Multiple sequence alignment - TraesCS2B01G598700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G598700 chr2B 100.000 5199 0 0 1 5199 781772043 781777241 0.000000e+00 9601.0
1 TraesCS2B01G598700 chr2B 93.501 1754 82 19 2684 4410 782125804 782124056 0.000000e+00 2579.0
2 TraesCS2B01G598700 chr2B 87.129 1686 99 42 1 1614 782128809 782127170 0.000000e+00 1803.0
3 TraesCS2B01G598700 chr2B 93.558 1040 47 14 2844 3874 752464137 752465165 0.000000e+00 1531.0
4 TraesCS2B01G598700 chr2B 85.641 780 56 21 1352 2107 50223765 50224512 0.000000e+00 769.0
5 TraesCS2B01G598700 chr2B 93.639 393 17 2 1657 2042 782127163 782126772 9.700000e-162 580.0
6 TraesCS2B01G598700 chr2B 95.493 355 16 0 2034 2388 782126579 782126225 7.560000e-158 568.0
7 TraesCS2B01G598700 chr2B 89.164 323 31 3 2170 2488 782124551 782124229 2.920000e-107 399.0
8 TraesCS2B01G598700 chr2B 95.154 227 11 0 4973 5199 752465813 752465587 4.950000e-95 359.0
9 TraesCS2B01G598700 chr2B 86.025 322 35 3 3926 4240 781774212 781774530 2.320000e-88 337.0
10 TraesCS2B01G598700 chr2B 87.594 266 11 6 2416 2681 782126225 782125982 6.590000e-74 289.0
11 TraesCS2B01G598700 chr2B 86.975 238 20 8 4546 4782 782123871 782123644 1.860000e-64 257.0
12 TraesCS2B01G598700 chr2B 90.960 177 16 0 3329 3505 782127005 782126829 6.730000e-59 239.0
13 TraesCS2B01G598700 chr2B 85.955 178 24 1 1808 1985 752464623 752464799 6.870000e-44 189.0
14 TraesCS2B01G598700 chr2B 75.413 484 66 28 1540 1985 782125444 782124976 8.890000e-43 185.0
15 TraesCS2B01G598700 chr2B 94.231 52 2 1 4857 4907 782123248 782123197 1.550000e-10 78.7
16 TraesCS2B01G598700 chr2B 89.474 57 3 2 3499 3553 50224449 50224504 9.340000e-08 69.4
17 TraesCS2B01G598700 chr2B 89.474 57 3 2 3499 3553 781774086 781774141 9.340000e-08 69.4
18 TraesCS2B01G598700 chr2B 89.474 57 3 2 3499 3553 782126569 782126514 9.340000e-08 69.4
19 TraesCS2B01G598700 chr2D 89.651 1807 98 33 926 2681 648170562 648168794 0.000000e+00 2218.0
20 TraesCS2B01G598700 chr2D 90.687 1514 81 13 3499 4954 648167876 648166365 0.000000e+00 1960.0
21 TraesCS2B01G598700 chr2D 92.536 844 44 10 2673 3505 648168762 648167927 0.000000e+00 1192.0
22 TraesCS2B01G598700 chr2D 85.093 322 38 3 3926 4240 648169304 648168986 2.340000e-83 320.0
23 TraesCS2B01G598700 chr2D 86.220 254 33 2 666 919 170533488 170533739 1.840000e-69 274.0
24 TraesCS2B01G598700 chr2D 77.778 486 49 34 3033 3505 648169928 648169489 1.450000e-60 244.0
25 TraesCS2B01G598700 chr2D 84.937 239 35 1 4955 5193 602659631 602659868 1.870000e-59 241.0
26 TraesCS2B01G598700 chr2D 100.000 28 0 0 638 665 262567325 262567352 9.000000e-03 52.8
27 TraesCS2B01G598700 chr2D 100.000 28 0 0 638 665 587271370 587271343 9.000000e-03 52.8
28 TraesCS2B01G598700 chrUn 90.337 890 49 14 1808 2681 31225087 31225955 0.000000e+00 1133.0
29 TraesCS2B01G598700 chrUn 88.152 920 73 21 3499 4410 31226879 31227770 0.000000e+00 1062.0
30 TraesCS2B01G598700 chrUn 89.265 857 48 19 2673 3505 31225992 31226828 0.000000e+00 1033.0
31 TraesCS2B01G598700 chrUn 82.779 511 36 18 926 1420 31224330 31224804 4.850000e-110 409.0
32 TraesCS2B01G598700 chrUn 87.926 323 29 6 2170 2488 31227281 31227597 6.360000e-99 372.0
33 TraesCS2B01G598700 chrUn 86.007 293 29 5 1808 2099 31226652 31226933 2.350000e-78 303.0
34 TraesCS2B01G598700 chrUn 88.417 259 21 2 4546 4804 31228007 31228256 2.350000e-78 303.0
35 TraesCS2B01G598700 chrUn 83.962 318 39 7 3926 4240 31225464 31225772 1.420000e-75 294.0
36 TraesCS2B01G598700 chrUn 87.805 246 27 3 4955 5199 93871334 93871577 8.520000e-73 285.0
37 TraesCS2B01G598700 chrUn 89.000 200 20 2 3308 3505 31225065 31225264 4.020000e-61 246.0
38 TraesCS2B01G598700 chrUn 96.396 111 4 0 4844 4954 31228518 31228628 3.200000e-42 183.0
39 TraesCS2B01G598700 chrUn 89.474 57 3 3 3499 3553 31225331 31225386 9.340000e-08 69.4
40 TraesCS2B01G598700 chr4B 87.472 878 62 19 1352 2205 455977305 455978158 0.000000e+00 968.0
41 TraesCS2B01G598700 chr4B 85.385 780 62 23 1354 2108 547412673 547411921 0.000000e+00 761.0
42 TraesCS2B01G598700 chr4B 83.794 253 40 1 4947 5199 629770443 629770192 6.730000e-59 239.0
43 TraesCS2B01G598700 chr4B 89.831 177 18 0 3329 3505 455977762 455977938 1.460000e-55 228.0
44 TraesCS2B01G598700 chr4B 89.474 57 3 2 3499 3553 455977997 455978052 9.340000e-08 69.4
45 TraesCS2B01G598700 chr4B 100.000 28 0 0 638 665 144065044 144065017 9.000000e-03 52.8
46 TraesCS2B01G598700 chr6B 88.740 746 60 8 1462 2205 22170200 22170923 0.000000e+00 891.0
47 TraesCS2B01G598700 chr6B 83.483 890 86 26 1352 2205 114735084 114734220 0.000000e+00 773.0
48 TraesCS2B01G598700 chr6B 88.211 246 26 3 4955 5199 42857584 42857827 1.830000e-74 291.0
49 TraesCS2B01G598700 chr6B 89.831 177 18 0 3329 3505 22170529 22170705 1.460000e-55 228.0
50 TraesCS2B01G598700 chr5D 86.169 817 63 16 1352 2142 13173807 13173015 0.000000e+00 837.0
51 TraesCS2B01G598700 chr5D 95.082 61 3 0 1163 1223 557184050 557183990 4.290000e-16 97.1
52 TraesCS2B01G598700 chr5D 97.727 44 1 0 460 503 320397161 320397204 5.580000e-10 76.8
53 TraesCS2B01G598700 chr7D 81.835 534 65 11 3926 4450 621641281 621641791 2.240000e-113 420.0
54 TraesCS2B01G598700 chr7D 82.444 450 50 15 3953 4392 279738485 279738915 2.960000e-97 366.0
55 TraesCS2B01G598700 chr7D 84.350 377 52 6 2114 2488 621641227 621641598 3.830000e-96 363.0
56 TraesCS2B01G598700 chr7D 83.333 252 36 6 4951 5199 559273909 559274157 1.460000e-55 228.0
57 TraesCS2B01G598700 chr7D 76.493 519 52 39 2675 3177 279731579 279732043 8.770000e-53 219.0
58 TraesCS2B01G598700 chr7D 90.476 105 10 0 2565 2669 279731416 279731520 7.020000e-29 139.0
59 TraesCS2B01G598700 chr7D 94.737 57 3 0 316 372 115858462 115858518 7.170000e-14 89.8
60 TraesCS2B01G598700 chr7A 83.333 438 53 6 3926 4356 717083011 717083435 2.270000e-103 387.0
61 TraesCS2B01G598700 chr7A 82.889 450 49 17 3953 4392 316024305 316023874 3.800000e-101 379.0
62 TraesCS2B01G598700 chr7A 84.615 377 51 6 2114 2488 717082957 717083328 8.220000e-98 368.0
63 TraesCS2B01G598700 chr7A 76.255 518 55 38 2675 3177 316031007 316030543 4.080000e-51 213.0
64 TraesCS2B01G598700 chr7A 81.466 232 36 6 3593 3820 735707096 735707324 3.200000e-42 183.0
65 TraesCS2B01G598700 chr7A 89.216 102 11 0 2568 2669 316031167 316031066 1.520000e-25 128.0
66 TraesCS2B01G598700 chr7B 84.636 371 50 5 2120 2488 718365356 718364991 3.830000e-96 363.0
67 TraesCS2B01G598700 chr7B 88.276 290 32 2 2114 2402 746274515 746274803 3.850000e-91 346.0
68 TraesCS2B01G598700 chr7B 80.225 445 45 17 3953 4387 253702004 253701593 1.420000e-75 294.0
69 TraesCS2B01G598700 chr7B 86.220 254 33 1 666 919 128048979 128049230 1.840000e-69 274.0
70 TraesCS2B01G598700 chr7B 75.290 518 59 38 2675 3177 253707458 253706995 3.200000e-42 183.0
71 TraesCS2B01G598700 chr7B 90.196 102 10 0 2568 2669 253707618 253707517 3.270000e-27 134.0
72 TraesCS2B01G598700 chr1D 88.142 253 29 1 668 920 474820921 474821172 3.040000e-77 300.0
73 TraesCS2B01G598700 chr1D 87.649 251 29 1 666 916 356528001 356527753 1.830000e-74 291.0
74 TraesCS2B01G598700 chr1D 89.583 48 4 1 462 509 238651005 238650959 5.620000e-05 60.2
75 TraesCS2B01G598700 chr1D 100.000 28 0 0 638 665 177581409 177581382 9.000000e-03 52.8
76 TraesCS2B01G598700 chr1B 87.600 250 26 2 667 916 388717604 388717360 8.520000e-73 285.0
77 TraesCS2B01G598700 chr4A 86.667 255 32 1 666 920 737708579 737708327 1.100000e-71 281.0
78 TraesCS2B01G598700 chr4A 76.744 215 32 15 1010 1221 605668067 605667868 2.560000e-18 104.0
79 TraesCS2B01G598700 chr4A 95.455 44 2 0 460 503 141570520 141570477 2.600000e-08 71.3
80 TraesCS2B01G598700 chr4A 100.000 28 0 0 638 665 159423563 159423590 9.000000e-03 52.8
81 TraesCS2B01G598700 chr2A 86.667 255 32 2 666 920 696827264 696827012 1.100000e-71 281.0
82 TraesCS2B01G598700 chr5A 85.992 257 32 3 666 922 632273106 632273358 6.630000e-69 272.0
83 TraesCS2B01G598700 chr5A 79.487 195 28 5 439 622 532747418 532747225 1.520000e-25 128.0
84 TraesCS2B01G598700 chr3B 83.936 249 37 3 4952 5199 732867199 732867445 8.700000e-58 235.0
85 TraesCS2B01G598700 chr3B 83.071 254 34 8 4953 5199 415041939 415041688 6.780000e-54 222.0
86 TraesCS2B01G598700 chr5B 82.000 250 37 8 4955 5199 294725006 294724760 6.820000e-49 206.0
87 TraesCS2B01G598700 chr1A 95.238 42 2 0 462 503 571719404 571719445 3.360000e-07 67.6
88 TraesCS2B01G598700 chr4D 100.000 31 0 0 473 503 84421081 84421111 2.020000e-04 58.4
89 TraesCS2B01G598700 chr6D 100.000 28 0 0 638 665 157047492 157047465 9.000000e-03 52.8
90 TraesCS2B01G598700 chr6A 100.000 28 0 0 638 665 417253888 417253861 9.000000e-03 52.8
91 TraesCS2B01G598700 chr3D 100.000 28 0 0 638 665 166259920 166259893 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G598700 chr2B 781772043 781777241 5198 False 3335.800000 9601 91.833000 1 5199 3 chr2B.!!$F3 5198
1 TraesCS2B01G598700 chr2B 752464137 752465165 1028 False 860.000000 1531 89.756500 1808 3874 2 chr2B.!!$F2 2066
2 TraesCS2B01G598700 chr2B 782123197 782128809 5612 True 640.645455 2579 89.415727 1 4907 11 chr2B.!!$R2 4906
3 TraesCS2B01G598700 chr2B 50223765 50224512 747 False 419.200000 769 87.557500 1352 3553 2 chr2B.!!$F1 2201
4 TraesCS2B01G598700 chr2D 648166365 648170562 4197 True 1186.800000 2218 87.149000 926 4954 5 chr2D.!!$R2 4028
5 TraesCS2B01G598700 chrUn 31224330 31228628 4298 False 491.581818 1133 88.337727 926 4954 11 chrUn.!!$F2 4028
6 TraesCS2B01G598700 chr4B 547411921 547412673 752 True 761.000000 761 85.385000 1354 2108 1 chr4B.!!$R2 754
7 TraesCS2B01G598700 chr4B 455977305 455978158 853 False 421.800000 968 88.925667 1352 3553 3 chr4B.!!$F1 2201
8 TraesCS2B01G598700 chr6B 114734220 114735084 864 True 773.000000 773 83.483000 1352 2205 1 chr6B.!!$R1 853
9 TraesCS2B01G598700 chr6B 22170200 22170923 723 False 559.500000 891 89.285500 1462 3505 2 chr6B.!!$F2 2043
10 TraesCS2B01G598700 chr5D 13173015 13173807 792 True 837.000000 837 86.169000 1352 2142 1 chr5D.!!$R1 790
11 TraesCS2B01G598700 chr7D 621641227 621641791 564 False 391.500000 420 83.092500 2114 4450 2 chr7D.!!$F5 2336

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.171455 ACTCGGATCAAGCTGTCGTC 59.829 55.000 0.0 0.0 0.00 4.20 F
235 236 1.273606 CCTCTTCGCACTCTTCCTTGA 59.726 52.381 0.0 0.0 0.00 3.02 F
380 381 1.623542 GGAGTGGGGCAGATACCGTT 61.624 60.000 0.0 0.0 0.00 4.44 F
1067 1083 0.675837 CGAGACCTCACCAGTCGGTA 60.676 60.000 0.0 0.0 46.94 4.02 F
1427 1479 0.179018 ACGCAAGCTCCCAGTTTCTT 60.179 50.000 0.0 0.0 45.62 2.52 F
1664 1750 0.251297 TGCTTCCCCAAGTGGACATG 60.251 55.000 0.0 0.0 37.39 3.21 F
3137 3688 0.251916 TCGTATGCTTCCCCAAGTGG 59.748 55.000 0.0 0.0 31.45 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1037 1053 0.825840 GAGGTCTCGAGGGGATGGAG 60.826 65.000 13.56 0.0 35.20 3.86 R
1041 1057 1.075896 GGTGAGGTCTCGAGGGGAT 60.076 63.158 13.56 0.0 0.00 3.85 R
1269 1301 1.134371 GGAGGAAGGAAGGACCGAATG 60.134 57.143 0.00 0.0 44.74 2.67 R
2737 3281 1.809207 GATGACAACATTGGCCCGG 59.191 57.895 0.00 0.0 36.82 5.73 R
3244 3802 0.383231 GGGCAGCCAATTCTCAATCG 59.617 55.000 15.19 0.0 0.00 3.34 R
3570 4201 0.546598 GTCACCCAAGGTATCCCAGG 59.453 60.000 0.00 0.0 32.11 4.45 R
5035 6129 0.037697 TCGAGTTGTGTAAGCGCCAT 60.038 50.000 2.29 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.171455 ACTCGGATCAAGCTGTCGTC 59.829 55.000 0.00 0.00 0.00 4.20
22 23 1.519455 CGGATCAAGCTGTCGTCCC 60.519 63.158 0.00 0.00 0.00 4.46
98 99 6.577427 CCTGCTTGACGTTAACAAAGATTAAC 59.423 38.462 13.89 0.00 40.28 2.01
127 128 5.947228 TCTTCATTGCTCAGTAACTTTGG 57.053 39.130 0.00 0.00 0.00 3.28
156 157 5.810587 TCCGCTAACATATTGTTCTTGACTC 59.189 40.000 0.00 0.00 40.22 3.36
209 210 4.626287 GCCTTGTCATCAATGGGTTCTCTA 60.626 45.833 0.00 0.00 32.82 2.43
235 236 1.273606 CCTCTTCGCACTCTTCCTTGA 59.726 52.381 0.00 0.00 0.00 3.02
274 275 3.777106 ACTTGTGGAATCAGCAGAGAA 57.223 42.857 0.00 0.00 0.00 2.87
314 315 2.203800 TACTGATAACGGCTTCAGCG 57.796 50.000 9.75 0.00 42.51 5.18
351 352 9.482627 AGTTTCATCAAGTTAACAAACAAAACA 57.517 25.926 8.61 0.00 0.00 2.83
364 365 5.639082 ACAAACAAAACAAAAAGAGCAGGAG 59.361 36.000 0.00 0.00 0.00 3.69
372 373 2.134630 AAAGAGCAGGAGTGGGGCAG 62.135 60.000 0.00 0.00 0.00 4.85
379 380 2.064581 GGAGTGGGGCAGATACCGT 61.065 63.158 0.00 0.00 0.00 4.83
380 381 1.623542 GGAGTGGGGCAGATACCGTT 61.624 60.000 0.00 0.00 0.00 4.44
406 407 3.065510 TCAGCTCGAGAGTAGTGTATTGC 59.934 47.826 18.75 0.00 0.00 3.56
504 505 5.415415 TTTGAATTGGCGAAATTTTGTGG 57.585 34.783 7.27 0.00 38.64 4.17
509 510 5.861222 ATTGGCGAAATTTTGTGGAATTC 57.139 34.783 7.27 0.00 0.00 2.17
523 534 4.865925 TGTGGAATTCCTAAATACACGACG 59.134 41.667 24.73 0.00 36.45 5.12
639 650 1.705337 CCACGGCATCACGTCCAATC 61.705 60.000 0.00 0.00 46.75 2.67
695 706 8.621286 CCTTTTTACTCCGCATATAAGATTTGT 58.379 33.333 0.00 0.00 0.00 2.83
697 708 6.539649 TTACTCCGCATATAAGATTTGTGC 57.460 37.500 0.00 0.00 0.00 4.57
716 727 6.126568 TGTGCCTAGTCAAACTTTACAAAC 57.873 37.500 0.00 0.00 0.00 2.93
756 767 9.713740 GCATAAAAATATATCAGCATCTACAGC 57.286 33.333 0.00 0.00 0.00 4.40
761 772 9.511272 AAAATATATCAGCATCTACAGCATCAA 57.489 29.630 0.00 0.00 0.00 2.57
771 782 9.597170 AGCATCTACAGCATCAAATATACATAG 57.403 33.333 0.00 0.00 0.00 2.23
772 783 9.376075 GCATCTACAGCATCAAATATACATAGT 57.624 33.333 0.00 0.00 0.00 2.12
848 860 8.560374 AGTGTTGATACTTTTCTTTCTGTAAGC 58.440 33.333 0.00 0.00 33.66 3.09
901 913 7.497579 TCAGACAAAAGTTATGTGCAGACTAAA 59.502 33.333 0.00 0.00 0.00 1.85
902 914 8.128582 CAGACAAAAGTTATGTGCAGACTAAAA 58.871 33.333 0.00 0.00 0.00 1.52
903 915 8.682710 AGACAAAAGTTATGTGCAGACTAAAAA 58.317 29.630 0.00 0.00 0.00 1.94
1004 1020 5.265477 CCGTCGTCTCGTTTTGTATATACA 58.735 41.667 11.62 11.62 0.00 2.29
1039 1055 3.775654 CGCCTCCACCTCCACCTC 61.776 72.222 0.00 0.00 0.00 3.85
1040 1056 3.403558 GCCTCCACCTCCACCTCC 61.404 72.222 0.00 0.00 0.00 4.30
1041 1057 2.122729 CCTCCACCTCCACCTCCA 59.877 66.667 0.00 0.00 0.00 3.86
1067 1083 0.675837 CGAGACCTCACCAGTCGGTA 60.676 60.000 0.00 0.00 46.94 4.02
1068 1084 1.765230 GAGACCTCACCAGTCGGTAT 58.235 55.000 0.00 0.00 46.94 2.73
1069 1085 2.744166 CGAGACCTCACCAGTCGGTATA 60.744 54.545 0.00 0.00 46.94 1.47
1070 1086 2.879646 GAGACCTCACCAGTCGGTATAG 59.120 54.545 0.00 0.00 46.94 1.31
1071 1087 2.508716 AGACCTCACCAGTCGGTATAGA 59.491 50.000 0.00 0.00 46.94 1.98
1072 1088 2.879646 GACCTCACCAGTCGGTATAGAG 59.120 54.545 0.00 0.00 46.94 2.43
1073 1089 2.241685 ACCTCACCAGTCGGTATAGAGT 59.758 50.000 0.00 0.00 46.94 3.24
1093 1109 5.007430 AGAGTATACTACACACGAATCACCG 59.993 44.000 5.09 0.00 0.00 4.94
1268 1300 4.363573 CCTCCCTCTAAAGTTCTAACCCT 58.636 47.826 0.00 0.00 0.00 4.34
1269 1301 4.406326 CCTCCCTCTAAAGTTCTAACCCTC 59.594 50.000 0.00 0.00 0.00 4.30
1274 1306 6.043411 CCTCTAAAGTTCTAACCCTCATTCG 58.957 44.000 0.00 0.00 0.00 3.34
1275 1307 5.974108 TCTAAAGTTCTAACCCTCATTCGG 58.026 41.667 0.00 0.00 0.00 4.30
1278 1310 2.500504 AGTTCTAACCCTCATTCGGTCC 59.499 50.000 0.00 0.00 31.48 4.46
1279 1311 2.500504 GTTCTAACCCTCATTCGGTCCT 59.499 50.000 0.00 0.00 31.48 3.85
1309 1342 0.937699 GCGTTTGCTTTCGGTTTCCC 60.938 55.000 0.00 0.00 38.39 3.97
1345 1392 1.276705 TGTTTTCGGGTCGATCCATCA 59.723 47.619 16.61 2.98 35.23 3.07
1427 1479 0.179018 ACGCAAGCTCCCAGTTTCTT 60.179 50.000 0.00 0.00 45.62 2.52
1441 1507 2.028930 AGTTTCTTGCCCTCTACACTCG 60.029 50.000 0.00 0.00 0.00 4.18
1452 1518 4.324267 CCTCTACACTCGGGTCAAAATTT 58.676 43.478 0.00 0.00 0.00 1.82
1454 1520 5.935789 CCTCTACACTCGGGTCAAAATTTAA 59.064 40.000 0.00 0.00 0.00 1.52
1455 1521 6.128363 CCTCTACACTCGGGTCAAAATTTAAC 60.128 42.308 0.00 0.00 0.00 2.01
1456 1522 6.527423 TCTACACTCGGGTCAAAATTTAACT 58.473 36.000 0.00 0.00 0.00 2.24
1458 1524 6.796705 ACACTCGGGTCAAAATTTAACTAG 57.203 37.500 0.00 0.00 0.00 2.57
1459 1525 5.180680 ACACTCGGGTCAAAATTTAACTAGC 59.819 40.000 0.00 0.00 0.00 3.42
1463 1543 6.616947 TCGGGTCAAAATTTAACTAGCATTG 58.383 36.000 0.00 0.00 0.00 2.82
1477 1557 3.659183 AGCATTGAGTCCAGCCTAATT 57.341 42.857 0.00 0.00 0.00 1.40
1518 1601 7.155328 ACTAGGATTAAATTATGTCGGAGCAG 58.845 38.462 0.00 0.00 0.00 4.24
1521 1604 6.483640 AGGATTAAATTATGTCGGAGCAGTTC 59.516 38.462 0.00 0.00 0.00 3.01
1526 1609 2.479566 ATGTCGGAGCAGTTCAACAT 57.520 45.000 0.00 0.36 32.18 2.71
1536 1619 4.898320 AGCAGTTCAACATACAGATGTCA 58.102 39.130 0.00 0.00 45.93 3.58
1537 1620 4.692625 AGCAGTTCAACATACAGATGTCAC 59.307 41.667 0.00 0.00 45.93 3.67
1538 1621 4.452114 GCAGTTCAACATACAGATGTCACA 59.548 41.667 0.00 0.00 45.93 3.58
1613 1697 2.293122 CGGGATGCAGTTTTGTTCTGAA 59.707 45.455 0.00 0.00 35.20 3.02
1614 1698 3.642705 GGGATGCAGTTTTGTTCTGAAC 58.357 45.455 13.49 13.49 35.20 3.18
1615 1699 3.300009 GGATGCAGTTTTGTTCTGAACG 58.700 45.455 15.18 1.80 35.20 3.95
1616 1700 3.003275 GGATGCAGTTTTGTTCTGAACGA 59.997 43.478 15.18 11.02 35.20 3.85
1617 1701 3.398954 TGCAGTTTTGTTCTGAACGAC 57.601 42.857 15.18 12.95 35.20 4.34
1618 1702 3.006940 TGCAGTTTTGTTCTGAACGACT 58.993 40.909 15.18 14.70 35.20 4.18
1619 1703 3.181511 TGCAGTTTTGTTCTGAACGACTG 60.182 43.478 28.26 28.26 39.90 3.51
1620 1704 3.063452 GCAGTTTTGTTCTGAACGACTGA 59.937 43.478 32.38 13.25 39.59 3.41
1661 1745 1.282157 AGTATGCTTCCCCAAGTGGAC 59.718 52.381 0.00 0.00 37.39 4.02
1664 1750 0.251297 TGCTTCCCCAAGTGGACATG 60.251 55.000 0.00 0.00 37.39 3.21
1673 1761 3.545703 CCAAGTGGACATGTATTCCTCC 58.454 50.000 0.00 0.00 37.39 4.30
1751 1846 4.801164 AGGAATTCAGAATTGGGGATCTG 58.199 43.478 13.38 0.00 43.51 2.90
2156 2519 2.028112 ACCTTCTCGAGCATGCTAAACA 60.028 45.455 22.74 2.11 0.00 2.83
2172 2535 5.767665 TGCTAAACAGCTAATCAACCAGAAA 59.232 36.000 0.00 0.00 35.49 2.52
2377 2746 8.948631 ATCATATACAGTAAACTGAGTGTTGG 57.051 34.615 16.74 1.06 46.59 3.77
2669 3038 6.019748 AGGATCGTCAATAAGATGTAGGGAT 58.980 40.000 0.00 0.00 34.73 3.85
2737 3281 4.830826 AGAGAAATTTCCCGTGTGTTTC 57.169 40.909 14.61 2.72 0.00 2.78
2771 3315 7.542025 TGTTGTCATCGATCCATCTGATATAG 58.458 38.462 0.00 0.00 32.41 1.31
3057 3602 5.037385 ACAGATATCACACGTTTGATCTCG 58.963 41.667 19.89 16.34 37.42 4.04
3101 3650 0.389687 CGTGCCGGGATGCAATTTTT 60.390 50.000 2.18 0.00 44.11 1.94
3137 3688 0.251916 TCGTATGCTTCCCCAAGTGG 59.748 55.000 0.00 0.00 31.45 4.00
3244 3802 5.128991 GCCTATAGGAATGGAGGGTGTATAC 59.871 48.000 23.61 0.00 37.39 1.47
3282 3840 0.395311 CTGCCTACTCGTCCCACCTA 60.395 60.000 0.00 0.00 0.00 3.08
3459 4031 5.467035 AAGAGAAGATCTATACTGCAGCC 57.533 43.478 15.27 0.00 37.23 4.85
3570 4201 7.741027 AAGTACCTTTAGCAGTTTACCTTTC 57.259 36.000 0.00 0.00 0.00 2.62
3571 4202 6.236409 AGTACCTTTAGCAGTTTACCTTTCC 58.764 40.000 0.00 0.00 0.00 3.13
3717 4350 0.967380 CTTGAACTGGGCCATGGGTC 60.967 60.000 15.13 5.05 0.00 4.46
3778 4411 9.334693 CTGAGTTATTTTAGCATTTTCACACTC 57.665 33.333 0.00 0.00 0.00 3.51
3788 4421 5.049198 AGCATTTTCACACTCAGTACACATG 60.049 40.000 0.00 0.00 0.00 3.21
3799 4432 7.659799 ACACTCAGTACACATGCAAATAGTAAA 59.340 33.333 0.00 0.00 0.00 2.01
3910 4546 8.147704 TCACATGTTGAATCTTGTAGTGAACTA 58.852 33.333 0.00 0.00 31.36 2.24
3945 4581 1.069049 GAACTGTTGGTTGCAAGCCAT 59.931 47.619 24.81 8.21 38.41 4.40
4031 4667 5.937540 TGCGGAAGATTTCTCTGAAAATACA 59.062 36.000 0.00 0.00 0.00 2.29
4104 4747 0.107361 CAACCCCGGTCAAGGTATCC 60.107 60.000 0.00 0.00 34.45 2.59
4106 4749 0.981277 ACCCCGGTCAAGGTATCCTG 60.981 60.000 0.00 0.00 33.52 3.86
4153 4805 6.757897 TTTTATCATCTTCGCTTGGATGTT 57.242 33.333 0.00 0.00 39.93 2.71
4222 4875 0.833287 ATCAACATCCACCCTCTCCG 59.167 55.000 0.00 0.00 0.00 4.63
4290 4943 0.611714 AGTTATTGAACCCGGAGCGT 59.388 50.000 0.73 0.00 36.08 5.07
4314 4967 1.079336 GACACGGTAAGGGCCTCAC 60.079 63.158 6.46 0.59 0.00 3.51
4398 5084 5.467735 ACGGTTTTTGTCTGTTAGTATGGTC 59.532 40.000 0.00 0.00 0.00 4.02
4476 5178 5.048364 TCCAAACAATGTTAAAGATGGTCCG 60.048 40.000 12.01 0.00 0.00 4.79
4493 5195 1.626321 TCCGATTGCTTCCACCTACAA 59.374 47.619 0.00 0.00 0.00 2.41
4528 5262 1.684869 CCCTGGTTTATGCCGGTTCAT 60.685 52.381 1.90 0.81 33.07 2.57
4613 5371 2.549064 TGTGTCAGCAGCAGTATTGT 57.451 45.000 0.00 0.00 0.00 2.71
4674 5432 7.637709 GTTCACTTTTCAACTTTGAACTTGT 57.362 32.000 3.84 1.77 45.99 3.16
4726 5484 7.101700 ACTAAATCGGTTTACTTTAGTCCCTG 58.898 38.462 0.00 0.00 40.06 4.45
4748 5506 2.291605 GGCCCTATCCAAAGTGGTTTCT 60.292 50.000 0.00 0.00 39.03 2.52
4776 5534 6.652481 GTGATATGGCATCAGCTTATACAAGT 59.348 38.462 1.65 0.00 41.70 3.16
4778 5536 3.457234 TGGCATCAGCTTATACAAGTCG 58.543 45.455 0.00 0.00 41.70 4.18
4954 6048 2.627515 AGTGCGATGCCTATGTCATT 57.372 45.000 0.00 0.00 0.00 2.57
4955 6049 2.923121 AGTGCGATGCCTATGTCATTT 58.077 42.857 0.00 0.00 0.00 2.32
4956 6050 3.282021 AGTGCGATGCCTATGTCATTTT 58.718 40.909 0.00 0.00 0.00 1.82
4957 6051 3.696051 AGTGCGATGCCTATGTCATTTTT 59.304 39.130 0.00 0.00 0.00 1.94
4979 6073 3.989705 TTTCGAATACGCATGAGTGTG 57.010 42.857 12.80 0.00 39.22 3.82
4980 6074 1.277326 TCGAATACGCATGAGTGTGC 58.723 50.000 12.80 3.04 39.47 4.57
4992 6086 6.653273 GCATGAGTGTGCGTATCATATATT 57.347 37.500 0.00 0.00 35.10 1.28
4993 6087 6.472680 GCATGAGTGTGCGTATCATATATTG 58.527 40.000 0.00 0.00 35.10 1.90
4994 6088 6.311200 GCATGAGTGTGCGTATCATATATTGA 59.689 38.462 0.00 0.00 35.47 2.57
4995 6089 7.010830 GCATGAGTGTGCGTATCATATATTGAT 59.989 37.037 0.00 5.92 40.65 2.57
4996 6090 9.520204 CATGAGTGTGCGTATCATATATTGATA 57.480 33.333 0.00 4.47 43.43 2.15
4997 6091 9.741647 ATGAGTGTGCGTATCATATATTGATAG 57.258 33.333 7.45 5.02 45.74 2.08
4998 6092 8.956426 TGAGTGTGCGTATCATATATTGATAGA 58.044 33.333 7.45 0.00 45.74 1.98
4999 6093 9.788960 GAGTGTGCGTATCATATATTGATAGAA 57.211 33.333 7.45 0.00 45.74 2.10
5000 6094 9.794685 AGTGTGCGTATCATATATTGATAGAAG 57.205 33.333 7.45 5.19 45.74 2.85
5001 6095 9.025020 GTGTGCGTATCATATATTGATAGAAGG 57.975 37.037 7.45 0.00 45.74 3.46
5002 6096 8.966868 TGTGCGTATCATATATTGATAGAAGGA 58.033 33.333 7.45 3.48 45.74 3.36
5003 6097 9.803315 GTGCGTATCATATATTGATAGAAGGAA 57.197 33.333 7.45 0.00 45.74 3.36
5009 6103 8.162848 TCATATATTGATAGAAGGAAAGGGGG 57.837 38.462 0.00 0.00 0.00 5.40
5010 6104 7.967170 TCATATATTGATAGAAGGAAAGGGGGA 59.033 37.037 0.00 0.00 0.00 4.81
5011 6105 8.614814 CATATATTGATAGAAGGAAAGGGGGAA 58.385 37.037 0.00 0.00 0.00 3.97
5012 6106 4.862641 TTGATAGAAGGAAAGGGGGAAG 57.137 45.455 0.00 0.00 0.00 3.46
5013 6107 4.088634 TGATAGAAGGAAAGGGGGAAGA 57.911 45.455 0.00 0.00 0.00 2.87
5014 6108 4.444611 TGATAGAAGGAAAGGGGGAAGAA 58.555 43.478 0.00 0.00 0.00 2.52
5015 6109 4.855599 TGATAGAAGGAAAGGGGGAAGAAA 59.144 41.667 0.00 0.00 0.00 2.52
5016 6110 3.527507 AGAAGGAAAGGGGGAAGAAAC 57.472 47.619 0.00 0.00 0.00 2.78
5017 6111 2.110188 AGAAGGAAAGGGGGAAGAAACC 59.890 50.000 0.00 0.00 0.00 3.27
5024 6118 3.163503 GGGAAGAAACCCCGTCCA 58.836 61.111 0.00 0.00 43.81 4.02
5025 6119 1.303074 GGGAAGAAACCCCGTCCAC 60.303 63.158 0.00 0.00 43.81 4.02
5026 6120 1.452801 GGAAGAAACCCCGTCCACA 59.547 57.895 0.00 0.00 35.25 4.17
5027 6121 0.179012 GGAAGAAACCCCGTCCACAA 60.179 55.000 0.00 0.00 35.25 3.33
5028 6122 1.546998 GGAAGAAACCCCGTCCACAAT 60.547 52.381 0.00 0.00 35.25 2.71
5029 6123 2.290450 GGAAGAAACCCCGTCCACAATA 60.290 50.000 0.00 0.00 35.25 1.90
5030 6124 3.617284 GAAGAAACCCCGTCCACAATAT 58.383 45.455 0.00 0.00 0.00 1.28
5031 6125 3.732048 AGAAACCCCGTCCACAATATT 57.268 42.857 0.00 0.00 0.00 1.28
5032 6126 4.042271 AGAAACCCCGTCCACAATATTT 57.958 40.909 0.00 0.00 0.00 1.40
5033 6127 5.182169 AGAAACCCCGTCCACAATATTTA 57.818 39.130 0.00 0.00 0.00 1.40
5034 6128 4.945543 AGAAACCCCGTCCACAATATTTAC 59.054 41.667 0.00 0.00 0.00 2.01
5035 6129 4.304048 AACCCCGTCCACAATATTTACA 57.696 40.909 0.00 0.00 0.00 2.41
5036 6130 4.513406 ACCCCGTCCACAATATTTACAT 57.487 40.909 0.00 0.00 0.00 2.29
5037 6131 4.204012 ACCCCGTCCACAATATTTACATG 58.796 43.478 0.00 0.00 0.00 3.21
5038 6132 3.568007 CCCCGTCCACAATATTTACATGG 59.432 47.826 0.00 0.00 0.00 3.66
5039 6133 3.004315 CCCGTCCACAATATTTACATGGC 59.996 47.826 0.00 0.00 0.00 4.40
5040 6134 3.303725 CCGTCCACAATATTTACATGGCG 60.304 47.826 0.00 1.18 33.01 5.69
5041 6135 3.628017 GTCCACAATATTTACATGGCGC 58.372 45.455 0.00 0.00 0.00 6.53
5042 6136 3.315191 GTCCACAATATTTACATGGCGCT 59.685 43.478 7.64 0.00 0.00 5.92
5043 6137 3.951037 TCCACAATATTTACATGGCGCTT 59.049 39.130 7.64 0.00 0.00 4.68
5044 6138 5.008217 GTCCACAATATTTACATGGCGCTTA 59.992 40.000 7.64 0.00 0.00 3.09
5045 6139 5.008217 TCCACAATATTTACATGGCGCTTAC 59.992 40.000 7.64 0.00 0.00 2.34
5046 6140 5.220951 CCACAATATTTACATGGCGCTTACA 60.221 40.000 7.64 0.00 0.00 2.41
5047 6141 5.681105 CACAATATTTACATGGCGCTTACAC 59.319 40.000 7.64 0.00 0.00 2.90
5048 6142 5.355630 ACAATATTTACATGGCGCTTACACA 59.644 36.000 7.64 0.00 0.00 3.72
5049 6143 6.127869 ACAATATTTACATGGCGCTTACACAA 60.128 34.615 7.64 0.00 0.00 3.33
5050 6144 3.546002 TTTACATGGCGCTTACACAAC 57.454 42.857 7.64 0.00 0.00 3.32
5051 6145 2.465860 TACATGGCGCTTACACAACT 57.534 45.000 7.64 0.00 0.00 3.16
5052 6146 1.156736 ACATGGCGCTTACACAACTC 58.843 50.000 7.64 0.00 0.00 3.01
5053 6147 0.095245 CATGGCGCTTACACAACTCG 59.905 55.000 7.64 0.00 0.00 4.18
5054 6148 0.037697 ATGGCGCTTACACAACTCGA 60.038 50.000 7.64 0.00 0.00 4.04
5055 6149 0.037697 TGGCGCTTACACAACTCGAT 60.038 50.000 7.64 0.00 0.00 3.59
5056 6150 0.645868 GGCGCTTACACAACTCGATC 59.354 55.000 7.64 0.00 0.00 3.69
5057 6151 0.645868 GCGCTTACACAACTCGATCC 59.354 55.000 0.00 0.00 0.00 3.36
5058 6152 1.990799 CGCTTACACAACTCGATCCA 58.009 50.000 0.00 0.00 0.00 3.41
5059 6153 1.654105 CGCTTACACAACTCGATCCAC 59.346 52.381 0.00 0.00 0.00 4.02
5060 6154 2.000447 GCTTACACAACTCGATCCACC 59.000 52.381 0.00 0.00 0.00 4.61
5061 6155 2.259618 CTTACACAACTCGATCCACCG 58.740 52.381 0.00 0.00 0.00 4.94
5062 6156 1.250328 TACACAACTCGATCCACCGT 58.750 50.000 0.00 0.00 0.00 4.83
5063 6157 0.319555 ACACAACTCGATCCACCGTG 60.320 55.000 0.00 0.00 0.00 4.94
5064 6158 0.319555 CACAACTCGATCCACCGTGT 60.320 55.000 0.00 0.00 37.79 4.49
5065 6159 0.038526 ACAACTCGATCCACCGTGTC 60.039 55.000 0.00 0.00 35.57 3.67
5066 6160 0.038618 CAACTCGATCCACCGTGTCA 60.039 55.000 0.00 0.00 35.57 3.58
5067 6161 0.243907 AACTCGATCCACCGTGTCAG 59.756 55.000 0.00 0.00 35.57 3.51
5068 6162 1.517257 CTCGATCCACCGTGTCAGC 60.517 63.158 0.00 0.00 0.00 4.26
5069 6163 1.938657 CTCGATCCACCGTGTCAGCT 61.939 60.000 0.00 0.00 0.00 4.24
5070 6164 0.678684 TCGATCCACCGTGTCAGCTA 60.679 55.000 0.00 0.00 0.00 3.32
5071 6165 0.385751 CGATCCACCGTGTCAGCTAT 59.614 55.000 0.00 0.00 0.00 2.97
5072 6166 1.607148 CGATCCACCGTGTCAGCTATA 59.393 52.381 0.00 0.00 0.00 1.31
5073 6167 2.350868 CGATCCACCGTGTCAGCTATAG 60.351 54.545 0.00 0.00 0.00 1.31
5074 6168 1.399714 TCCACCGTGTCAGCTATAGG 58.600 55.000 1.04 0.00 0.00 2.57
5075 6169 1.112113 CCACCGTGTCAGCTATAGGT 58.888 55.000 0.00 0.00 0.00 3.08
5076 6170 1.202417 CCACCGTGTCAGCTATAGGTG 60.202 57.143 23.17 23.17 46.16 4.00
5077 6171 1.112113 ACCGTGTCAGCTATAGGTGG 58.888 55.000 27.14 15.81 43.23 4.61
5078 6172 1.341679 ACCGTGTCAGCTATAGGTGGA 60.342 52.381 27.14 14.36 43.23 4.02
5079 6173 1.964223 CCGTGTCAGCTATAGGTGGAT 59.036 52.381 27.14 0.00 43.23 3.41
5080 6174 2.365617 CCGTGTCAGCTATAGGTGGATT 59.634 50.000 27.14 0.00 43.23 3.01
5081 6175 3.572682 CCGTGTCAGCTATAGGTGGATTA 59.427 47.826 27.14 9.18 43.23 1.75
5082 6176 4.547532 CGTGTCAGCTATAGGTGGATTAC 58.452 47.826 27.14 19.26 43.23 1.89
5083 6177 4.278669 CGTGTCAGCTATAGGTGGATTACT 59.721 45.833 27.14 0.00 43.23 2.24
5084 6178 5.563085 CGTGTCAGCTATAGGTGGATTACTC 60.563 48.000 27.14 18.02 43.23 2.59
5085 6179 4.833380 TGTCAGCTATAGGTGGATTACTCC 59.167 45.833 27.14 9.35 43.23 3.85
5086 6180 4.221041 GTCAGCTATAGGTGGATTACTCCC 59.779 50.000 27.14 5.35 43.23 4.30
5087 6181 3.515901 CAGCTATAGGTGGATTACTCCCC 59.484 52.174 21.78 0.00 41.29 4.81
5088 6182 2.496470 GCTATAGGTGGATTACTCCCCG 59.504 54.545 1.04 0.00 41.29 5.73
5089 6183 2.789323 ATAGGTGGATTACTCCCCGT 57.211 50.000 0.00 0.00 41.29 5.28
5090 6184 3.909427 ATAGGTGGATTACTCCCCGTA 57.091 47.619 0.00 0.00 41.29 4.02
5091 6185 1.785647 AGGTGGATTACTCCCCGTAC 58.214 55.000 0.00 0.00 41.29 3.67
5092 6186 1.290130 AGGTGGATTACTCCCCGTACT 59.710 52.381 0.00 0.00 41.29 2.73
5093 6187 1.685517 GGTGGATTACTCCCCGTACTC 59.314 57.143 0.00 0.00 41.29 2.59
5094 6188 1.685517 GTGGATTACTCCCCGTACTCC 59.314 57.143 0.00 0.00 44.22 3.85
5095 6189 1.336131 GGATTACTCCCCGTACTCCC 58.664 60.000 0.00 0.00 40.34 4.30
5096 6190 1.412074 GGATTACTCCCCGTACTCCCA 60.412 57.143 0.00 0.00 40.34 4.37
5097 6191 1.685517 GATTACTCCCCGTACTCCCAC 59.314 57.143 0.00 0.00 0.00 4.61
5098 6192 0.324645 TTACTCCCCGTACTCCCACC 60.325 60.000 0.00 0.00 0.00 4.61
5099 6193 2.228841 TACTCCCCGTACTCCCACCC 62.229 65.000 0.00 0.00 0.00 4.61
5100 6194 3.603080 TCCCCGTACTCCCACCCA 61.603 66.667 0.00 0.00 0.00 4.51
5101 6195 2.366435 CCCCGTACTCCCACCCAT 60.366 66.667 0.00 0.00 0.00 4.00
5102 6196 2.440817 CCCCGTACTCCCACCCATC 61.441 68.421 0.00 0.00 0.00 3.51
5103 6197 1.382695 CCCGTACTCCCACCCATCT 60.383 63.158 0.00 0.00 0.00 2.90
5104 6198 1.686325 CCCGTACTCCCACCCATCTG 61.686 65.000 0.00 0.00 0.00 2.90
5105 6199 1.144057 CGTACTCCCACCCATCTGC 59.856 63.158 0.00 0.00 0.00 4.26
5106 6200 1.527370 GTACTCCCACCCATCTGCC 59.473 63.158 0.00 0.00 0.00 4.85
5107 6201 0.983378 GTACTCCCACCCATCTGCCT 60.983 60.000 0.00 0.00 0.00 4.75
5108 6202 0.691078 TACTCCCACCCATCTGCCTC 60.691 60.000 0.00 0.00 0.00 4.70
5109 6203 1.692042 CTCCCACCCATCTGCCTCT 60.692 63.158 0.00 0.00 0.00 3.69
5110 6204 0.399091 CTCCCACCCATCTGCCTCTA 60.399 60.000 0.00 0.00 0.00 2.43
5111 6205 0.691078 TCCCACCCATCTGCCTCTAC 60.691 60.000 0.00 0.00 0.00 2.59
5112 6206 0.982852 CCCACCCATCTGCCTCTACA 60.983 60.000 0.00 0.00 0.00 2.74
5113 6207 1.135094 CCACCCATCTGCCTCTACAT 58.865 55.000 0.00 0.00 0.00 2.29
5114 6208 1.202734 CCACCCATCTGCCTCTACATG 60.203 57.143 0.00 0.00 0.00 3.21
5115 6209 1.487976 CACCCATCTGCCTCTACATGT 59.512 52.381 2.69 2.69 0.00 3.21
5116 6210 2.700371 CACCCATCTGCCTCTACATGTA 59.300 50.000 5.25 5.25 0.00 2.29
5117 6211 2.700897 ACCCATCTGCCTCTACATGTAC 59.299 50.000 0.08 0.00 0.00 2.90
5118 6212 2.037772 CCCATCTGCCTCTACATGTACC 59.962 54.545 0.08 0.00 0.00 3.34
5119 6213 2.288457 CCATCTGCCTCTACATGTACCG 60.288 54.545 0.08 0.00 0.00 4.02
5120 6214 2.430248 TCTGCCTCTACATGTACCGA 57.570 50.000 0.08 0.00 0.00 4.69
5121 6215 2.298610 TCTGCCTCTACATGTACCGAG 58.701 52.381 12.91 12.91 0.00 4.63
5122 6216 2.092592 TCTGCCTCTACATGTACCGAGA 60.093 50.000 18.91 9.20 0.00 4.04
5123 6217 2.292016 CTGCCTCTACATGTACCGAGAG 59.708 54.545 18.91 16.59 36.08 3.20
5124 6218 2.092592 TGCCTCTACATGTACCGAGAGA 60.093 50.000 20.32 8.81 38.14 3.10
5125 6219 2.950309 GCCTCTACATGTACCGAGAGAA 59.050 50.000 20.32 0.00 38.14 2.87
5126 6220 3.570550 GCCTCTACATGTACCGAGAGAAT 59.429 47.826 20.32 0.00 38.14 2.40
5127 6221 4.760715 GCCTCTACATGTACCGAGAGAATA 59.239 45.833 20.32 0.00 38.14 1.75
5128 6222 5.106475 GCCTCTACATGTACCGAGAGAATAG 60.106 48.000 20.32 8.32 38.14 1.73
5129 6223 5.998981 CCTCTACATGTACCGAGAGAATAGT 59.001 44.000 20.32 0.00 38.14 2.12
5130 6224 7.160049 CCTCTACATGTACCGAGAGAATAGTA 58.840 42.308 20.32 0.00 38.14 1.82
5131 6225 7.660617 CCTCTACATGTACCGAGAGAATAGTAA 59.339 40.741 20.32 0.00 38.14 2.24
5132 6226 8.969260 TCTACATGTACCGAGAGAATAGTAAA 57.031 34.615 0.08 0.00 0.00 2.01
5133 6227 9.399797 TCTACATGTACCGAGAGAATAGTAAAA 57.600 33.333 0.08 0.00 0.00 1.52
5136 6230 8.142551 ACATGTACCGAGAGAATAGTAAAATCC 58.857 37.037 0.00 0.00 0.00 3.01
5137 6231 6.732154 TGTACCGAGAGAATAGTAAAATCCG 58.268 40.000 0.00 0.00 0.00 4.18
5138 6232 4.618965 ACCGAGAGAATAGTAAAATCCGC 58.381 43.478 0.00 0.00 0.00 5.54
5139 6233 4.098960 ACCGAGAGAATAGTAAAATCCGCA 59.901 41.667 0.00 0.00 0.00 5.69
5140 6234 5.221461 ACCGAGAGAATAGTAAAATCCGCAT 60.221 40.000 0.00 0.00 0.00 4.73
5141 6235 5.119279 CCGAGAGAATAGTAAAATCCGCATG 59.881 44.000 0.00 0.00 0.00 4.06
5142 6236 5.388890 CGAGAGAATAGTAAAATCCGCATGC 60.389 44.000 7.91 7.91 0.00 4.06
5143 6237 5.368145 AGAGAATAGTAAAATCCGCATGCA 58.632 37.500 19.57 0.00 0.00 3.96
5144 6238 5.468072 AGAGAATAGTAAAATCCGCATGCAG 59.532 40.000 19.57 6.53 0.00 4.41
5145 6239 4.516698 AGAATAGTAAAATCCGCATGCAGG 59.483 41.667 19.57 19.08 0.00 4.85
5146 6240 2.418368 AGTAAAATCCGCATGCAGGA 57.582 45.000 26.03 26.03 42.69 3.86
5148 6242 2.620115 AGTAAAATCCGCATGCAGGATG 59.380 45.455 31.12 12.42 46.99 3.51
5160 6254 3.393472 CAGGATGCCTACCTGCTTC 57.607 57.895 0.00 0.00 46.30 3.86
5161 6255 4.887615 GGATGCCTACCTGCTTCC 57.112 61.111 2.70 2.70 44.99 3.46
5165 6259 3.710209 GATGCCTACCTGCTTCCATAT 57.290 47.619 0.00 0.00 31.24 1.78
5166 6260 4.026356 GATGCCTACCTGCTTCCATATT 57.974 45.455 0.00 0.00 31.24 1.28
5167 6261 3.213206 TGCCTACCTGCTTCCATATTG 57.787 47.619 0.00 0.00 0.00 1.90
5168 6262 1.882623 GCCTACCTGCTTCCATATTGC 59.117 52.381 0.00 0.00 0.00 3.56
5169 6263 2.749466 GCCTACCTGCTTCCATATTGCA 60.749 50.000 0.00 0.00 35.30 4.08
5170 6264 2.880890 CCTACCTGCTTCCATATTGCAC 59.119 50.000 0.00 0.00 32.91 4.57
5171 6265 1.767759 ACCTGCTTCCATATTGCACC 58.232 50.000 0.00 0.00 32.91 5.01
5172 6266 1.035139 CCTGCTTCCATATTGCACCC 58.965 55.000 0.00 0.00 32.91 4.61
5173 6267 1.410648 CCTGCTTCCATATTGCACCCT 60.411 52.381 0.00 0.00 32.91 4.34
5174 6268 1.952296 CTGCTTCCATATTGCACCCTC 59.048 52.381 0.00 0.00 32.91 4.30
5175 6269 1.284491 TGCTTCCATATTGCACCCTCA 59.716 47.619 0.00 0.00 0.00 3.86
5176 6270 1.952296 GCTTCCATATTGCACCCTCAG 59.048 52.381 0.00 0.00 0.00 3.35
5177 6271 2.421952 GCTTCCATATTGCACCCTCAGA 60.422 50.000 0.00 0.00 0.00 3.27
5178 6272 3.749954 GCTTCCATATTGCACCCTCAGAT 60.750 47.826 0.00 0.00 0.00 2.90
5179 6273 4.467769 CTTCCATATTGCACCCTCAGATT 58.532 43.478 0.00 0.00 0.00 2.40
5180 6274 3.824133 TCCATATTGCACCCTCAGATTG 58.176 45.455 0.00 0.00 0.00 2.67
5181 6275 3.202818 TCCATATTGCACCCTCAGATTGT 59.797 43.478 0.00 0.00 0.00 2.71
5182 6276 4.411869 TCCATATTGCACCCTCAGATTGTA 59.588 41.667 0.00 0.00 0.00 2.41
5183 6277 5.073554 TCCATATTGCACCCTCAGATTGTAT 59.926 40.000 0.00 0.00 0.00 2.29
5184 6278 5.771666 CCATATTGCACCCTCAGATTGTATT 59.228 40.000 0.00 0.00 0.00 1.89
5185 6279 6.072286 CCATATTGCACCCTCAGATTGTATTC 60.072 42.308 0.00 0.00 0.00 1.75
5186 6280 4.574674 TTGCACCCTCAGATTGTATTCT 57.425 40.909 0.00 0.00 0.00 2.40
5187 6281 4.142609 TGCACCCTCAGATTGTATTCTC 57.857 45.455 0.00 0.00 0.00 2.87
5188 6282 3.118261 TGCACCCTCAGATTGTATTCTCC 60.118 47.826 0.00 0.00 0.00 3.71
5189 6283 3.722147 CACCCTCAGATTGTATTCTCCG 58.278 50.000 0.00 0.00 0.00 4.63
5190 6284 3.133003 CACCCTCAGATTGTATTCTCCGT 59.867 47.826 0.00 0.00 0.00 4.69
5191 6285 4.341235 CACCCTCAGATTGTATTCTCCGTA 59.659 45.833 0.00 0.00 0.00 4.02
5192 6286 4.585162 ACCCTCAGATTGTATTCTCCGTAG 59.415 45.833 0.00 0.00 0.00 3.51
5193 6287 4.551388 CCTCAGATTGTATTCTCCGTAGC 58.449 47.826 0.00 0.00 0.00 3.58
5194 6288 4.038042 CCTCAGATTGTATTCTCCGTAGCA 59.962 45.833 0.00 0.00 0.00 3.49
5195 6289 4.933330 TCAGATTGTATTCTCCGTAGCAC 58.067 43.478 0.00 0.00 0.00 4.40
5196 6290 4.401202 TCAGATTGTATTCTCCGTAGCACA 59.599 41.667 0.00 0.00 0.00 4.57
5197 6291 5.069119 TCAGATTGTATTCTCCGTAGCACAT 59.931 40.000 0.00 0.00 0.00 3.21
5198 6292 5.176406 CAGATTGTATTCTCCGTAGCACATG 59.824 44.000 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 0.905357 AGAGGAAATGGGGACGACAG 59.095 55.000 0.00 0.00 0.00 3.51
20 21 0.612732 TGCTTGCAGAGGAAATGGGG 60.613 55.000 0.00 0.00 0.00 4.96
22 23 1.822990 ACATGCTTGCAGAGGAAATGG 59.177 47.619 0.87 0.00 0.00 3.16
60 61 4.612259 CGTCAAGCAGGACTTTGATGAAAG 60.612 45.833 2.83 2.83 43.79 2.62
98 99 8.659925 AGTTACTGAGCAATGAAGAATATCTG 57.340 34.615 0.00 0.00 0.00 2.90
114 115 5.360591 AGCGGAATATCCAAAGTTACTGAG 58.639 41.667 0.00 0.00 35.91 3.35
127 128 8.988934 TCAAGAACAATATGTTAGCGGAATATC 58.011 33.333 0.00 0.00 41.28 1.63
156 157 8.322906 TCACTGAAGTATTTGAGTAAACATGG 57.677 34.615 0.00 0.00 0.00 3.66
209 210 0.975040 AGAGTGCGAAGAGGGCATCT 60.975 55.000 0.00 0.00 43.19 2.90
235 236 6.797995 CACAAGTTTACGTTGTAAAAGTGTGT 59.202 34.615 22.87 14.41 39.36 3.72
274 275 3.105959 AGGCACAATTAAGGGCATTCT 57.894 42.857 0.00 0.00 0.00 2.40
314 315 6.089249 ACTTGATGAAACTTTGGATTCCAC 57.911 37.500 4.45 0.00 30.78 4.02
351 352 0.540597 GCCCCACTCCTGCTCTTTTT 60.541 55.000 0.00 0.00 0.00 1.94
364 365 0.322187 ACAAACGGTATCTGCCCCAC 60.322 55.000 0.00 0.00 0.00 4.61
372 373 2.599082 CTCGAGCTGAACAAACGGTATC 59.401 50.000 0.00 0.00 0.00 2.24
379 380 3.318275 ACACTACTCTCGAGCTGAACAAA 59.682 43.478 7.81 0.00 0.00 2.83
380 381 2.885266 ACACTACTCTCGAGCTGAACAA 59.115 45.455 7.81 0.00 0.00 2.83
421 422 9.612620 ACTGTTCATATCGAAAATTTCAAAGAC 57.387 29.630 6.53 0.00 34.69 3.01
492 493 9.632807 TGTATTTAGGAATTCCACAAAATTTCG 57.367 29.630 26.22 0.00 38.89 3.46
639 650 9.906660 GTTCCTACATGAATAGATCTTGTCTAG 57.093 37.037 0.00 0.00 43.28 2.43
695 706 7.399245 AAAGTTTGTAAAGTTTGACTAGGCA 57.601 32.000 0.00 0.00 39.40 4.75
817 828 8.066595 CAGAAAGAAAAGTATCAACACTCACAG 58.933 37.037 0.00 0.00 0.00 3.66
837 848 3.319122 AGTTTGGCCAAGCTTACAGAAAG 59.681 43.478 27.42 0.00 38.32 2.62
848 860 7.630242 TCAAAATATCTCTAGTTTGGCCAAG 57.370 36.000 19.48 7.10 41.16 3.61
1004 1020 2.283173 CCCCGCCTCTGCCTTTTT 60.283 61.111 0.00 0.00 0.00 1.94
1036 1052 1.834822 GGTCTCGAGGGGATGGAGG 60.835 68.421 13.56 0.00 34.67 4.30
1037 1053 0.825840 GAGGTCTCGAGGGGATGGAG 60.826 65.000 13.56 0.00 35.20 3.86
1038 1054 1.230497 GAGGTCTCGAGGGGATGGA 59.770 63.158 13.56 0.00 0.00 3.41
1039 1055 1.075970 TGAGGTCTCGAGGGGATGG 60.076 63.158 13.56 0.00 0.00 3.51
1040 1056 1.395826 GGTGAGGTCTCGAGGGGATG 61.396 65.000 13.56 0.00 0.00 3.51
1041 1057 1.075896 GGTGAGGTCTCGAGGGGAT 60.076 63.158 13.56 0.00 0.00 3.85
1066 1082 9.212641 GGTGATTCGTGTGTAGTATACTCTATA 57.787 37.037 9.12 0.00 43.54 1.31
1067 1083 7.095313 CGGTGATTCGTGTGTAGTATACTCTAT 60.095 40.741 9.12 0.00 43.54 1.98
1068 1084 6.201615 CGGTGATTCGTGTGTAGTATACTCTA 59.798 42.308 9.12 0.00 43.54 2.43
1069 1085 5.007430 CGGTGATTCGTGTGTAGTATACTCT 59.993 44.000 9.12 0.00 43.54 3.24
1070 1086 5.203370 CGGTGATTCGTGTGTAGTATACTC 58.797 45.833 9.12 2.17 43.54 2.59
1071 1087 4.036027 CCGGTGATTCGTGTGTAGTATACT 59.964 45.833 10.87 10.87 43.54 2.12
1072 1088 4.285292 CCGGTGATTCGTGTGTAGTATAC 58.715 47.826 0.00 0.00 43.42 1.47
1073 1089 3.243168 GCCGGTGATTCGTGTGTAGTATA 60.243 47.826 1.90 0.00 0.00 1.47
1268 1300 1.831736 GAGGAAGGAAGGACCGAATGA 59.168 52.381 0.00 0.00 44.74 2.57
1269 1301 1.134371 GGAGGAAGGAAGGACCGAATG 60.134 57.143 0.00 0.00 44.74 2.67
1274 1306 2.585153 GCGGAGGAAGGAAGGACC 59.415 66.667 0.00 0.00 39.35 4.46
1275 1307 2.168666 AACGCGGAGGAAGGAAGGAC 62.169 60.000 12.47 0.00 0.00 3.85
1278 1310 1.912371 GCAAACGCGGAGGAAGGAAG 61.912 60.000 12.47 0.00 0.00 3.46
1279 1311 1.964373 GCAAACGCGGAGGAAGGAA 60.964 57.895 12.47 0.00 0.00 3.36
1345 1392 4.027674 TGGCTAGATCGAAGCTCTATCT 57.972 45.455 18.69 9.56 39.97 1.98
1441 1507 7.602753 ACTCAATGCTAGTTAAATTTTGACCC 58.397 34.615 0.00 0.00 0.00 4.46
1452 1518 3.107601 AGGCTGGACTCAATGCTAGTTA 58.892 45.455 0.00 0.00 0.00 2.24
1454 1520 1.577736 AGGCTGGACTCAATGCTAGT 58.422 50.000 0.00 0.00 0.00 2.57
1455 1521 3.827008 TTAGGCTGGACTCAATGCTAG 57.173 47.619 0.00 0.00 0.00 3.42
1456 1522 4.778213 AATTAGGCTGGACTCAATGCTA 57.222 40.909 0.00 0.00 0.00 3.49
1458 1524 4.455606 AGTAATTAGGCTGGACTCAATGC 58.544 43.478 0.00 0.00 0.00 3.56
1459 1525 6.115446 TGAAGTAATTAGGCTGGACTCAATG 58.885 40.000 0.00 0.00 0.00 2.82
1463 1543 8.613482 GTTAAATGAAGTAATTAGGCTGGACTC 58.387 37.037 0.00 0.00 0.00 3.36
1515 1598 4.452114 TGTGACATCTGTATGTTGAACTGC 59.548 41.667 0.00 0.00 46.49 4.40
1518 1601 6.299023 TGTTGTGACATCTGTATGTTGAAC 57.701 37.500 0.00 0.00 46.49 3.18
1521 1604 5.139482 CGTTGTTGTGACATCTGTATGTTG 58.861 41.667 0.00 0.00 46.49 3.33
1526 1609 4.870991 TCAAACGTTGTTGTGACATCTGTA 59.129 37.500 0.00 0.00 35.29 2.74
1536 1619 4.315803 CCTAGGAGATCAAACGTTGTTGT 58.684 43.478 1.05 0.00 0.00 3.32
1537 1620 3.684788 CCCTAGGAGATCAAACGTTGTTG 59.315 47.826 11.48 0.00 0.00 3.33
1538 1621 3.307480 CCCCTAGGAGATCAAACGTTGTT 60.307 47.826 11.48 0.00 33.47 2.83
1566 1650 6.149474 GCACAGTACTAATTAATAGCATGGGG 59.851 42.308 0.00 0.00 34.78 4.96
1567 1651 6.149474 GGCACAGTACTAATTAATAGCATGGG 59.851 42.308 0.00 0.00 34.78 4.00
1568 1652 6.128553 CGGCACAGTACTAATTAATAGCATGG 60.129 42.308 0.00 0.00 34.78 3.66
1570 1654 5.932303 CCGGCACAGTACTAATTAATAGCAT 59.068 40.000 0.00 0.00 34.78 3.79
1571 1655 5.294356 CCGGCACAGTACTAATTAATAGCA 58.706 41.667 0.00 0.00 34.78 3.49
1572 1656 4.689345 CCCGGCACAGTACTAATTAATAGC 59.311 45.833 0.00 0.00 34.78 2.97
1573 1657 6.092955 TCCCGGCACAGTACTAATTAATAG 57.907 41.667 0.00 0.00 37.66 1.73
1574 1658 6.460781 CATCCCGGCACAGTACTAATTAATA 58.539 40.000 0.00 0.00 0.00 0.98
1575 1659 5.305585 CATCCCGGCACAGTACTAATTAAT 58.694 41.667 0.00 0.00 0.00 1.40
1576 1660 4.699637 CATCCCGGCACAGTACTAATTAA 58.300 43.478 0.00 0.00 0.00 1.40
1577 1661 3.493699 GCATCCCGGCACAGTACTAATTA 60.494 47.826 0.00 0.00 0.00 1.40
1578 1662 2.745152 GCATCCCGGCACAGTACTAATT 60.745 50.000 0.00 0.00 0.00 1.40
1579 1663 1.202651 GCATCCCGGCACAGTACTAAT 60.203 52.381 0.00 0.00 0.00 1.73
1613 1697 4.828387 AGGAAGAAGTCTAGTTTCAGTCGT 59.172 41.667 10.77 7.28 0.00 4.34
1614 1698 5.379732 AGGAAGAAGTCTAGTTTCAGTCG 57.620 43.478 10.77 0.00 0.00 4.18
1615 1699 6.754675 GCATAGGAAGAAGTCTAGTTTCAGTC 59.245 42.308 10.77 7.95 0.00 3.51
1616 1700 6.211584 TGCATAGGAAGAAGTCTAGTTTCAGT 59.788 38.462 10.77 1.24 0.00 3.41
1617 1701 6.634805 TGCATAGGAAGAAGTCTAGTTTCAG 58.365 40.000 10.77 0.00 0.00 3.02
1618 1702 6.211584 ACTGCATAGGAAGAAGTCTAGTTTCA 59.788 38.462 10.77 0.00 0.00 2.69
1619 1703 6.635755 ACTGCATAGGAAGAAGTCTAGTTTC 58.364 40.000 0.00 0.00 0.00 2.78
1620 1704 6.613153 ACTGCATAGGAAGAAGTCTAGTTT 57.387 37.500 0.00 0.00 0.00 2.66
1661 1745 7.578310 ATTCTGAACATTGGAGGAATACATG 57.422 36.000 0.00 0.00 0.00 3.21
1664 1750 7.630924 CGTAATTCTGAACATTGGAGGAATAC 58.369 38.462 0.00 0.00 0.00 1.89
1673 1761 4.082787 ACCAAGGCGTAATTCTGAACATTG 60.083 41.667 0.00 0.00 0.00 2.82
1775 1879 2.430694 TCTGAGATGTATGGTGGAACGG 59.569 50.000 0.00 0.00 38.12 4.44
1826 1979 5.184287 TCAGACATTCCATTCTACACGTGTA 59.816 40.000 25.88 25.88 0.00 2.90
1827 1980 4.021456 TCAGACATTCCATTCTACACGTGT 60.021 41.667 26.52 26.52 0.00 4.49
1828 1981 4.494484 TCAGACATTCCATTCTACACGTG 58.506 43.478 15.48 15.48 0.00 4.49
1912 2066 7.525688 TGCAGTATAAATCTTGTCTTCGAAG 57.474 36.000 19.35 19.35 0.00 3.79
1960 2114 2.202756 CGAGTAGCCGCCAAGACC 60.203 66.667 0.00 0.00 0.00 3.85
2156 2519 5.079643 ACCAACATTTCTGGTTGATTAGCT 58.920 37.500 6.83 0.00 45.13 3.32
2172 2535 1.993956 TAGTGGCTTGCAACCAACAT 58.006 45.000 18.42 11.95 39.39 2.71
2377 2746 5.387279 TCCAAGCGAAAACGATAAAATGTC 58.613 37.500 0.00 0.00 0.00 3.06
2669 3038 5.677319 AGTGGAGAAGGATCGAATTACAA 57.323 39.130 0.00 0.00 0.00 2.41
2728 3272 2.265182 ATTGGCCCGGAAACACACG 61.265 57.895 0.73 0.00 0.00 4.49
2737 3281 1.809207 GATGACAACATTGGCCCGG 59.191 57.895 0.00 0.00 36.82 5.73
2742 3286 4.024302 CAGATGGATCGATGACAACATTGG 60.024 45.833 0.54 0.00 38.18 3.16
2771 3315 7.082602 CACTATGAATATGGCTGAATCAAAGC 58.917 38.462 0.00 0.00 40.06 3.51
3057 3602 5.306114 ACTAATAGCATGGTTTCCCCTAC 57.694 43.478 1.12 0.00 0.00 3.18
3137 3688 6.108687 TGACTTGTGATCATGTGAGGAATAC 58.891 40.000 0.00 0.00 33.16 1.89
3244 3802 0.383231 GGGCAGCCAATTCTCAATCG 59.617 55.000 15.19 0.00 0.00 3.34
3282 3840 6.598503 TGAAATATCTGGCATCTGAGATGTT 58.401 36.000 22.23 7.26 33.02 2.71
3570 4201 0.546598 GTCACCCAAGGTATCCCAGG 59.453 60.000 0.00 0.00 32.11 4.45
3571 4202 1.584724 AGTCACCCAAGGTATCCCAG 58.415 55.000 0.00 0.00 32.11 4.45
3604 4236 5.048083 CAGGTAAAGAAAACATTGGCAGCTA 60.048 40.000 0.00 0.00 0.00 3.32
3717 4350 0.603707 ATGAGTGTGGGCGTTGACAG 60.604 55.000 0.00 0.00 0.00 3.51
3840 4476 7.936950 TGATCATCGTTTCAGTCTATCATTC 57.063 36.000 0.00 0.00 0.00 2.67
3851 4487 4.522405 ACCAAAACCATGATCATCGTTTCA 59.478 37.500 25.36 0.00 32.35 2.69
3910 4546 0.692419 AGTTCCGCCCATCAGGAGAT 60.692 55.000 0.00 0.00 37.72 2.75
4031 4667 7.989741 CCTGTTATGTGTTCTTCTCCATAGATT 59.010 37.037 0.00 0.00 0.00 2.40
4104 4747 5.769367 TGCAGTACTCAGTTTACTGTACAG 58.231 41.667 21.44 21.44 45.62 2.74
4222 4875 8.086522 AGATGCAAAATTCTTATACATGATGCC 58.913 33.333 0.00 0.00 0.00 4.40
4290 4943 0.108520 GCCCTTACCGTGTCGATCAA 60.109 55.000 0.00 0.00 0.00 2.57
4314 4967 1.284982 CGGCGGTCTGAACACTGAAG 61.285 60.000 0.00 0.00 0.00 3.02
4375 5029 5.389098 CGACCATACTAACAGACAAAAACCG 60.389 44.000 0.00 0.00 0.00 4.44
4493 5195 8.977412 CATAAACCAGGGGTCAGTAAAATATTT 58.023 33.333 0.00 0.00 33.12 1.40
4528 5262 5.480073 CCCTGTTCATCCAATCAACCTTTTA 59.520 40.000 0.00 0.00 0.00 1.52
4726 5484 0.335019 AACCACTTTGGATAGGGCCC 59.665 55.000 16.46 16.46 40.96 5.80
4748 5506 3.301794 AAGCTGATGCCATATCACCAA 57.698 42.857 0.00 0.00 40.80 3.67
4957 6051 4.707563 CACACTCATGCGTATTCGAAAAA 58.292 39.130 0.00 0.00 39.71 1.94
4958 6052 3.424302 GCACACTCATGCGTATTCGAAAA 60.424 43.478 0.00 0.00 39.71 2.29
4959 6053 2.093625 GCACACTCATGCGTATTCGAAA 59.906 45.455 0.00 0.00 39.71 3.46
4960 6054 1.658596 GCACACTCATGCGTATTCGAA 59.341 47.619 0.00 0.00 39.71 3.71
4961 6055 1.277326 GCACACTCATGCGTATTCGA 58.723 50.000 0.00 0.00 39.71 3.71
4962 6056 3.786955 GCACACTCATGCGTATTCG 57.213 52.632 0.00 0.00 35.50 3.34
4969 6063 6.311200 TCAATATATGATACGCACACTCATGC 59.689 38.462 0.00 0.00 36.21 4.06
4970 6064 7.816945 TCAATATATGATACGCACACTCATG 57.183 36.000 0.00 0.00 31.50 3.07
4984 6078 7.967170 TCCCCCTTTCCTTCTATCAATATATGA 59.033 37.037 0.00 0.00 43.67 2.15
4985 6079 8.162848 TCCCCCTTTCCTTCTATCAATATATG 57.837 38.462 0.00 0.00 0.00 1.78
4986 6080 8.772647 TTCCCCCTTTCCTTCTATCAATATAT 57.227 34.615 0.00 0.00 0.00 0.86
4987 6081 8.022666 TCTTCCCCCTTTCCTTCTATCAATATA 58.977 37.037 0.00 0.00 0.00 0.86
4988 6082 6.857222 TCTTCCCCCTTTCCTTCTATCAATAT 59.143 38.462 0.00 0.00 0.00 1.28
4989 6083 6.217297 TCTTCCCCCTTTCCTTCTATCAATA 58.783 40.000 0.00 0.00 0.00 1.90
4990 6084 5.046522 TCTTCCCCCTTTCCTTCTATCAAT 58.953 41.667 0.00 0.00 0.00 2.57
4991 6085 4.444611 TCTTCCCCCTTTCCTTCTATCAA 58.555 43.478 0.00 0.00 0.00 2.57
4992 6086 4.088634 TCTTCCCCCTTTCCTTCTATCA 57.911 45.455 0.00 0.00 0.00 2.15
4993 6087 5.194432 GTTTCTTCCCCCTTTCCTTCTATC 58.806 45.833 0.00 0.00 0.00 2.08
4994 6088 4.017407 GGTTTCTTCCCCCTTTCCTTCTAT 60.017 45.833 0.00 0.00 0.00 1.98
4995 6089 3.332783 GGTTTCTTCCCCCTTTCCTTCTA 59.667 47.826 0.00 0.00 0.00 2.10
4996 6090 2.110188 GGTTTCTTCCCCCTTTCCTTCT 59.890 50.000 0.00 0.00 0.00 2.85
4997 6091 2.526432 GGTTTCTTCCCCCTTTCCTTC 58.474 52.381 0.00 0.00 0.00 3.46
4998 6092 1.149288 GGGTTTCTTCCCCCTTTCCTT 59.851 52.381 0.00 0.00 41.54 3.36
4999 6093 0.784495 GGGTTTCTTCCCCCTTTCCT 59.216 55.000 0.00 0.00 41.54 3.36
5000 6094 3.376082 GGGTTTCTTCCCCCTTTCC 57.624 57.895 0.00 0.00 41.54 3.13
5007 6101 1.303074 GTGGACGGGGTTTCTTCCC 60.303 63.158 0.00 0.00 46.31 3.97
5008 6102 0.179012 TTGTGGACGGGGTTTCTTCC 60.179 55.000 0.00 0.00 0.00 3.46
5009 6103 1.905637 ATTGTGGACGGGGTTTCTTC 58.094 50.000 0.00 0.00 0.00 2.87
5010 6104 3.732048 ATATTGTGGACGGGGTTTCTT 57.268 42.857 0.00 0.00 0.00 2.52
5011 6105 3.732048 AATATTGTGGACGGGGTTTCT 57.268 42.857 0.00 0.00 0.00 2.52
5012 6106 4.701171 TGTAAATATTGTGGACGGGGTTTC 59.299 41.667 0.00 0.00 0.00 2.78
5013 6107 4.664392 TGTAAATATTGTGGACGGGGTTT 58.336 39.130 0.00 0.00 0.00 3.27
5014 6108 4.304048 TGTAAATATTGTGGACGGGGTT 57.696 40.909 0.00 0.00 0.00 4.11
5015 6109 4.204012 CATGTAAATATTGTGGACGGGGT 58.796 43.478 0.00 0.00 0.00 4.95
5016 6110 3.568007 CCATGTAAATATTGTGGACGGGG 59.432 47.826 0.00 0.00 31.59 5.73
5017 6111 3.004315 GCCATGTAAATATTGTGGACGGG 59.996 47.826 11.49 5.50 31.59 5.28
5018 6112 3.303725 CGCCATGTAAATATTGTGGACGG 60.304 47.826 11.49 1.31 31.59 4.79
5019 6113 3.848191 GCGCCATGTAAATATTGTGGACG 60.848 47.826 0.00 13.18 34.75 4.79
5020 6114 3.315191 AGCGCCATGTAAATATTGTGGAC 59.685 43.478 2.29 5.03 31.59 4.02
5021 6115 3.550820 AGCGCCATGTAAATATTGTGGA 58.449 40.909 2.29 0.00 31.59 4.02
5022 6116 3.988379 AGCGCCATGTAAATATTGTGG 57.012 42.857 2.29 0.00 0.00 4.17
5023 6117 5.681105 GTGTAAGCGCCATGTAAATATTGTG 59.319 40.000 2.29 0.00 0.00 3.33
5024 6118 5.355630 TGTGTAAGCGCCATGTAAATATTGT 59.644 36.000 2.29 0.00 0.00 2.71
5025 6119 5.815850 TGTGTAAGCGCCATGTAAATATTG 58.184 37.500 2.29 0.00 0.00 1.90
5026 6120 6.094881 AGTTGTGTAAGCGCCATGTAAATATT 59.905 34.615 2.29 0.00 0.00 1.28
5027 6121 5.588648 AGTTGTGTAAGCGCCATGTAAATAT 59.411 36.000 2.29 0.00 0.00 1.28
5028 6122 4.938832 AGTTGTGTAAGCGCCATGTAAATA 59.061 37.500 2.29 0.00 0.00 1.40
5029 6123 3.756434 AGTTGTGTAAGCGCCATGTAAAT 59.244 39.130 2.29 0.00 0.00 1.40
5030 6124 3.142951 AGTTGTGTAAGCGCCATGTAAA 58.857 40.909 2.29 0.00 0.00 2.01
5031 6125 2.739913 GAGTTGTGTAAGCGCCATGTAA 59.260 45.455 2.29 0.00 0.00 2.41
5032 6126 2.343101 GAGTTGTGTAAGCGCCATGTA 58.657 47.619 2.29 0.00 0.00 2.29
5033 6127 1.156736 GAGTTGTGTAAGCGCCATGT 58.843 50.000 2.29 0.00 0.00 3.21
5034 6128 0.095245 CGAGTTGTGTAAGCGCCATG 59.905 55.000 2.29 0.00 0.00 3.66
5035 6129 0.037697 TCGAGTTGTGTAAGCGCCAT 60.038 50.000 2.29 0.00 0.00 4.40
5036 6130 0.037697 ATCGAGTTGTGTAAGCGCCA 60.038 50.000 2.29 0.00 0.00 5.69
5037 6131 0.645868 GATCGAGTTGTGTAAGCGCC 59.354 55.000 2.29 0.00 0.00 6.53
5038 6132 0.645868 GGATCGAGTTGTGTAAGCGC 59.354 55.000 0.00 0.00 0.00 5.92
5039 6133 1.654105 GTGGATCGAGTTGTGTAAGCG 59.346 52.381 0.00 0.00 0.00 4.68
5040 6134 2.000447 GGTGGATCGAGTTGTGTAAGC 59.000 52.381 0.00 0.00 0.00 3.09
5041 6135 2.259618 CGGTGGATCGAGTTGTGTAAG 58.740 52.381 0.00 0.00 0.00 2.34
5042 6136 1.614903 ACGGTGGATCGAGTTGTGTAA 59.385 47.619 0.00 0.00 0.00 2.41
5043 6137 1.068125 CACGGTGGATCGAGTTGTGTA 60.068 52.381 0.00 0.00 0.00 2.90
5044 6138 0.319555 CACGGTGGATCGAGTTGTGT 60.320 55.000 0.00 0.00 0.00 3.72
5045 6139 0.319555 ACACGGTGGATCGAGTTGTG 60.320 55.000 13.48 0.00 30.40 3.33
5046 6140 0.038526 GACACGGTGGATCGAGTTGT 60.039 55.000 13.48 0.00 34.41 3.32
5047 6141 0.038618 TGACACGGTGGATCGAGTTG 60.039 55.000 13.48 0.00 34.41 3.16
5048 6142 0.243907 CTGACACGGTGGATCGAGTT 59.756 55.000 13.48 0.00 34.41 3.01
5049 6143 1.883732 CTGACACGGTGGATCGAGT 59.116 57.895 13.48 0.00 36.73 4.18
5050 6144 1.517257 GCTGACACGGTGGATCGAG 60.517 63.158 13.48 1.95 0.00 4.04
5051 6145 0.678684 TAGCTGACACGGTGGATCGA 60.679 55.000 13.48 0.00 0.00 3.59
5052 6146 0.385751 ATAGCTGACACGGTGGATCG 59.614 55.000 13.48 0.00 0.00 3.69
5053 6147 2.029828 CCTATAGCTGACACGGTGGATC 60.030 54.545 13.48 2.41 0.00 3.36
5054 6148 1.964223 CCTATAGCTGACACGGTGGAT 59.036 52.381 13.48 0.00 0.00 3.41
5055 6149 1.341679 ACCTATAGCTGACACGGTGGA 60.342 52.381 13.48 0.00 0.00 4.02
5056 6150 1.112113 ACCTATAGCTGACACGGTGG 58.888 55.000 13.48 0.00 0.00 4.61
5057 6151 1.202417 CCACCTATAGCTGACACGGTG 60.202 57.143 6.58 6.58 41.09 4.94
5058 6152 1.112113 CCACCTATAGCTGACACGGT 58.888 55.000 0.00 0.00 0.00 4.83
5059 6153 1.399714 TCCACCTATAGCTGACACGG 58.600 55.000 0.00 0.00 0.00 4.94
5060 6154 3.735237 AATCCACCTATAGCTGACACG 57.265 47.619 0.00 0.00 0.00 4.49
5061 6155 5.279056 GGAGTAATCCACCTATAGCTGACAC 60.279 48.000 3.85 0.00 0.00 3.67
5062 6156 4.833380 GGAGTAATCCACCTATAGCTGACA 59.167 45.833 3.85 0.00 0.00 3.58
5063 6157 4.221041 GGGAGTAATCCACCTATAGCTGAC 59.779 50.000 12.01 0.00 0.00 3.51
5064 6158 4.417437 GGGAGTAATCCACCTATAGCTGA 58.583 47.826 12.01 0.00 0.00 4.26
5065 6159 3.515901 GGGGAGTAATCCACCTATAGCTG 59.484 52.174 12.01 0.00 0.00 4.24
5066 6160 3.792515 GGGGAGTAATCCACCTATAGCT 58.207 50.000 12.01 0.00 0.00 3.32
5067 6161 2.496470 CGGGGAGTAATCCACCTATAGC 59.504 54.545 12.01 0.00 0.00 2.97
5068 6162 3.775910 ACGGGGAGTAATCCACCTATAG 58.224 50.000 12.01 0.00 0.00 1.31
5069 6163 3.909427 ACGGGGAGTAATCCACCTATA 57.091 47.619 12.01 0.00 0.00 1.31
5070 6164 2.789323 ACGGGGAGTAATCCACCTAT 57.211 50.000 12.01 0.00 0.00 2.57
5071 6165 2.515429 AGTACGGGGAGTAATCCACCTA 59.485 50.000 12.01 0.00 37.02 3.08
5072 6166 1.290130 AGTACGGGGAGTAATCCACCT 59.710 52.381 12.01 0.00 37.02 4.00
5073 6167 1.685517 GAGTACGGGGAGTAATCCACC 59.314 57.143 12.01 8.92 42.68 4.61
5077 6171 1.685517 GTGGGAGTACGGGGAGTAATC 59.314 57.143 0.00 0.00 46.38 1.75
5078 6172 1.690527 GGTGGGAGTACGGGGAGTAAT 60.691 57.143 0.00 0.00 37.02 1.89
5079 6173 0.324645 GGTGGGAGTACGGGGAGTAA 60.325 60.000 0.00 0.00 37.02 2.24
5080 6174 1.307647 GGTGGGAGTACGGGGAGTA 59.692 63.158 0.00 0.00 0.00 2.59
5081 6175 2.038490 GGTGGGAGTACGGGGAGT 59.962 66.667 0.00 0.00 0.00 3.85
5082 6176 2.762875 GGGTGGGAGTACGGGGAG 60.763 72.222 0.00 0.00 0.00 4.30
5083 6177 2.884179 GATGGGTGGGAGTACGGGGA 62.884 65.000 0.00 0.00 0.00 4.81
5084 6178 2.366435 ATGGGTGGGAGTACGGGG 60.366 66.667 0.00 0.00 0.00 5.73
5085 6179 1.382695 AGATGGGTGGGAGTACGGG 60.383 63.158 0.00 0.00 0.00 5.28
5086 6180 1.823295 CAGATGGGTGGGAGTACGG 59.177 63.158 0.00 0.00 0.00 4.02
5087 6181 1.144057 GCAGATGGGTGGGAGTACG 59.856 63.158 0.00 0.00 0.00 3.67
5088 6182 0.983378 AGGCAGATGGGTGGGAGTAC 60.983 60.000 0.00 0.00 0.00 2.73
5089 6183 0.691078 GAGGCAGATGGGTGGGAGTA 60.691 60.000 0.00 0.00 0.00 2.59
5090 6184 1.997874 GAGGCAGATGGGTGGGAGT 60.998 63.158 0.00 0.00 0.00 3.85
5091 6185 0.399091 TAGAGGCAGATGGGTGGGAG 60.399 60.000 0.00 0.00 0.00 4.30
5092 6186 0.691078 GTAGAGGCAGATGGGTGGGA 60.691 60.000 0.00 0.00 0.00 4.37
5093 6187 0.982852 TGTAGAGGCAGATGGGTGGG 60.983 60.000 0.00 0.00 0.00 4.61
5094 6188 1.135094 ATGTAGAGGCAGATGGGTGG 58.865 55.000 0.00 0.00 0.00 4.61
5095 6189 1.487976 ACATGTAGAGGCAGATGGGTG 59.512 52.381 0.00 0.00 0.00 4.61
5096 6190 1.885049 ACATGTAGAGGCAGATGGGT 58.115 50.000 0.00 0.00 0.00 4.51
5097 6191 2.037772 GGTACATGTAGAGGCAGATGGG 59.962 54.545 5.62 0.00 0.00 4.00
5098 6192 2.288457 CGGTACATGTAGAGGCAGATGG 60.288 54.545 5.62 0.00 0.00 3.51
5099 6193 2.623416 TCGGTACATGTAGAGGCAGATG 59.377 50.000 5.62 0.00 0.00 2.90
5100 6194 2.887783 CTCGGTACATGTAGAGGCAGAT 59.112 50.000 5.62 0.00 0.00 2.90
5101 6195 2.092592 TCTCGGTACATGTAGAGGCAGA 60.093 50.000 17.52 7.70 0.00 4.26
5102 6196 2.292016 CTCTCGGTACATGTAGAGGCAG 59.708 54.545 17.52 8.51 33.37 4.85
5103 6197 2.092592 TCTCTCGGTACATGTAGAGGCA 60.093 50.000 18.83 6.66 36.85 4.75
5104 6198 2.573369 TCTCTCGGTACATGTAGAGGC 58.427 52.381 18.83 3.62 36.85 4.70
5105 6199 5.998981 ACTATTCTCTCGGTACATGTAGAGG 59.001 44.000 18.83 11.45 36.85 3.69
5106 6200 8.604640 TTACTATTCTCTCGGTACATGTAGAG 57.395 38.462 14.69 14.69 37.42 2.43
5107 6201 8.969260 TTTACTATTCTCTCGGTACATGTAGA 57.031 34.615 5.62 0.45 0.00 2.59
5110 6204 8.142551 GGATTTTACTATTCTCTCGGTACATGT 58.857 37.037 2.69 2.69 0.00 3.21
5111 6205 7.326305 CGGATTTTACTATTCTCTCGGTACATG 59.674 40.741 0.00 0.00 0.00 3.21
5112 6206 7.368833 CGGATTTTACTATTCTCTCGGTACAT 58.631 38.462 0.00 0.00 0.00 2.29
5113 6207 6.732154 CGGATTTTACTATTCTCTCGGTACA 58.268 40.000 0.00 0.00 0.00 2.90
5114 6208 5.628606 GCGGATTTTACTATTCTCTCGGTAC 59.371 44.000 0.00 0.00 0.00 3.34
5115 6209 5.300034 TGCGGATTTTACTATTCTCTCGGTA 59.700 40.000 0.00 0.00 0.00 4.02
5116 6210 4.098960 TGCGGATTTTACTATTCTCTCGGT 59.901 41.667 0.00 0.00 0.00 4.69
5117 6211 4.617959 TGCGGATTTTACTATTCTCTCGG 58.382 43.478 0.00 0.00 0.00 4.63
5118 6212 5.388890 GCATGCGGATTTTACTATTCTCTCG 60.389 44.000 0.00 0.00 0.00 4.04
5119 6213 5.466728 TGCATGCGGATTTTACTATTCTCTC 59.533 40.000 14.09 0.00 0.00 3.20
5120 6214 5.368145 TGCATGCGGATTTTACTATTCTCT 58.632 37.500 14.09 0.00 0.00 3.10
5121 6215 5.334414 CCTGCATGCGGATTTTACTATTCTC 60.334 44.000 28.32 0.00 0.00 2.87
5122 6216 4.516698 CCTGCATGCGGATTTTACTATTCT 59.483 41.667 28.32 0.00 0.00 2.40
5123 6217 4.515191 TCCTGCATGCGGATTTTACTATTC 59.485 41.667 28.32 0.00 0.00 1.75
5124 6218 4.460263 TCCTGCATGCGGATTTTACTATT 58.540 39.130 28.32 0.00 0.00 1.73
5125 6219 4.085357 TCCTGCATGCGGATTTTACTAT 57.915 40.909 28.32 0.00 0.00 2.12
5126 6220 3.552132 TCCTGCATGCGGATTTTACTA 57.448 42.857 28.32 3.45 0.00 1.82
5127 6221 2.418368 TCCTGCATGCGGATTTTACT 57.582 45.000 28.32 0.00 0.00 2.24
5128 6222 3.004024 CATCCTGCATGCGGATTTTAC 57.996 47.619 29.44 0.00 39.20 2.01
5143 6237 2.225792 GGAAGCAGGTAGGCATCCT 58.774 57.895 2.45 0.00 45.67 3.24
5144 6238 4.887615 GGAAGCAGGTAGGCATCC 57.112 61.111 0.00 0.00 43.47 3.51
5145 6239 3.710209 ATATGGAAGCAGGTAGGCATC 57.290 47.619 0.00 0.00 35.83 3.91
5146 6240 3.759581 CAATATGGAAGCAGGTAGGCAT 58.240 45.455 0.00 0.00 35.83 4.40
5147 6241 2.749466 GCAATATGGAAGCAGGTAGGCA 60.749 50.000 0.00 0.00 35.83 4.75
5148 6242 1.882623 GCAATATGGAAGCAGGTAGGC 59.117 52.381 0.00 0.00 0.00 3.93
5149 6243 2.880890 GTGCAATATGGAAGCAGGTAGG 59.119 50.000 0.00 0.00 39.21 3.18
5150 6244 2.880890 GGTGCAATATGGAAGCAGGTAG 59.119 50.000 0.00 0.00 39.21 3.18
5151 6245 2.422803 GGGTGCAATATGGAAGCAGGTA 60.423 50.000 0.00 0.00 39.21 3.08
5152 6246 1.686115 GGGTGCAATATGGAAGCAGGT 60.686 52.381 0.00 0.00 39.21 4.00
5153 6247 1.035139 GGGTGCAATATGGAAGCAGG 58.965 55.000 0.00 0.00 39.21 4.85
5154 6248 1.952296 GAGGGTGCAATATGGAAGCAG 59.048 52.381 0.00 0.00 39.21 4.24
5155 6249 1.284491 TGAGGGTGCAATATGGAAGCA 59.716 47.619 0.00 0.00 35.63 3.91
5156 6250 1.952296 CTGAGGGTGCAATATGGAAGC 59.048 52.381 0.00 0.00 0.00 3.86
5157 6251 3.565764 TCTGAGGGTGCAATATGGAAG 57.434 47.619 0.00 0.00 0.00 3.46
5158 6252 4.209538 CAATCTGAGGGTGCAATATGGAA 58.790 43.478 0.00 0.00 0.00 3.53
5159 6253 3.202818 ACAATCTGAGGGTGCAATATGGA 59.797 43.478 0.00 0.00 0.00 3.41
5160 6254 3.559069 ACAATCTGAGGGTGCAATATGG 58.441 45.455 0.00 0.00 0.00 2.74
5161 6255 6.713903 AGAATACAATCTGAGGGTGCAATATG 59.286 38.462 0.00 0.00 0.00 1.78
5162 6256 6.845908 AGAATACAATCTGAGGGTGCAATAT 58.154 36.000 0.00 0.00 0.00 1.28
5163 6257 6.252599 AGAATACAATCTGAGGGTGCAATA 57.747 37.500 0.00 0.00 0.00 1.90
5164 6258 5.121380 AGAATACAATCTGAGGGTGCAAT 57.879 39.130 0.00 0.00 0.00 3.56
5165 6259 4.517285 GAGAATACAATCTGAGGGTGCAA 58.483 43.478 0.00 0.00 0.00 4.08
5166 6260 3.118261 GGAGAATACAATCTGAGGGTGCA 60.118 47.826 0.00 0.00 0.00 4.57
5167 6261 3.471680 GGAGAATACAATCTGAGGGTGC 58.528 50.000 0.00 0.00 0.00 5.01
5168 6262 3.133003 ACGGAGAATACAATCTGAGGGTG 59.867 47.826 0.00 0.00 0.00 4.61
5169 6263 3.375699 ACGGAGAATACAATCTGAGGGT 58.624 45.455 0.00 0.00 0.00 4.34
5170 6264 4.559704 GCTACGGAGAATACAATCTGAGGG 60.560 50.000 0.00 0.00 0.00 4.30
5171 6265 4.038042 TGCTACGGAGAATACAATCTGAGG 59.962 45.833 0.00 0.00 0.00 3.86
5172 6266 4.979197 GTGCTACGGAGAATACAATCTGAG 59.021 45.833 0.00 0.00 0.00 3.35
5173 6267 4.401202 TGTGCTACGGAGAATACAATCTGA 59.599 41.667 0.00 0.00 0.00 3.27
5174 6268 4.682787 TGTGCTACGGAGAATACAATCTG 58.317 43.478 0.00 0.00 0.00 2.90
5175 6269 5.292765 CATGTGCTACGGAGAATACAATCT 58.707 41.667 0.00 0.00 0.00 2.40
5176 6270 5.582439 CATGTGCTACGGAGAATACAATC 57.418 43.478 0.00 0.00 0.00 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.