Multiple sequence alignment - TraesCS2B01G599100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G599100 chr2B 100.000 4759 0 0 1 4759 781808816 781804058 0.000000e+00 8789.0
1 TraesCS2B01G599100 chr2B 84.904 1464 174 25 1207 2639 781829042 781827595 0.000000e+00 1435.0
2 TraesCS2B01G599100 chr2B 85.946 1046 131 8 1605 2639 781796194 781795154 0.000000e+00 1103.0
3 TraesCS2B01G599100 chr2B 85.792 549 55 15 2802 3337 781827556 781827018 1.160000e-155 560.0
4 TraesCS2B01G599100 chr2B 88.528 462 42 9 2844 3296 781795117 781794658 2.500000e-152 549.0
5 TraesCS2B01G599100 chr2B 93.846 130 8 0 4630 4759 781793412 781793283 3.760000e-46 196.0
6 TraesCS2B01G599100 chr2B 86.607 112 15 0 4624 4735 784276567 784276456 1.800000e-24 124.0
7 TraesCS2B01G599100 chrUn 92.532 1781 92 22 933 2701 31327800 31326049 0.000000e+00 2514.0
8 TraesCS2B01G599100 chrUn 86.207 1044 131 7 1605 2639 31313027 31311988 0.000000e+00 1118.0
9 TraesCS2B01G599100 chrUn 96.112 643 18 5 2694 3332 31326027 31325388 0.000000e+00 1042.0
10 TraesCS2B01G599100 chrUn 85.823 924 119 11 1723 2639 31371289 31370371 0.000000e+00 970.0
11 TraesCS2B01G599100 chrUn 85.654 955 56 36 3859 4759 31324565 31323638 0.000000e+00 929.0
12 TraesCS2B01G599100 chrUn 92.170 613 38 5 286 896 31328498 31327894 0.000000e+00 857.0
13 TraesCS2B01G599100 chrUn 89.074 540 46 7 2801 3337 31370331 31369802 0.000000e+00 658.0
14 TraesCS2B01G599100 chrUn 87.078 503 51 9 2844 3337 31311954 31311457 1.500000e-154 556.0
15 TraesCS2B01G599100 chrUn 84.211 380 28 16 4390 4759 31309806 31309449 1.640000e-89 340.0
16 TraesCS2B01G599100 chrUn 96.907 97 3 0 1 97 182450795 182450891 3.810000e-36 163.0
17 TraesCS2B01G599100 chrUn 96.907 97 3 0 1 97 237098706 237098610 3.810000e-36 163.0
18 TraesCS2B01G599100 chrUn 96.907 97 3 0 1 97 281717910 281717814 3.810000e-36 163.0
19 TraesCS2B01G599100 chrUn 91.011 89 8 0 4623 4711 31088698 31088786 2.330000e-23 121.0
20 TraesCS2B01G599100 chr2D 93.739 1661 71 16 1057 2701 648101904 648103547 0.000000e+00 2460.0
21 TraesCS2B01G599100 chr2D 86.731 1040 125 6 1606 2636 648120745 648121780 0.000000e+00 1144.0
22 TraesCS2B01G599100 chr2D 95.639 642 19 6 2695 3332 648103628 648104264 0.000000e+00 1022.0
23 TraesCS2B01G599100 chr2D 85.803 965 57 42 3859 4756 648111522 648112473 0.000000e+00 950.0
24 TraesCS2B01G599100 chr2D 88.800 500 44 8 2844 3337 648121817 648122310 1.890000e-168 603.0
25 TraesCS2B01G599100 chr2D 89.231 130 11 1 4630 4759 648123452 648123578 4.930000e-35 159.0
26 TraesCS2B01G599100 chr2D 90.816 98 9 0 4624 4721 648355297 648355200 1.070000e-26 132.0
27 TraesCS2B01G599100 chr2D 78.125 192 31 10 97 287 441593588 441593769 1.400000e-20 111.0
28 TraesCS2B01G599100 chr6A 85.432 556 69 6 286 830 600806628 600807182 6.910000e-158 568.0
29 TraesCS2B01G599100 chr6A 96.907 97 3 0 1 97 9657606 9657702 3.810000e-36 163.0
30 TraesCS2B01G599100 chr4A 77.953 762 147 18 1760 2506 615099581 615100336 1.560000e-124 457.0
31 TraesCS2B01G599100 chr4A 77.034 762 153 19 1760 2506 615081652 615082406 7.370000e-113 418.0
32 TraesCS2B01G599100 chr7D 81.136 493 65 18 1535 2006 489903802 489903317 2.090000e-98 370.0
33 TraesCS2B01G599100 chr7D 88.000 200 15 1 97 287 550979917 550979718 1.330000e-55 228.0
34 TraesCS2B01G599100 chr3D 89.604 202 12 1 97 289 385702977 385703178 1.020000e-61 248.0
35 TraesCS2B01G599100 chr4D 89.000 200 13 1 97 287 314583953 314583754 6.160000e-59 239.0
36 TraesCS2B01G599100 chr4D 88.500 200 14 3 97 287 454667195 454666996 2.860000e-57 233.0
37 TraesCS2B01G599100 chr4D 96.907 97 3 0 1 97 123471575 123471671 3.810000e-36 163.0
38 TraesCS2B01G599100 chr4D 96.907 97 3 0 1 97 450995051 450994955 3.810000e-36 163.0
39 TraesCS2B01G599100 chr1D 88.038 209 15 4 97 295 245785245 245785037 6.160000e-59 239.0
40 TraesCS2B01G599100 chr1D 86.449 214 18 5 97 299 87218081 87217868 1.720000e-54 224.0
41 TraesCS2B01G599100 chr1D 96.907 97 3 0 1 97 141326345 141326249 3.810000e-36 163.0
42 TraesCS2B01G599100 chr1D 96.907 97 3 0 1 97 351093574 351093478 3.810000e-36 163.0
43 TraesCS2B01G599100 chr7A 88.614 202 14 1 97 289 547571508 547571709 2.210000e-58 237.0
44 TraesCS2B01G599100 chr7A 88.144 194 22 1 97 289 481165381 481165574 3.700000e-56 230.0
45 TraesCS2B01G599100 chr7B 86.765 204 18 3 97 291 467962132 467962335 8.020000e-53 219.0
46 TraesCS2B01G599100 chr7B 86.473 207 17 3 97 292 227972923 227972717 2.880000e-52 217.0
47 TraesCS2B01G599100 chr5D 85.922 206 19 5 97 292 248965975 248965770 1.340000e-50 211.0
48 TraesCS2B01G599100 chr5D 85.238 210 21 4 97 297 549921472 549921264 1.740000e-49 207.0
49 TraesCS2B01G599100 chr5D 86.010 193 24 3 97 287 55050535 55050726 2.250000e-48 204.0
50 TraesCS2B01G599100 chr5D 85.149 202 21 3 97 289 527893454 527893655 1.040000e-46 198.0
51 TraesCS2B01G599100 chr5D 84.186 215 20 9 97 297 104449721 104449935 3.760000e-46 196.0
52 TraesCS2B01G599100 chr5D 80.220 182 31 4 3151 3331 6712219 6712042 1.070000e-26 132.0
53 TraesCS2B01G599100 chr5D 78.218 202 34 7 97 293 364378074 364378270 2.330000e-23 121.0
54 TraesCS2B01G599100 chr5A 85.787 197 24 3 97 289 297582508 297582312 6.240000e-49 206.0
55 TraesCS2B01G599100 chr6B 84.259 216 20 6 97 302 440582971 440582760 1.040000e-46 198.0
56 TraesCS2B01G599100 chr6B 97.938 97 2 0 1 97 388232717 388232621 8.190000e-38 169.0
57 TraesCS2B01G599100 chr6B 80.311 193 27 10 100 287 60226719 60226533 8.310000e-28 135.0
58 TraesCS2B01G599100 chr3B 88.415 164 18 1 136 298 107132322 107132159 3.760000e-46 196.0
59 TraesCS2B01G599100 chr5B 83.810 210 25 3 97 297 529975545 529975336 1.750000e-44 191.0
60 TraesCS2B01G599100 chr1B 82.353 204 22 11 110 301 430344280 430344079 1.060000e-36 165.0
61 TraesCS2B01G599100 chr6D 93.023 43 1 1 92 134 453963297 453963337 1.430000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G599100 chr2B 781804058 781808816 4758 True 8789.000000 8789 100.0000 1 4759 1 chr2B.!!$R1 4758
1 TraesCS2B01G599100 chr2B 781827018 781829042 2024 True 997.500000 1435 85.3480 1207 3337 2 chr2B.!!$R4 2130
2 TraesCS2B01G599100 chr2B 781793283 781796194 2911 True 616.000000 1103 89.4400 1605 4759 3 chr2B.!!$R3 3154
3 TraesCS2B01G599100 chrUn 31323638 31328498 4860 True 1335.500000 2514 91.6170 286 4759 4 chrUn.!!$R4 4473
4 TraesCS2B01G599100 chrUn 31369802 31371289 1487 True 814.000000 970 87.4485 1723 3337 2 chrUn.!!$R5 1614
5 TraesCS2B01G599100 chrUn 31309449 31313027 3578 True 671.333333 1118 85.8320 1605 4759 3 chrUn.!!$R3 3154
6 TraesCS2B01G599100 chr2D 648101904 648104264 2360 False 1741.000000 2460 94.6890 1057 3332 2 chr2D.!!$F3 2275
7 TraesCS2B01G599100 chr2D 648111522 648112473 951 False 950.000000 950 85.8030 3859 4756 1 chr2D.!!$F2 897
8 TraesCS2B01G599100 chr2D 648120745 648123578 2833 False 635.333333 1144 88.2540 1606 4759 3 chr2D.!!$F4 3153
9 TraesCS2B01G599100 chr6A 600806628 600807182 554 False 568.000000 568 85.4320 286 830 1 chr6A.!!$F2 544
10 TraesCS2B01G599100 chr4A 615099581 615100336 755 False 457.000000 457 77.9530 1760 2506 1 chr4A.!!$F2 746
11 TraesCS2B01G599100 chr4A 615081652 615082406 754 False 418.000000 418 77.0340 1760 2506 1 chr4A.!!$F1 746

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
653 663 0.316772 GCGACATATTGCAGCAGCTG 60.317 55.0 18.93 18.93 42.74 4.24 F
1094 1175 0.107017 CCACTCCCATGTCCCATCAC 60.107 60.0 0.00 0.00 0.00 3.06 F
1095 1176 0.462581 CACTCCCATGTCCCATCACG 60.463 60.0 0.00 0.00 0.00 4.35 F
2610 2750 0.664761 CGCCATTGCATGAGGTAAGG 59.335 55.0 0.00 0.00 37.32 2.69 F
3426 3668 0.039798 CTCATGTTGTGCCTGTGTGC 60.040 55.0 0.00 0.00 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2010 2135 0.514691 CGAACTTCTCCAGCTTGCAC 59.485 55.000 0.00 0.0 0.00 4.57 R
2198 2326 1.004918 AGGTGCCGAGAAGGAAACG 60.005 57.895 0.00 0.0 41.59 3.60 R
2942 3172 1.629861 TCAGCAGTCATGACCCAATCA 59.370 47.619 22.21 0.0 43.13 2.57 R
3505 3837 0.512952 CTTTTCTCAGCCGTTGTCCG 59.487 55.000 0.00 0.0 0.00 4.79 R
4702 6126 1.349259 CCACCGCGACTAAACCTTCG 61.349 60.000 8.23 0.0 38.31 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.829064 TTTGTTCGATAGCAAGCAAACT 57.171 36.364 0.00 0.00 0.00 2.66
23 24 4.404507 TTGTTCGATAGCAAGCAAACTC 57.595 40.909 0.00 0.00 0.00 3.01
24 25 3.664107 TGTTCGATAGCAAGCAAACTCT 58.336 40.909 0.00 0.00 0.00 3.24
25 26 3.679980 TGTTCGATAGCAAGCAAACTCTC 59.320 43.478 0.00 0.00 0.00 3.20
26 27 2.893637 TCGATAGCAAGCAAACTCTCC 58.106 47.619 0.00 0.00 0.00 3.71
27 28 1.936547 CGATAGCAAGCAAACTCTCCC 59.063 52.381 0.00 0.00 0.00 4.30
28 29 2.677902 CGATAGCAAGCAAACTCTCCCA 60.678 50.000 0.00 0.00 0.00 4.37
29 30 2.949177 TAGCAAGCAAACTCTCCCAA 57.051 45.000 0.00 0.00 0.00 4.12
30 31 2.299326 AGCAAGCAAACTCTCCCAAT 57.701 45.000 0.00 0.00 0.00 3.16
31 32 2.601905 AGCAAGCAAACTCTCCCAATT 58.398 42.857 0.00 0.00 0.00 2.32
32 33 2.967887 AGCAAGCAAACTCTCCCAATTT 59.032 40.909 0.00 0.00 0.00 1.82
33 34 4.151883 AGCAAGCAAACTCTCCCAATTTA 58.848 39.130 0.00 0.00 0.00 1.40
34 35 4.219288 AGCAAGCAAACTCTCCCAATTTAG 59.781 41.667 0.00 0.00 0.00 1.85
35 36 4.619160 GCAAGCAAACTCTCCCAATTTAGG 60.619 45.833 0.00 0.00 0.00 2.69
36 37 4.657814 AGCAAACTCTCCCAATTTAGGA 57.342 40.909 0.00 0.00 0.00 2.94
37 38 4.336280 AGCAAACTCTCCCAATTTAGGAC 58.664 43.478 0.00 0.00 0.00 3.85
38 39 3.444034 GCAAACTCTCCCAATTTAGGACC 59.556 47.826 0.00 0.00 0.00 4.46
39 40 4.811063 GCAAACTCTCCCAATTTAGGACCT 60.811 45.833 0.00 0.00 0.00 3.85
40 41 5.325239 CAAACTCTCCCAATTTAGGACCTT 58.675 41.667 0.00 0.00 0.00 3.50
41 42 4.846168 ACTCTCCCAATTTAGGACCTTC 57.154 45.455 0.00 0.00 0.00 3.46
42 43 4.175962 ACTCTCCCAATTTAGGACCTTCA 58.824 43.478 0.00 0.00 0.00 3.02
43 44 4.226168 ACTCTCCCAATTTAGGACCTTCAG 59.774 45.833 0.00 0.00 0.00 3.02
44 45 4.175962 TCTCCCAATTTAGGACCTTCAGT 58.824 43.478 0.00 0.00 0.00 3.41
45 46 4.019321 TCTCCCAATTTAGGACCTTCAGTG 60.019 45.833 0.00 0.00 0.00 3.66
46 47 3.913799 TCCCAATTTAGGACCTTCAGTGA 59.086 43.478 0.00 0.00 0.00 3.41
47 48 4.540099 TCCCAATTTAGGACCTTCAGTGAT 59.460 41.667 0.00 0.00 0.00 3.06
48 49 4.884164 CCCAATTTAGGACCTTCAGTGATC 59.116 45.833 0.00 0.00 0.00 2.92
49 50 5.339530 CCCAATTTAGGACCTTCAGTGATCT 60.340 44.000 0.00 0.00 0.00 2.75
50 51 6.183347 CCAATTTAGGACCTTCAGTGATCTT 58.817 40.000 0.00 0.00 0.00 2.40
51 52 7.338710 CCAATTTAGGACCTTCAGTGATCTTA 58.661 38.462 0.00 0.00 0.00 2.10
52 53 7.281100 CCAATTTAGGACCTTCAGTGATCTTAC 59.719 40.741 0.00 0.00 0.00 2.34
53 54 6.928348 TTTAGGACCTTCAGTGATCTTACA 57.072 37.500 0.00 0.00 0.00 2.41
54 55 6.928348 TTAGGACCTTCAGTGATCTTACAA 57.072 37.500 0.00 0.00 0.00 2.41
55 56 5.153950 AGGACCTTCAGTGATCTTACAAC 57.846 43.478 0.00 0.00 0.00 3.32
56 57 3.927142 GGACCTTCAGTGATCTTACAACG 59.073 47.826 0.00 0.00 0.00 4.10
57 58 4.321750 GGACCTTCAGTGATCTTACAACGA 60.322 45.833 0.00 0.00 0.00 3.85
58 59 5.209818 ACCTTCAGTGATCTTACAACGAA 57.790 39.130 0.00 0.00 0.00 3.85
59 60 4.989168 ACCTTCAGTGATCTTACAACGAAC 59.011 41.667 0.00 0.00 0.00 3.95
60 61 4.988540 CCTTCAGTGATCTTACAACGAACA 59.011 41.667 0.00 0.00 0.00 3.18
61 62 5.639506 CCTTCAGTGATCTTACAACGAACAT 59.360 40.000 0.00 0.00 0.00 2.71
62 63 6.147821 CCTTCAGTGATCTTACAACGAACATT 59.852 38.462 0.00 0.00 0.00 2.71
63 64 6.466308 TCAGTGATCTTACAACGAACATTG 57.534 37.500 0.00 0.00 35.59 2.82
64 65 5.989168 TCAGTGATCTTACAACGAACATTGT 59.011 36.000 0.00 0.00 44.87 2.71
65 66 7.149307 TCAGTGATCTTACAACGAACATTGTA 58.851 34.615 0.00 0.00 42.73 2.41
87 88 8.726650 TGTAAATGACAATCAACGAATTCTTG 57.273 30.769 3.52 7.46 34.15 3.02
88 89 8.349245 TGTAAATGACAATCAACGAATTCTTGT 58.651 29.630 9.13 9.13 34.15 3.16
89 90 7.627585 AAATGACAATCAACGAATTCTTGTG 57.372 32.000 13.05 9.38 30.63 3.33
90 91 6.558771 ATGACAATCAACGAATTCTTGTGA 57.441 33.333 13.05 9.17 30.63 3.58
91 92 6.370433 TGACAATCAACGAATTCTTGTGAA 57.630 33.333 13.05 1.69 36.54 3.18
92 93 6.790282 TGACAATCAACGAATTCTTGTGAAA 58.210 32.000 13.05 0.00 35.63 2.69
93 94 7.424803 TGACAATCAACGAATTCTTGTGAAAT 58.575 30.769 13.05 1.95 35.63 2.17
94 95 8.563732 TGACAATCAACGAATTCTTGTGAAATA 58.436 29.630 13.05 0.00 35.63 1.40
95 96 8.955061 ACAATCAACGAATTCTTGTGAAATAG 57.045 30.769 8.70 2.83 35.63 1.73
96 97 8.783093 ACAATCAACGAATTCTTGTGAAATAGA 58.217 29.630 8.70 0.00 35.63 1.98
97 98 9.778993 CAATCAACGAATTCTTGTGAAATAGAT 57.221 29.630 3.52 0.00 35.63 1.98
103 104 9.383519 ACGAATTCTTGTGAAATAGATATGTGT 57.616 29.630 3.52 0.00 35.63 3.72
118 119 7.953158 AGATATGTGTAGTATCATGCAACAC 57.047 36.000 8.32 8.32 40.61 3.32
119 120 7.730084 AGATATGTGTAGTATCATGCAACACT 58.270 34.615 14.68 7.40 40.78 3.55
120 121 8.206867 AGATATGTGTAGTATCATGCAACACTT 58.793 33.333 14.68 11.45 40.78 3.16
121 122 6.668541 ATGTGTAGTATCATGCAACACTTC 57.331 37.500 14.68 4.31 40.78 3.01
122 123 5.546526 TGTGTAGTATCATGCAACACTTCA 58.453 37.500 14.68 6.42 40.78 3.02
123 124 6.172630 TGTGTAGTATCATGCAACACTTCAT 58.827 36.000 14.68 0.00 40.78 2.57
124 125 6.654582 TGTGTAGTATCATGCAACACTTCATT 59.345 34.615 14.68 0.00 40.78 2.57
125 126 7.174772 TGTGTAGTATCATGCAACACTTCATTT 59.825 33.333 14.68 0.00 40.78 2.32
126 127 8.664798 GTGTAGTATCATGCAACACTTCATTTA 58.335 33.333 8.05 0.00 37.92 1.40
127 128 9.394767 TGTAGTATCATGCAACACTTCATTTAT 57.605 29.630 0.00 0.00 0.00 1.40
131 132 9.669353 GTATCATGCAACACTTCATTTATTAGG 57.331 33.333 0.00 0.00 0.00 2.69
132 133 7.701539 TCATGCAACACTTCATTTATTAGGT 57.298 32.000 0.00 0.00 0.00 3.08
133 134 8.121305 TCATGCAACACTTCATTTATTAGGTT 57.879 30.769 0.00 0.00 0.00 3.50
134 135 8.584157 TCATGCAACACTTCATTTATTAGGTTT 58.416 29.630 0.00 0.00 0.00 3.27
135 136 8.863049 CATGCAACACTTCATTTATTAGGTTTC 58.137 33.333 0.00 0.00 0.00 2.78
136 137 8.177119 TGCAACACTTCATTTATTAGGTTTCT 57.823 30.769 0.00 0.00 0.00 2.52
137 138 8.637986 TGCAACACTTCATTTATTAGGTTTCTT 58.362 29.630 0.00 0.00 0.00 2.52
138 139 8.915654 GCAACACTTCATTTATTAGGTTTCTTG 58.084 33.333 0.00 0.00 0.00 3.02
139 140 8.915654 CAACACTTCATTTATTAGGTTTCTTGC 58.084 33.333 0.00 0.00 0.00 4.01
140 141 7.602753 ACACTTCATTTATTAGGTTTCTTGCC 58.397 34.615 0.00 0.00 0.00 4.52
141 142 7.451566 ACACTTCATTTATTAGGTTTCTTGCCT 59.548 33.333 0.00 0.00 40.00 4.75
142 143 8.306761 CACTTCATTTATTAGGTTTCTTGCCTT 58.693 33.333 0.00 0.00 37.54 4.35
143 144 8.306761 ACTTCATTTATTAGGTTTCTTGCCTTG 58.693 33.333 0.00 0.00 37.54 3.61
144 145 7.169158 TCATTTATTAGGTTTCTTGCCTTGG 57.831 36.000 0.00 0.00 37.54 3.61
145 146 6.723977 TCATTTATTAGGTTTCTTGCCTTGGT 59.276 34.615 0.00 0.00 37.54 3.67
146 147 7.891183 TCATTTATTAGGTTTCTTGCCTTGGTA 59.109 33.333 0.00 0.00 37.54 3.25
147 148 8.695456 CATTTATTAGGTTTCTTGCCTTGGTAT 58.305 33.333 0.00 0.00 37.54 2.73
148 149 7.639113 TTATTAGGTTTCTTGCCTTGGTATG 57.361 36.000 0.00 0.00 37.54 2.39
149 150 3.525800 AGGTTTCTTGCCTTGGTATGT 57.474 42.857 0.00 0.00 31.04 2.29
150 151 3.157087 AGGTTTCTTGCCTTGGTATGTG 58.843 45.455 0.00 0.00 31.04 3.21
151 152 2.890945 GGTTTCTTGCCTTGGTATGTGT 59.109 45.455 0.00 0.00 0.00 3.72
152 153 4.076394 GGTTTCTTGCCTTGGTATGTGTA 58.924 43.478 0.00 0.00 0.00 2.90
153 154 4.521256 GGTTTCTTGCCTTGGTATGTGTAA 59.479 41.667 0.00 0.00 0.00 2.41
154 155 5.185056 GGTTTCTTGCCTTGGTATGTGTAAT 59.815 40.000 0.00 0.00 0.00 1.89
155 156 5.895636 TTCTTGCCTTGGTATGTGTAATG 57.104 39.130 0.00 0.00 0.00 1.90
156 157 4.917385 TCTTGCCTTGGTATGTGTAATGT 58.083 39.130 0.00 0.00 0.00 2.71
157 158 4.941263 TCTTGCCTTGGTATGTGTAATGTC 59.059 41.667 0.00 0.00 0.00 3.06
158 159 4.293662 TGCCTTGGTATGTGTAATGTCA 57.706 40.909 0.00 0.00 0.00 3.58
159 160 4.006989 TGCCTTGGTATGTGTAATGTCAC 58.993 43.478 0.00 0.00 38.63 3.67
160 161 4.261801 GCCTTGGTATGTGTAATGTCACT 58.738 43.478 0.00 0.00 38.90 3.41
161 162 4.332819 GCCTTGGTATGTGTAATGTCACTC 59.667 45.833 0.00 0.00 38.90 3.51
162 163 5.487433 CCTTGGTATGTGTAATGTCACTCA 58.513 41.667 0.00 0.00 38.90 3.41
163 164 6.115446 CCTTGGTATGTGTAATGTCACTCAT 58.885 40.000 0.00 0.00 38.90 2.90
164 165 7.272244 CCTTGGTATGTGTAATGTCACTCATA 58.728 38.462 0.00 0.00 38.90 2.15
165 166 7.224753 CCTTGGTATGTGTAATGTCACTCATAC 59.775 40.741 15.15 15.15 45.93 2.39
166 167 7.418337 TGGTATGTGTAATGTCACTCATACT 57.582 36.000 19.55 0.00 45.92 2.12
167 168 8.528044 TGGTATGTGTAATGTCACTCATACTA 57.472 34.615 19.55 14.66 45.92 1.82
168 169 8.410912 TGGTATGTGTAATGTCACTCATACTAC 58.589 37.037 19.55 10.48 45.92 2.73
169 170 8.630917 GGTATGTGTAATGTCACTCATACTACT 58.369 37.037 19.55 0.00 45.92 2.57
172 173 8.803397 TGTGTAATGTCACTCATACTACTAGT 57.197 34.615 0.00 0.00 38.90 2.57
173 174 9.895138 TGTGTAATGTCACTCATACTACTAGTA 57.105 33.333 1.89 1.89 38.90 1.82
179 180 8.659925 TGTCACTCATACTACTAGTAACTAGC 57.340 38.462 3.76 0.00 37.57 3.42
180 181 8.484575 TGTCACTCATACTACTAGTAACTAGCT 58.515 37.037 3.76 0.00 37.57 3.32
181 182 9.979578 GTCACTCATACTACTAGTAACTAGCTA 57.020 37.037 3.76 0.00 37.57 3.32
190 191 9.336171 ACTACTAGTAACTAGCTATGTTACCAC 57.664 37.037 25.92 14.94 46.31 4.16
191 192 9.334947 CTACTAGTAACTAGCTATGTTACCACA 57.665 37.037 25.92 17.51 46.31 4.17
192 193 8.763984 ACTAGTAACTAGCTATGTTACCACAT 57.236 34.615 25.92 17.43 46.31 3.21
193 194 8.630917 ACTAGTAACTAGCTATGTTACCACATG 58.369 37.037 25.92 18.73 46.31 3.21
194 195 6.281405 AGTAACTAGCTATGTTACCACATGC 58.719 40.000 25.92 11.98 46.31 4.06
195 196 4.073293 ACTAGCTATGTTACCACATGCC 57.927 45.455 0.00 0.00 43.92 4.40
196 197 3.711704 ACTAGCTATGTTACCACATGCCT 59.288 43.478 0.00 0.00 43.92 4.75
197 198 3.199880 AGCTATGTTACCACATGCCTC 57.800 47.619 0.00 0.00 43.92 4.70
198 199 2.774234 AGCTATGTTACCACATGCCTCT 59.226 45.455 0.00 0.00 43.92 3.69
199 200 3.134458 GCTATGTTACCACATGCCTCTC 58.866 50.000 0.00 0.00 43.92 3.20
200 201 3.181461 GCTATGTTACCACATGCCTCTCT 60.181 47.826 0.00 0.00 43.92 3.10
201 202 4.684485 GCTATGTTACCACATGCCTCTCTT 60.684 45.833 0.00 0.00 43.92 2.85
202 203 3.788227 TGTTACCACATGCCTCTCTTT 57.212 42.857 0.00 0.00 0.00 2.52
203 204 3.674997 TGTTACCACATGCCTCTCTTTC 58.325 45.455 0.00 0.00 0.00 2.62
204 205 3.327757 TGTTACCACATGCCTCTCTTTCT 59.672 43.478 0.00 0.00 0.00 2.52
205 206 4.202461 TGTTACCACATGCCTCTCTTTCTT 60.202 41.667 0.00 0.00 0.00 2.52
206 207 3.515602 ACCACATGCCTCTCTTTCTTT 57.484 42.857 0.00 0.00 0.00 2.52
207 208 4.640771 ACCACATGCCTCTCTTTCTTTA 57.359 40.909 0.00 0.00 0.00 1.85
208 209 5.184892 ACCACATGCCTCTCTTTCTTTAT 57.815 39.130 0.00 0.00 0.00 1.40
209 210 5.574188 ACCACATGCCTCTCTTTCTTTATT 58.426 37.500 0.00 0.00 0.00 1.40
210 211 6.721318 ACCACATGCCTCTCTTTCTTTATTA 58.279 36.000 0.00 0.00 0.00 0.98
211 212 7.175104 ACCACATGCCTCTCTTTCTTTATTAA 58.825 34.615 0.00 0.00 0.00 1.40
212 213 7.836183 ACCACATGCCTCTCTTTCTTTATTAAT 59.164 33.333 0.00 0.00 0.00 1.40
213 214 8.689972 CCACATGCCTCTCTTTCTTTATTAATT 58.310 33.333 0.00 0.00 0.00 1.40
214 215 9.512435 CACATGCCTCTCTTTCTTTATTAATTG 57.488 33.333 0.00 0.00 0.00 2.32
215 216 8.193438 ACATGCCTCTCTTTCTTTATTAATTGC 58.807 33.333 0.00 0.00 0.00 3.56
216 217 7.944729 TGCCTCTCTTTCTTTATTAATTGCT 57.055 32.000 0.00 0.00 0.00 3.91
217 218 8.353423 TGCCTCTCTTTCTTTATTAATTGCTT 57.647 30.769 0.00 0.00 0.00 3.91
218 219 8.246180 TGCCTCTCTTTCTTTATTAATTGCTTG 58.754 33.333 0.00 0.00 0.00 4.01
219 220 7.221645 GCCTCTCTTTCTTTATTAATTGCTTGC 59.778 37.037 0.00 0.00 0.00 4.01
220 221 7.704047 CCTCTCTTTCTTTATTAATTGCTTGCC 59.296 37.037 0.00 0.00 0.00 4.52
221 222 8.121305 TCTCTTTCTTTATTAATTGCTTGCCA 57.879 30.769 0.00 0.00 0.00 4.92
222 223 8.028938 TCTCTTTCTTTATTAATTGCTTGCCAC 58.971 33.333 0.00 0.00 0.00 5.01
223 224 7.665690 TCTTTCTTTATTAATTGCTTGCCACA 58.334 30.769 0.00 0.00 0.00 4.17
224 225 8.313292 TCTTTCTTTATTAATTGCTTGCCACAT 58.687 29.630 0.00 0.00 0.00 3.21
225 226 8.477984 TTTCTTTATTAATTGCTTGCCACATC 57.522 30.769 0.00 0.00 0.00 3.06
226 227 7.167924 TCTTTATTAATTGCTTGCCACATCA 57.832 32.000 0.00 0.00 0.00 3.07
227 228 7.784037 TCTTTATTAATTGCTTGCCACATCAT 58.216 30.769 0.00 0.00 0.00 2.45
228 229 7.922278 TCTTTATTAATTGCTTGCCACATCATC 59.078 33.333 0.00 0.00 0.00 2.92
229 230 5.864418 ATTAATTGCTTGCCACATCATCT 57.136 34.783 0.00 0.00 0.00 2.90
230 231 6.964807 ATTAATTGCTTGCCACATCATCTA 57.035 33.333 0.00 0.00 0.00 1.98
231 232 6.964807 TTAATTGCTTGCCACATCATCTAT 57.035 33.333 0.00 0.00 0.00 1.98
232 233 5.864418 AATTGCTTGCCACATCATCTATT 57.136 34.783 0.00 0.00 0.00 1.73
233 234 5.864418 ATTGCTTGCCACATCATCTATTT 57.136 34.783 0.00 0.00 0.00 1.40
234 235 5.664294 TTGCTTGCCACATCATCTATTTT 57.336 34.783 0.00 0.00 0.00 1.82
235 236 6.772360 TTGCTTGCCACATCATCTATTTTA 57.228 33.333 0.00 0.00 0.00 1.52
236 237 6.964807 TGCTTGCCACATCATCTATTTTAT 57.035 33.333 0.00 0.00 0.00 1.40
237 238 6.973843 TGCTTGCCACATCATCTATTTTATC 58.026 36.000 0.00 0.00 0.00 1.75
238 239 6.774170 TGCTTGCCACATCATCTATTTTATCT 59.226 34.615 0.00 0.00 0.00 1.98
239 240 7.938490 TGCTTGCCACATCATCTATTTTATCTA 59.062 33.333 0.00 0.00 0.00 1.98
240 241 8.449397 GCTTGCCACATCATCTATTTTATCTAG 58.551 37.037 0.00 0.00 0.00 2.43
241 242 9.716531 CTTGCCACATCATCTATTTTATCTAGA 57.283 33.333 0.00 0.00 0.00 2.43
259 260 9.875691 TTATCTAGATATATGTGATGTTGGCAC 57.124 33.333 13.22 0.00 36.81 5.01
260 261 6.701340 TCTAGATATATGTGATGTTGGCACC 58.299 40.000 0.00 0.00 35.43 5.01
261 262 5.573380 AGATATATGTGATGTTGGCACCT 57.427 39.130 0.00 0.00 35.43 4.00
262 263 6.686484 AGATATATGTGATGTTGGCACCTA 57.314 37.500 0.00 0.00 35.43 3.08
263 264 7.262990 AGATATATGTGATGTTGGCACCTAT 57.737 36.000 0.00 0.00 35.43 2.57
264 265 7.108194 AGATATATGTGATGTTGGCACCTATG 58.892 38.462 0.00 0.00 35.43 2.23
265 266 2.877097 TGTGATGTTGGCACCTATGT 57.123 45.000 0.00 0.00 35.43 2.29
266 267 3.153369 TGTGATGTTGGCACCTATGTT 57.847 42.857 0.00 0.00 35.43 2.71
267 268 4.293662 TGTGATGTTGGCACCTATGTTA 57.706 40.909 0.00 0.00 35.43 2.41
268 269 4.006989 TGTGATGTTGGCACCTATGTTAC 58.993 43.478 0.00 0.00 35.43 2.50
269 270 4.261801 GTGATGTTGGCACCTATGTTACT 58.738 43.478 0.00 0.00 0.00 2.24
270 271 4.332819 GTGATGTTGGCACCTATGTTACTC 59.667 45.833 0.00 0.00 0.00 2.59
271 272 4.225042 TGATGTTGGCACCTATGTTACTCT 59.775 41.667 0.00 0.00 0.00 3.24
272 273 4.202245 TGTTGGCACCTATGTTACTCTC 57.798 45.455 0.00 0.00 0.00 3.20
273 274 3.580895 TGTTGGCACCTATGTTACTCTCA 59.419 43.478 0.00 0.00 0.00 3.27
274 275 3.887621 TGGCACCTATGTTACTCTCAC 57.112 47.619 0.00 0.00 0.00 3.51
275 276 3.441101 TGGCACCTATGTTACTCTCACT 58.559 45.455 0.00 0.00 0.00 3.41
276 277 3.195610 TGGCACCTATGTTACTCTCACTG 59.804 47.826 0.00 0.00 0.00 3.66
277 278 3.195825 GGCACCTATGTTACTCTCACTGT 59.804 47.826 0.00 0.00 0.00 3.55
278 279 4.177026 GCACCTATGTTACTCTCACTGTG 58.823 47.826 0.17 0.17 0.00 3.66
279 280 4.748892 CACCTATGTTACTCTCACTGTGG 58.251 47.826 8.11 0.00 0.00 4.17
280 281 3.769844 ACCTATGTTACTCTCACTGTGGG 59.230 47.826 8.11 4.27 0.00 4.61
281 282 3.769844 CCTATGTTACTCTCACTGTGGGT 59.230 47.826 7.67 7.28 0.00 4.51
282 283 4.223032 CCTATGTTACTCTCACTGTGGGTT 59.777 45.833 7.67 0.00 0.00 4.11
283 284 3.469008 TGTTACTCTCACTGTGGGTTG 57.531 47.619 7.67 4.86 0.00 3.77
284 285 2.769663 TGTTACTCTCACTGTGGGTTGT 59.230 45.455 7.67 10.34 0.00 3.32
291 292 3.964688 TCTCACTGTGGGTTGTCTAAAGA 59.035 43.478 7.67 0.00 0.00 2.52
326 327 0.944386 CAACCAAACGTGTCTCCCTG 59.056 55.000 0.00 0.00 0.00 4.45
368 369 4.652822 TCTAGCTAACCTATGAGCATCGA 58.347 43.478 0.00 0.00 41.36 3.59
382 383 1.329906 GCATCGACATTCAAGCCTCTG 59.670 52.381 0.00 0.00 0.00 3.35
490 499 3.958704 TGTAATCAACAACCAGTTTGCG 58.041 40.909 0.00 0.00 38.74 4.85
511 520 1.338020 GTCTGAAGCCACAAAAGGGTG 59.662 52.381 0.00 0.00 39.80 4.61
521 530 3.387699 CCACAAAAGGGTGACAAATTCCT 59.612 43.478 0.00 0.00 41.32 3.36
604 613 2.514458 AGGCCCTGAATAACCAACAG 57.486 50.000 0.00 0.00 0.00 3.16
653 663 0.316772 GCGACATATTGCAGCAGCTG 60.317 55.000 18.93 18.93 42.74 4.24
701 712 3.304257 CCCTGCATCGACATTGAATTAGC 60.304 47.826 0.00 0.00 0.00 3.09
711 722 1.083489 TTGAATTAGCGCACCCTTCG 58.917 50.000 11.47 0.00 0.00 3.79
784 795 2.203153 GTGGCACTGTTGGGACGT 60.203 61.111 11.13 0.00 0.00 4.34
795 806 1.804748 GTTGGGACGTGAATCTGTTCC 59.195 52.381 0.00 0.00 34.07 3.62
812 823 2.182791 CAGCTCGGCGATGTGTCT 59.817 61.111 11.27 0.00 0.00 3.41
814 825 0.867753 CAGCTCGGCGATGTGTCTAC 60.868 60.000 11.27 0.00 0.00 2.59
817 828 0.733150 CTCGGCGATGTGTCTACTCA 59.267 55.000 11.27 0.00 0.00 3.41
818 829 1.335182 CTCGGCGATGTGTCTACTCAT 59.665 52.381 11.27 0.00 33.32 2.90
871 882 5.229887 CCAAACGAACAAATGAGTTGACAAG 59.770 40.000 0.00 0.00 39.87 3.16
880 891 1.694150 TGAGTTGACAAGGGACTCTGG 59.306 52.381 6.58 0.00 38.49 3.86
956 1034 3.130340 GCAGATTTCGAGGCCCAAAATAA 59.870 43.478 0.00 0.00 0.00 1.40
960 1038 5.422012 AGATTTCGAGGCCCAAAATAACAAT 59.578 36.000 0.00 0.00 0.00 2.71
971 1049 4.362279 CAAAATAACAATCCATCGGCCTG 58.638 43.478 0.00 0.00 0.00 4.85
1002 1083 2.040009 GCAGCCCGCTCCCATTACTA 62.040 60.000 0.00 0.00 37.77 1.82
1003 1084 0.687354 CAGCCCGCTCCCATTACTAT 59.313 55.000 0.00 0.00 0.00 2.12
1051 1132 2.119886 CCTCTCCTAACCGCAGAGG 58.880 63.158 0.00 0.00 45.80 3.69
1085 1166 1.147824 CAGCTAGCCCACTCCCATG 59.852 63.158 12.13 0.00 0.00 3.66
1086 1167 1.307343 AGCTAGCCCACTCCCATGT 60.307 57.895 12.13 0.00 0.00 3.21
1088 1169 1.832912 CTAGCCCACTCCCATGTCC 59.167 63.158 0.00 0.00 0.00 4.02
1090 1171 2.484868 TAGCCCACTCCCATGTCCCA 62.485 60.000 0.00 0.00 0.00 4.37
1091 1172 2.693871 GCCCACTCCCATGTCCCAT 61.694 63.158 0.00 0.00 0.00 4.00
1092 1173 1.533711 CCCACTCCCATGTCCCATC 59.466 63.158 0.00 0.00 0.00 3.51
1093 1174 1.281199 CCCACTCCCATGTCCCATCA 61.281 60.000 0.00 0.00 0.00 3.07
1094 1175 0.107017 CCACTCCCATGTCCCATCAC 60.107 60.000 0.00 0.00 0.00 3.06
1095 1176 0.462581 CACTCCCATGTCCCATCACG 60.463 60.000 0.00 0.00 0.00 4.35
1096 1177 1.524621 CTCCCATGTCCCATCACGC 60.525 63.158 0.00 0.00 0.00 5.34
1097 1178 2.516930 CCCATGTCCCATCACGCC 60.517 66.667 0.00 0.00 0.00 5.68
1098 1179 2.896854 CCATGTCCCATCACGCCG 60.897 66.667 0.00 0.00 0.00 6.46
1099 1180 3.576356 CATGTCCCATCACGCCGC 61.576 66.667 0.00 0.00 0.00 6.53
1100 1181 4.856801 ATGTCCCATCACGCCGCC 62.857 66.667 0.00 0.00 0.00 6.13
1145 1226 4.379243 CTCACCGGCTCGCCTGTT 62.379 66.667 0.00 0.00 31.06 3.16
1157 1245 2.125673 CCTGTTGGGCGTCCGTAG 60.126 66.667 0.00 0.00 35.24 3.51
1264 1357 2.220313 GCAGATCTGGGAAGATGAAGC 58.780 52.381 23.89 1.12 0.00 3.86
1275 1368 7.284034 TCTGGGAAGATGAAGCTGAATAAAATC 59.716 37.037 0.00 0.00 0.00 2.17
1307 1407 1.134401 TGCTCCTGCTTATACTGCCAC 60.134 52.381 0.00 0.00 40.48 5.01
1313 1416 3.599343 CTGCTTATACTGCCACTGTCAA 58.401 45.455 0.00 0.00 0.00 3.18
1314 1417 3.334691 TGCTTATACTGCCACTGTCAAC 58.665 45.455 0.00 0.00 0.00 3.18
1326 1429 3.365666 CCACTGTCAACTCATGTTCATGC 60.366 47.826 7.80 0.00 33.52 4.06
1327 1430 3.501062 CACTGTCAACTCATGTTCATGCT 59.499 43.478 7.80 0.00 33.52 3.79
1364 1474 3.249799 TGTCAATTCATGTTCGTGTCACC 59.750 43.478 0.00 0.00 0.00 4.02
1442 1557 3.864243 TGATGCCATTGCTTCCAAATTC 58.136 40.909 2.68 0.00 40.09 2.17
1443 1558 2.367030 TGCCATTGCTTCCAAATTCG 57.633 45.000 0.00 0.00 38.71 3.34
1450 1565 2.945278 TGCTTCCAAATTCGCACATTC 58.055 42.857 0.00 0.00 0.00 2.67
1496 1611 5.366829 TGTTGTGAGATTTGATTGAGCTG 57.633 39.130 0.00 0.00 0.00 4.24
1560 1678 7.354312 AGGATGGTGGTATTTACAGCTTAAAT 58.646 34.615 14.27 14.27 37.25 1.40
1566 1686 7.486870 GGTGGTATTTACAGCTTAAATTTTCCG 59.513 37.037 14.76 0.00 33.78 4.30
1576 1696 7.011857 ACAGCTTAAATTTTCCGCAATTTTTCA 59.988 29.630 0.00 0.00 37.50 2.69
1668 1792 2.738314 GCCAACATGGTTGCTTCAATTC 59.262 45.455 0.00 0.00 40.46 2.17
1763 1888 2.574018 GCCCTTGCCCTTTGTGGAC 61.574 63.158 0.00 0.00 38.35 4.02
1798 1923 2.093890 TGCTTGATGAAATGTCGGCAT 58.906 42.857 0.00 0.00 36.80 4.40
1851 1976 0.893727 GAGGCAACGGGAATGGTGTT 60.894 55.000 0.00 0.00 46.39 3.32
2010 2135 2.864946 CAGCGAAGACTTCATGGATCAG 59.135 50.000 15.36 0.00 0.00 2.90
2154 2282 1.919918 GCCATTATGCACAAAGTTCGC 59.080 47.619 0.00 0.00 0.00 4.70
2172 2300 2.104792 TCGCCTCCTTCATATTTCTGGG 59.895 50.000 0.00 0.00 0.00 4.45
2198 2326 1.135689 CCGTTTGGATAGCACAGCAAC 60.136 52.381 0.00 0.00 37.49 4.17
2322 2450 0.758734 AGCTGGAGTTGTGCAGTGTA 59.241 50.000 0.00 0.00 43.87 2.90
2353 2481 3.637694 TGAGGAGATCTCATCAAGCTCAG 59.362 47.826 31.92 0.00 45.79 3.35
2368 2496 2.027377 AGCTCAGTCAAGGTTCTGGATG 60.027 50.000 0.00 0.00 33.13 3.51
2468 2602 3.258622 GCTGGTGCTATAGTAACTAGGGG 59.741 52.174 16.97 2.87 36.03 4.79
2556 2696 8.147058 ACAGTAATGGATCATCATCTACTTGAC 58.853 37.037 0.00 0.00 0.00 3.18
2610 2750 0.664761 CGCCATTGCATGAGGTAAGG 59.335 55.000 0.00 0.00 37.32 2.69
2615 2755 3.956199 CCATTGCATGAGGTAAGGATGTT 59.044 43.478 0.00 0.00 0.00 2.71
2734 2962 6.801539 TCGAGAGAAAATGTATTTGCTTGT 57.198 33.333 0.00 0.00 35.80 3.16
2773 3001 1.538512 GGTTCAAAGTTAAGGGACGGC 59.461 52.381 0.00 0.00 0.00 5.68
3337 3579 0.306533 GCAAGACCTCGTTCGCAAAA 59.693 50.000 0.00 0.00 0.00 2.44
3339 3581 2.839474 CAAGACCTCGTTCGCAAAATC 58.161 47.619 0.00 0.00 0.00 2.17
3341 3583 0.094730 GACCTCGTTCGCAAAATCGG 59.905 55.000 0.00 0.00 0.00 4.18
3342 3584 1.226018 CCTCGTTCGCAAAATCGGC 60.226 57.895 0.00 0.00 0.00 5.54
3351 3593 2.969443 GCAAAATCGGCGCAGTATAT 57.031 45.000 10.83 0.00 0.00 0.86
3352 3594 2.574322 GCAAAATCGGCGCAGTATATG 58.426 47.619 10.83 5.80 0.00 1.78
3353 3595 2.032030 GCAAAATCGGCGCAGTATATGT 60.032 45.455 10.83 0.00 0.00 2.29
3356 3598 2.649331 ATCGGCGCAGTATATGTACC 57.351 50.000 10.83 0.00 0.00 3.34
3357 3599 0.239082 TCGGCGCAGTATATGTACCG 59.761 55.000 10.83 0.00 45.42 4.02
3360 3602 2.056577 GGCGCAGTATATGTACCGTTC 58.943 52.381 10.83 0.00 0.00 3.95
3361 3603 1.712350 GCGCAGTATATGTACCGTTCG 59.288 52.381 0.30 0.00 0.00 3.95
3362 3604 1.712350 CGCAGTATATGTACCGTTCGC 59.288 52.381 0.00 0.00 0.00 4.70
3364 3606 2.724690 GCAGTATATGTACCGTTCGCTG 59.275 50.000 0.00 0.00 0.00 5.18
3366 3608 4.603985 CAGTATATGTACCGTTCGCTGAA 58.396 43.478 0.00 0.00 0.00 3.02
3368 3610 5.039333 AGTATATGTACCGTTCGCTGAAAC 58.961 41.667 0.00 0.00 0.00 2.78
3370 3612 2.157834 TGTACCGTTCGCTGAAACAT 57.842 45.000 0.00 0.00 0.00 2.71
3372 3614 2.873472 TGTACCGTTCGCTGAAACATTT 59.127 40.909 0.00 0.00 0.00 2.32
3373 3615 3.312973 TGTACCGTTCGCTGAAACATTTT 59.687 39.130 0.00 0.00 0.00 1.82
3374 3616 4.510711 TGTACCGTTCGCTGAAACATTTTA 59.489 37.500 0.00 0.00 0.00 1.52
3376 3618 5.866335 ACCGTTCGCTGAAACATTTTATA 57.134 34.783 0.00 0.00 0.00 0.98
3377 3619 5.864986 ACCGTTCGCTGAAACATTTTATAG 58.135 37.500 0.00 0.00 0.00 1.31
3378 3620 5.163794 ACCGTTCGCTGAAACATTTTATAGG 60.164 40.000 0.00 0.00 0.00 2.57
3379 3621 5.163794 CCGTTCGCTGAAACATTTTATAGGT 60.164 40.000 0.00 0.00 0.00 3.08
3382 3624 7.325097 CGTTCGCTGAAACATTTTATAGGTTTT 59.675 33.333 0.00 0.00 35.08 2.43
3383 3625 8.974408 GTTCGCTGAAACATTTTATAGGTTTTT 58.026 29.630 0.00 0.00 35.08 1.94
3418 3660 7.928908 TTTTATTGTTCTTCTCATGTTGTGC 57.071 32.000 0.00 0.00 0.00 4.57
3419 3661 3.988379 TTGTTCTTCTCATGTTGTGCC 57.012 42.857 0.00 0.00 0.00 5.01
3420 3662 3.213206 TGTTCTTCTCATGTTGTGCCT 57.787 42.857 0.00 0.00 0.00 4.75
3421 3663 2.880268 TGTTCTTCTCATGTTGTGCCTG 59.120 45.455 0.00 0.00 0.00 4.85
3422 3664 2.880890 GTTCTTCTCATGTTGTGCCTGT 59.119 45.455 0.00 0.00 0.00 4.00
3423 3665 2.497138 TCTTCTCATGTTGTGCCTGTG 58.503 47.619 0.00 0.00 0.00 3.66
3424 3666 2.158769 TCTTCTCATGTTGTGCCTGTGT 60.159 45.455 0.00 0.00 0.00 3.72
3425 3667 1.596603 TCTCATGTTGTGCCTGTGTG 58.403 50.000 0.00 0.00 0.00 3.82
3426 3668 0.039798 CTCATGTTGTGCCTGTGTGC 60.040 55.000 0.00 0.00 0.00 4.57
3427 3669 0.750911 TCATGTTGTGCCTGTGTGCA 60.751 50.000 0.00 0.00 39.37 4.57
3428 3670 0.315886 CATGTTGTGCCTGTGTGCAT 59.684 50.000 0.00 0.00 44.30 3.96
3429 3671 0.599558 ATGTTGTGCCTGTGTGCATC 59.400 50.000 0.00 0.00 44.30 3.91
3430 3672 0.750911 TGTTGTGCCTGTGTGCATCA 60.751 50.000 0.00 0.00 44.30 3.07
3431 3673 0.318107 GTTGTGCCTGTGTGCATCAC 60.318 55.000 11.13 11.13 44.30 3.06
3432 3674 0.466007 TTGTGCCTGTGTGCATCACT 60.466 50.000 16.70 0.00 46.27 3.41
3433 3675 0.886043 TGTGCCTGTGTGCATCACTC 60.886 55.000 16.70 9.10 46.27 3.51
3434 3676 0.604780 GTGCCTGTGTGCATCACTCT 60.605 55.000 16.70 0.00 46.27 3.24
3435 3677 0.109153 TGCCTGTGTGCATCACTCTT 59.891 50.000 16.70 0.00 46.27 2.85
3437 3679 1.888215 CCTGTGTGCATCACTCTTGT 58.112 50.000 16.70 0.00 46.27 3.16
3464 3706 1.808945 CAGTGAACTTCAGTCCATGCC 59.191 52.381 0.00 0.00 0.00 4.40
3466 3708 2.107204 AGTGAACTTCAGTCCATGCCTT 59.893 45.455 0.00 0.00 0.00 4.35
3480 3722 2.752322 TGCCTTTGCAGCAACGATGC 62.752 55.000 13.10 10.01 45.81 3.91
3503 3835 2.281761 CCTGGAGCGTTGCCTTGT 60.282 61.111 0.00 0.00 0.00 3.16
3505 3837 2.281484 TGGAGCGTTGCCTTGTCC 60.281 61.111 0.00 0.00 0.00 4.02
3507 3839 3.423154 GAGCGTTGCCTTGTCCGG 61.423 66.667 0.00 0.00 0.00 5.14
3524 3856 0.512952 CGGACAACGGCTGAGAAAAG 59.487 55.000 0.00 0.00 39.42 2.27
3530 3862 2.781945 ACGGCTGAGAAAAGCTTTTG 57.218 45.000 28.42 14.92 43.06 2.44
3536 3868 4.502087 GGCTGAGAAAAGCTTTTGGAATGT 60.502 41.667 28.42 2.95 43.06 2.71
3540 3872 6.042143 TGAGAAAAGCTTTTGGAATGTGAAC 58.958 36.000 28.42 10.09 0.00 3.18
3541 3873 5.976458 AGAAAAGCTTTTGGAATGTGAACA 58.024 33.333 28.42 0.00 0.00 3.18
3562 3894 4.449068 ACATGAGCTTCCGAATTATTAGCG 59.551 41.667 0.00 0.00 36.96 4.26
3567 3899 6.260050 TGAGCTTCCGAATTATTAGCGAATTT 59.740 34.615 0.00 0.00 36.96 1.82
3568 3900 6.430451 AGCTTCCGAATTATTAGCGAATTTG 58.570 36.000 0.00 0.00 36.96 2.32
3571 3903 3.906008 CCGAATTATTAGCGAATTTGCGG 59.094 43.478 12.05 2.59 40.67 5.69
3578 3910 2.631580 GCGAATTTGCGGTTCCCCA 61.632 57.895 0.90 0.00 0.00 4.96
3596 3929 7.606839 GGTTCCCCAGTTATATTAGCTATCAAC 59.393 40.741 0.00 0.00 0.00 3.18
3598 3931 8.135382 TCCCCAGTTATATTAGCTATCAACTC 57.865 38.462 0.00 0.00 0.00 3.01
3619 3952 6.314917 ACTCCCAGTCTTCCACAAAATAAAT 58.685 36.000 0.00 0.00 0.00 1.40
3622 3955 8.893563 TCCCAGTCTTCCACAAAATAAATTAT 57.106 30.769 0.00 0.00 0.00 1.28
3624 3957 8.971073 CCCAGTCTTCCACAAAATAAATTATCT 58.029 33.333 0.00 0.00 0.00 1.98
3628 3961 9.651718 GTCTTCCACAAAATAAATTATCTAGCG 57.348 33.333 0.00 0.00 0.00 4.26
3639 3972 9.765795 AATAAATTATCTAGCGTTTGACTAGCT 57.234 29.630 0.00 0.00 44.24 3.32
3643 3976 7.747155 TTATCTAGCGTTTGACTAGCTATCT 57.253 36.000 0.00 0.00 41.84 1.98
3653 3986 7.742089 CGTTTGACTAGCTATCTTTCAACTTTG 59.258 37.037 0.00 0.00 0.00 2.77
3659 3992 8.097038 ACTAGCTATCTTTCAACTTTGATGTGA 58.903 33.333 0.00 0.00 37.00 3.58
3664 3997 4.523943 TCTTTCAACTTTGATGTGATGGGG 59.476 41.667 0.00 0.00 37.00 4.96
3665 3998 2.806434 TCAACTTTGATGTGATGGGGG 58.194 47.619 0.00 0.00 31.01 5.40
3666 3999 1.205417 CAACTTTGATGTGATGGGGGC 59.795 52.381 0.00 0.00 0.00 5.80
3669 4007 1.901159 CTTTGATGTGATGGGGGCAAA 59.099 47.619 0.00 0.00 0.00 3.68
3684 4022 1.150827 GCAAAAATGAGCAGTTGGCC 58.849 50.000 0.00 0.00 46.50 5.36
3688 4026 1.542492 AAATGAGCAGTTGGCCTCTG 58.458 50.000 19.30 19.30 46.50 3.35
3731 4069 9.665264 CTTTCACTTTGTACATTAAAGAGTTCC 57.335 33.333 11.79 0.00 38.26 3.62
3751 4089 2.549329 CCCTTGTGCTTTTGGAAAATGC 59.451 45.455 4.22 4.22 0.00 3.56
3754 4295 4.276431 CCTTGTGCTTTTGGAAAATGCATT 59.724 37.500 5.99 5.99 35.83 3.56
3769 4310 3.990959 TGCATTACTGATGTGTGGGTA 57.009 42.857 0.00 0.00 38.07 3.69
3771 4312 4.854173 TGCATTACTGATGTGTGGGTAAT 58.146 39.130 0.00 0.00 38.07 1.89
3776 4317 7.063308 GCATTACTGATGTGTGGGTAATTTTTG 59.937 37.037 0.00 0.00 38.07 2.44
3803 4810 3.928727 AACACATGCAAGACCTCATTG 57.071 42.857 0.00 0.00 0.00 2.82
3809 4816 2.927553 GCAAGACCTCATTGCGAATT 57.072 45.000 0.00 0.00 43.15 2.17
3812 4819 4.346129 GCAAGACCTCATTGCGAATTTAG 58.654 43.478 0.00 0.00 43.15 1.85
3823 4830 3.466836 TGCGAATTTAGCTATCCAGTGG 58.533 45.455 1.40 1.40 35.28 4.00
3824 4831 2.224314 GCGAATTTAGCTATCCAGTGGC 59.776 50.000 3.51 0.00 33.92 5.01
3832 4839 1.414181 GCTATCCAGTGGCTAAGAGCA 59.586 52.381 3.51 0.00 44.75 4.26
3836 4843 8.901676 AGCTATCCAGTGGCTAAGAGCATCTA 62.902 46.154 15.91 0.00 43.84 1.98
3855 4975 8.806146 AGCATCTACAACCTGAATTTACAATTT 58.194 29.630 0.00 0.00 0.00 1.82
3890 5135 9.623000 TTATAGGTTATAAGGGAAGAAAACAGC 57.377 33.333 0.00 0.00 0.00 4.40
3891 5136 4.941873 AGGTTATAAGGGAAGAAAACAGCG 59.058 41.667 0.00 0.00 0.00 5.18
3908 5180 2.095461 AGCGACTGAATAGCTCACTGA 58.905 47.619 0.00 0.00 33.30 3.41
3938 5210 3.764434 CAGAGCTCTACTTCAACCACCTA 59.236 47.826 17.75 0.00 0.00 3.08
3942 5237 3.685272 GCTCTACTTCAACCACCTAAAGC 59.315 47.826 0.00 0.00 0.00 3.51
3944 5239 5.298989 TCTACTTCAACCACCTAAAGCAA 57.701 39.130 0.00 0.00 0.00 3.91
3974 5271 9.948964 TCACAAGATATTTTTCAAGAGAGATGA 57.051 29.630 0.00 0.00 0.00 2.92
3982 5279 7.969536 TTTTTCAAGAGAGATGAACTACAGG 57.030 36.000 0.00 0.00 36.57 4.00
3983 5280 5.667539 TTCAAGAGAGATGAACTACAGGG 57.332 43.478 0.00 0.00 32.10 4.45
3985 5282 4.952957 TCAAGAGAGATGAACTACAGGGAG 59.047 45.833 0.00 0.00 0.00 4.30
3986 5283 4.871871 AGAGAGATGAACTACAGGGAGA 57.128 45.455 0.00 0.00 0.00 3.71
3997 5294 6.043938 TGAACTACAGGGAGAAAAATGTAGGT 59.956 38.462 13.88 8.49 46.18 3.08
4034 5331 5.683876 ACTTAGGAGAGCTAGAATTGCAA 57.316 39.130 0.00 0.00 0.00 4.08
4058 5355 3.679361 GCTGATTGGGCAATGCAAACATA 60.679 43.478 7.79 0.00 34.62 2.29
4178 5522 9.520204 CAAATATCTTCACTCAAACACAAAACT 57.480 29.630 0.00 0.00 0.00 2.66
4179 5523 9.520204 AAATATCTTCACTCAAACACAAAACTG 57.480 29.630 0.00 0.00 0.00 3.16
4182 5526 2.822561 TCACTCAAACACAAAACTGGCA 59.177 40.909 0.00 0.00 0.00 4.92
4286 5686 4.397420 ACAGAATACATCACACCAGCAAA 58.603 39.130 0.00 0.00 0.00 3.68
4524 5942 6.201425 CCAAATGATGCTAATTAACACATGGC 59.799 38.462 0.00 0.00 0.00 4.40
4722 6146 0.320160 GAAGGTTTAGTCGCGGTGGT 60.320 55.000 6.13 0.00 0.00 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.182001 AGAGTTTGCTTGCTATCGAACAAAT 59.818 36.000 5.19 0.00 30.59 2.32
1 2 4.515191 AGAGTTTGCTTGCTATCGAACAAA 59.485 37.500 5.19 0.00 0.00 2.83
2 3 4.065088 AGAGTTTGCTTGCTATCGAACAA 58.935 39.130 5.19 0.00 0.00 2.83
3 4 3.664107 AGAGTTTGCTTGCTATCGAACA 58.336 40.909 5.19 0.00 0.00 3.18
4 5 3.062774 GGAGAGTTTGCTTGCTATCGAAC 59.937 47.826 0.00 0.00 0.00 3.95
5 6 3.262420 GGAGAGTTTGCTTGCTATCGAA 58.738 45.455 0.00 0.00 0.00 3.71
6 7 2.418746 GGGAGAGTTTGCTTGCTATCGA 60.419 50.000 0.00 0.00 0.00 3.59
7 8 1.936547 GGGAGAGTTTGCTTGCTATCG 59.063 52.381 0.00 0.00 0.00 2.92
8 9 2.991250 TGGGAGAGTTTGCTTGCTATC 58.009 47.619 0.00 0.00 0.00 2.08
9 10 3.439857 TTGGGAGAGTTTGCTTGCTAT 57.560 42.857 0.00 0.00 0.00 2.97
10 11 2.949177 TTGGGAGAGTTTGCTTGCTA 57.051 45.000 0.00 0.00 0.00 3.49
11 12 2.299326 ATTGGGAGAGTTTGCTTGCT 57.701 45.000 0.00 0.00 0.00 3.91
12 13 3.391506 AAATTGGGAGAGTTTGCTTGC 57.608 42.857 0.00 0.00 0.00 4.01
13 14 4.766891 TCCTAAATTGGGAGAGTTTGCTTG 59.233 41.667 0.00 0.00 0.00 4.01
14 15 4.767409 GTCCTAAATTGGGAGAGTTTGCTT 59.233 41.667 0.00 0.00 33.04 3.91
15 16 4.336280 GTCCTAAATTGGGAGAGTTTGCT 58.664 43.478 0.00 0.00 33.04 3.91
16 17 3.444034 GGTCCTAAATTGGGAGAGTTTGC 59.556 47.826 0.00 0.00 33.04 3.68
17 18 4.923415 AGGTCCTAAATTGGGAGAGTTTG 58.077 43.478 0.00 0.00 33.04 2.93
18 19 5.074515 TGAAGGTCCTAAATTGGGAGAGTTT 59.925 40.000 0.00 0.00 33.04 2.66
19 20 4.601857 TGAAGGTCCTAAATTGGGAGAGTT 59.398 41.667 0.00 0.00 33.04 3.01
20 21 4.175962 TGAAGGTCCTAAATTGGGAGAGT 58.824 43.478 0.00 0.00 33.04 3.24
21 22 4.226168 ACTGAAGGTCCTAAATTGGGAGAG 59.774 45.833 0.00 0.00 33.04 3.20
22 23 4.019321 CACTGAAGGTCCTAAATTGGGAGA 60.019 45.833 0.00 0.00 33.04 3.71
23 24 4.019321 TCACTGAAGGTCCTAAATTGGGAG 60.019 45.833 0.00 0.00 33.04 4.30
24 25 3.913799 TCACTGAAGGTCCTAAATTGGGA 59.086 43.478 0.00 0.00 0.00 4.37
25 26 4.301072 TCACTGAAGGTCCTAAATTGGG 57.699 45.455 0.00 0.00 0.00 4.12
26 27 5.749462 AGATCACTGAAGGTCCTAAATTGG 58.251 41.667 0.00 0.00 0.00 3.16
27 28 7.824289 TGTAAGATCACTGAAGGTCCTAAATTG 59.176 37.037 0.00 0.00 0.00 2.32
28 29 7.918076 TGTAAGATCACTGAAGGTCCTAAATT 58.082 34.615 0.00 0.00 0.00 1.82
29 30 7.496346 TGTAAGATCACTGAAGGTCCTAAAT 57.504 36.000 0.00 0.00 0.00 1.40
30 31 6.928348 TGTAAGATCACTGAAGGTCCTAAA 57.072 37.500 0.00 0.00 0.00 1.85
31 32 6.571731 CGTTGTAAGATCACTGAAGGTCCTAA 60.572 42.308 0.00 0.00 0.00 2.69
32 33 5.105877 CGTTGTAAGATCACTGAAGGTCCTA 60.106 44.000 0.00 0.00 0.00 2.94
33 34 4.322049 CGTTGTAAGATCACTGAAGGTCCT 60.322 45.833 0.00 0.00 0.00 3.85
34 35 3.927142 CGTTGTAAGATCACTGAAGGTCC 59.073 47.826 0.00 0.00 0.00 4.46
35 36 4.806330 TCGTTGTAAGATCACTGAAGGTC 58.194 43.478 0.00 0.00 0.00 3.85
36 37 4.866508 TCGTTGTAAGATCACTGAAGGT 57.133 40.909 0.00 0.00 0.00 3.50
37 38 4.988540 TGTTCGTTGTAAGATCACTGAAGG 59.011 41.667 0.00 0.00 0.00 3.46
38 39 6.712241 ATGTTCGTTGTAAGATCACTGAAG 57.288 37.500 0.00 0.00 0.00 3.02
39 40 6.481976 ACAATGTTCGTTGTAAGATCACTGAA 59.518 34.615 8.40 0.00 40.35 3.02
40 41 5.989168 ACAATGTTCGTTGTAAGATCACTGA 59.011 36.000 8.40 0.00 40.35 3.41
41 42 6.228273 ACAATGTTCGTTGTAAGATCACTG 57.772 37.500 8.40 0.00 40.35 3.66
42 43 7.956420 TTACAATGTTCGTTGTAAGATCACT 57.044 32.000 19.77 0.00 44.95 3.41
62 63 8.349245 ACAAGAATTCGTTGATTGTCATTTACA 58.651 29.630 18.50 0.00 35.88 2.41
63 64 8.629986 CACAAGAATTCGTTGATTGTCATTTAC 58.370 33.333 18.50 0.00 32.01 2.01
64 65 8.563732 TCACAAGAATTCGTTGATTGTCATTTA 58.436 29.630 18.50 0.00 32.01 1.40
65 66 7.424803 TCACAAGAATTCGTTGATTGTCATTT 58.575 30.769 18.50 0.00 32.01 2.32
66 67 6.969366 TCACAAGAATTCGTTGATTGTCATT 58.031 32.000 18.50 0.00 32.01 2.57
67 68 6.558771 TCACAAGAATTCGTTGATTGTCAT 57.441 33.333 18.50 0.00 32.01 3.06
68 69 6.370433 TTCACAAGAATTCGTTGATTGTCA 57.630 33.333 18.50 1.91 32.01 3.58
69 70 7.858052 ATTTCACAAGAATTCGTTGATTGTC 57.142 32.000 18.50 0.00 32.01 3.18
70 71 8.783093 TCTATTTCACAAGAATTCGTTGATTGT 58.217 29.630 18.50 12.32 34.56 2.71
71 72 9.778993 ATCTATTTCACAAGAATTCGTTGATTG 57.221 29.630 18.50 11.80 32.89 2.67
77 78 9.383519 ACACATATCTATTTCACAAGAATTCGT 57.616 29.630 0.00 0.00 32.89 3.85
92 93 9.645059 GTGTTGCATGATACTACACATATCTAT 57.355 33.333 10.02 0.00 41.45 1.98
93 94 8.860088 AGTGTTGCATGATACTACACATATCTA 58.140 33.333 15.74 0.00 43.34 1.98
94 95 7.730084 AGTGTTGCATGATACTACACATATCT 58.270 34.615 15.74 0.00 43.34 1.98
95 96 7.953158 AGTGTTGCATGATACTACACATATC 57.047 36.000 15.74 0.00 43.34 1.63
96 97 7.986889 TGAAGTGTTGCATGATACTACACATAT 59.013 33.333 15.74 4.04 43.34 1.78
97 98 7.327214 TGAAGTGTTGCATGATACTACACATA 58.673 34.615 15.74 1.77 43.34 2.29
98 99 6.172630 TGAAGTGTTGCATGATACTACACAT 58.827 36.000 15.74 5.81 43.34 3.21
99 100 5.546526 TGAAGTGTTGCATGATACTACACA 58.453 37.500 15.74 0.00 43.34 3.72
100 101 6.668541 ATGAAGTGTTGCATGATACTACAC 57.331 37.500 7.36 7.36 41.91 2.90
101 102 7.686438 AAATGAAGTGTTGCATGATACTACA 57.314 32.000 0.00 0.00 0.00 2.74
105 106 9.669353 CCTAATAAATGAAGTGTTGCATGATAC 57.331 33.333 0.00 0.00 0.00 2.24
106 107 9.407380 ACCTAATAAATGAAGTGTTGCATGATA 57.593 29.630 0.00 0.00 0.00 2.15
107 108 8.297470 ACCTAATAAATGAAGTGTTGCATGAT 57.703 30.769 0.00 0.00 0.00 2.45
108 109 7.701539 ACCTAATAAATGAAGTGTTGCATGA 57.298 32.000 0.00 0.00 0.00 3.07
109 110 8.761575 AAACCTAATAAATGAAGTGTTGCATG 57.238 30.769 0.00 0.00 0.00 4.06
110 111 8.806146 AGAAACCTAATAAATGAAGTGTTGCAT 58.194 29.630 0.00 0.00 0.00 3.96
111 112 8.177119 AGAAACCTAATAAATGAAGTGTTGCA 57.823 30.769 0.00 0.00 0.00 4.08
112 113 8.915654 CAAGAAACCTAATAAATGAAGTGTTGC 58.084 33.333 0.00 0.00 0.00 4.17
113 114 8.915654 GCAAGAAACCTAATAAATGAAGTGTTG 58.084 33.333 0.00 0.00 0.00 3.33
114 115 8.088365 GGCAAGAAACCTAATAAATGAAGTGTT 58.912 33.333 0.00 0.00 0.00 3.32
115 116 7.451566 AGGCAAGAAACCTAATAAATGAAGTGT 59.548 33.333 0.00 0.00 35.10 3.55
116 117 7.830739 AGGCAAGAAACCTAATAAATGAAGTG 58.169 34.615 0.00 0.00 35.10 3.16
117 118 8.306761 CAAGGCAAGAAACCTAATAAATGAAGT 58.693 33.333 0.00 0.00 36.14 3.01
118 119 7.761249 CCAAGGCAAGAAACCTAATAAATGAAG 59.239 37.037 0.00 0.00 36.14 3.02
119 120 7.234577 ACCAAGGCAAGAAACCTAATAAATGAA 59.765 33.333 0.00 0.00 36.14 2.57
120 121 6.723977 ACCAAGGCAAGAAACCTAATAAATGA 59.276 34.615 0.00 0.00 36.14 2.57
121 122 6.935167 ACCAAGGCAAGAAACCTAATAAATG 58.065 36.000 0.00 0.00 36.14 2.32
122 123 8.695456 CATACCAAGGCAAGAAACCTAATAAAT 58.305 33.333 0.00 0.00 36.14 1.40
123 124 7.672239 ACATACCAAGGCAAGAAACCTAATAAA 59.328 33.333 0.00 0.00 36.14 1.40
124 125 7.122055 CACATACCAAGGCAAGAAACCTAATAA 59.878 37.037 0.00 0.00 36.14 1.40
125 126 6.601613 CACATACCAAGGCAAGAAACCTAATA 59.398 38.462 0.00 0.00 36.14 0.98
126 127 5.418840 CACATACCAAGGCAAGAAACCTAAT 59.581 40.000 0.00 0.00 36.14 1.73
127 128 4.764823 CACATACCAAGGCAAGAAACCTAA 59.235 41.667 0.00 0.00 36.14 2.69
128 129 4.202524 ACACATACCAAGGCAAGAAACCTA 60.203 41.667 0.00 0.00 36.14 3.08
129 130 3.157087 CACATACCAAGGCAAGAAACCT 58.843 45.455 0.00 0.00 40.02 3.50
130 131 2.890945 ACACATACCAAGGCAAGAAACC 59.109 45.455 0.00 0.00 0.00 3.27
131 132 5.699097 TTACACATACCAAGGCAAGAAAC 57.301 39.130 0.00 0.00 0.00 2.78
132 133 5.772672 ACATTACACATACCAAGGCAAGAAA 59.227 36.000 0.00 0.00 0.00 2.52
133 134 5.321102 ACATTACACATACCAAGGCAAGAA 58.679 37.500 0.00 0.00 0.00 2.52
134 135 4.917385 ACATTACACATACCAAGGCAAGA 58.083 39.130 0.00 0.00 0.00 3.02
135 136 4.699735 TGACATTACACATACCAAGGCAAG 59.300 41.667 0.00 0.00 0.00 4.01
136 137 4.457603 GTGACATTACACATACCAAGGCAA 59.542 41.667 0.00 0.00 40.11 4.52
137 138 4.006989 GTGACATTACACATACCAAGGCA 58.993 43.478 0.00 0.00 40.11 4.75
138 139 4.261801 AGTGACATTACACATACCAAGGC 58.738 43.478 0.00 0.00 42.45 4.35
139 140 5.487433 TGAGTGACATTACACATACCAAGG 58.513 41.667 0.00 0.00 42.45 3.61
140 141 7.981789 AGTATGAGTGACATTACACATACCAAG 59.018 37.037 15.73 0.00 46.81 3.61
141 142 7.847096 AGTATGAGTGACATTACACATACCAA 58.153 34.615 15.73 0.00 46.81 3.67
142 143 7.418337 AGTATGAGTGACATTACACATACCA 57.582 36.000 15.73 3.49 46.81 3.25
143 144 8.630917 AGTAGTATGAGTGACATTACACATACC 58.369 37.037 15.73 6.63 46.81 2.73
146 147 9.409918 ACTAGTAGTATGAGTGACATTACACAT 57.590 33.333 0.00 0.00 42.45 3.21
147 148 8.803397 ACTAGTAGTATGAGTGACATTACACA 57.197 34.615 0.00 0.00 42.45 3.72
153 154 9.275398 GCTAGTTACTAGTAGTATGAGTGACAT 57.725 37.037 19.12 0.00 38.28 3.06
154 155 8.484575 AGCTAGTTACTAGTAGTATGAGTGACA 58.515 37.037 19.12 0.00 36.53 3.58
155 156 8.891671 AGCTAGTTACTAGTAGTATGAGTGAC 57.108 38.462 19.12 5.34 36.53 3.67
183 184 3.944087 AGAAAGAGAGGCATGTGGTAAC 58.056 45.455 0.00 0.00 0.00 2.50
184 185 4.640771 AAGAAAGAGAGGCATGTGGTAA 57.359 40.909 0.00 0.00 0.00 2.85
185 186 4.640771 AAAGAAAGAGAGGCATGTGGTA 57.359 40.909 0.00 0.00 0.00 3.25
186 187 3.515602 AAAGAAAGAGAGGCATGTGGT 57.484 42.857 0.00 0.00 0.00 4.16
187 188 7.630242 TTAATAAAGAAAGAGAGGCATGTGG 57.370 36.000 0.00 0.00 0.00 4.17
188 189 9.512435 CAATTAATAAAGAAAGAGAGGCATGTG 57.488 33.333 0.00 0.00 0.00 3.21
189 190 8.193438 GCAATTAATAAAGAAAGAGAGGCATGT 58.807 33.333 0.00 0.00 0.00 3.21
190 191 8.411683 AGCAATTAATAAAGAAAGAGAGGCATG 58.588 33.333 0.00 0.00 0.00 4.06
191 192 8.530804 AGCAATTAATAAAGAAAGAGAGGCAT 57.469 30.769 0.00 0.00 0.00 4.40
192 193 7.944729 AGCAATTAATAAAGAAAGAGAGGCA 57.055 32.000 0.00 0.00 0.00 4.75
193 194 7.221645 GCAAGCAATTAATAAAGAAAGAGAGGC 59.778 37.037 0.00 0.00 0.00 4.70
194 195 7.704047 GGCAAGCAATTAATAAAGAAAGAGAGG 59.296 37.037 0.00 0.00 0.00 3.69
195 196 8.246180 TGGCAAGCAATTAATAAAGAAAGAGAG 58.754 33.333 0.00 0.00 0.00 3.20
196 197 8.028938 GTGGCAAGCAATTAATAAAGAAAGAGA 58.971 33.333 0.00 0.00 0.00 3.10
197 198 7.814107 TGTGGCAAGCAATTAATAAAGAAAGAG 59.186 33.333 0.00 0.00 0.00 2.85
198 199 7.665690 TGTGGCAAGCAATTAATAAAGAAAGA 58.334 30.769 0.00 0.00 0.00 2.52
199 200 7.887996 TGTGGCAAGCAATTAATAAAGAAAG 57.112 32.000 0.00 0.00 0.00 2.62
200 201 8.093307 TGATGTGGCAAGCAATTAATAAAGAAA 58.907 29.630 0.00 0.00 0.00 2.52
201 202 7.609960 TGATGTGGCAAGCAATTAATAAAGAA 58.390 30.769 0.00 0.00 0.00 2.52
202 203 7.167924 TGATGTGGCAAGCAATTAATAAAGA 57.832 32.000 0.00 0.00 0.00 2.52
203 204 7.924412 AGATGATGTGGCAAGCAATTAATAAAG 59.076 33.333 0.00 0.00 0.00 1.85
204 205 7.784037 AGATGATGTGGCAAGCAATTAATAAA 58.216 30.769 0.00 0.00 0.00 1.40
205 206 7.350744 AGATGATGTGGCAAGCAATTAATAA 57.649 32.000 0.00 0.00 0.00 1.40
206 207 6.964807 AGATGATGTGGCAAGCAATTAATA 57.035 33.333 0.00 0.00 0.00 0.98
207 208 5.864418 AGATGATGTGGCAAGCAATTAAT 57.136 34.783 0.00 0.00 0.00 1.40
208 209 6.964807 ATAGATGATGTGGCAAGCAATTAA 57.035 33.333 0.00 0.00 0.00 1.40
209 210 6.964807 AATAGATGATGTGGCAAGCAATTA 57.035 33.333 0.00 0.00 0.00 1.40
210 211 5.864418 AATAGATGATGTGGCAAGCAATT 57.136 34.783 0.00 0.00 0.00 2.32
211 212 5.864418 AAATAGATGATGTGGCAAGCAAT 57.136 34.783 0.00 0.00 0.00 3.56
212 213 5.664294 AAAATAGATGATGTGGCAAGCAA 57.336 34.783 0.00 0.00 0.00 3.91
213 214 6.774170 AGATAAAATAGATGATGTGGCAAGCA 59.226 34.615 0.00 0.00 0.00 3.91
214 215 7.211966 AGATAAAATAGATGATGTGGCAAGC 57.788 36.000 0.00 0.00 0.00 4.01
215 216 9.716531 TCTAGATAAAATAGATGATGTGGCAAG 57.283 33.333 0.00 0.00 0.00 4.01
233 234 9.875691 GTGCCAACATCACATATATCTAGATAA 57.124 33.333 16.27 6.78 34.73 1.75
234 235 8.478066 GGTGCCAACATCACATATATCTAGATA 58.522 37.037 14.76 14.76 36.22 1.98
235 236 7.181665 AGGTGCCAACATCACATATATCTAGAT 59.818 37.037 10.73 10.73 36.22 1.98
236 237 6.498303 AGGTGCCAACATCACATATATCTAGA 59.502 38.462 0.00 0.00 36.22 2.43
237 238 6.705302 AGGTGCCAACATCACATATATCTAG 58.295 40.000 0.00 0.00 36.22 2.43
238 239 6.686484 AGGTGCCAACATCACATATATCTA 57.314 37.500 0.00 0.00 36.22 1.98
239 240 5.573380 AGGTGCCAACATCACATATATCT 57.427 39.130 0.00 0.00 36.22 1.98
240 241 6.881065 ACATAGGTGCCAACATCACATATATC 59.119 38.462 0.91 0.00 38.77 1.63
241 242 6.782986 ACATAGGTGCCAACATCACATATAT 58.217 36.000 0.91 0.00 38.77 0.86
242 243 6.186420 ACATAGGTGCCAACATCACATATA 57.814 37.500 0.91 0.00 38.77 0.86
243 244 5.052693 ACATAGGTGCCAACATCACATAT 57.947 39.130 0.00 0.00 40.64 1.78
244 245 4.502105 ACATAGGTGCCAACATCACATA 57.498 40.909 0.00 0.00 35.57 2.29
245 246 3.370840 ACATAGGTGCCAACATCACAT 57.629 42.857 0.00 0.00 36.22 3.21
246 247 2.877097 ACATAGGTGCCAACATCACA 57.123 45.000 0.00 0.00 36.22 3.58
247 248 4.261801 AGTAACATAGGTGCCAACATCAC 58.738 43.478 0.00 0.00 0.00 3.06
248 249 4.225042 AGAGTAACATAGGTGCCAACATCA 59.775 41.667 0.00 0.00 0.00 3.07
249 250 4.770795 AGAGTAACATAGGTGCCAACATC 58.229 43.478 0.00 0.00 0.00 3.06
250 251 4.225042 TGAGAGTAACATAGGTGCCAACAT 59.775 41.667 0.00 0.00 0.00 2.71
251 252 3.580895 TGAGAGTAACATAGGTGCCAACA 59.419 43.478 0.00 0.00 0.00 3.33
252 253 3.933332 GTGAGAGTAACATAGGTGCCAAC 59.067 47.826 0.00 0.00 0.00 3.77
253 254 3.838317 AGTGAGAGTAACATAGGTGCCAA 59.162 43.478 0.00 0.00 0.00 4.52
254 255 3.195610 CAGTGAGAGTAACATAGGTGCCA 59.804 47.826 0.00 0.00 0.00 4.92
255 256 3.195825 ACAGTGAGAGTAACATAGGTGCC 59.804 47.826 0.00 0.00 0.00 5.01
256 257 4.177026 CACAGTGAGAGTAACATAGGTGC 58.823 47.826 0.00 0.00 0.00 5.01
257 258 4.382040 CCCACAGTGAGAGTAACATAGGTG 60.382 50.000 0.62 0.00 0.00 4.00
258 259 3.769844 CCCACAGTGAGAGTAACATAGGT 59.230 47.826 0.62 0.00 0.00 3.08
259 260 3.769844 ACCCACAGTGAGAGTAACATAGG 59.230 47.826 0.62 0.00 0.00 2.57
260 261 5.171476 CAACCCACAGTGAGAGTAACATAG 58.829 45.833 0.62 0.00 0.00 2.23
261 262 4.591498 ACAACCCACAGTGAGAGTAACATA 59.409 41.667 0.62 0.00 0.00 2.29
262 263 3.391296 ACAACCCACAGTGAGAGTAACAT 59.609 43.478 0.62 0.00 0.00 2.71
263 264 2.769663 ACAACCCACAGTGAGAGTAACA 59.230 45.455 0.62 0.00 0.00 2.41
264 265 3.069729 AGACAACCCACAGTGAGAGTAAC 59.930 47.826 0.62 0.00 0.00 2.50
265 266 3.305720 AGACAACCCACAGTGAGAGTAA 58.694 45.455 0.62 0.00 0.00 2.24
266 267 2.958818 AGACAACCCACAGTGAGAGTA 58.041 47.619 0.62 0.00 0.00 2.59
267 268 1.794714 AGACAACCCACAGTGAGAGT 58.205 50.000 0.62 0.00 0.00 3.24
268 269 4.039245 TCTTTAGACAACCCACAGTGAGAG 59.961 45.833 0.62 0.00 0.00 3.20
269 270 3.964688 TCTTTAGACAACCCACAGTGAGA 59.035 43.478 0.62 0.00 0.00 3.27
270 271 4.336889 TCTTTAGACAACCCACAGTGAG 57.663 45.455 0.62 0.00 0.00 3.51
271 272 4.764050 TTCTTTAGACAACCCACAGTGA 57.236 40.909 0.62 0.00 0.00 3.41
272 273 5.063204 TGATTCTTTAGACAACCCACAGTG 58.937 41.667 0.00 0.00 0.00 3.66
273 274 5.304686 TGATTCTTTAGACAACCCACAGT 57.695 39.130 0.00 0.00 0.00 3.55
274 275 5.124457 CCATGATTCTTTAGACAACCCACAG 59.876 44.000 0.00 0.00 0.00 3.66
275 276 5.009631 CCATGATTCTTTAGACAACCCACA 58.990 41.667 0.00 0.00 0.00 4.17
276 277 4.399303 CCCATGATTCTTTAGACAACCCAC 59.601 45.833 0.00 0.00 0.00 4.61
277 278 4.569653 CCCCATGATTCTTTAGACAACCCA 60.570 45.833 0.00 0.00 0.00 4.51
278 279 3.954258 CCCCATGATTCTTTAGACAACCC 59.046 47.826 0.00 0.00 0.00 4.11
279 280 3.954258 CCCCCATGATTCTTTAGACAACC 59.046 47.826 0.00 0.00 0.00 3.77
280 281 4.600062 ACCCCCATGATTCTTTAGACAAC 58.400 43.478 0.00 0.00 0.00 3.32
281 282 4.946160 ACCCCCATGATTCTTTAGACAA 57.054 40.909 0.00 0.00 0.00 3.18
282 283 4.599041 CAACCCCCATGATTCTTTAGACA 58.401 43.478 0.00 0.00 0.00 3.41
283 284 3.381590 GCAACCCCCATGATTCTTTAGAC 59.618 47.826 0.00 0.00 0.00 2.59
284 285 3.627237 GGCAACCCCCATGATTCTTTAGA 60.627 47.826 0.00 0.00 0.00 2.10
326 327 0.531974 TTTGGTGTCTGTCGCACTCC 60.532 55.000 0.00 0.00 37.07 3.85
368 369 3.726557 TGAATCCAGAGGCTTGAATGT 57.273 42.857 0.00 0.00 0.00 2.71
445 453 0.402121 GAAGGGTGTGGAGGAAGCTT 59.598 55.000 0.00 0.00 0.00 3.74
490 499 0.961753 CCCTTTTGTGGCTTCAGACC 59.038 55.000 0.00 0.00 0.00 3.85
511 520 2.795470 GCGGACGATCTAGGAATTTGTC 59.205 50.000 0.00 0.00 0.00 3.18
521 530 1.069090 GGCATTGGCGGACGATCTA 59.931 57.895 0.00 0.00 42.47 1.98
556 565 4.124238 CCCGGCGATAGTTGAAGAAATAA 58.876 43.478 9.30 0.00 39.35 1.40
570 579 2.499827 GCCTTCTAGACCCGGCGAT 61.500 63.158 9.30 0.00 32.22 4.58
591 600 5.814481 TGGATCATCACTGTTGGTTATTCA 58.186 37.500 0.00 0.00 0.00 2.57
604 613 3.181451 TGGCACCTATCTTGGATCATCAC 60.181 47.826 0.00 0.00 0.00 3.06
653 663 2.009051 TCACGATCATGATGTTGGTGC 58.991 47.619 14.30 0.00 29.58 5.01
678 688 1.683943 ATTCAATGTCGATGCAGGGG 58.316 50.000 0.00 0.00 0.00 4.79
795 806 0.867753 GTAGACACATCGCCGAGCTG 60.868 60.000 0.00 0.00 0.00 4.24
837 848 1.743958 TGTTCGTTTGGCTCGGAAAAA 59.256 42.857 0.00 0.00 0.00 1.94
838 849 1.380524 TGTTCGTTTGGCTCGGAAAA 58.619 45.000 0.00 0.00 0.00 2.29
839 850 1.380524 TTGTTCGTTTGGCTCGGAAA 58.619 45.000 0.00 0.00 0.00 3.13
840 851 1.380524 TTTGTTCGTTTGGCTCGGAA 58.619 45.000 0.00 0.00 0.00 4.30
841 852 1.265635 CATTTGTTCGTTTGGCTCGGA 59.734 47.619 0.00 0.00 0.00 4.55
842 853 1.265635 TCATTTGTTCGTTTGGCTCGG 59.734 47.619 0.00 0.00 0.00 4.63
843 854 2.032030 ACTCATTTGTTCGTTTGGCTCG 60.032 45.455 0.00 0.00 0.00 5.03
923 1001 6.088824 GCCTCGAAATCTGCCAAATATTATG 58.911 40.000 0.00 0.00 0.00 1.90
924 1002 5.183904 GGCCTCGAAATCTGCCAAATATTAT 59.816 40.000 0.00 0.00 43.46 1.28
925 1003 4.518970 GGCCTCGAAATCTGCCAAATATTA 59.481 41.667 0.00 0.00 43.46 0.98
927 1005 2.887152 GGCCTCGAAATCTGCCAAATAT 59.113 45.455 0.00 0.00 43.46 1.28
928 1006 2.297701 GGCCTCGAAATCTGCCAAATA 58.702 47.619 0.00 0.00 43.46 1.40
929 1007 1.106285 GGCCTCGAAATCTGCCAAAT 58.894 50.000 0.00 0.00 43.46 2.32
932 1010 2.135903 TTGGGCCTCGAAATCTGCCA 62.136 55.000 4.53 0.00 45.83 4.92
933 1011 0.965363 TTTGGGCCTCGAAATCTGCC 60.965 55.000 4.53 0.00 43.26 4.85
934 1012 0.887933 TTTTGGGCCTCGAAATCTGC 59.112 50.000 4.53 0.00 0.00 4.26
935 1013 4.157656 TGTTATTTTGGGCCTCGAAATCTG 59.842 41.667 17.77 0.00 39.49 2.90
936 1014 4.340617 TGTTATTTTGGGCCTCGAAATCT 58.659 39.130 17.77 4.74 39.49 2.40
937 1015 4.712122 TGTTATTTTGGGCCTCGAAATC 57.288 40.909 17.77 9.29 39.49 2.17
938 1016 5.395214 GGATTGTTATTTTGGGCCTCGAAAT 60.395 40.000 18.13 18.13 41.18 2.17
939 1017 4.081917 GGATTGTTATTTTGGGCCTCGAAA 60.082 41.667 4.53 5.89 33.61 3.46
940 1018 3.445805 GGATTGTTATTTTGGGCCTCGAA 59.554 43.478 4.53 0.00 0.00 3.71
941 1019 3.020984 GGATTGTTATTTTGGGCCTCGA 58.979 45.455 4.53 0.00 0.00 4.04
942 1020 2.757868 TGGATTGTTATTTTGGGCCTCG 59.242 45.455 4.53 0.00 0.00 4.63
956 1034 1.153086 GCTCAGGCCGATGGATTGT 60.153 57.895 0.00 0.00 0.00 2.71
971 1049 2.749441 GGCTGCTTCACTGGGCTC 60.749 66.667 0.00 0.00 0.00 4.70
1002 1083 5.422214 TTTTCTTTAGGCGAAGGAGAGAT 57.578 39.130 0.00 0.00 0.00 2.75
1003 1084 4.884668 TTTTCTTTAGGCGAAGGAGAGA 57.115 40.909 0.00 0.00 0.00 3.10
1061 1142 4.840005 GTGGGCTAGCTGGCGTCC 62.840 72.222 16.50 12.91 42.84 4.79
1143 1224 2.125793 GGACTACGGACGCCCAAC 60.126 66.667 0.00 0.00 0.00 3.77
1144 1225 3.751246 CGGACTACGGACGCCCAA 61.751 66.667 0.00 0.00 39.42 4.12
1155 1243 2.494445 CAGCGATGGTGCGGACTA 59.506 61.111 7.11 0.00 40.67 2.59
1307 1407 4.201792 GCTAGCATGAACATGAGTTGACAG 60.202 45.833 17.40 5.19 41.20 3.51
1313 1416 3.572632 ATGGCTAGCATGAACATGAGT 57.427 42.857 18.24 7.05 41.20 3.41
1314 1417 4.383173 TGTATGGCTAGCATGAACATGAG 58.617 43.478 18.24 8.59 41.20 2.90
1357 1467 0.729116 CATCAATGGCGAGGTGACAC 59.271 55.000 0.00 0.00 39.58 3.67
1364 1474 2.855660 TGATTTGCATCAATGGCGAG 57.144 45.000 0.00 0.00 36.41 5.03
1408 1518 6.017440 AGCAATGGCATCAATTATTCAATTGC 60.017 34.615 0.00 2.79 45.11 3.56
1442 1557 3.312421 AGGAAATATGTTCCGAATGTGCG 59.688 43.478 9.58 0.00 43.23 5.34
1443 1558 4.335315 TGAGGAAATATGTTCCGAATGTGC 59.665 41.667 9.58 0.00 43.23 4.57
1450 1565 4.261801 ACCAGTTGAGGAAATATGTTCCG 58.738 43.478 9.58 0.00 43.23 4.30
1560 1678 4.808364 CCTTGAGTGAAAAATTGCGGAAAA 59.192 37.500 0.00 0.00 0.00 2.29
1566 1686 2.477754 GCAGCCTTGAGTGAAAAATTGC 59.522 45.455 0.00 0.00 0.00 3.56
1576 1696 2.795231 ACACATATGCAGCCTTGAGT 57.205 45.000 1.58 0.00 0.00 3.41
1668 1792 6.201517 ACACAAGAAGACATGAAACGATTTG 58.798 36.000 0.00 0.00 0.00 2.32
1763 1888 3.200593 GCAGGACGGCTGCATGAG 61.201 66.667 0.50 0.00 46.19 2.90
1798 1923 1.710244 ACCACAGGGAATGGATGTTGA 59.290 47.619 0.00 0.00 39.87 3.18
1925 2050 3.706594 TCTTGGTGAGAGAAGACTTGTGT 59.293 43.478 0.00 0.00 0.00 3.72
2010 2135 0.514691 CGAACTTCTCCAGCTTGCAC 59.485 55.000 0.00 0.00 0.00 4.57
2154 2282 5.760131 AGAAACCCAGAAATATGAAGGAGG 58.240 41.667 0.00 0.00 0.00 4.30
2172 2300 3.071479 TGTGCTATCCAAACGGAGAAAC 58.929 45.455 0.00 0.00 35.52 2.78
2198 2326 1.004918 AGGTGCCGAGAAGGAAACG 60.005 57.895 0.00 0.00 41.59 3.60
2322 2450 3.650948 TGAGATCTCCTCATGGTCACAT 58.349 45.455 20.03 0.00 46.38 3.21
2353 2481 3.244215 TGACTGACATCCAGAACCTTGAC 60.244 47.826 0.00 0.00 45.78 3.18
2368 2496 4.367450 GAGATAATGAGGCAGTGACTGAC 58.633 47.826 18.18 14.89 40.37 3.51
2621 2761 6.702329 ACACTTGTATGGGTAAGAAGAGAAG 58.298 40.000 0.00 0.00 0.00 2.85
2626 2766 6.070995 TCACCTACACTTGTATGGGTAAGAAG 60.071 42.308 1.15 0.00 30.68 2.85
2719 2947 9.726438 AGACTAACTAGACAAGCAAATACATTT 57.274 29.630 0.00 0.00 0.00 2.32
2734 2962 4.048970 ACCCAGAAGCAGACTAACTAGA 57.951 45.455 0.00 0.00 0.00 2.43
2786 3014 6.442564 ACATATACAAGGGGAAACTGTCAGTA 59.557 38.462 5.77 0.00 0.00 2.74
2910 3140 2.229784 AGCTTGTCAGGTTGCTAAATGC 59.770 45.455 0.00 0.00 43.25 3.56
2942 3172 1.629861 TCAGCAGTCATGACCCAATCA 59.370 47.619 22.21 0.00 43.13 2.57
3011 3241 4.455877 ACCATTTCGAGCTTCAAAGTTAGG 59.544 41.667 0.00 0.00 0.00 2.69
3300 3536 1.227674 CTTAGCACGGATCAGGGCC 60.228 63.158 16.93 0.00 42.61 5.80
3311 3552 1.727335 GAACGAGGTCTTGCTTAGCAC 59.273 52.381 6.34 0.00 38.71 4.40
3337 3579 1.135489 CGGTACATATACTGCGCCGAT 60.135 52.381 4.18 0.00 43.78 4.18
3339 3581 0.039798 ACGGTACATATACTGCGCCG 60.040 55.000 4.18 0.00 45.40 6.46
3341 3583 1.712350 CGAACGGTACATATACTGCGC 59.288 52.381 0.00 0.00 40.86 6.09
3342 3584 1.712350 GCGAACGGTACATATACTGCG 59.288 52.381 0.00 0.00 40.86 5.18
3343 3585 2.724690 CAGCGAACGGTACATATACTGC 59.275 50.000 0.00 0.00 40.86 4.40
3344 3586 4.219143 TCAGCGAACGGTACATATACTG 57.781 45.455 0.00 0.00 42.60 2.74
3346 3588 4.799949 TGTTTCAGCGAACGGTACATATAC 59.200 41.667 0.00 0.00 32.18 1.47
3350 3592 2.157834 TGTTTCAGCGAACGGTACAT 57.842 45.000 0.00 0.00 32.18 2.29
3351 3593 2.157834 ATGTTTCAGCGAACGGTACA 57.842 45.000 0.00 1.09 32.18 2.90
3352 3594 3.531262 AAATGTTTCAGCGAACGGTAC 57.469 42.857 0.00 0.00 32.18 3.34
3353 3595 5.866335 ATAAAATGTTTCAGCGAACGGTA 57.134 34.783 0.00 0.00 32.18 4.02
3356 3598 5.864986 ACCTATAAAATGTTTCAGCGAACG 58.135 37.500 0.00 0.00 32.18 3.95
3357 3599 8.515473 AAAACCTATAAAATGTTTCAGCGAAC 57.485 30.769 0.00 0.00 31.37 3.95
3393 3635 7.599998 GGCACAACATGAGAAGAACAATAAAAT 59.400 33.333 0.00 0.00 0.00 1.82
3394 3636 6.922957 GGCACAACATGAGAAGAACAATAAAA 59.077 34.615 0.00 0.00 0.00 1.52
3395 3637 6.265196 AGGCACAACATGAGAAGAACAATAAA 59.735 34.615 0.00 0.00 0.00 1.40
3396 3638 5.769662 AGGCACAACATGAGAAGAACAATAA 59.230 36.000 0.00 0.00 0.00 1.40
3397 3639 5.181811 CAGGCACAACATGAGAAGAACAATA 59.818 40.000 0.00 0.00 0.00 1.90
3399 3641 3.316029 CAGGCACAACATGAGAAGAACAA 59.684 43.478 0.00 0.00 0.00 2.83
3400 3642 2.880268 CAGGCACAACATGAGAAGAACA 59.120 45.455 0.00 0.00 0.00 3.18
3402 3644 2.880268 CACAGGCACAACATGAGAAGAA 59.120 45.455 0.00 0.00 0.00 2.52
3403 3645 2.158769 ACACAGGCACAACATGAGAAGA 60.159 45.455 0.00 0.00 0.00 2.87
3405 3647 1.948834 CACACAGGCACAACATGAGAA 59.051 47.619 0.00 0.00 0.00 2.87
3407 3649 0.039798 GCACACAGGCACAACATGAG 60.040 55.000 0.00 0.00 0.00 2.90
3409 3651 1.734748 TGCACACAGGCACAACATG 59.265 52.632 0.00 0.00 39.25 3.21
3410 3652 4.256462 TGCACACAGGCACAACAT 57.744 50.000 0.00 0.00 39.25 2.71
3427 3669 5.525378 GTTCACTGAACTTCACAAGAGTGAT 59.475 40.000 13.77 0.00 42.75 3.06
3428 3670 4.870426 GTTCACTGAACTTCACAAGAGTGA 59.130 41.667 13.77 6.68 43.92 3.41
3429 3671 5.149054 GTTCACTGAACTTCACAAGAGTG 57.851 43.478 13.77 0.00 41.66 3.51
3442 3684 3.141398 GCATGGACTGAAGTTCACTGAA 58.859 45.455 0.08 0.00 36.16 3.02
3443 3685 2.550855 GGCATGGACTGAAGTTCACTGA 60.551 50.000 0.08 0.00 36.16 3.41
3444 3686 1.808945 GGCATGGACTGAAGTTCACTG 59.191 52.381 0.08 0.00 36.16 3.66
3445 3687 1.701847 AGGCATGGACTGAAGTTCACT 59.298 47.619 0.08 0.00 36.16 3.41
3446 3688 2.191128 AGGCATGGACTGAAGTTCAC 57.809 50.000 0.08 0.00 36.16 3.18
3449 3691 1.615392 GCAAAGGCATGGACTGAAGTT 59.385 47.619 0.00 0.00 40.72 2.66
3450 3692 1.251251 GCAAAGGCATGGACTGAAGT 58.749 50.000 0.00 0.00 40.72 3.01
3472 3714 1.746615 CCAGGTCTGGGCATCGTTG 60.747 63.158 9.08 0.00 46.81 4.10
3473 3715 2.671070 CCAGGTCTGGGCATCGTT 59.329 61.111 9.08 0.00 46.81 3.85
3494 3826 4.150994 TTGTCCGGACAAGGCAAC 57.849 55.556 39.59 12.24 45.42 4.17
3505 3837 0.512952 CTTTTCTCAGCCGTTGTCCG 59.487 55.000 0.00 0.00 0.00 4.79
3507 3839 1.230324 AGCTTTTCTCAGCCGTTGTC 58.770 50.000 0.00 0.00 41.12 3.18
3524 3856 3.676646 GCTCATGTTCACATTCCAAAAGC 59.323 43.478 0.00 0.00 33.61 3.51
3530 3862 2.096496 CGGAAGCTCATGTTCACATTCC 59.904 50.000 0.00 0.00 33.61 3.01
3536 3868 6.017934 GCTAATAATTCGGAAGCTCATGTTCA 60.018 38.462 0.00 0.00 0.00 3.18
3540 3872 4.686091 TCGCTAATAATTCGGAAGCTCATG 59.314 41.667 0.00 0.00 0.00 3.07
3541 3873 4.883083 TCGCTAATAATTCGGAAGCTCAT 58.117 39.130 0.00 0.00 0.00 2.90
3571 3903 8.376270 AGTTGATAGCTAATATAACTGGGGAAC 58.624 37.037 0.00 0.00 0.00 3.62
3578 3910 8.728596 ACTGGGAGTTGATAGCTAATATAACT 57.271 34.615 0.00 6.29 0.00 2.24
3596 3929 6.840780 ATTTATTTTGTGGAAGACTGGGAG 57.159 37.500 0.00 0.00 0.00 4.30
3598 3931 8.971073 AGATAATTTATTTTGTGGAAGACTGGG 58.029 33.333 0.00 0.00 0.00 4.45
3619 3952 7.747155 AGATAGCTAGTCAAACGCTAGATAA 57.253 36.000 0.00 0.00 39.74 1.75
3622 3955 6.095021 TGAAAGATAGCTAGTCAAACGCTAGA 59.905 38.462 0.00 0.00 39.36 2.43
3624 3957 6.203808 TGAAAGATAGCTAGTCAAACGCTA 57.796 37.500 0.00 0.00 40.18 4.26
3628 3961 8.774586 TCAAAGTTGAAAGATAGCTAGTCAAAC 58.225 33.333 8.21 6.25 32.96 2.93
3637 3970 6.971184 CCATCACATCAAAGTTGAAAGATAGC 59.029 38.462 0.00 0.00 41.13 2.97
3639 3972 6.377996 CCCCATCACATCAAAGTTGAAAGATA 59.622 38.462 0.00 0.00 41.13 1.98
3643 3976 3.577848 CCCCCATCACATCAAAGTTGAAA 59.422 43.478 0.00 0.00 41.13 2.69
3653 3986 2.500910 TCATTTTTGCCCCCATCACATC 59.499 45.455 0.00 0.00 0.00 3.06
3659 3992 0.906775 CTGCTCATTTTTGCCCCCAT 59.093 50.000 0.00 0.00 0.00 4.00
3664 3997 1.150827 GCCAACTGCTCATTTTTGCC 58.849 50.000 0.00 0.00 36.87 4.52
3665 3998 1.150827 GGCCAACTGCTCATTTTTGC 58.849 50.000 0.00 0.00 40.92 3.68
3666 3999 2.298163 AGAGGCCAACTGCTCATTTTTG 59.702 45.455 5.01 0.00 40.92 2.44
3669 4007 1.202976 ACAGAGGCCAACTGCTCATTT 60.203 47.619 23.62 6.35 40.92 2.32
3695 4033 8.766994 ATGTACAAAGTGAAAGCCCATAATAT 57.233 30.769 0.00 0.00 0.00 1.28
3698 4036 6.909550 AATGTACAAAGTGAAAGCCCATAA 57.090 33.333 0.00 0.00 0.00 1.90
3731 4069 3.204526 TGCATTTTCCAAAAGCACAAGG 58.795 40.909 0.00 0.00 31.76 3.61
3751 4089 8.087750 ACAAAAATTACCCACACATCAGTAATG 58.912 33.333 0.00 0.00 41.48 1.90
3754 4295 7.175293 GGTACAAAAATTACCCACACATCAGTA 59.825 37.037 0.00 0.00 33.98 2.74
3769 4310 8.200792 TCTTGCATGTGTTAAGGTACAAAAATT 58.799 29.630 0.00 0.00 0.00 1.82
3771 4312 6.975772 GTCTTGCATGTGTTAAGGTACAAAAA 59.024 34.615 0.00 0.00 0.00 1.94
3776 4317 4.324267 AGGTCTTGCATGTGTTAAGGTAC 58.676 43.478 0.00 0.00 0.00 3.34
3803 4810 2.224314 GCCACTGGATAGCTAAATTCGC 59.776 50.000 0.00 0.00 0.00 4.70
3804 4811 3.733337 AGCCACTGGATAGCTAAATTCG 58.267 45.455 0.00 0.00 34.38 3.34
3809 4816 3.322254 GCTCTTAGCCACTGGATAGCTAA 59.678 47.826 0.00 3.89 44.56 3.09
3812 4819 1.414181 TGCTCTTAGCCACTGGATAGC 59.586 52.381 0.00 0.00 41.51 2.97
3823 4830 4.392921 TCAGGTTGTAGATGCTCTTAGC 57.607 45.455 0.00 0.00 42.82 3.09
3824 4831 7.856145 AAATTCAGGTTGTAGATGCTCTTAG 57.144 36.000 0.00 0.00 0.00 2.18
3825 4832 8.318412 TGTAAATTCAGGTTGTAGATGCTCTTA 58.682 33.333 0.00 0.00 0.00 2.10
3828 4835 6.985188 TGTAAATTCAGGTTGTAGATGCTC 57.015 37.500 0.00 0.00 0.00 4.26
3867 5112 6.070653 TCGCTGTTTTCTTCCCTTATAACCTA 60.071 38.462 0.00 0.00 0.00 3.08
3874 5119 3.070446 TCAGTCGCTGTTTTCTTCCCTTA 59.930 43.478 6.72 0.00 32.61 2.69
3875 5120 2.158813 TCAGTCGCTGTTTTCTTCCCTT 60.159 45.455 6.72 0.00 32.61 3.95
3877 5122 1.878953 TCAGTCGCTGTTTTCTTCCC 58.121 50.000 6.72 0.00 32.61 3.97
3878 5123 4.436183 GCTATTCAGTCGCTGTTTTCTTCC 60.436 45.833 6.72 0.00 32.61 3.46
3879 5124 4.390297 AGCTATTCAGTCGCTGTTTTCTTC 59.610 41.667 6.72 0.00 32.61 2.87
3882 5127 3.679980 TGAGCTATTCAGTCGCTGTTTTC 59.320 43.478 6.72 0.85 33.47 2.29
3886 5131 1.821753 AGTGAGCTATTCAGTCGCTGT 59.178 47.619 6.72 0.00 34.24 4.40
3887 5132 2.159324 TCAGTGAGCTATTCAGTCGCTG 60.159 50.000 5.90 5.90 45.95 5.18
3889 5134 2.568696 TCAGTGAGCTATTCAGTCGC 57.431 50.000 0.00 0.00 37.36 5.19
3890 5135 3.862267 CCTTTCAGTGAGCTATTCAGTCG 59.138 47.826 0.00 0.00 37.36 4.18
3891 5136 5.078411 TCCTTTCAGTGAGCTATTCAGTC 57.922 43.478 0.00 0.00 37.36 3.51
3908 5180 5.552870 TGAAGTAGAGCTCTGTTTCCTTT 57.447 39.130 26.78 9.25 0.00 3.11
3970 5267 7.281100 CCTACATTTTTCTCCCTGTAGTTCATC 59.719 40.741 7.54 0.00 39.47 2.92
3972 5269 6.043938 ACCTACATTTTTCTCCCTGTAGTTCA 59.956 38.462 7.54 0.00 39.47 3.18
3973 5270 6.473758 ACCTACATTTTTCTCCCTGTAGTTC 58.526 40.000 7.54 0.00 39.47 3.01
3974 5271 6.449830 ACCTACATTTTTCTCCCTGTAGTT 57.550 37.500 7.54 0.00 39.47 2.24
3975 5272 6.238648 CAACCTACATTTTTCTCCCTGTAGT 58.761 40.000 7.54 0.00 39.47 2.73
3977 5274 5.007682 GCAACCTACATTTTTCTCCCTGTA 58.992 41.667 0.00 0.00 0.00 2.74
3979 5276 3.826157 TGCAACCTACATTTTTCTCCCTG 59.174 43.478 0.00 0.00 0.00 4.45
3982 5279 4.176271 GCATGCAACCTACATTTTTCTCC 58.824 43.478 14.21 0.00 0.00 3.71
3983 5280 4.176271 GGCATGCAACCTACATTTTTCTC 58.824 43.478 21.36 0.00 0.00 2.87
3985 5282 3.924144 TGGCATGCAACCTACATTTTTC 58.076 40.909 21.36 0.00 0.00 2.29
3986 5283 3.324556 ACTGGCATGCAACCTACATTTTT 59.675 39.130 21.36 0.00 0.00 1.94
3997 5294 2.557924 CCTAAGTTTCACTGGCATGCAA 59.442 45.455 21.36 7.49 0.00 4.08
4021 5318 4.202121 CCAATCAGCATTGCAATTCTAGCT 60.202 41.667 11.35 13.05 38.53 3.32
4022 5319 4.049186 CCAATCAGCATTGCAATTCTAGC 58.951 43.478 11.35 10.95 38.53 3.42
4030 5327 0.906066 ATTGCCCAATCAGCATTGCA 59.094 45.000 11.91 0.00 40.59 4.08
4034 5331 0.906066 TTGCATTGCCCAATCAGCAT 59.094 45.000 6.12 0.00 40.59 3.79
4058 5355 8.073467 TCAAATAGTTTTTCTTCCAGGTGTTT 57.927 30.769 0.00 0.00 0.00 2.83
4156 5481 6.459573 GCCAGTTTTGTGTTTGAGTGAAGATA 60.460 38.462 0.00 0.00 0.00 1.98
4169 5513 3.622612 GCTGAATTTTGCCAGTTTTGTGT 59.377 39.130 0.00 0.00 33.19 3.72
4178 5522 1.289694 CGCCTGCTGAATTTTGCCA 59.710 52.632 0.00 0.00 0.00 4.92
4179 5523 2.096442 GCGCCTGCTGAATTTTGCC 61.096 57.895 0.00 0.00 38.39 4.52
4182 5526 0.889994 TCATGCGCCTGCTGAATTTT 59.110 45.000 4.18 0.00 43.34 1.82
4271 5671 1.624336 ATGCTTTGCTGGTGTGATGT 58.376 45.000 0.00 0.00 0.00 3.06
4286 5686 3.162666 CCATTCCCATGCTATCAATGCT 58.837 45.455 0.00 0.00 0.00 3.79
4702 6126 1.349259 CCACCGCGACTAAACCTTCG 61.349 60.000 8.23 0.00 38.31 3.79
4722 6146 1.710244 TCCCCAAGAAGAAAGATGGCA 59.290 47.619 0.00 0.00 0.00 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.