59.933 37.037 10.34 0.00 31.13 2.57
3463 3561 8.034215 TGCAATTGAATGAAGGTAACCTATTTG 58.966 33.333 10.34 0.00 31.13 2.32
3630 3761 2.079925 GACACAAGCAGATTGGGAGTC 58.920 52.381 7.89 6.42 45.95 3.36
3847 3978 3.274288 GTTGGTATTGAGGAAGAGGCTG 58.726 50.000 0.00 0.00 0.00 4.85
3903 4034 2.618053 GATGAATTCGGTCGAGTGGTT 58.382 47.619 0.04 0.00 0.00 3.67
3932 4064 0.182061 CTGCATGCTGTCCTACCCAT 59.818 55.000 20.33 0.00 0.00 4.00
3941 4073 0.831307 GTCCTACCCATCCTCACACC 59.169 60.000 0.00 0.00 0.00 4.16
3942 4074 0.716591 TCCTACCCATCCTCACACCT 59.283 55.000 0.00 0.00 0.00 4.00
3948 4080 0.911525 CCATCCTCACACCTGGGTCT 60.912 60.000 0.00 0.00 0.00 3.85
4073 4207 6.018589 TCGCATTTTTGACACCATCATTTA 57.981 33.333 0.00 0.00 37.11 1.40
4074 4208 6.629128 TCGCATTTTTGACACCATCATTTAT 58.371 32.000 0.00 0.00 37.11 1.40
4168 4308 3.138283 TGTTTTTCCTCCAGATGACACCT 59.862 43.478 0.00 0.00 0.00 4.00
4439 4579 1.327303 TTGTTGGTCCTGTTGATGCC 58.673 50.000 0.00 0.00 0.00 4.40
4691 4846 5.524646 CCACACTGATGATTTTTGTTTTGCT 59.475 36.000 0.00 0.00 0.00 3.91
4801 4962 8.576442 TCTCGTCTGAATATTGCATGTTATCTA 58.424 33.333 0.00 0.00 0.00 1.98
4804 4965 9.586150 CGTCTGAATATTGCATGTTATCTAAAC 57.414 33.333 0.00 0.00 0.00 2.01
4841 5002 5.358160 GCTTGAATGGAAGTGGCTAACTAAT 59.642 40.000 0.00 0.00 38.56 1.73
4850 5011 3.629398 AGTGGCTAACTAATCTGCAATGC 59.371 43.478 0.00 0.00 37.36 3.56
4994 5171 0.869730 GCTCGGCGACAAAAAGGTAA 59.130 50.000 4.99 0.00 0.00 2.85
5032 5209 2.104170 CCTCTCCTGTTCTGTACTCCC 58.896 57.143 0.00 0.00 0.00 4.30
5035 5212 2.104170 CTCCTGTTCTGTACTCCCTCC 58.896 57.143 0.00 0.00 0.00 4.30
5044 5221 2.101582 CTGTACTCCCTCCGATCCAAAG 59.898 54.545 0.00 0.00 0.00 2.77
5047 5224 3.047695 ACTCCCTCCGATCCAAAGTAT 57.952 47.619 0.00 0.00 0.00 2.12
5090 5267 8.245701 TCAAATTTGAACTAAAACCACAACAC 57.754 30.769 18.45 0.00 33.55 3.32
5160 5337 5.754782 TGTTTTGCCATATCCAGATGTACT 58.245 37.500 0.00 0.00 0.00 2.73
5161 5338 6.894682 TGTTTTGCCATATCCAGATGTACTA 58.105 36.000 0.00 0.00 0.00 1.82
5162 5339 6.992123 TGTTTTGCCATATCCAGATGTACTAG 59.008 38.462 0.00 0.00 0.00 2.57
5227 5405 1.098712 TCAAACGAAGCGCCCAGTTT 61.099 50.000 15.78 15.78 37.29 2.66
5230 5408 2.978010 CGAAGCGCCCAGTTTGGT 60.978 61.111 2.29 0.00 35.17 3.67
5266 5444 2.369394 CCGCCAAAGAAGCCTAAGAAT 58.631 47.619 0.00 0.00 0.00 2.40
5305 5483 1.227853 GTGAACAGGAACCAGCGGT 60.228 57.895 0.00 0.00 37.65 5.68
5329 5507 2.799412 CTGTCTAGCGAATCTGCAATCC 59.201 50.000 0.00 0.00 37.31 3.01
5373 5551 2.750237 GGACGGAAGGCGCCAAAT 60.750 61.111 31.54 14.90 43.44 2.32
5438 5619 5.048991 ACCGTAAGAACCTGTAAATTTGCAG 60.049 40.000 24.52 24.52 39.16 4.41
5466 5647 4.261572 AACCGATTGTTTTGATGGTGACAG 60.262 41.667 0.00 0.00 37.66 3.51
5579 5766 6.010219 GCTAGCCTTTATGGGGAAAATGATA 58.990 40.000 2.29 0.00 36.00 2.15
5586 5773 7.125659 CCTTTATGGGGAAAATGATACAGGTTT 59.874 37.037 0.00 0.00 0.00 3.27
5591 5778 5.449999 GGGGAAAATGATACAGGTTTTAGCG 60.450 44.000 0.00 0.00 0.00 4.26
5592 5779 5.034797 GGAAAATGATACAGGTTTTAGCGC 58.965 41.667 0.00 0.00 0.00 5.92
5593 5780 5.163652 GGAAAATGATACAGGTTTTAGCGCT 60.164 40.000 17.26 17.26 0.00 5.92
5616 5811 6.151817 GCTCAGTTAGGATTTCTTTTCCATGT 59.848 38.462 0.00 0.00 35.59 3.21
5621 5816 8.112183 AGTTAGGATTTCTTTTCCATGTCAGAT 58.888 33.333 0.00 0.00 35.59 2.90
5622 5817 6.770746 AGGATTTCTTTTCCATGTCAGATG 57.229 37.500 0.00 0.00 35.59 2.90
5623 5818 5.126707 AGGATTTCTTTTCCATGTCAGATGC 59.873 40.000 0.00 0.00 35.59 3.91
5624 5819 5.105635 GGATTTCTTTTCCATGTCAGATGCA 60.106 40.000 0.00 0.00 33.21 3.96
5625 5820 5.988310 TTTCTTTTCCATGTCAGATGCAT 57.012 34.783 0.00 0.00 0.00 3.96
5626 5821 4.976224 TCTTTTCCATGTCAGATGCATG 57.024 40.909 2.46 0.00 42.29 4.06
5627 5822 4.338012 TCTTTTCCATGTCAGATGCATGT 58.662 39.130 2.46 0.00 41.38 3.21
5628 5823 5.499313 TCTTTTCCATGTCAGATGCATGTA 58.501 37.500 2.46 0.00 41.38 2.29
5629 5824 6.124340 TCTTTTCCATGTCAGATGCATGTAT 58.876 36.000 2.46 0.00 41.38 2.29
5630 5825 6.261603 TCTTTTCCATGTCAGATGCATGTATC 59.738 38.462 15.28 15.28 41.38 2.24
5631 5826 4.693042 TCCATGTCAGATGCATGTATCA 57.307 40.909 23.43 3.08 41.38 2.15
5632 5827 5.237236 TCCATGTCAGATGCATGTATCAT 57.763 39.130 23.43 5.52 41.38 2.45
5633 5828 5.001232 TCCATGTCAGATGCATGTATCATG 58.999 41.667 23.43 22.11 41.38 3.07
5634 5829 4.760204 CCATGTCAGATGCATGTATCATGT 59.240 41.667 23.43 2.62 41.38 3.21
5635 5830 5.240844 CCATGTCAGATGCATGTATCATGTT 59.759 40.000 23.43 2.27 41.38 2.71
5636 5831 6.238925 CCATGTCAGATGCATGTATCATGTTT 60.239 38.462 23.43 1.91 41.38 2.83
5637 5832 6.126568 TGTCAGATGCATGTATCATGTTTG 57.873 37.500 23.43 13.47 0.00 2.93
5638 5833 5.648960 TGTCAGATGCATGTATCATGTTTGT 59.351 36.000 23.43 0.51 0.00 2.83
5639 5834 5.969435 GTCAGATGCATGTATCATGTTTGTG 59.031 40.000 23.43 12.22 0.00 3.33
5640 5835 5.648960 TCAGATGCATGTATCATGTTTGTGT 59.351 36.000 23.43 0.00 0.00 3.72
5940 6135 5.983333 AGGAAATGGTAAGAGGATGATGT 57.017 39.130 0.00 0.00 0.00 3.06
5941 6136 6.332976 AGGAAATGGTAAGAGGATGATGTT 57.667 37.500 0.00 0.00 0.00 2.71
5942 6137 6.360618 AGGAAATGGTAAGAGGATGATGTTC 58.639 40.000 0.00 0.00 0.00 3.18
5943 6138 6.159398 AGGAAATGGTAAGAGGATGATGTTCT 59.841 38.462 0.00 0.00 0.00 3.01
5944 6139 7.348274 AGGAAATGGTAAGAGGATGATGTTCTA 59.652 37.037 0.00 0.00 0.00 2.10
5945 6140 8.160106 GGAAATGGTAAGAGGATGATGTTCTAT 58.840 37.037 0.00 0.00 0.00 1.98
5946 6141 9.566432 GAAATGGTAAGAGGATGATGTTCTATT 57.434 33.333 0.00 0.00 0.00 1.73
5947 6142 8.915057 AATGGTAAGAGGATGATGTTCTATTG 57.085 34.615 0.00 0.00 0.00 1.90
5948 6143 7.437713 TGGTAAGAGGATGATGTTCTATTGT 57.562 36.000 0.00 0.00 0.00 2.71
5949 6144 7.500992 TGGTAAGAGGATGATGTTCTATTGTC 58.499 38.462 0.00 0.00 0.00 3.18
5950 6145 7.345653 TGGTAAGAGGATGATGTTCTATTGTCT 59.654 37.037 0.00 0.00 0.00 3.41
5951 6146 8.207545 GGTAAGAGGATGATGTTCTATTGTCTT 58.792 37.037 0.00 0.00 0.00 3.01
5952 6147 9.039870 GTAAGAGGATGATGTTCTATTGTCTTG 57.960 37.037 0.00 0.00 0.00 3.02
5953 6148 7.192852 AGAGGATGATGTTCTATTGTCTTGT 57.807 36.000 0.00 0.00 0.00 3.16
5954 6149 7.046652 AGAGGATGATGTTCTATTGTCTTGTG 58.953 38.462 0.00 0.00 0.00 3.33
5955 6150 6.950842 AGGATGATGTTCTATTGTCTTGTGA 58.049 36.000 0.00 0.00 0.00 3.58
5956 6151 7.397221 AGGATGATGTTCTATTGTCTTGTGAA 58.603 34.615 0.00 0.00 0.00 3.18
5957 6152 7.884877 AGGATGATGTTCTATTGTCTTGTGAAA 59.115 33.333 0.00 0.00 0.00 2.69
5958 6153 8.680903 GGATGATGTTCTATTGTCTTGTGAAAT 58.319 33.333 0.00 0.00 0.00 2.17
5961 6156 9.681692 TGATGTTCTATTGTCTTGTGAAATTTG 57.318 29.630 0.00 0.00 0.00 2.32
5962 6157 9.897744 GATGTTCTATTGTCTTGTGAAATTTGA 57.102 29.630 0.00 0.00 0.00 2.69
5964 6159 9.734620 TGTTCTATTGTCTTGTGAAATTTGAAG 57.265 29.630 0.00 0.00 0.00 3.02
5965 6160 9.736023 GTTCTATTGTCTTGTGAAATTTGAAGT 57.264 29.630 0.00 0.00 0.00 3.01
5972 6167 9.698309 TGTCTTGTGAAATTTGAAGTTAAAACA 57.302 25.926 0.00 0.00 0.00 2.83
5973 6168 9.952341 GTCTTGTGAAATTTGAAGTTAAAACAC 57.048 29.630 0.00 0.00 0.00 3.32
5974 6169 9.698309 TCTTGTGAAATTTGAAGTTAAAACACA 57.302 25.926 0.00 4.31 34.19 3.72
5984 6179 9.743057 TTTGAAGTTAAAACACATTACAGGATG 57.257 29.630 0.00 0.00 46.00 3.51
5985 6180 7.367285 TGAAGTTAAAACACATTACAGGATGC 58.633 34.615 0.00 0.00 42.53 3.91
5986 6181 6.892658 AGTTAAAACACATTACAGGATGCA 57.107 33.333 0.00 0.00 42.53 3.96
5987 6182 7.283625 AGTTAAAACACATTACAGGATGCAA 57.716 32.000 0.00 0.00 42.53 4.08
5988 6183 7.370383 AGTTAAAACACATTACAGGATGCAAG 58.630 34.615 0.00 0.00 42.53 4.01
5989 6184 3.855689 AACACATTACAGGATGCAAGC 57.144 42.857 0.00 0.00 42.53 4.01
5990 6185 3.077484 ACACATTACAGGATGCAAGCT 57.923 42.857 0.00 0.00 42.53 3.74
5991 6186 4.220693 ACACATTACAGGATGCAAGCTA 57.779 40.909 0.00 0.00 42.53 3.32
5992 6187 4.785301 ACACATTACAGGATGCAAGCTAT 58.215 39.130 0.00 0.00 42.53 2.97
5993 6188 4.577693 ACACATTACAGGATGCAAGCTATG 59.422 41.667 0.00 0.00 42.53 2.23
5994 6189 4.818005 CACATTACAGGATGCAAGCTATGA 59.182 41.667 0.00 0.00 42.53 2.15
5995 6190 5.297527 CACATTACAGGATGCAAGCTATGAA 59.702 40.000 0.00 0.00 42.53 2.57
5996 6191 5.887598 ACATTACAGGATGCAAGCTATGAAA 59.112 36.000 0.00 0.00 42.53 2.69
5997 6192 6.377996 ACATTACAGGATGCAAGCTATGAAAA 59.622 34.615 0.00 0.00 42.53 2.29
5998 6193 6.832520 TTACAGGATGCAAGCTATGAAAAA 57.167 33.333 0.00 0.00 42.53 1.94
5999 6194 5.320549 ACAGGATGCAAGCTATGAAAAAG 57.679 39.130 0.00 0.00 42.53 2.27
6000 6195 5.012239 ACAGGATGCAAGCTATGAAAAAGA 58.988 37.500 0.00 0.00 42.53 2.52
6001 6196 5.105997 ACAGGATGCAAGCTATGAAAAAGAC 60.106 40.000 0.00 0.00 42.53 3.01
6002 6197 5.012239 AGGATGCAAGCTATGAAAAAGACA 58.988 37.500 0.00 0.00 0.00 3.41
6003 6198 5.477984 AGGATGCAAGCTATGAAAAAGACAA 59.522 36.000 0.00 0.00 0.00 3.18
6004 6199 6.015180 AGGATGCAAGCTATGAAAAAGACAAA 60.015 34.615 0.00 0.00 0.00 2.83
6005 6200 6.815142 GGATGCAAGCTATGAAAAAGACAAAT 59.185 34.615 0.00 0.00 0.00 2.32
6006 6201 7.332678 GGATGCAAGCTATGAAAAAGACAAATT 59.667 33.333 0.00 0.00 0.00 1.82
6007 6202 7.642071 TGCAAGCTATGAAAAAGACAAATTC 57.358 32.000 0.00 0.00 0.00 2.17
6008 6203 7.208777 TGCAAGCTATGAAAAAGACAAATTCA 58.791 30.769 0.00 0.00 37.47 2.57
6009 6204 7.383029 TGCAAGCTATGAAAAAGACAAATTCAG 59.617 33.333 0.00 0.00 36.59 3.02
6010 6205 7.620806 GCAAGCTATGAAAAAGACAAATTCAGC 60.621 37.037 0.00 0.00 36.59 4.26
6011 6206 6.985117 AGCTATGAAAAAGACAAATTCAGCA 58.015 32.000 0.00 0.00 36.59 4.41
6012 6207 7.436118 AGCTATGAAAAAGACAAATTCAGCAA 58.564 30.769 0.00 0.00 36.59 3.91
6013 6208 8.092687 AGCTATGAAAAAGACAAATTCAGCAAT 58.907 29.630 0.00 0.00 36.59 3.56
6014 6209 8.166706 GCTATGAAAAAGACAAATTCAGCAATG 58.833 33.333 0.00 0.00 36.59 2.82
6015 6210 9.414295 CTATGAAAAAGACAAATTCAGCAATGA 57.586 29.630 0.00 0.00 36.59 2.57
6016 6211 8.665643 ATGAAAAAGACAAATTCAGCAATGAA 57.334 26.923 0.00 0.00 36.59 2.57
6017 6212 8.665643 TGAAAAAGACAAATTCAGCAATGAAT 57.334 26.923 0.00 0.00 39.93 2.57
6018 6213 9.761504 TGAAAAAGACAAATTCAGCAATGAATA 57.238 25.926 4.04 0.00 37.52 1.75
6020 6215 9.768662 AAAAAGACAAATTCAGCAATGAATAGT 57.231 25.926 4.04 6.36 37.52 2.12
6021 6216 8.752766 AAAGACAAATTCAGCAATGAATAGTG 57.247 30.769 11.39 11.00 37.52 2.74
6022 6217 7.692460 AGACAAATTCAGCAATGAATAGTGA 57.308 32.000 15.81 0.00 37.52 3.41
6023 6218 7.533426 AGACAAATTCAGCAATGAATAGTGAC 58.467 34.615 15.81 11.80 37.52 3.67
6024 6219 7.175467 AGACAAATTCAGCAATGAATAGTGACA 59.825 33.333 15.81 0.00 37.52 3.58
6025 6220 7.310664 ACAAATTCAGCAATGAATAGTGACAG 58.689 34.615 15.81 2.81 37.52 3.51
6026 6221 4.952262 TTCAGCAATGAATAGTGACAGC 57.048 40.909 0.00 0.00 0.00 4.40
6027 6222 3.941573 TCAGCAATGAATAGTGACAGCA 58.058 40.909 0.00 0.00 0.00 4.41
6028 6223 3.686241 TCAGCAATGAATAGTGACAGCAC 59.314 43.478 0.00 0.00 45.49 4.40
6048 6243 6.956299 GCACTATTCAATGCTGATTTTGTT 57.044 33.333 0.00 0.00 38.84 2.83
6049 6244 7.355332 GCACTATTCAATGCTGATTTTGTTT 57.645 32.000 0.00 0.00 38.84 2.83
6050 6245 7.799784 GCACTATTCAATGCTGATTTTGTTTT 58.200 30.769 0.00 0.00 38.84 2.43
6051 6246 7.953710 GCACTATTCAATGCTGATTTTGTTTTC 59.046 33.333 0.00 0.00 38.84 2.29
6052 6247 9.199982 CACTATTCAATGCTGATTTTGTTTTCT 57.800 29.630 0.00 0.00 0.00 2.52
6053 6248 9.415544 ACTATTCAATGCTGATTTTGTTTTCTC 57.584 29.630 0.00 0.00 0.00 2.87
6054 6249 9.414295 CTATTCAATGCTGATTTTGTTTTCTCA 57.586 29.630 0.00 0.00 0.00 3.27
6055 6250 8.842358 ATTCAATGCTGATTTTGTTTTCTCAT 57.158 26.923 0.00 0.00 0.00 2.90
6056 6251 9.932207 ATTCAATGCTGATTTTGTTTTCTCATA 57.068 25.926 0.00 0.00 0.00 2.15
6057 6252 8.975410 TCAATGCTGATTTTGTTTTCTCATAG 57.025 30.769 0.00 0.00 0.00 2.23
6058 6253 7.543172 TCAATGCTGATTTTGTTTTCTCATAGC 59.457 33.333 0.00 0.00 0.00 2.97
6059 6254 6.579666 TGCTGATTTTGTTTTCTCATAGCT 57.420 33.333 0.00 0.00 0.00 3.32
6060 6255 6.615088 TGCTGATTTTGTTTTCTCATAGCTC 58.385 36.000 0.00 0.00 0.00 4.09
6061 6256 6.207221 TGCTGATTTTGTTTTCTCATAGCTCA 59.793 34.615 0.00 0.00 0.00 4.26
6062 6257 6.525976 GCTGATTTTGTTTTCTCATAGCTCAC 59.474 38.462 0.00 0.00 0.00 3.51
6063 6258 7.509141 TGATTTTGTTTTCTCATAGCTCACA 57.491 32.000 0.00 0.00 0.00 3.58
6064 6259 8.114331 TGATTTTGTTTTCTCATAGCTCACAT 57.886 30.769 0.00 0.00 0.00 3.21
6065 6260 8.239314 TGATTTTGTTTTCTCATAGCTCACATC 58.761 33.333 0.00 0.00 0.00 3.06
6066 6261 7.750229 TTTTGTTTTCTCATAGCTCACATCT 57.250 32.000 0.00 0.00 0.00 2.90
6067 6262 7.750229 TTTGTTTTCTCATAGCTCACATCTT 57.250 32.000 0.00 0.00 0.00 2.40
6068 6263 6.732531 TGTTTTCTCATAGCTCACATCTTG 57.267 37.500 0.00 0.00 0.00 3.02
6069 6264 6.233434 TGTTTTCTCATAGCTCACATCTTGT 58.767 36.000 0.00 0.00 0.00 3.16
6070 6265 7.386059 TGTTTTCTCATAGCTCACATCTTGTA 58.614 34.615 0.00 0.00 0.00 2.41
6071 6266 7.877612 TGTTTTCTCATAGCTCACATCTTGTAA 59.122 33.333 0.00 0.00 0.00 2.41
6072 6267 8.887717 GTTTTCTCATAGCTCACATCTTGTAAT 58.112 33.333 0.00 0.00 0.00 1.89
6073 6268 8.429493 TTTCTCATAGCTCACATCTTGTAATG 57.571 34.615 0.00 0.00 0.00 1.90
6074 6269 7.117285 TCTCATAGCTCACATCTTGTAATGT 57.883 36.000 0.00 0.00 40.49 2.71
6086 6281 7.995289 ACATCTTGTAATGTGTTTGAACTTGA 58.005 30.769 0.00 0.00 38.43 3.02
6087 6282 8.465999 ACATCTTGTAATGTGTTTGAACTTGAA 58.534 29.630 0.00 0.00 38.43 2.69
6088 6283 9.299963 CATCTTGTAATGTGTTTGAACTTGAAA 57.700 29.630 0.00 0.00 0.00 2.69
6090 6285 9.868277 TCTTGTAATGTGTTTGAACTTGAAATT 57.132 25.926 0.00 0.00 0.00 1.82
6098 6293 8.930760 TGTGTTTGAACTTGAAATTTTGTAAGG 58.069 29.630 12.45 0.00 0.00 2.69
6099 6294 7.902917 GTGTTTGAACTTGAAATTTTGTAAGGC 59.097 33.333 12.45 7.06 0.00 4.35
6100 6295 7.604164 TGTTTGAACTTGAAATTTTGTAAGGCA 59.396 29.630 12.45 8.73 0.00 4.75
6101 6296 8.447053 GTTTGAACTTGAAATTTTGTAAGGCAA 58.553 29.630 12.45 12.24 34.87 4.52
6102 6297 8.729805 TTGAACTTGAAATTTTGTAAGGCAAT 57.270 26.923 12.45 0.00 36.89 3.56
6103 6298 9.823647 TTGAACTTGAAATTTTGTAAGGCAATA 57.176 25.926 12.45 0.00 36.89 1.90
6104 6299 9.474920 TGAACTTGAAATTTTGTAAGGCAATAG 57.525 29.630 12.45 0.00 36.89 1.73
6105 6300 9.691362 GAACTTGAAATTTTGTAAGGCAATAGA 57.309 29.630 12.45 0.00 36.89 1.98
6107 6302 9.476202 ACTTGAAATTTTGTAAGGCAATAGAAC 57.524 29.630 12.45 0.00 36.89 3.01
6108 6303 9.474920 CTTGAAATTTTGTAAGGCAATAGAACA 57.525 29.630 0.00 0.00 36.89 3.18
6109 6304 9.995003 TTGAAATTTTGTAAGGCAATAGAACAT 57.005 25.926 0.00 0.00 36.89 2.71
6110 6305 9.638239 TGAAATTTTGTAAGGCAATAGAACATC 57.362 29.630 0.00 0.00 36.89 3.06
6111 6306 9.638239 GAAATTTTGTAAGGCAATAGAACATCA 57.362 29.630 0.00 0.00 36.89 3.07
6112 6307 8.986477 AATTTTGTAAGGCAATAGAACATCAC 57.014 30.769 0.00 0.00 36.89 3.06
6113 6308 7.759489 TTTTGTAAGGCAATAGAACATCACT 57.241 32.000 0.00 0.00 36.89 3.41
6114 6309 6.985188 TTGTAAGGCAATAGAACATCACTC 57.015 37.500 0.00 0.00 31.07 3.51
6115 6310 5.109210 TGTAAGGCAATAGAACATCACTCG 58.891 41.667 0.00 0.00 0.00 4.18
6116 6311 3.185246 AGGCAATAGAACATCACTCGG 57.815 47.619 0.00 0.00 0.00 4.63
6117 6312 2.501723 AGGCAATAGAACATCACTCGGT 59.498 45.455 0.00 0.00 0.00 4.69
6118 6313 3.055094 AGGCAATAGAACATCACTCGGTT 60.055 43.478 0.00 0.00 0.00 4.44
6119 6314 4.161565 AGGCAATAGAACATCACTCGGTTA 59.838 41.667 0.00 0.00 0.00 2.85
6120 6315 4.873827 GGCAATAGAACATCACTCGGTTAA 59.126 41.667 0.00 0.00 0.00 2.01
6121 6316 5.220605 GGCAATAGAACATCACTCGGTTAAC 60.221 44.000 0.00 0.00 0.00 2.01
6122 6317 5.350365 GCAATAGAACATCACTCGGTTAACA 59.650 40.000 8.10 0.00 0.00 2.41
6123 6318 6.037172 GCAATAGAACATCACTCGGTTAACAT 59.963 38.462 8.10 0.00 0.00 2.71
6124 6319 7.621991 CAATAGAACATCACTCGGTTAACATC 58.378 38.462 8.10 0.00 0.00 3.06
6125 6320 4.504858 AGAACATCACTCGGTTAACATCC 58.495 43.478 8.10 0.00 0.00 3.51
6126 6321 3.261981 ACATCACTCGGTTAACATCCC 57.738 47.619 8.10 0.00 0.00 3.85
6127 6322 2.569853 ACATCACTCGGTTAACATCCCA 59.430 45.455 8.10 0.00 0.00 4.37
6128 6323 3.199946 ACATCACTCGGTTAACATCCCAT 59.800 43.478 8.10 0.00 0.00 4.00
6129 6324 4.407621 ACATCACTCGGTTAACATCCCATA 59.592 41.667 8.10 0.00 0.00 2.74
6130 6325 5.104693 ACATCACTCGGTTAACATCCCATAA 60.105 40.000 8.10 0.00 0.00 1.90
6131 6326 4.761975 TCACTCGGTTAACATCCCATAAC 58.238 43.478 8.10 0.00 0.00 1.89
6132 6327 4.468510 TCACTCGGTTAACATCCCATAACT 59.531 41.667 8.10 0.00 33.53 2.24
6133 6328 5.046159 TCACTCGGTTAACATCCCATAACTT 60.046 40.000 8.10 0.00 33.53 2.66
6134 6329 5.646360 CACTCGGTTAACATCCCATAACTTT 59.354 40.000 8.10 0.00 33.53 2.66
6135 6330 6.150474 CACTCGGTTAACATCCCATAACTTTT 59.850 38.462 8.10 0.00 33.53 2.27
6136 6331 6.717997 ACTCGGTTAACATCCCATAACTTTTT 59.282 34.615 8.10 0.00 33.53 1.94
6137 6332 6.915349 TCGGTTAACATCCCATAACTTTTTG 58.085 36.000 8.10 0.00 33.53 2.44
6138 6333 6.715718 TCGGTTAACATCCCATAACTTTTTGA 59.284 34.615 8.10 0.00 33.53 2.69
6139 6334 7.394923 TCGGTTAACATCCCATAACTTTTTGAT 59.605 33.333 8.10 0.00 33.53 2.57
6140 6335 8.679100 CGGTTAACATCCCATAACTTTTTGATA 58.321 33.333 8.10 0.00 33.53 2.15
6170 6365 9.980780 TTAGAAAACTTTTAAGCATTGTTTTGC 57.019 25.926 6.83 0.00 39.79 3.68
6179 6374 2.967781 GCATTGTTTTGCGTGGTTTTC 58.032 42.857 0.00 0.00 32.06 2.29
6180 6375 2.349886 GCATTGTTTTGCGTGGTTTTCA 59.650 40.909 0.00 0.00 32.06 2.69
6181 6376 3.783873 GCATTGTTTTGCGTGGTTTTCAC 60.784 43.478 0.00 0.00 42.74 3.18
6182 6377 1.997669 TGTTTTGCGTGGTTTTCACC 58.002 45.000 0.00 0.00 43.23 4.02
6183 6378 1.546476 TGTTTTGCGTGGTTTTCACCT 59.454 42.857 0.00 0.00 44.61 4.00
6184 6379 1.923864 GTTTTGCGTGGTTTTCACCTG 59.076 47.619 0.00 0.00 44.61 4.00
6185 6380 1.178276 TTTGCGTGGTTTTCACCTGT 58.822 45.000 0.00 0.00 44.61 4.00
6186 6381 2.039818 TTGCGTGGTTTTCACCTGTA 57.960 45.000 0.00 0.00 44.61 2.74
6187 6382 2.039818 TGCGTGGTTTTCACCTGTAA 57.960 45.000 0.00 0.00 44.61 2.41
6188 6383 2.577700 TGCGTGGTTTTCACCTGTAAT 58.422 42.857 0.00 0.00 44.61 1.89
6189 6384 2.292016 TGCGTGGTTTTCACCTGTAATG 59.708 45.455 0.00 0.00 44.61 1.90
6190 6385 2.920647 GCGTGGTTTTCACCTGTAATGC 60.921 50.000 0.00 0.00 44.61 3.56
6191 6386 2.552315 CGTGGTTTTCACCTGTAATGCT 59.448 45.455 0.00 0.00 44.61 3.79
6192 6387 3.004315 CGTGGTTTTCACCTGTAATGCTT 59.996 43.478 0.00 0.00 44.61 3.91
6193 6388 4.298332 GTGGTTTTCACCTGTAATGCTTG 58.702 43.478 0.00 0.00 44.61 4.01
6194 6389 3.957497 TGGTTTTCACCTGTAATGCTTGT 59.043 39.130 0.00 0.00 44.61 3.16
6195 6390 4.404073 TGGTTTTCACCTGTAATGCTTGTT 59.596 37.500 0.00 0.00 44.61 2.83
6196 6391 5.105146 TGGTTTTCACCTGTAATGCTTGTTT 60.105 36.000 0.00 0.00 44.61 2.83
6197 6392 5.815222 GGTTTTCACCTGTAATGCTTGTTTT 59.185 36.000 0.00 0.00 40.44 2.43
6198 6393 6.019075 GGTTTTCACCTGTAATGCTTGTTTTC 60.019 38.462 0.00 0.00 40.44 2.29
6199 6394 5.843673 TTCACCTGTAATGCTTGTTTTCA 57.156 34.783 0.00 0.00 0.00 2.69
6200 6395 6.403866 TTCACCTGTAATGCTTGTTTTCAT 57.596 33.333 0.00 0.00 0.00 2.57
6201 6396 7.517614 TTCACCTGTAATGCTTGTTTTCATA 57.482 32.000 0.00 0.00 0.00 2.15
6202 6397 7.701539 TCACCTGTAATGCTTGTTTTCATAT 57.298 32.000 0.00 0.00 0.00 1.78
6203 6398 7.537715 TCACCTGTAATGCTTGTTTTCATATG 58.462 34.615 0.00 0.00 0.00 1.78
6204 6399 7.392953 TCACCTGTAATGCTTGTTTTCATATGA 59.607 33.333 0.00 0.00 0.00 2.15
6205 6400 8.192774 CACCTGTAATGCTTGTTTTCATATGAT 58.807 33.333 6.17 0.00 0.00 2.45
6206 6401 9.407380 ACCTGTAATGCTTGTTTTCATATGATA 57.593 29.630 6.17 0.00 0.00 2.15
6214 6409 9.368674 TGCTTGTTTTCATATGATATTTTGTGG 57.631 29.630 6.17 0.00 0.00 4.17
6215 6410 9.585099 GCTTGTTTTCATATGATATTTTGTGGA 57.415 29.630 6.17 0.00 0.00 4.02
6217 6412 9.585099 TTGTTTTCATATGATATTTTGTGGAGC 57.415 29.630 6.17 0.00 0.00 4.70
6218 6413 8.747471 TGTTTTCATATGATATTTTGTGGAGCA 58.253 29.630 6.17 0.00 0.00 4.26
6219 6414 9.241317 GTTTTCATATGATATTTTGTGGAGCAG 57.759 33.333 6.17 0.00 0.00 4.24
6220 6415 7.514784 TTCATATGATATTTTGTGGAGCAGG 57.485 36.000 6.17 0.00 0.00 4.85
6221 6416 6.604171 TCATATGATATTTTGTGGAGCAGGT 58.396 36.000 0.00 0.00 0.00 4.00
6222 6417 7.062322 TCATATGATATTTTGTGGAGCAGGTT 58.938 34.615 0.00 0.00 0.00 3.50
6223 6418 7.560991 TCATATGATATTTTGTGGAGCAGGTTT 59.439 33.333 0.00 0.00 0.00 3.27
6224 6419 5.389859 TGATATTTTGTGGAGCAGGTTTG 57.610 39.130 0.00 0.00 0.00 2.93
6225 6420 4.832266 TGATATTTTGTGGAGCAGGTTTGT 59.168 37.500 0.00 0.00 0.00 2.83
6226 6421 2.957491 TTTTGTGGAGCAGGTTTGTG 57.043 45.000 0.00 0.00 0.00 3.33
6227 6422 1.846007 TTTGTGGAGCAGGTTTGTGT 58.154 45.000 0.00 0.00 0.00 3.72
6228 6423 1.846007 TTGTGGAGCAGGTTTGTGTT 58.154 45.000 0.00 0.00 0.00 3.32
6229 6424 1.102154 TGTGGAGCAGGTTTGTGTTG 58.898 50.000 0.00 0.00 0.00 3.33
6230 6425 0.249031 GTGGAGCAGGTTTGTGTTGC 60.249 55.000 0.00 0.00 38.09 4.17
6231 6426 1.008538 GGAGCAGGTTTGTGTTGCG 60.009 57.895 0.00 0.00 42.47 4.85
6232 6427 1.724582 GGAGCAGGTTTGTGTTGCGT 61.725 55.000 0.00 0.00 42.47 5.24
6233 6428 0.592247 GAGCAGGTTTGTGTTGCGTG 60.592 55.000 0.00 0.00 42.47 5.34
6234 6429 1.588667 GCAGGTTTGTGTTGCGTGG 60.589 57.895 0.00 0.00 0.00 4.94
6235 6430 1.065600 CAGGTTTGTGTTGCGTGGG 59.934 57.895 0.00 0.00 0.00 4.61
6236 6431 2.279186 GGTTTGTGTTGCGTGGGC 60.279 61.111 0.00 0.00 40.52 5.36
6237 6432 2.781158 GGTTTGTGTTGCGTGGGCT 61.781 57.895 0.00 0.00 40.82 5.19
6238 6433 1.448922 GGTTTGTGTTGCGTGGGCTA 61.449 55.000 0.00 0.00 40.82 3.93
6239 6434 0.596082 GTTTGTGTTGCGTGGGCTAT 59.404 50.000 0.00 0.00 40.82 2.97
6240 6435 1.000717 GTTTGTGTTGCGTGGGCTATT 60.001 47.619 0.00 0.00 40.82 1.73
6241 6436 0.595588 TTGTGTTGCGTGGGCTATTG 59.404 50.000 0.00 0.00 40.82 1.90
6242 6437 1.154035 GTGTTGCGTGGGCTATTGC 60.154 57.895 0.00 0.00 40.82 3.56
6256 6451 3.861834 GCTATTGCCGTGTCTATTTTCG 58.138 45.455 0.00 0.00 0.00 3.46
6257 6452 3.308866 GCTATTGCCGTGTCTATTTTCGT 59.691 43.478 0.00 0.00 0.00 3.85
6258 6453 3.740044 ATTGCCGTGTCTATTTTCGTG 57.260 42.857 0.00 0.00 0.00 4.35
6259 6454 1.434555 TGCCGTGTCTATTTTCGTGG 58.565 50.000 0.00 0.00 0.00 4.94
6260 6455 1.270412 TGCCGTGTCTATTTTCGTGGT 60.270 47.619 0.00 0.00 0.00 4.16
6261 6456 2.029200 TGCCGTGTCTATTTTCGTGGTA 60.029 45.455 0.00 0.00 0.00 3.25
6262 6457 2.601763 GCCGTGTCTATTTTCGTGGTAG 59.398 50.000 0.00 0.00 0.00 3.18
6263 6458 3.674138 GCCGTGTCTATTTTCGTGGTAGA 60.674 47.826 0.00 0.00 0.00 2.59
6264 6459 4.487948 CCGTGTCTATTTTCGTGGTAGAA 58.512 43.478 0.00 0.00 0.00 2.10
6265 6460 4.925054 CCGTGTCTATTTTCGTGGTAGAAA 59.075 41.667 0.00 0.00 38.23 2.52
6266 6461 5.579511 CCGTGTCTATTTTCGTGGTAGAAAT 59.420 40.000 0.00 0.00 39.52 2.17
6267 6462 6.237755 CCGTGTCTATTTTCGTGGTAGAAATC 60.238 42.308 0.00 0.00 39.52 2.17
6268 6463 6.237755 CGTGTCTATTTTCGTGGTAGAAATCC 60.238 42.308 0.00 0.00 39.52 3.01
6269 6464 6.036844 GTGTCTATTTTCGTGGTAGAAATCCC 59.963 42.308 0.00 0.00 39.52 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.605749 AACTGGTGATGTCGGGCCG 62.606 63.158 22.51 22.51 0.00 6.13
45 46 2.008045 GCAGCCAGAGAGAGAGCTTTG 61.008 57.143 0.00 0.00 31.93 2.77
444 507 4.759205 GGCAACGCCCCATCCCTT 62.759 66.667 0.00 0.00 44.06 3.95
508 571 0.468029 AAGCCCACAAGTGAACCAGG 60.468 55.000 0.94 0.00 0.00 4.45
511 574 1.270550 CATCAAGCCCACAAGTGAACC 59.729 52.381 0.94 0.00 0.00 3.62
515 578 1.210931 CGCATCAAGCCCACAAGTG 59.789 57.895 0.00 0.00 41.38 3.16
516 579 1.973281 CCGCATCAAGCCCACAAGT 60.973 57.895 0.00 0.00 41.38 3.16
543 606 1.272781 CAGACACGGATTTCTCTCGC 58.727 55.000 0.00 0.00 0.00 5.03
544 607 1.469940 CCCAGACACGGATTTCTCTCG 60.470 57.143 0.00 0.00 0.00 4.04
550 613 2.039746 TCACATTCCCAGACACGGATTT 59.960 45.455 0.00 0.00 0.00 2.17
556 619 4.012374 ACATCAATCACATTCCCAGACAC 58.988 43.478 0.00 0.00 0.00 3.67
582 645 8.786898 CCATGGACAACATAACTAGGAATTATG 58.213 37.037 5.56 9.08 43.02 1.90
590 680 4.156455 AGCCCATGGACAACATAACTAG 57.844 45.455 15.22 0.00 37.84 2.57
611 701 4.320861 CCCGACAACAACAAGATTATGCAA 60.321 41.667 0.00 0.00 0.00 4.08
642 732 4.593206 TCTCTACCTGACACAAAACTGGAT 59.407 41.667 0.00 0.00 0.00 3.41
682 772 8.067751 TGCACTTATATCACTAGACTCAAACT 57.932 34.615 0.00 0.00 0.00 2.66
791 881 4.338012 CACCCCTCTAATTAAACCGGTTT 58.662 43.478 33.42 33.42 36.63 3.27
796 887 2.688817 GCCCCACCCCTCTAATTAAACC 60.689 54.545 0.00 0.00 0.00 3.27
825 916 7.011857 TGGATGTTTTAAGTTTTTGTTGATGCC 59.988 33.333 0.00 0.00 0.00 4.40
826 917 7.914465 TGGATGTTTTAAGTTTTTGTTGATGC 58.086 30.769 0.00 0.00 0.00 3.91
833 924 9.384682 GATTGCAATGGATGTTTTAAGTTTTTG 57.615 29.630 18.59 0.00 0.00 2.44
877 968 0.322906 TCGGTGGCATTGGCATTGTA 60.323 50.000 16.56 0.18 43.71 2.41
878 969 1.184322 TTCGGTGGCATTGGCATTGT 61.184 50.000 16.56 0.00 43.71 2.71
879 970 0.176219 ATTCGGTGGCATTGGCATTG 59.824 50.000 16.56 11.61 43.71 2.82
880 971 1.774110 TATTCGGTGGCATTGGCATT 58.226 45.000 16.56 2.61 43.71 3.56
881 972 1.614903 CATATTCGGTGGCATTGGCAT 59.385 47.619 16.56 2.33 43.71 4.40
882 973 1.031235 CATATTCGGTGGCATTGGCA 58.969 50.000 9.11 9.11 43.71 4.92
884 975 1.881973 CCTCATATTCGGTGGCATTGG 59.118 52.381 0.00 0.00 0.00 3.16
899 992 3.198417 GGGAAATGGAATGTTTGCCTCAT 59.802 43.478 2.44 0.00 41.96 2.90
970 1063 4.278419 AGTCCAAGATTAACCAACAAGCAC 59.722 41.667 0.00 0.00 0.00 4.40
1086 1179 2.359781 CCTCCTGTGTCTATCCCTCCTT 60.360 54.545 0.00 0.00 0.00 3.36
1212 1305 3.506398 CCTATCTCTTTCCCTCTCCCTC 58.494 54.545 0.00 0.00 0.00 4.30
1350 1443 2.706723 GTCCCTATCCCTCCTTTCCTTC 59.293 54.545 0.00 0.00 0.00 3.46
1357 1450 1.062044 GTCCTTGTCCCTATCCCTCCT 60.062 57.143 0.00 0.00 0.00 3.69
1476 1569 0.612174 TCTTCTGGTCTCCCTCACCG 60.612 60.000 0.00 0.00 36.61 4.94
1478 1571 1.552792 CCTTCTTCTGGTCTCCCTCAC 59.447 57.143 0.00 0.00 0.00 3.51
1499 1592 0.252467 CTCTCCTGGGAGGTCACCTT 60.252 60.000 15.66 0.00 42.20 3.50
1578 1671 5.374898 GCTAGTGAATCGAACAGAAACAAC 58.625 41.667 0.00 0.00 0.00 3.32
1826 1922 0.584876 GTGCAAGACGTAACGCCTTT 59.415 50.000 0.00 0.00 24.92 3.11
2090 2186 6.072508 TGACTTCCATTGACTGAAAACTATGC 60.073 38.462 0.00 0.00 0.00 3.14
2101 2197 3.327757 TGTTAGCCTGACTTCCATTGACT 59.672 43.478 0.00 0.00 0.00 3.41
2410 2506 2.128771 TCCTTTCTTATGTGCAGCCC 57.871 50.000 0.00 0.00 0.00 5.19
2417 2513 9.685276 TTGTCATCATATGTTCCTTTCTTATGT 57.315 29.630 1.90 0.00 0.00 2.29
2558 2654 5.624159 TCATCTTCCATTGGGTCATCATAC 58.376 41.667 2.09 0.00 34.93 2.39
2794 2892 2.682856 TCTATGCAAAAGTTCCGGCATC 59.317 45.455 10.88 0.00 45.09 3.91
2821 2919 6.925165 AGCTGTCAACAGGAAAATGTAAATTG 59.075 34.615 11.87 0.00 43.94 2.32
2890 2988 1.880027 CTTTGCTGCGGAAGTAAGGTT 59.120 47.619 0.00 0.00 31.61 3.50
2937 3035 4.382754 GGTTTCTTAAACTGCAGCATTTCG 59.617 41.667 15.27 3.51 41.14 3.46
3354 3452 0.663688 CAGCATCTGCATCTCCTTGC 59.336 55.000 4.79 0.00 45.16 4.01
3426 3524 0.888736 TCAATTGCAGACCCCACACG 60.889 55.000 0.00 0.00 0.00 4.49
3503 3634 5.913514 GCAACAAGATAATAGCAGCATTCAG 59.086 40.000 0.00 0.00 0.00 3.02
3630 3761 4.698780 TCAATGACAGCTTCCTCTTTGATG 59.301 41.667 8.81 0.00 29.96 3.07
3903 4034 4.346127 AGGACAGCATGCAGATGATTACTA 59.654 41.667 21.98 0.00 42.53 1.82
3932 4064 0.836400 GGAAGACCCAGGTGTGAGGA 60.836 60.000 0.00 0.00 34.14 3.71
3941 4073 6.657875 AGATTTCATAGAAAGGAAGACCCAG 58.342 40.000 0.00 0.00 37.41 4.45
3942 4074 6.642733 AGATTTCATAGAAAGGAAGACCCA 57.357 37.500 0.00 0.00 37.41 4.51
4073 4207 7.120579 TCGAAAGGCTAAACAAATACACATGAT 59.879 33.333 0.00 0.00 0.00 2.45
4074 4208 6.428465 TCGAAAGGCTAAACAAATACACATGA 59.572 34.615 0.00 0.00 0.00 3.07
4168 4308 3.042059 AGATCCCTAAACGCCTCCTTA 57.958 47.619 0.00 0.00 0.00 2.69
4177 4317 4.759516 TTTGTGCGAAAGATCCCTAAAC 57.240 40.909 0.00 0.00 0.00 2.01
4439 4579 7.658179 TTGTCAAGACTAAGAAAGCATAGTG 57.342 36.000 1.53 0.00 32.66 2.74
4529 4674 8.917088 AGATTAACAGCCAGCAACAATATATTT 58.083 29.630 0.00 0.00 0.00 1.40
4576 4728 2.877335 CGTAGCACCCTAAAGTGAGTC 58.123 52.381 0.00 0.00 40.34 3.36
4765 4924 7.912250 GCAATATTCAGACGAGACATTTGATTT 59.088 33.333 0.00 0.00 0.00 2.17
4766 4925 7.066163 TGCAATATTCAGACGAGACATTTGATT 59.934 33.333 0.00 0.00 0.00 2.57
4804 4965 1.165907 TTCAAGCAGGACCAACGCAG 61.166 55.000 0.00 0.00 0.00 5.18
4841 5002 1.075305 TGCAGGAAGGCATTGCAGA 59.925 52.632 11.39 0.00 42.41 4.26
4850 5011 4.614946 CAAGAAAGAAACTTGCAGGAAGG 58.385 43.478 1.40 0.00 38.28 3.46
4994 5171 5.424895 GGAGAGGGAATATCATATGTCAGCT 59.575 44.000 1.90 0.00 0.00 4.24
5032 5209 4.115516 CTGACACATACTTTGGATCGGAG 58.884 47.826 0.00 0.00 0.00 4.63
5035 5212 4.504461 GCTACTGACACATACTTTGGATCG 59.496 45.833 0.00 0.00 0.00 3.69
5044 5221 3.611766 ACCAAGGCTACTGACACATAC 57.388 47.619 0.00 0.00 0.00 2.39
5047 5224 1.765904 TGAACCAAGGCTACTGACACA 59.234 47.619 0.00 0.00 0.00 3.72
5082 5259 7.066284 CCCTCTGATCTAAAATAAGTGTTGTGG 59.934 40.741 0.00 0.00 0.00 4.17
5086 5263 8.152023 ACTCCCTCTGATCTAAAATAAGTGTT 57.848 34.615 0.00 0.00 0.00 3.32
5090 5267 7.957002 TGCTACTCCCTCTGATCTAAAATAAG 58.043 38.462 0.00 0.00 0.00 1.73
5098 5275 5.304101 CAGTAAATGCTACTCCCTCTGATCT 59.696 44.000 0.00 0.00 0.00 2.75
5160 5337 9.871238 GATGAAGAATTAGGTCAGTAACAACTA 57.129 33.333 0.00 0.00 0.00 2.24
5161 5338 8.375506 TGATGAAGAATTAGGTCAGTAACAACT 58.624 33.333 0.00 0.00 0.00 3.16
5162 5339 8.547967 TGATGAAGAATTAGGTCAGTAACAAC 57.452 34.615 0.00 0.00 0.00 3.32
5266 5444 1.597854 CACTCCGCTGCAACCTCAA 60.598 57.895 0.00 0.00 0.00 3.02
5305 5483 2.024414 TGCAGATTCGCTAGACAGCTA 58.976 47.619 0.00 0.00 46.26 3.32
5310 5488 2.799412 CAGGATTGCAGATTCGCTAGAC 59.201 50.000 0.00 0.00 0.00 2.59
5329 5507 3.726607 GGTGACTCATAATCTGCTCCAG 58.273 50.000 0.00 0.00 0.00 3.86
5394 5572 2.755876 AGCGCATCTGAGGACGGA 60.756 61.111 11.47 0.00 35.76 4.69
5415 5593 5.365403 TGCAAATTTACAGGTTCTTACGG 57.635 39.130 0.00 0.00 0.00 4.02
5416 5594 4.851558 GCTGCAAATTTACAGGTTCTTACG 59.148 41.667 18.04 0.00 34.38 3.18
5466 5647 2.545526 CACCATCTGTGTGTGTCAAGAC 59.454 50.000 0.00 0.00 40.26 3.01
5493 5680 4.539509 AGAAACATCGTTGCGTTACAAA 57.460 36.364 0.00 0.00 40.82 2.83
5494 5681 5.163933 GGATAGAAACATCGTTGCGTTACAA 60.164 40.000 0.00 0.00 35.33 2.41
5526 5713 5.171476 TGCTTCTATCTGCAACTTGTAGAC 58.829 41.667 11.32 0.01 41.73 2.59
5559 5746 5.011023 CCTGTATCATTTTCCCCATAAAGGC 59.989 44.000 0.00 0.00 35.39 4.35
5568 5755 5.578776 CGCTAAAACCTGTATCATTTTCCC 58.421 41.667 0.00 0.00 0.00 3.97
5579 5766 2.256117 AACTGAGCGCTAAAACCTGT 57.744 45.000 11.50 4.64 0.00 4.00
5586 5773 4.737855 AGAAATCCTAACTGAGCGCTAA 57.262 40.909 11.50 0.00 0.00 3.09
5591 5778 6.151817 ACATGGAAAAGAAATCCTAACTGAGC 59.848 38.462 0.00 0.00 37.85 4.26
5592 5779 7.391554 TGACATGGAAAAGAAATCCTAACTGAG 59.608 37.037 0.00 0.00 37.85 3.35
5593 5780 7.230747 TGACATGGAAAAGAAATCCTAACTGA 58.769 34.615 0.00 0.00 37.85 3.41
5616 5811 5.648960 ACACAAACATGATACATGCATCTGA 59.351 36.000 7.44 0.00 0.00 3.27
5918 6113 5.983333 ACATCATCCTCTTACCATTTCCT 57.017 39.130 0.00 0.00 0.00 3.36
5919 6114 6.360618 AGAACATCATCCTCTTACCATTTCC 58.639 40.000 0.00 0.00 0.00 3.13
5920 6115 9.566432 AATAGAACATCATCCTCTTACCATTTC 57.434 33.333 0.00 0.00 0.00 2.17
5921 6116 9.347240 CAATAGAACATCATCCTCTTACCATTT 57.653 33.333 0.00 0.00 0.00 2.32
5922 6117 8.497745 ACAATAGAACATCATCCTCTTACCATT 58.502 33.333 0.00 0.00 0.00 3.16
5923 6118 8.038862 ACAATAGAACATCATCCTCTTACCAT 57.961 34.615 0.00 0.00 0.00 3.55
5924 6119 7.345653 AGACAATAGAACATCATCCTCTTACCA 59.654 37.037 0.00 0.00 0.00 3.25
5925 6120 7.731054 AGACAATAGAACATCATCCTCTTACC 58.269 38.462 0.00 0.00 0.00 2.85
5926 6121 9.039870 CAAGACAATAGAACATCATCCTCTTAC 57.960 37.037 0.00 0.00 0.00 2.34
5927 6122 8.762645 ACAAGACAATAGAACATCATCCTCTTA 58.237 33.333 0.00 0.00 0.00 2.10
5928 6123 7.551974 CACAAGACAATAGAACATCATCCTCTT 59.448 37.037 0.00 0.00 0.00 2.85
5929 6124 7.046652 CACAAGACAATAGAACATCATCCTCT 58.953 38.462 0.00 0.00 0.00 3.69
5930 6125 7.044181 TCACAAGACAATAGAACATCATCCTC 58.956 38.462 0.00 0.00 0.00 3.71
5931 6126 6.950842 TCACAAGACAATAGAACATCATCCT 58.049 36.000 0.00 0.00 0.00 3.24
5932 6127 7.615582 TTCACAAGACAATAGAACATCATCC 57.384 36.000 0.00 0.00 0.00 3.51
5935 6130 9.681692 CAAATTTCACAAGACAATAGAACATCA 57.318 29.630 0.00 0.00 0.00 3.07
5936 6131 9.897744 TCAAATTTCACAAGACAATAGAACATC 57.102 29.630 0.00 0.00 0.00 3.06
5938 6133 9.734620 CTTCAAATTTCACAAGACAATAGAACA 57.265 29.630 0.00 0.00 0.00 3.18
5939 6134 9.736023 ACTTCAAATTTCACAAGACAATAGAAC 57.264 29.630 7.68 0.00 0.00 3.01
5946 6141 9.698309 TGTTTTAACTTCAAATTTCACAAGACA 57.302 25.926 7.68 0.83 0.00 3.41
5947 6142 9.952341 GTGTTTTAACTTCAAATTTCACAAGAC 57.048 29.630 7.68 0.00 0.00 3.01
5948 6143 9.698309 TGTGTTTTAACTTCAAATTTCACAAGA 57.302 25.926 7.68 0.00 0.00 3.02
5958 6153 9.743057 CATCCTGTAATGTGTTTTAACTTCAAA 57.257 29.630 0.00 0.00 0.00 2.69
5959 6154 7.865385 GCATCCTGTAATGTGTTTTAACTTCAA 59.135 33.333 0.00 0.00 0.00 2.69
5960 6155 7.013750 TGCATCCTGTAATGTGTTTTAACTTCA 59.986 33.333 0.00 0.00 0.00 3.02
5961 6156 7.367285 TGCATCCTGTAATGTGTTTTAACTTC 58.633 34.615 0.00 0.00 0.00 3.01
5962 6157 7.283625 TGCATCCTGTAATGTGTTTTAACTT 57.716 32.000 0.00 0.00 0.00 2.66
5963 6158 6.892658 TGCATCCTGTAATGTGTTTTAACT 57.107 33.333 0.00 0.00 0.00 2.24
5964 6159 6.089417 GCTTGCATCCTGTAATGTGTTTTAAC 59.911 38.462 0.00 0.00 0.00 2.01
5965 6160 6.015519 AGCTTGCATCCTGTAATGTGTTTTAA 60.016 34.615 0.00 0.00 0.00 1.52
5966 6161 5.476599 AGCTTGCATCCTGTAATGTGTTTTA 59.523 36.000 0.00 0.00 0.00 1.52
5967 6162 4.281688 AGCTTGCATCCTGTAATGTGTTTT 59.718 37.500 0.00 0.00 0.00 2.43
5968 6163 3.828451 AGCTTGCATCCTGTAATGTGTTT 59.172 39.130 0.00 0.00 0.00 2.83
5969 6164 3.424703 AGCTTGCATCCTGTAATGTGTT 58.575 40.909 0.00 0.00 0.00 3.32
5970 6165 3.077484 AGCTTGCATCCTGTAATGTGT 57.923 42.857 0.00 0.00 0.00 3.72
5971 6166 4.818005 TCATAGCTTGCATCCTGTAATGTG 59.182 41.667 0.00 0.00 0.00 3.21
5972 6167 5.039920 TCATAGCTTGCATCCTGTAATGT 57.960 39.130 0.00 0.00 0.00 2.71
5973 6168 6.381481 TTTCATAGCTTGCATCCTGTAATG 57.619 37.500 0.00 0.00 0.00 1.90
5974 6169 7.340232 TCTTTTTCATAGCTTGCATCCTGTAAT 59.660 33.333 0.00 0.00 0.00 1.89
5975 6170 6.658816 TCTTTTTCATAGCTTGCATCCTGTAA 59.341 34.615 0.00 0.00 0.00 2.41
5976 6171 6.094048 GTCTTTTTCATAGCTTGCATCCTGTA 59.906 38.462 0.00 0.00 0.00 2.74
5977 6172 5.012239 TCTTTTTCATAGCTTGCATCCTGT 58.988 37.500 0.00 0.00 0.00 4.00
5978 6173 5.106038 TGTCTTTTTCATAGCTTGCATCCTG 60.106 40.000 0.00 0.00 0.00 3.86
5979 6174 5.012239 TGTCTTTTTCATAGCTTGCATCCT 58.988 37.500 0.00 0.00 0.00 3.24
5980 6175 5.314923 TGTCTTTTTCATAGCTTGCATCC 57.685 39.130 0.00 0.00 0.00 3.51
5981 6176 7.823149 ATTTGTCTTTTTCATAGCTTGCATC 57.177 32.000 0.00 0.00 0.00 3.91
5982 6177 7.874016 TGAATTTGTCTTTTTCATAGCTTGCAT 59.126 29.630 0.00 0.00 0.00 3.96
5983 6178 7.208777 TGAATTTGTCTTTTTCATAGCTTGCA 58.791 30.769 0.00 0.00 0.00 4.08
5984 6179 7.620806 GCTGAATTTGTCTTTTTCATAGCTTGC 60.621 37.037 0.00 0.00 0.00 4.01
5985 6180 7.383029 TGCTGAATTTGTCTTTTTCATAGCTTG 59.617 33.333 0.00 0.00 0.00 4.01
5986 6181 7.436118 TGCTGAATTTGTCTTTTTCATAGCTT 58.564 30.769 0.00 0.00 0.00 3.74
5987 6182 6.985117 TGCTGAATTTGTCTTTTTCATAGCT 58.015 32.000 0.00 0.00 0.00 3.32
5988 6183 7.642071 TTGCTGAATTTGTCTTTTTCATAGC 57.358 32.000 0.00 0.00 0.00 2.97
5989 6184 9.414295 TCATTGCTGAATTTGTCTTTTTCATAG 57.586 29.630 0.00 0.00 0.00 2.23
5990 6185 9.761504 TTCATTGCTGAATTTGTCTTTTTCATA 57.238 25.926 0.00 0.00 36.46 2.15
5991 6186 8.665643 TTCATTGCTGAATTTGTCTTTTTCAT 57.334 26.923 0.00 0.00 36.46 2.57
6002 6197 8.051583 GTGCTGTCACTATTCATTGCTGAATTT 61.052 37.037 6.51 0.00 42.66 1.82
6003 6198 6.624423 GTGCTGTCACTATTCATTGCTGAATT 60.624 38.462 6.51 0.00 42.66 2.17
6004 6199 5.163683 GTGCTGTCACTATTCATTGCTGAAT 60.164 40.000 6.45 6.45 42.39 2.57
6005 6200 4.154737 GTGCTGTCACTATTCATTGCTGAA 59.845 41.667 0.00 0.00 41.39 3.02
6006 6201 3.686241 GTGCTGTCACTATTCATTGCTGA 59.314 43.478 0.00 0.00 40.03 4.26
6007 6202 4.012319 GTGCTGTCACTATTCATTGCTG 57.988 45.455 0.00 0.00 40.03 4.41
6025 6220 6.956299 AACAAAATCAGCATTGAATAGTGC 57.044 33.333 0.00 0.00 41.57 4.40
6026 6221 9.199982 AGAAAACAAAATCAGCATTGAATAGTG 57.800 29.630 0.00 0.00 36.78 2.74
6027 6222 9.415544 GAGAAAACAAAATCAGCATTGAATAGT 57.584 29.630 0.00 0.00 36.78 2.12
6028 6223 9.414295 TGAGAAAACAAAATCAGCATTGAATAG 57.586 29.630 0.00 0.00 36.78 1.73
6029 6224 9.932207 ATGAGAAAACAAAATCAGCATTGAATA 57.068 25.926 0.00 0.00 36.78 1.75
6030 6225 8.842358 ATGAGAAAACAAAATCAGCATTGAAT 57.158 26.923 0.00 0.00 36.78 2.57
6031 6226 9.414295 CTATGAGAAAACAAAATCAGCATTGAA 57.586 29.630 0.00 0.00 36.78 2.69
6032 6227 7.543172 GCTATGAGAAAACAAAATCAGCATTGA 59.457 33.333 0.00 0.00 37.81 2.57
6033 6228 7.544566 AGCTATGAGAAAACAAAATCAGCATTG 59.455 33.333 0.00 0.00 0.00 2.82
6034 6229 7.609056 AGCTATGAGAAAACAAAATCAGCATT 58.391 30.769 0.00 0.00 0.00 3.56
6035 6230 7.094075 TGAGCTATGAGAAAACAAAATCAGCAT 60.094 33.333 0.00 0.00 0.00 3.79
6036 6231 6.207221 TGAGCTATGAGAAAACAAAATCAGCA 59.793 34.615 0.00 0.00 0.00 4.41
6037 6232 6.525976 GTGAGCTATGAGAAAACAAAATCAGC 59.474 38.462 0.00 0.00 0.00 4.26
6038 6233 7.587629 TGTGAGCTATGAGAAAACAAAATCAG 58.412 34.615 0.00 0.00 0.00 2.90
6039 6234 7.509141 TGTGAGCTATGAGAAAACAAAATCA 57.491 32.000 0.00 0.00 0.00 2.57
6040 6235 8.457261 AGATGTGAGCTATGAGAAAACAAAATC 58.543 33.333 0.00 0.00 0.00 2.17
6041 6236 8.345724 AGATGTGAGCTATGAGAAAACAAAAT 57.654 30.769 0.00 0.00 0.00 1.82
6042 6237 7.750229 AGATGTGAGCTATGAGAAAACAAAA 57.250 32.000 0.00 0.00 0.00 2.44
6043 6238 7.229306 ACAAGATGTGAGCTATGAGAAAACAAA 59.771 33.333 0.00 0.00 0.00 2.83
6044 6239 6.712095 ACAAGATGTGAGCTATGAGAAAACAA 59.288 34.615 0.00 0.00 0.00 2.83
6045 6240 6.233434 ACAAGATGTGAGCTATGAGAAAACA 58.767 36.000 0.00 0.00 0.00 2.83
6046 6241 6.734104 ACAAGATGTGAGCTATGAGAAAAC 57.266 37.500 0.00 0.00 0.00 2.43
6047 6242 8.886719 CATTACAAGATGTGAGCTATGAGAAAA 58.113 33.333 0.00 0.00 0.00 2.29
6048 6243 8.043113 ACATTACAAGATGTGAGCTATGAGAAA 58.957 33.333 0.00 0.00 38.75 2.52
6049 6244 7.559486 ACATTACAAGATGTGAGCTATGAGAA 58.441 34.615 0.00 0.00 38.75 2.87
6050 6245 7.117285 ACATTACAAGATGTGAGCTATGAGA 57.883 36.000 0.00 0.00 38.75 3.27
6061 6256 7.995289 TCAAGTTCAAACACATTACAAGATGT 58.005 30.769 0.00 0.00 40.76 3.06
6062 6257 8.854979 TTCAAGTTCAAACACATTACAAGATG 57.145 30.769 0.00 0.00 0.00 2.90
6064 6259 9.868277 AATTTCAAGTTCAAACACATTACAAGA 57.132 25.926 0.00 0.00 0.00 3.02
6072 6267 8.930760 CCTTACAAAATTTCAAGTTCAAACACA 58.069 29.630 0.00 0.00 0.00 3.72
6073 6268 7.902917 GCCTTACAAAATTTCAAGTTCAAACAC 59.097 33.333 0.00 0.00 0.00 3.32
6074 6269 7.604164 TGCCTTACAAAATTTCAAGTTCAAACA 59.396 29.630 0.00 0.00 0.00 2.83
6075 6270 7.969314 TGCCTTACAAAATTTCAAGTTCAAAC 58.031 30.769 0.00 0.00 0.00 2.93
6076 6271 8.553459 TTGCCTTACAAAATTTCAAGTTCAAA 57.447 26.923 0.00 0.00 34.56 2.69
6077 6272 8.729805 ATTGCCTTACAAAATTTCAAGTTCAA 57.270 26.923 0.00 3.71 42.86 2.69
6078 6273 9.474920 CTATTGCCTTACAAAATTTCAAGTTCA 57.525 29.630 0.00 0.00 42.86 3.18
6079 6274 9.691362 TCTATTGCCTTACAAAATTTCAAGTTC 57.309 29.630 0.00 0.00 42.86 3.01
6081 6276 9.476202 GTTCTATTGCCTTACAAAATTTCAAGT 57.524 29.630 0.00 0.00 42.86 3.16
6082 6277 9.474920 TGTTCTATTGCCTTACAAAATTTCAAG 57.525 29.630 0.00 0.00 42.86 3.02
6083 6278 9.995003 ATGTTCTATTGCCTTACAAAATTTCAA 57.005 25.926 0.00 0.00 42.86 2.69
6084 6279 9.638239 GATGTTCTATTGCCTTACAAAATTTCA 57.362 29.630 0.00 0.00 42.86 2.69
6085 6280 9.638239 TGATGTTCTATTGCCTTACAAAATTTC 57.362 29.630 0.00 0.00 42.86 2.17
6086 6281 9.423061 GTGATGTTCTATTGCCTTACAAAATTT 57.577 29.630 0.00 0.00 42.86 1.82
6087 6282 8.806146 AGTGATGTTCTATTGCCTTACAAAATT 58.194 29.630 0.00 0.00 42.86 1.82
6088 6283 8.353423 AGTGATGTTCTATTGCCTTACAAAAT 57.647 30.769 0.00 0.00 42.86 1.82
6089 6284 7.360861 CGAGTGATGTTCTATTGCCTTACAAAA 60.361 37.037 0.00 0.00 42.86 2.44
6090 6285 6.092122 CGAGTGATGTTCTATTGCCTTACAAA 59.908 38.462 0.00 0.00 42.86 2.83
6091 6286 5.580691 CGAGTGATGTTCTATTGCCTTACAA 59.419 40.000 0.00 0.00 44.01 2.41
6092 6287 5.109210 CGAGTGATGTTCTATTGCCTTACA 58.891 41.667 0.00 0.00 0.00 2.41
6093 6288 4.508124 CCGAGTGATGTTCTATTGCCTTAC 59.492 45.833 0.00 0.00 0.00 2.34
6094 6289 4.161565 ACCGAGTGATGTTCTATTGCCTTA 59.838 41.667 0.00 0.00 0.00 2.69
6095 6290 3.055094 ACCGAGTGATGTTCTATTGCCTT 60.055 43.478 0.00 0.00 0.00 4.35
6096 6291 2.501723 ACCGAGTGATGTTCTATTGCCT 59.498 45.455 0.00 0.00 0.00 4.75
6097 6292 2.906354 ACCGAGTGATGTTCTATTGCC 58.094 47.619 0.00 0.00 0.00 4.52
6098 6293 5.350365 TGTTAACCGAGTGATGTTCTATTGC 59.650 40.000 2.48 0.00 0.00 3.56
6099 6294 6.961359 TGTTAACCGAGTGATGTTCTATTG 57.039 37.500 2.48 0.00 0.00 1.90
6100 6295 6.761714 GGATGTTAACCGAGTGATGTTCTATT 59.238 38.462 2.48 0.00 0.00 1.73
6101 6296 6.281405 GGATGTTAACCGAGTGATGTTCTAT 58.719 40.000 2.48 0.00 0.00 1.98
6102 6297 5.394883 GGGATGTTAACCGAGTGATGTTCTA 60.395 44.000 2.48 0.00 0.00 2.10
6103 6298 4.504858 GGATGTTAACCGAGTGATGTTCT 58.495 43.478 2.48 0.00 0.00 3.01
6104 6299 3.621715 GGGATGTTAACCGAGTGATGTTC 59.378 47.826 2.48 0.00 0.00 3.18
6105 6300 3.008594 TGGGATGTTAACCGAGTGATGTT 59.991 43.478 2.48 0.00 0.00 2.71
6106 6301 2.569853 TGGGATGTTAACCGAGTGATGT 59.430 45.455 2.48 0.00 0.00 3.06
6107 6302 3.260475 TGGGATGTTAACCGAGTGATG 57.740 47.619 2.48 0.00 0.00 3.07
6108 6303 5.130477 AGTTATGGGATGTTAACCGAGTGAT 59.870 40.000 2.48 0.00 0.00 3.06
6109 6304 4.468510 AGTTATGGGATGTTAACCGAGTGA 59.531 41.667 2.48 0.00 0.00 3.41
6110 6305 4.766375 AGTTATGGGATGTTAACCGAGTG 58.234 43.478 2.48 0.00 0.00 3.51
6111 6306 5.431179 AAGTTATGGGATGTTAACCGAGT 57.569 39.130 2.48 0.00 0.00 4.18
6112 6307 6.753107 AAAAGTTATGGGATGTTAACCGAG 57.247 37.500 2.48 0.00 0.00 4.63
6113 6308 6.715718 TCAAAAAGTTATGGGATGTTAACCGA 59.284 34.615 2.48 0.00 0.00 4.69
6114 6309 6.915349 TCAAAAAGTTATGGGATGTTAACCG 58.085 36.000 2.48 0.00 0.00 4.44
6144 6339 9.980780 GCAAAACAATGCTTAAAAGTTTTCTAA 57.019 25.926 3.60 0.00 43.06 2.10
6145 6340 8.324567 CGCAAAACAATGCTTAAAAGTTTTCTA 58.675 29.630 3.60 0.00 44.21 2.10
6146 6341 7.148490 ACGCAAAACAATGCTTAAAAGTTTTCT 60.148 29.630 3.60 0.00 44.21 2.52
6147 6342 6.958752 ACGCAAAACAATGCTTAAAAGTTTTC 59.041 30.769 3.60 0.00 44.21 2.29
6148 6343 6.740453 CACGCAAAACAATGCTTAAAAGTTTT 59.260 30.769 6.06 6.06 44.21 2.43
6149 6344 6.247176 CACGCAAAACAATGCTTAAAAGTTT 58.753 32.000 0.00 0.00 44.21 2.66
6150 6345 5.220567 CCACGCAAAACAATGCTTAAAAGTT 60.221 36.000 0.00 0.00 44.21 2.66
6151 6346 4.269844 CCACGCAAAACAATGCTTAAAAGT 59.730 37.500 0.00 0.00 44.21 2.66
6152 6347 4.269844 ACCACGCAAAACAATGCTTAAAAG 59.730 37.500 0.00 0.00 44.21 2.27
6153 6348 4.184629 ACCACGCAAAACAATGCTTAAAA 58.815 34.783 0.00 0.00 44.21 1.52
6154 6349 3.786635 ACCACGCAAAACAATGCTTAAA 58.213 36.364 0.00 0.00 44.21 1.52
6155 6350 3.444703 ACCACGCAAAACAATGCTTAA 57.555 38.095 0.00 0.00 44.21 1.85
6156 6351 3.444703 AACCACGCAAAACAATGCTTA 57.555 38.095 0.00 0.00 44.21 3.09
6157 6352 2.307934 AACCACGCAAAACAATGCTT 57.692 40.000 0.00 0.00 44.21 3.91
6158 6353 2.307934 AAACCACGCAAAACAATGCT 57.692 40.000 0.00 0.00 44.21 3.79
6159 6354 2.349886 TGAAAACCACGCAAAACAATGC 59.650 40.909 0.00 0.00 42.94 3.56
6160 6355 3.242252 GGTGAAAACCACGCAAAACAATG 60.242 43.478 0.00 0.00 46.62 2.82
6161 6356 2.933260 GGTGAAAACCACGCAAAACAAT 59.067 40.909 0.00 0.00 46.62 2.71
6162 6357 2.028930 AGGTGAAAACCACGCAAAACAA 60.029 40.909 0.00 0.00 46.62 2.83
6163 6358 1.546476 AGGTGAAAACCACGCAAAACA 59.454 42.857 0.00 0.00 46.62 2.83
6164 6359 1.923864 CAGGTGAAAACCACGCAAAAC 59.076 47.619 0.00 0.00 46.62 2.43
6165 6360 1.546476 ACAGGTGAAAACCACGCAAAA 59.454 42.857 0.00 0.00 46.62 2.44
6166 6361 1.178276 ACAGGTGAAAACCACGCAAA 58.822 45.000 0.00 0.00 46.62 3.68
6167 6362 2.039818 TACAGGTGAAAACCACGCAA 57.960 45.000 0.00 0.00 46.62 4.85
6168 6363 2.039818 TTACAGGTGAAAACCACGCA 57.960 45.000 0.00 0.00 46.62 5.24
6169 6364 2.920647 GCATTACAGGTGAAAACCACGC 60.921 50.000 0.00 0.00 46.62 5.34
6170 6365 2.552315 AGCATTACAGGTGAAAACCACG 59.448 45.455 0.00 0.00 46.62 4.94
6171 6366 4.202111 ACAAGCATTACAGGTGAAAACCAC 60.202 41.667 0.00 0.00 44.95 4.16
6172 6367 3.957497 ACAAGCATTACAGGTGAAAACCA 59.043 39.130 0.00 0.00 0.00 3.67
6173 6368 4.584327 ACAAGCATTACAGGTGAAAACC 57.416 40.909 0.00 0.00 0.00 3.27
6174 6369 6.533367 TGAAAACAAGCATTACAGGTGAAAAC 59.467 34.615 0.00 0.00 0.00 2.43
6175 6370 6.634805 TGAAAACAAGCATTACAGGTGAAAA 58.365 32.000 0.00 0.00 0.00 2.29
6176 6371 6.214191 TGAAAACAAGCATTACAGGTGAAA 57.786 33.333 0.00 0.00 0.00 2.69
6177 6372 5.843673 TGAAAACAAGCATTACAGGTGAA 57.156 34.783 0.00 0.00 0.00 3.18
6178 6373 7.392953 TCATATGAAAACAAGCATTACAGGTGA 59.607 33.333 1.98 0.00 0.00 4.02
6179 6374 7.537715 TCATATGAAAACAAGCATTACAGGTG 58.462 34.615 1.98 0.00 0.00 4.00
6180 6375 7.701539 TCATATGAAAACAAGCATTACAGGT 57.298 32.000 1.98 0.00 0.00 4.00
6188 6383 9.368674 CCACAAAATATCATATGAAAACAAGCA 57.631 29.630 9.99 0.00 0.00 3.91
6189 6384 9.585099 TCCACAAAATATCATATGAAAACAAGC 57.415 29.630 9.99 0.00 0.00 4.01
6191 6386 9.585099 GCTCCACAAAATATCATATGAAAACAA 57.415 29.630 9.99 0.00 0.00 2.83
6192 6387 8.747471 TGCTCCACAAAATATCATATGAAAACA 58.253 29.630 9.99 0.00 0.00 2.83
6193 6388 9.241317 CTGCTCCACAAAATATCATATGAAAAC 57.759 33.333 9.99 0.00 0.00 2.43
6194 6389 8.415553 CCTGCTCCACAAAATATCATATGAAAA 58.584 33.333 9.99 1.34 0.00 2.29
6195 6390 7.560991 ACCTGCTCCACAAAATATCATATGAAA 59.439 33.333 9.99 0.00 0.00 2.69
6196 6391 7.062322 ACCTGCTCCACAAAATATCATATGAA 58.938 34.615 9.99 0.00 0.00 2.57
6197 6392 6.604171 ACCTGCTCCACAAAATATCATATGA 58.396 36.000 8.10 8.10 0.00 2.15
6198 6393 6.889301 ACCTGCTCCACAAAATATCATATG 57.111 37.500 0.00 0.00 0.00 1.78
6199 6394 7.342799 ACAAACCTGCTCCACAAAATATCATAT 59.657 33.333 0.00 0.00 0.00 1.78
6200 6395 6.663093 ACAAACCTGCTCCACAAAATATCATA 59.337 34.615 0.00 0.00 0.00 2.15
6201 6396 5.481473 ACAAACCTGCTCCACAAAATATCAT 59.519 36.000 0.00 0.00 0.00 2.45
6202 6397 4.832266 ACAAACCTGCTCCACAAAATATCA 59.168 37.500 0.00 0.00 0.00 2.15
6203 6398 5.163513 CACAAACCTGCTCCACAAAATATC 58.836 41.667 0.00 0.00 0.00 1.63
6204 6399 4.588528 ACACAAACCTGCTCCACAAAATAT 59.411 37.500 0.00 0.00 0.00 1.28
6205 6400 3.957497 ACACAAACCTGCTCCACAAAATA 59.043 39.130 0.00 0.00 0.00 1.40
6206 6401 2.765699 ACACAAACCTGCTCCACAAAAT 59.234 40.909 0.00 0.00 0.00 1.82
6207 6402 2.175202 ACACAAACCTGCTCCACAAAA 58.825 42.857 0.00 0.00 0.00 2.44
6208 6403 1.846007 ACACAAACCTGCTCCACAAA 58.154 45.000 0.00 0.00 0.00 2.83
6209 6404 1.476085 CAACACAAACCTGCTCCACAA 59.524 47.619 0.00 0.00 0.00 3.33
6210 6405 1.102154 CAACACAAACCTGCTCCACA 58.898 50.000 0.00 0.00 0.00 4.17
6211 6406 0.249031 GCAACACAAACCTGCTCCAC 60.249 55.000 0.00 0.00 33.20 4.02
6212 6407 1.723608 CGCAACACAAACCTGCTCCA 61.724 55.000 0.00 0.00 33.82 3.86
6213 6408 1.008538 CGCAACACAAACCTGCTCC 60.009 57.895 0.00 0.00 33.82 4.70
6214 6409 0.592247 CACGCAACACAAACCTGCTC 60.592 55.000 0.00 0.00 33.82 4.26
6215 6410 1.433064 CACGCAACACAAACCTGCT 59.567 52.632 0.00 0.00 33.82 4.24
6216 6411 1.588667 CCACGCAACACAAACCTGC 60.589 57.895 0.00 0.00 0.00 4.85
6217 6412 1.065600 CCCACGCAACACAAACCTG 59.934 57.895 0.00 0.00 0.00 4.00
6218 6413 2.781158 GCCCACGCAACACAAACCT 61.781 57.895 0.00 0.00 34.03 3.50
6219 6414 1.448922 TAGCCCACGCAACACAAACC 61.449 55.000 0.00 0.00 37.52 3.27
6220 6415 0.596082 ATAGCCCACGCAACACAAAC 59.404 50.000 0.00 0.00 37.52 2.93
6221 6416 1.000827 CAATAGCCCACGCAACACAAA 60.001 47.619 0.00 0.00 37.52 2.83
6222 6417 0.595588 CAATAGCCCACGCAACACAA 59.404 50.000 0.00 0.00 37.52 3.33
6223 6418 1.861542 GCAATAGCCCACGCAACACA 61.862 55.000 0.00 0.00 37.52 3.72
6224 6419 1.154035 GCAATAGCCCACGCAACAC 60.154 57.895 0.00 0.00 37.52 3.32
6225 6420 3.273048 GCAATAGCCCACGCAACA 58.727 55.556 0.00 0.00 37.52 3.33
6235 6430 3.308866 ACGAAAATAGACACGGCAATAGC 59.691 43.478 0.00 0.00 41.10 2.97
6236 6431 4.260212 CCACGAAAATAGACACGGCAATAG 60.260 45.833 0.00 0.00 0.00 1.73
6237 6432 3.619483 CCACGAAAATAGACACGGCAATA 59.381 43.478 0.00 0.00 0.00 1.90
6238 6433 2.418628 CCACGAAAATAGACACGGCAAT 59.581 45.455 0.00 0.00 0.00 3.56
6239 6434 1.801771 CCACGAAAATAGACACGGCAA 59.198 47.619 0.00 0.00 0.00 4.52
6240 6435 1.270412 ACCACGAAAATAGACACGGCA 60.270 47.619 0.00 0.00 0.00 5.69
6241 6436 1.435577 ACCACGAAAATAGACACGGC 58.564 50.000 0.00 0.00 0.00 5.68
6242 6437 4.100707 TCTACCACGAAAATAGACACGG 57.899 45.455 0.00 0.00 0.00 4.94
6243 6438 6.237755 GGATTTCTACCACGAAAATAGACACG 60.238 42.308 0.00 0.00 36.57 4.49
6244 6439 6.036844 GGGATTTCTACCACGAAAATAGACAC 59.963 42.308 0.00 0.00 36.57 3.67
6245 6440 6.110707 GGGATTTCTACCACGAAAATAGACA 58.889 40.000 0.00 0.00 36.57 3.41
6246 6441 6.600246 GGGATTTCTACCACGAAAATAGAC 57.400 41.667 0.00 0.00 36.57 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.