Multiple sequence alignment - TraesCS2B01G598600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G598600 chr2B 100.000 3102 0 0 1 3102 781586503 781583402 0.000000e+00 5729.0
1 TraesCS2B01G598600 chr2B 92.488 213 15 1 2738 2949 33542710 33542922 1.400000e-78 303.0
2 TraesCS2B01G598600 chr2D 90.739 2192 99 34 583 2723 651693067 651695205 0.000000e+00 2828.0
3 TraesCS2B01G598600 chr2D 93.082 159 10 1 2942 3099 651695197 651695355 6.690000e-57 231.0
4 TraesCS2B01G598600 chr2D 76.215 391 44 25 167 545 651692708 651693061 8.900000e-36 161.0
5 TraesCS2B01G598600 chr2A 88.078 2399 131 63 398 2723 775982475 775980159 0.000000e+00 2702.0
6 TraesCS2B01G598600 chr2A 93.301 209 14 0 2739 2947 757536913 757537121 3.000000e-80 309.0
7 TraesCS2B01G598600 chr2A 91.189 227 13 5 1 225 775982806 775982585 5.030000e-78 302.0
8 TraesCS2B01G598600 chr4A 93.897 213 12 1 2738 2949 733355688 733355900 1.390000e-83 320.0
9 TraesCS2B01G598600 chr6B 81.250 416 50 8 1371 1783 440982774 440983164 8.350000e-81 311.0
10 TraesCS2B01G598600 chr6B 96.667 60 1 1 1807 1865 440983240 440983299 7.080000e-17 99.0
11 TraesCS2B01G598600 chr5B 93.365 211 11 2 2743 2950 686048203 686047993 3.000000e-80 309.0
12 TraesCS2B01G598600 chr5B 90.435 230 15 6 2737 2964 667824512 667824288 2.340000e-76 296.0
13 TraesCS2B01G598600 chr6D 92.925 212 13 2 2739 2948 348080831 348080620 1.080000e-79 307.0
14 TraesCS2B01G598600 chr1D 92.857 210 14 1 2739 2947 18864767 18864558 1.400000e-78 303.0
15 TraesCS2B01G598600 chr3A 80.918 414 52 8 1371 1783 499570118 499570505 5.030000e-78 302.0
16 TraesCS2B01G598600 chr3A 96.667 60 1 1 1807 1865 499570581 499570640 7.080000e-17 99.0
17 TraesCS2B01G598600 chr1B 90.171 234 19 4 2730 2960 638831716 638831484 5.030000e-78 302.0
18 TraesCS2B01G598600 chr3D 91.705 217 14 4 2739 2952 587550438 587550223 6.500000e-77 298.0
19 TraesCS2B01G598600 chr6A 97.872 47 0 1 1820 1865 17310319 17310273 2.560000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G598600 chr2B 781583402 781586503 3101 True 5729.000000 5729 100.000000 1 3102 1 chr2B.!!$R1 3101
1 TraesCS2B01G598600 chr2D 651692708 651695355 2647 False 1073.333333 2828 86.678667 167 3099 3 chr2D.!!$F1 2932
2 TraesCS2B01G598600 chr2A 775980159 775982806 2647 True 1502.000000 2702 89.633500 1 2723 2 chr2A.!!$R1 2722
3 TraesCS2B01G598600 chr6B 440982774 440983299 525 False 205.000000 311 88.958500 1371 1865 2 chr6B.!!$F1 494
4 TraesCS2B01G598600 chr3A 499570118 499570640 522 False 200.500000 302 88.792500 1371 1865 2 chr3A.!!$F1 494

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
160 161 0.744874 TAGAGATCGACTTTGGCGGG 59.255 55.0 0.0 0.0 0.00 6.13 F
1750 1802 0.035056 AGCATGGCAAGTACCAGACC 60.035 55.0 0.0 0.0 44.71 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2047 2165 0.250513 CCTCCTCCTCGTTTTCCTGG 59.749 60.0 0.0 0.0 0.0 4.45 R
2886 3031 0.105039 CTCCCACTTCATCCTACGGC 59.895 60.0 0.0 0.0 0.0 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.479306 GTTGGTGAGAGCAAGTATAGAACA 58.521 41.667 0.00 0.00 36.14 3.18
55 56 5.163343 ACCGCACAAGATACACATACCTATT 60.163 40.000 0.00 0.00 0.00 1.73
56 57 5.405571 CCGCACAAGATACACATACCTATTC 59.594 44.000 0.00 0.00 0.00 1.75
57 58 5.117135 CGCACAAGATACACATACCTATTCG 59.883 44.000 0.00 0.00 0.00 3.34
58 59 6.213677 GCACAAGATACACATACCTATTCGA 58.786 40.000 0.00 0.00 0.00 3.71
59 60 6.868864 GCACAAGATACACATACCTATTCGAT 59.131 38.462 0.00 0.00 0.00 3.59
97 98 2.766925 AAGCTGTGTTGCCTCCCCA 61.767 57.895 0.00 0.00 0.00 4.96
114 115 4.033709 TCCCCAAAGTTTCATTGACCAAA 58.966 39.130 0.00 0.00 0.00 3.28
130 131 5.254339 GACCAAATGTCATGAAAGATCCC 57.746 43.478 0.00 0.00 43.85 3.85
154 155 3.870633 AAAGCGGTAGAGATCGACTTT 57.129 42.857 0.00 0.00 33.56 2.66
160 161 0.744874 TAGAGATCGACTTTGGCGGG 59.255 55.000 0.00 0.00 0.00 6.13
197 199 1.681486 GCTCTGCTCCTACCAGGACC 61.681 65.000 0.00 0.00 40.06 4.46
199 201 1.682684 CTGCTCCTACCAGGACCGT 60.683 63.158 0.00 0.00 40.06 4.83
203 205 1.753141 GCTCCTACCAGGACCGTATCA 60.753 57.143 0.00 0.00 40.06 2.15
206 208 1.000955 CCTACCAGGACCGTATCATGC 59.999 57.143 0.00 0.00 37.81 4.06
220 222 2.602257 TCATGCTATCTCACGGTTGG 57.398 50.000 0.00 0.00 0.00 3.77
225 227 2.301870 TGCTATCTCACGGTTGGTTTCT 59.698 45.455 0.00 0.00 0.00 2.52
232 234 4.828939 TCTCACGGTTGGTTTCTACTCTAA 59.171 41.667 0.00 0.00 0.00 2.10
269 271 1.000060 CGTGGTGTTCCTCGGAGTAAA 60.000 52.381 4.02 0.00 44.01 2.01
278 280 2.146920 CTCGGAGTAAAGAGGGGTCT 57.853 55.000 0.00 0.00 0.00 3.85
279 281 2.458620 CTCGGAGTAAAGAGGGGTCTT 58.541 52.381 0.00 0.00 0.00 3.01
280 282 2.427812 CTCGGAGTAAAGAGGGGTCTTC 59.572 54.545 0.00 0.00 0.00 2.87
281 283 2.042706 TCGGAGTAAAGAGGGGTCTTCT 59.957 50.000 0.00 0.00 0.00 2.85
282 284 3.267812 TCGGAGTAAAGAGGGGTCTTCTA 59.732 47.826 0.00 0.00 0.00 2.10
283 285 3.380954 CGGAGTAAAGAGGGGTCTTCTAC 59.619 52.174 0.00 0.00 0.00 2.59
284 286 4.351127 GGAGTAAAGAGGGGTCTTCTACA 58.649 47.826 0.00 0.00 0.00 2.74
285 287 4.160065 GGAGTAAAGAGGGGTCTTCTACAC 59.840 50.000 0.00 0.00 0.00 2.90
286 288 5.013258 AGTAAAGAGGGGTCTTCTACACT 57.987 43.478 0.00 0.00 0.00 3.55
287 289 5.018149 AGTAAAGAGGGGTCTTCTACACTC 58.982 45.833 0.00 0.00 35.17 3.51
288 290 3.837399 AAGAGGGGTCTTCTACACTCT 57.163 47.619 0.00 0.00 42.44 3.24
291 293 3.335484 AGAGGGGTCTTCTACACTCTTCT 59.665 47.826 0.00 0.00 39.54 2.85
299 301 7.415877 GGGTCTTCTACACTCTTCTTCTATGTC 60.416 44.444 0.00 0.00 0.00 3.06
306 308 6.844254 ACACTCTTCTTCTATGTCGTCTTAC 58.156 40.000 0.00 0.00 0.00 2.34
309 311 7.808381 CACTCTTCTTCTATGTCGTCTTACAAA 59.192 37.037 0.00 0.00 32.02 2.83
310 312 8.524487 ACTCTTCTTCTATGTCGTCTTACAAAT 58.476 33.333 0.00 0.00 32.02 2.32
312 314 7.759886 TCTTCTTCTATGTCGTCTTACAAATGG 59.240 37.037 0.00 0.00 32.02 3.16
313 315 5.810587 TCTTCTATGTCGTCTTACAAATGGC 59.189 40.000 0.00 0.00 32.02 4.40
316 318 5.935206 TCTATGTCGTCTTACAAATGGCAAA 59.065 36.000 0.00 0.00 32.02 3.68
317 319 4.217754 TGTCGTCTTACAAATGGCAAAC 57.782 40.909 0.00 0.00 0.00 2.93
318 320 3.223157 GTCGTCTTACAAATGGCAAACG 58.777 45.455 0.00 0.00 0.00 3.60
319 321 1.976045 CGTCTTACAAATGGCAAACGC 59.024 47.619 0.00 0.00 0.00 4.84
345 347 9.977762 CCAAACGGTAGTACTATTGTTTTATTC 57.022 33.333 22.63 3.09 0.00 1.75
355 357 6.842163 ACTATTGTTTTATTCTCGCACCTTG 58.158 36.000 0.00 0.00 0.00 3.61
359 361 5.516090 TGTTTTATTCTCGCACCTTGAAAC 58.484 37.500 0.00 0.00 0.00 2.78
362 364 2.031258 TTCTCGCACCTTGAAACACA 57.969 45.000 0.00 0.00 0.00 3.72
366 368 1.013596 CGCACCTTGAAACACACTGA 58.986 50.000 0.00 0.00 0.00 3.41
367 369 1.268032 CGCACCTTGAAACACACTGAC 60.268 52.381 0.00 0.00 0.00 3.51
368 370 2.017049 GCACCTTGAAACACACTGACT 58.983 47.619 0.00 0.00 0.00 3.41
369 371 2.423538 GCACCTTGAAACACACTGACTT 59.576 45.455 0.00 0.00 0.00 3.01
371 373 3.689161 CACCTTGAAACACACTGACTTCA 59.311 43.478 0.00 0.00 0.00 3.02
373 375 4.764823 ACCTTGAAACACACTGACTTCAAA 59.235 37.500 0.00 0.00 34.74 2.69
374 376 5.095490 CCTTGAAACACACTGACTTCAAAC 58.905 41.667 0.00 0.00 34.74 2.93
376 378 5.041951 TGAAACACACTGACTTCAAACAC 57.958 39.130 0.00 0.00 0.00 3.32
377 379 3.740044 AACACACTGACTTCAAACACG 57.260 42.857 0.00 0.00 0.00 4.49
378 380 1.396996 ACACACTGACTTCAAACACGC 59.603 47.619 0.00 0.00 0.00 5.34
379 381 1.665679 CACACTGACTTCAAACACGCT 59.334 47.619 0.00 0.00 0.00 5.07
380 382 1.665679 ACACTGACTTCAAACACGCTG 59.334 47.619 0.00 0.00 0.00 5.18
381 383 1.933181 CACTGACTTCAAACACGCTGA 59.067 47.619 0.00 0.00 0.00 4.26
382 384 1.933853 ACTGACTTCAAACACGCTGAC 59.066 47.619 0.00 0.00 0.00 3.51
383 385 2.205074 CTGACTTCAAACACGCTGACT 58.795 47.619 0.00 0.00 0.00 3.41
385 387 2.351418 TGACTTCAAACACGCTGACTTG 59.649 45.455 0.00 0.00 0.00 3.16
386 388 2.351726 GACTTCAAACACGCTGACTTGT 59.648 45.455 0.00 0.00 0.00 3.16
387 389 3.527533 ACTTCAAACACGCTGACTTGTA 58.472 40.909 0.00 0.00 0.00 2.41
388 390 3.308866 ACTTCAAACACGCTGACTTGTAC 59.691 43.478 0.00 0.00 0.00 2.90
389 391 2.206750 TCAAACACGCTGACTTGTACC 58.793 47.619 0.00 0.00 0.00 3.34
390 392 2.159014 TCAAACACGCTGACTTGTACCT 60.159 45.455 0.00 0.00 0.00 3.08
391 393 1.865865 AACACGCTGACTTGTACCTG 58.134 50.000 0.00 0.00 0.00 4.00
393 395 1.958579 ACACGCTGACTTGTACCTGTA 59.041 47.619 0.00 0.00 0.00 2.74
394 396 2.363038 ACACGCTGACTTGTACCTGTAA 59.637 45.455 0.00 0.00 0.00 2.41
395 397 2.987149 CACGCTGACTTGTACCTGTAAG 59.013 50.000 0.00 0.00 0.00 2.34
396 398 2.889045 ACGCTGACTTGTACCTGTAAGA 59.111 45.455 4.44 0.00 34.07 2.10
401 412 5.196341 TGACTTGTACCTGTAAGACTGTG 57.804 43.478 0.00 0.00 34.07 3.66
408 419 4.706842 ACCTGTAAGACTGTGACCAATT 57.293 40.909 0.00 0.00 34.07 2.32
411 422 5.995897 ACCTGTAAGACTGTGACCAATTAAC 59.004 40.000 0.00 0.00 34.07 2.01
417 428 5.010282 AGACTGTGACCAATTAACCCAATC 58.990 41.667 0.00 0.00 0.00 2.67
521 532 1.002900 ACGGTTCAATGAGTTTGTGCG 60.003 47.619 0.00 0.00 36.65 5.34
554 565 8.785329 AGATGACAAGAAAATCTTAGTCTTCC 57.215 34.615 19.82 12.14 38.14 3.46
555 566 7.826744 AGATGACAAGAAAATCTTAGTCTTCCC 59.173 37.037 19.82 10.85 38.14 3.97
556 567 7.079451 TGACAAGAAAATCTTAGTCTTCCCT 57.921 36.000 16.31 0.00 33.78 4.20
557 568 7.162082 TGACAAGAAAATCTTAGTCTTCCCTC 58.838 38.462 16.31 0.00 33.78 4.30
558 569 7.079451 ACAAGAAAATCTTAGTCTTCCCTCA 57.921 36.000 0.00 0.00 33.78 3.86
559 570 7.518188 ACAAGAAAATCTTAGTCTTCCCTCAA 58.482 34.615 0.00 0.00 33.78 3.02
560 571 7.998964 ACAAGAAAATCTTAGTCTTCCCTCAAA 59.001 33.333 0.00 0.00 33.78 2.69
561 572 8.850156 CAAGAAAATCTTAGTCTTCCCTCAAAA 58.150 33.333 0.00 0.00 33.78 2.44
562 573 8.996651 AGAAAATCTTAGTCTTCCCTCAAAAA 57.003 30.769 0.00 0.00 0.00 1.94
630 644 9.722056 ACGTTATTAATCGAGAAATAACTACGT 57.278 29.630 26.50 21.79 42.44 3.57
662 676 2.008329 GTCGACCGAGTCATAGTCAGT 58.992 52.381 3.51 0.00 32.09 3.41
735 755 1.683365 GGTGCATGTTCCTGGCCAT 60.683 57.895 5.51 0.00 0.00 4.40
786 806 5.064579 CGCAACAAACCTTTCCATTTCTTTT 59.935 36.000 0.00 0.00 0.00 2.27
852 875 2.986479 CACCAAGCTGGCGAAAATTAAC 59.014 45.455 0.00 0.00 42.67 2.01
908 931 3.506455 CACTCCTCTATATACGGTGGTGG 59.494 52.174 0.00 0.00 0.00 4.61
909 932 3.090037 CTCCTCTATATACGGTGGTGGG 58.910 54.545 0.00 0.00 0.00 4.61
910 933 2.448194 TCCTCTATATACGGTGGTGGGT 59.552 50.000 0.00 0.00 0.00 4.51
916 939 1.128809 ATACGGTGGTGGGTTGGTGA 61.129 55.000 0.00 0.00 0.00 4.02
917 940 1.128809 TACGGTGGTGGGTTGGTGAT 61.129 55.000 0.00 0.00 0.00 3.06
960 987 5.044476 AGACCAAGAGAGAGATCCAAGACTA 60.044 44.000 0.00 0.00 0.00 2.59
1095 1123 1.831286 ATCGAACCTATCCGCCGGT 60.831 57.895 1.63 0.00 34.27 5.28
1097 1125 2.588034 GAACCTATCCGCCGGTGC 60.588 66.667 10.27 0.00 32.86 5.01
1136 1164 2.670479 CAGATCATCATCGGACCTTCG 58.330 52.381 0.00 0.00 33.75 3.79
1160 1197 3.119029 CCCTTTCTTGGTTGCATGTATGG 60.119 47.826 0.00 0.00 0.00 2.74
1190 1228 5.422331 TCTGCTGCTCCTGTTAATTAGTAGT 59.578 40.000 0.00 0.00 0.00 2.73
1191 1229 6.605995 TCTGCTGCTCCTGTTAATTAGTAGTA 59.394 38.462 0.00 0.00 0.00 1.82
1192 1230 6.806751 TGCTGCTCCTGTTAATTAGTAGTAG 58.193 40.000 0.00 0.00 0.00 2.57
1193 1231 6.380274 TGCTGCTCCTGTTAATTAGTAGTAGT 59.620 38.462 0.00 0.00 0.00 2.73
1194 1232 7.558807 TGCTGCTCCTGTTAATTAGTAGTAGTA 59.441 37.037 0.00 0.00 0.00 1.82
1195 1233 7.861872 GCTGCTCCTGTTAATTAGTAGTAGTAC 59.138 40.741 0.00 0.00 0.00 2.73
1196 1234 9.122779 CTGCTCCTGTTAATTAGTAGTAGTACT 57.877 37.037 14.57 14.57 42.49 2.73
1214 1252 9.893634 AGTAGTACTAGATAGCATACCTATGTG 57.106 37.037 1.87 0.00 36.88 3.21
1219 1257 2.839486 TAGCATACCTATGTGGCTGC 57.161 50.000 8.65 0.00 43.89 5.25
1328 1375 0.596083 GGATCTGCACCGATCGTCAG 60.596 60.000 15.09 16.70 40.52 3.51
1341 1388 3.865745 CGATCGTCAGAATTAAGCACCTT 59.134 43.478 7.03 0.00 0.00 3.50
1564 1613 6.199908 GTCCATAAGAAATCACTGTCATCTCG 59.800 42.308 0.00 0.00 0.00 4.04
1598 1647 0.038159 CACTCGTCCTGGTGGAACTC 60.038 60.000 0.00 0.00 45.18 3.01
1603 1652 1.202651 CGTCCTGGTGGAACTCACTTT 60.203 52.381 0.00 0.00 45.18 2.66
1645 1694 4.586815 CCTGAGTGGAACGAGACCTTCG 62.587 59.091 0.00 0.00 46.59 3.79
1750 1802 0.035056 AGCATGGCAAGTACCAGACC 60.035 55.000 0.00 0.00 44.71 3.85
1780 1872 2.025226 TCCTGTACTCTCGGATCCAAGT 60.025 50.000 13.41 13.79 0.00 3.16
1781 1873 2.099921 CCTGTACTCTCGGATCCAAGTG 59.900 54.545 13.41 6.37 0.00 3.16
1782 1874 1.476891 TGTACTCTCGGATCCAAGTGC 59.523 52.381 13.41 14.83 0.00 4.40
1783 1875 1.751924 GTACTCTCGGATCCAAGTGCT 59.248 52.381 13.41 0.00 0.00 4.40
1784 1876 2.145397 ACTCTCGGATCCAAGTGCTA 57.855 50.000 13.41 0.00 0.00 3.49
1785 1877 2.028130 ACTCTCGGATCCAAGTGCTAG 58.972 52.381 13.41 0.00 0.00 3.42
1786 1878 2.028130 CTCTCGGATCCAAGTGCTAGT 58.972 52.381 13.41 0.00 0.00 2.57
1788 1880 3.215151 TCTCGGATCCAAGTGCTAGTAG 58.785 50.000 13.41 0.00 0.00 2.57
1791 1883 3.881688 TCGGATCCAAGTGCTAGTAGTAC 59.118 47.826 13.41 10.16 0.00 2.73
1792 1884 3.004524 CGGATCCAAGTGCTAGTAGTACC 59.995 52.174 13.41 0.00 30.68 3.34
1793 1885 3.004524 GGATCCAAGTGCTAGTAGTACCG 59.995 52.174 14.05 6.61 30.68 4.02
1795 1887 4.220693 TCCAAGTGCTAGTAGTACCGTA 57.779 45.455 14.05 0.00 30.68 4.02
1796 1888 4.194640 TCCAAGTGCTAGTAGTACCGTAG 58.805 47.826 14.05 2.64 30.68 3.51
1797 1889 3.944015 CCAAGTGCTAGTAGTACCGTAGT 59.056 47.826 14.05 0.00 30.68 2.73
1798 1890 5.104941 TCCAAGTGCTAGTAGTACCGTAGTA 60.105 44.000 14.05 0.00 30.68 1.82
1999 2111 0.532115 CCCTACATGTTTGCCCTTGC 59.468 55.000 2.30 0.00 38.26 4.01
2031 2149 2.592861 GGCCGCCATGATCTGACC 60.593 66.667 3.91 0.00 0.00 4.02
2036 2154 1.723870 GCCATGATCTGACCGCAAC 59.276 57.895 0.00 0.00 0.00 4.17
2047 2165 0.729816 GACCGCAACTCTGTCGTCTC 60.730 60.000 0.00 0.00 0.00 3.36
2059 2177 1.000607 TGTCGTCTCCAGGAAAACGAG 60.001 52.381 21.56 0.00 43.94 4.18
2060 2178 0.601558 TCGTCTCCAGGAAAACGAGG 59.398 55.000 18.53 6.29 39.04 4.63
2061 2179 0.601558 CGTCTCCAGGAAAACGAGGA 59.398 55.000 15.94 0.00 37.31 3.71
2141 2262 3.865446 CAAGATGGTGCTGTATGTCTGA 58.135 45.455 0.00 0.00 0.00 3.27
2142 2263 3.533606 AGATGGTGCTGTATGTCTGAC 57.466 47.619 0.00 0.00 0.00 3.51
2143 2264 3.102972 AGATGGTGCTGTATGTCTGACT 58.897 45.455 9.51 0.00 0.00 3.41
2144 2265 2.749280 TGGTGCTGTATGTCTGACTG 57.251 50.000 9.51 0.00 0.00 3.51
2167 2288 7.284034 ACTGTCATAATGGATAGAAAGGCTTTG 59.716 37.037 18.79 0.00 31.28 2.77
2171 2292 8.668653 TCATAATGGATAGAAAGGCTTTGGATA 58.331 33.333 18.79 7.83 0.00 2.59
2209 2330 3.319122 ACAGACAGGGCATTCAGAAAAAC 59.681 43.478 0.00 0.00 0.00 2.43
2210 2331 2.554032 AGACAGGGCATTCAGAAAAACG 59.446 45.455 0.00 0.00 0.00 3.60
2211 2332 2.552315 GACAGGGCATTCAGAAAAACGA 59.448 45.455 0.00 0.00 0.00 3.85
2213 2334 2.554032 CAGGGCATTCAGAAAAACGAGT 59.446 45.455 0.00 0.00 0.00 4.18
2214 2335 3.751175 CAGGGCATTCAGAAAAACGAGTA 59.249 43.478 0.00 0.00 0.00 2.59
2215 2336 4.215399 CAGGGCATTCAGAAAAACGAGTAA 59.785 41.667 0.00 0.00 0.00 2.24
2217 2338 5.300792 AGGGCATTCAGAAAAACGAGTAAAA 59.699 36.000 0.00 0.00 0.00 1.52
2218 2339 5.980715 GGGCATTCAGAAAAACGAGTAAAAA 59.019 36.000 0.00 0.00 0.00 1.94
2252 2373 4.201950 GGGGAAATATGTATCGATGCATGC 60.202 45.833 31.52 19.73 34.85 4.06
2253 2374 4.395854 GGGAAATATGTATCGATGCATGCA 59.604 41.667 31.52 25.04 34.85 3.96
2254 2375 5.066893 GGGAAATATGTATCGATGCATGCAT 59.933 40.000 32.66 32.66 39.69 3.96
2255 2376 5.969435 GGAAATATGTATCGATGCATGCATG 59.031 40.000 36.73 26.06 36.70 4.06
2284 2405 0.447406 TCAAGCAATTCACCGCATCG 59.553 50.000 0.00 0.00 0.00 3.84
2292 2413 4.411327 CAATTCACCGCATCGTTTTGTAT 58.589 39.130 0.00 0.00 0.00 2.29
2317 2442 6.482835 TGCATATCAACAATACTTACGCAAC 58.517 36.000 0.00 0.00 0.00 4.17
2327 2468 5.697848 ATACTTACGCAACTCATTTCGAC 57.302 39.130 0.00 0.00 0.00 4.20
2361 2502 7.589395 TGTGTATTACATTCAGAAAAATGCGT 58.411 30.769 0.00 0.00 39.72 5.24
2362 2503 7.748683 TGTGTATTACATTCAGAAAAATGCGTC 59.251 33.333 0.00 0.00 39.72 5.19
2363 2504 7.748683 GTGTATTACATTCAGAAAAATGCGTCA 59.251 33.333 0.00 0.00 39.72 4.35
2364 2505 8.293157 TGTATTACATTCAGAAAAATGCGTCAA 58.707 29.630 0.00 0.00 39.72 3.18
2365 2506 9.123709 GTATTACATTCAGAAAAATGCGTCAAA 57.876 29.630 0.00 0.00 39.72 2.69
2366 2507 7.993821 TTACATTCAGAAAAATGCGTCAAAA 57.006 28.000 0.00 0.00 39.72 2.44
2367 2508 6.900568 ACATTCAGAAAAATGCGTCAAAAA 57.099 29.167 0.00 0.00 39.72 1.94
2368 2509 6.704819 ACATTCAGAAAAATGCGTCAAAAAC 58.295 32.000 0.00 0.00 39.72 2.43
2437 2579 4.260456 GCATCATTTTGCATGCATACCAAC 60.260 41.667 23.37 3.83 44.18 3.77
2460 2604 7.383102 ACACTGCTTAAGGAATTCATTGTAG 57.617 36.000 15.31 12.55 0.00 2.74
2461 2605 6.942576 ACACTGCTTAAGGAATTCATTGTAGT 59.057 34.615 15.31 10.98 0.00 2.73
2462 2606 8.100791 ACACTGCTTAAGGAATTCATTGTAGTA 58.899 33.333 15.31 10.45 0.00 1.82
2490 2634 2.271800 GTTCCACGTCAAGGCTAGATG 58.728 52.381 0.00 0.00 0.00 2.90
2531 2675 9.712359 AAAAGTTCACAACGAGAAAGTAATAAC 57.288 29.630 0.00 0.00 36.23 1.89
2532 2676 8.428186 AAGTTCACAACGAGAAAGTAATAACA 57.572 30.769 0.00 0.00 36.23 2.41
2553 2698 5.849510 ACAAAAAGGGGAATTTAACGGAAG 58.150 37.500 0.00 0.00 0.00 3.46
2574 2719 0.679960 GGGTTTGGCGCATTAGGAGT 60.680 55.000 10.83 0.00 0.00 3.85
2583 2728 1.931172 CGCATTAGGAGTAAACCCACG 59.069 52.381 0.00 0.00 0.00 4.94
2600 2745 2.649034 GGTCGAACTCCGCACTCA 59.351 61.111 0.00 0.00 38.37 3.41
2608 2753 0.037590 ACTCCGCACTCAGAGTCTCT 59.962 55.000 0.00 0.00 39.08 3.10
2618 2763 2.034878 TCAGAGTCTCTGGCGCATTAT 58.965 47.619 26.16 0.00 44.39 1.28
2638 2783 4.301027 GCATCCTAGTCCCCGCCG 62.301 72.222 0.00 0.00 0.00 6.46
2714 2859 4.254492 CGAGTATGGATGGAGTAGATCGA 58.746 47.826 0.00 0.00 0.00 3.59
2723 2868 1.611519 GAGTAGATCGAGGTCCTGGG 58.388 60.000 0.00 0.00 0.00 4.45
2724 2869 0.468400 AGTAGATCGAGGTCCTGGGC 60.468 60.000 0.00 0.00 0.00 5.36
2725 2870 0.468400 GTAGATCGAGGTCCTGGGCT 60.468 60.000 0.00 0.00 0.00 5.19
2726 2871 0.178987 TAGATCGAGGTCCTGGGCTC 60.179 60.000 0.00 0.00 0.00 4.70
2727 2872 2.444895 ATCGAGGTCCTGGGCTCC 60.445 66.667 0.00 0.00 0.00 4.70
2728 2873 2.937959 GATCGAGGTCCTGGGCTCCT 62.938 65.000 0.00 1.90 0.00 3.69
2729 2874 3.465403 CGAGGTCCTGGGCTCCTG 61.465 72.222 0.00 0.00 0.00 3.86
2730 2875 3.086600 GAGGTCCTGGGCTCCTGG 61.087 72.222 0.00 9.89 42.93 4.45
2736 2881 3.854669 CTGGGCTCCTGGCGGTAG 61.855 72.222 0.00 0.00 42.94 3.18
2741 2886 2.840102 CTCCTGGCGGTAGGGGAG 60.840 72.222 0.00 0.00 41.07 4.30
2742 2887 4.475444 TCCTGGCGGTAGGGGAGG 62.475 72.222 0.00 0.00 38.42 4.30
2743 2888 4.475444 CCTGGCGGTAGGGGAGGA 62.475 72.222 0.00 0.00 34.06 3.71
2744 2889 2.840102 CTGGCGGTAGGGGAGGAG 60.840 72.222 0.00 0.00 0.00 3.69
2745 2890 3.352748 TGGCGGTAGGGGAGGAGA 61.353 66.667 0.00 0.00 0.00 3.71
2746 2891 2.838693 GGCGGTAGGGGAGGAGAC 60.839 72.222 0.00 0.00 0.00 3.36
2748 2893 1.381463 GCGGTAGGGGAGGAGACTT 60.381 63.158 0.00 0.00 44.43 3.01
2749 2894 1.677637 GCGGTAGGGGAGGAGACTTG 61.678 65.000 0.00 0.00 44.43 3.16
2750 2895 1.677637 CGGTAGGGGAGGAGACTTGC 61.678 65.000 0.00 0.00 44.43 4.01
2751 2896 1.338890 GGTAGGGGAGGAGACTTGCC 61.339 65.000 0.00 0.00 44.43 4.52
2752 2897 0.325765 GTAGGGGAGGAGACTTGCCT 60.326 60.000 0.00 0.00 44.43 4.75
2753 2898 0.325671 TAGGGGAGGAGACTTGCCTG 60.326 60.000 0.00 0.00 44.43 4.85
2754 2899 2.270527 GGGAGGAGACTTGCCTGC 59.729 66.667 0.00 0.00 44.43 4.85
2755 2900 2.297129 GGGAGGAGACTTGCCTGCT 61.297 63.158 0.00 0.00 44.43 4.24
2756 2901 1.220477 GGAGGAGACTTGCCTGCTC 59.780 63.158 0.00 0.00 46.71 4.26
2757 2902 1.220477 GAGGAGACTTGCCTGCTCC 59.780 63.158 0.00 0.00 46.75 4.70
2758 2903 2.270527 GGAGACTTGCCTGCTCCC 59.729 66.667 0.00 0.00 41.84 4.30
2759 2904 2.270527 GAGACTTGCCTGCTCCCC 59.729 66.667 0.00 0.00 0.00 4.81
2760 2905 3.334054 AGACTTGCCTGCTCCCCC 61.334 66.667 0.00 0.00 0.00 5.40
2778 2923 3.879682 CGCATGTGCCCATCCGTG 61.880 66.667 0.00 0.00 37.91 4.94
2779 2924 4.197498 GCATGTGCCCATCCGTGC 62.197 66.667 0.00 0.00 36.54 5.34
2780 2925 2.438975 CATGTGCCCATCCGTGCT 60.439 61.111 0.00 0.00 0.00 4.40
2781 2926 2.124570 ATGTGCCCATCCGTGCTC 60.125 61.111 0.00 0.00 0.00 4.26
2782 2927 3.704231 ATGTGCCCATCCGTGCTCC 62.704 63.158 0.00 0.00 0.00 4.70
2786 2931 4.838152 CCCATCCGTGCTCCCGTG 62.838 72.222 0.00 0.00 0.00 4.94
2787 2932 4.082523 CCATCCGTGCTCCCGTGT 62.083 66.667 0.00 0.00 0.00 4.49
2788 2933 2.717044 CCATCCGTGCTCCCGTGTA 61.717 63.158 0.00 0.00 0.00 2.90
2789 2934 1.518572 CATCCGTGCTCCCGTGTAC 60.519 63.158 0.00 0.00 0.00 2.90
2790 2935 1.980232 ATCCGTGCTCCCGTGTACA 60.980 57.895 0.00 0.00 0.00 2.90
2791 2936 1.327690 ATCCGTGCTCCCGTGTACAT 61.328 55.000 0.00 0.00 0.00 2.29
2792 2937 1.809619 CCGTGCTCCCGTGTACATG 60.810 63.158 8.18 8.18 0.00 3.21
2793 2938 1.809619 CGTGCTCCCGTGTACATGG 60.810 63.158 24.94 24.94 37.23 3.66
2794 2939 2.106683 GTGCTCCCGTGTACATGGC 61.107 63.158 26.22 16.37 36.15 4.40
2795 2940 2.290287 TGCTCCCGTGTACATGGCT 61.290 57.895 26.22 0.00 36.15 4.75
2796 2941 1.078426 GCTCCCGTGTACATGGCTT 60.078 57.895 26.22 0.00 36.15 4.35
2797 2942 1.369091 GCTCCCGTGTACATGGCTTG 61.369 60.000 26.22 18.20 36.15 4.01
2798 2943 0.249120 CTCCCGTGTACATGGCTTGA 59.751 55.000 26.22 17.44 36.15 3.02
2799 2944 0.908910 TCCCGTGTACATGGCTTGAT 59.091 50.000 26.22 0.00 36.15 2.57
2800 2945 1.280710 TCCCGTGTACATGGCTTGATT 59.719 47.619 26.22 0.00 36.15 2.57
2801 2946 2.091541 CCCGTGTACATGGCTTGATTT 58.908 47.619 26.22 0.00 36.15 2.17
2802 2947 2.159393 CCCGTGTACATGGCTTGATTTG 60.159 50.000 26.22 8.27 36.15 2.32
2803 2948 2.746904 CCGTGTACATGGCTTGATTTGA 59.253 45.455 20.98 0.00 0.00 2.69
2804 2949 3.378112 CCGTGTACATGGCTTGATTTGAT 59.622 43.478 20.98 0.00 0.00 2.57
2805 2950 4.142403 CCGTGTACATGGCTTGATTTGATT 60.142 41.667 20.98 0.00 0.00 2.57
2806 2951 4.794762 CGTGTACATGGCTTGATTTGATTG 59.205 41.667 7.22 0.00 0.00 2.67
2807 2952 5.104374 GTGTACATGGCTTGATTTGATTGG 58.896 41.667 7.45 0.00 0.00 3.16
2808 2953 5.015515 TGTACATGGCTTGATTTGATTGGA 58.984 37.500 7.45 0.00 0.00 3.53
2809 2954 5.479724 TGTACATGGCTTGATTTGATTGGAA 59.520 36.000 7.45 0.00 0.00 3.53
2810 2955 4.824289 ACATGGCTTGATTTGATTGGAAC 58.176 39.130 7.45 0.00 0.00 3.62
2811 2956 4.283978 ACATGGCTTGATTTGATTGGAACA 59.716 37.500 7.45 0.00 0.00 3.18
2824 2969 1.551452 TGGAACAAAATAAGGCCCGG 58.449 50.000 0.00 0.00 31.92 5.73
2825 2970 0.174845 GGAACAAAATAAGGCCCGGC 59.825 55.000 0.00 0.00 0.00 6.13
2838 2983 3.663806 CCGGCCCCACCCCTTTAA 61.664 66.667 0.00 0.00 33.26 1.52
2839 2984 2.441505 CGGCCCCACCCCTTTAAA 59.558 61.111 0.00 0.00 33.26 1.52
2840 2985 1.228925 CGGCCCCACCCCTTTAAAA 60.229 57.895 0.00 0.00 33.26 1.52
2841 2986 0.616395 CGGCCCCACCCCTTTAAAAT 60.616 55.000 0.00 0.00 33.26 1.82
2842 2987 1.200519 GGCCCCACCCCTTTAAAATC 58.799 55.000 0.00 0.00 0.00 2.17
2843 2988 1.553651 GGCCCCACCCCTTTAAAATCA 60.554 52.381 0.00 0.00 0.00 2.57
2844 2989 1.831106 GCCCCACCCCTTTAAAATCAG 59.169 52.381 0.00 0.00 0.00 2.90
2845 2990 2.466846 CCCCACCCCTTTAAAATCAGG 58.533 52.381 0.00 0.00 0.00 3.86
2852 2997 4.542906 CCCTTTAAAATCAGGGGGAGAT 57.457 45.455 2.35 0.00 45.75 2.75
2853 2998 4.218312 CCCTTTAAAATCAGGGGGAGATG 58.782 47.826 2.35 0.00 45.75 2.90
2854 2999 4.079212 CCCTTTAAAATCAGGGGGAGATGA 60.079 45.833 2.35 0.00 45.75 2.92
2855 3000 5.400653 CCCTTTAAAATCAGGGGGAGATGAT 60.401 44.000 2.35 0.00 45.75 2.45
2856 3001 6.138967 CCTTTAAAATCAGGGGGAGATGATT 58.861 40.000 0.00 0.00 45.67 2.57
2857 3002 7.297614 CCTTTAAAATCAGGGGGAGATGATTA 58.702 38.462 1.20 0.00 43.56 1.75
2858 3003 7.449704 CCTTTAAAATCAGGGGGAGATGATTAG 59.550 40.741 1.20 0.00 43.56 1.73
2859 3004 7.705912 TTAAAATCAGGGGGAGATGATTAGA 57.294 36.000 1.20 0.00 43.56 2.10
2860 3005 6.793518 AAAATCAGGGGGAGATGATTAGAT 57.206 37.500 1.20 0.00 43.56 1.98
2861 3006 6.793518 AAATCAGGGGGAGATGATTAGATT 57.206 37.500 1.20 0.00 43.56 2.40
2862 3007 7.895144 AAATCAGGGGGAGATGATTAGATTA 57.105 36.000 1.20 0.00 43.56 1.75
2863 3008 7.895144 AATCAGGGGGAGATGATTAGATTAA 57.105 36.000 0.00 0.00 42.77 1.40
2864 3009 7.895144 ATCAGGGGGAGATGATTAGATTAAA 57.105 36.000 0.00 0.00 32.20 1.52
2865 3010 7.705912 TCAGGGGGAGATGATTAGATTAAAA 57.294 36.000 0.00 0.00 0.00 1.52
2866 3011 8.113114 TCAGGGGGAGATGATTAGATTAAAAA 57.887 34.615 0.00 0.00 0.00 1.94
2906 3051 3.669354 CGTAGGATGAAGTGGGAGC 57.331 57.895 0.00 0.00 0.00 4.70
2907 3052 0.824109 CGTAGGATGAAGTGGGAGCA 59.176 55.000 0.00 0.00 0.00 4.26
2908 3053 1.471676 CGTAGGATGAAGTGGGAGCAC 60.472 57.143 0.00 0.00 0.00 4.40
2909 3054 0.824109 TAGGATGAAGTGGGAGCACG 59.176 55.000 0.00 0.00 0.00 5.34
2910 3055 1.450312 GGATGAAGTGGGAGCACGG 60.450 63.158 0.00 0.00 0.00 4.94
2911 3056 1.596934 GATGAAGTGGGAGCACGGA 59.403 57.895 0.00 0.00 0.00 4.69
2912 3057 0.179000 GATGAAGTGGGAGCACGGAT 59.821 55.000 0.00 0.00 0.00 4.18
2913 3058 0.107508 ATGAAGTGGGAGCACGGATG 60.108 55.000 0.00 0.00 0.00 3.51
2914 3059 1.191489 TGAAGTGGGAGCACGGATGA 61.191 55.000 0.00 0.00 0.00 2.92
2915 3060 0.460987 GAAGTGGGAGCACGGATGAG 60.461 60.000 0.00 0.00 0.00 2.90
2916 3061 0.904865 AAGTGGGAGCACGGATGAGA 60.905 55.000 0.00 0.00 0.00 3.27
2917 3062 1.142748 GTGGGAGCACGGATGAGAG 59.857 63.158 0.00 0.00 0.00 3.20
2918 3063 2.107953 GGGAGCACGGATGAGAGC 59.892 66.667 0.00 0.00 0.00 4.09
2919 3064 2.725312 GGGAGCACGGATGAGAGCA 61.725 63.158 0.00 0.00 0.00 4.26
2920 3065 1.445095 GGAGCACGGATGAGAGCAT 59.555 57.895 0.00 0.00 37.47 3.79
2921 3066 0.879400 GGAGCACGGATGAGAGCATG 60.879 60.000 0.00 0.00 34.11 4.06
2922 3067 0.879400 GAGCACGGATGAGAGCATGG 60.879 60.000 0.00 0.00 34.11 3.66
2923 3068 1.890979 GCACGGATGAGAGCATGGG 60.891 63.158 0.00 0.00 34.11 4.00
2924 3069 1.227764 CACGGATGAGAGCATGGGG 60.228 63.158 0.00 0.00 34.11 4.96
2925 3070 1.383109 ACGGATGAGAGCATGGGGA 60.383 57.895 0.00 0.00 34.11 4.81
2926 3071 1.370437 CGGATGAGAGCATGGGGAG 59.630 63.158 0.00 0.00 34.11 4.30
2927 3072 1.759881 GGATGAGAGCATGGGGAGG 59.240 63.158 0.00 0.00 34.11 4.30
2928 3073 1.759881 GATGAGAGCATGGGGAGGG 59.240 63.158 0.00 0.00 34.11 4.30
2929 3074 0.765903 GATGAGAGCATGGGGAGGGA 60.766 60.000 0.00 0.00 34.11 4.20
2930 3075 0.767446 ATGAGAGCATGGGGAGGGAG 60.767 60.000 0.00 0.00 32.31 4.30
2931 3076 2.771762 AGAGCATGGGGAGGGAGC 60.772 66.667 0.00 0.00 0.00 4.70
2932 3077 3.092511 GAGCATGGGGAGGGAGCA 61.093 66.667 0.00 0.00 0.00 4.26
2933 3078 3.095163 AGCATGGGGAGGGAGCAG 61.095 66.667 0.00 0.00 0.00 4.24
2934 3079 4.201122 GCATGGGGAGGGAGCAGG 62.201 72.222 0.00 0.00 0.00 4.85
2935 3080 4.201122 CATGGGGAGGGAGCAGGC 62.201 72.222 0.00 0.00 0.00 4.85
2936 3081 4.765970 ATGGGGAGGGAGCAGGCA 62.766 66.667 0.00 0.00 0.00 4.75
2938 3083 4.120755 GGGGAGGGAGCAGGCAAG 62.121 72.222 0.00 0.00 0.00 4.01
2939 3084 4.811364 GGGAGGGAGCAGGCAAGC 62.811 72.222 0.00 0.00 0.00 4.01
2940 3085 4.811364 GGAGGGAGCAGGCAAGCC 62.811 72.222 2.02 2.02 34.23 4.35
2944 3089 4.496336 GGAGCAGGCAAGCCGGAT 62.496 66.667 15.46 8.74 41.95 4.18
2945 3090 2.899339 GAGCAGGCAAGCCGGATC 60.899 66.667 15.46 14.32 39.23 3.36
2946 3091 4.496336 AGCAGGCAAGCCGGATCC 62.496 66.667 15.46 0.00 41.95 3.36
2960 3105 3.804638 GATCCGGCGGTAGGAGGGA 62.805 68.421 27.32 3.55 41.66 4.20
2988 3133 3.018973 GTCGTGCACGGCTTCAAA 58.981 55.556 34.85 13.64 41.36 2.69
3041 3186 3.984186 CTGCGGGAGAAGGAGGGGA 62.984 68.421 0.00 0.00 0.00 4.81
3042 3187 2.687566 GCGGGAGAAGGAGGGGAA 60.688 66.667 0.00 0.00 0.00 3.97
3099 3244 9.897744 CATTTGAACAGCATAACTTCTAAAAGA 57.102 29.630 0.00 0.00 36.30 2.52
3100 3245 9.899226 ATTTGAACAGCATAACTTCTAAAAGAC 57.101 29.630 0.00 0.00 36.30 3.01
3101 3246 8.677148 TTGAACAGCATAACTTCTAAAAGACT 57.323 30.769 0.00 0.00 36.30 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 5.932303 TGGTTTGTTCTATACTTGCTCTCAC 59.068 40.000 0.00 0.00 0.00 3.51
8 9 5.932303 GTGGTTTGTTCTATACTTGCTCTCA 59.068 40.000 0.00 0.00 0.00 3.27
10 11 5.246307 GGTGGTTTGTTCTATACTTGCTCT 58.754 41.667 0.00 0.00 0.00 4.09
26 27 1.877443 GTGTATCTTGTGCGGTGGTTT 59.123 47.619 0.00 0.00 0.00 3.27
55 56 5.212934 GCTCTACAAACATCATACGATCGA 58.787 41.667 24.34 5.87 0.00 3.59
56 57 4.976116 TGCTCTACAAACATCATACGATCG 59.024 41.667 14.88 14.88 0.00 3.69
57 58 6.563010 GCTTGCTCTACAAACATCATACGATC 60.563 42.308 0.00 0.00 37.96 3.69
58 59 5.235186 GCTTGCTCTACAAACATCATACGAT 59.765 40.000 0.00 0.00 37.96 3.73
59 60 4.566759 GCTTGCTCTACAAACATCATACGA 59.433 41.667 0.00 0.00 37.96 3.43
154 155 2.912714 GGCTATAACACCCCGCCA 59.087 61.111 0.00 0.00 40.41 5.69
160 161 1.885850 CACGGCCGGCTATAACACC 60.886 63.158 31.76 5.59 0.00 4.16
197 199 3.560902 ACCGTGAGATAGCATGATACG 57.439 47.619 0.00 0.00 0.00 3.06
199 201 3.641436 ACCAACCGTGAGATAGCATGATA 59.359 43.478 0.00 0.00 0.00 2.15
203 205 3.055094 AGAAACCAACCGTGAGATAGCAT 60.055 43.478 0.00 0.00 0.00 3.79
206 208 5.125739 AGAGTAGAAACCAACCGTGAGATAG 59.874 44.000 0.00 0.00 0.00 2.08
220 222 9.623000 AGAATAGAGGAGTCTTAGAGTAGAAAC 57.377 37.037 0.00 0.00 33.84 2.78
225 227 6.225318 GCGAGAATAGAGGAGTCTTAGAGTA 58.775 44.000 0.00 0.00 31.01 2.59
232 234 1.944024 CACGCGAGAATAGAGGAGTCT 59.056 52.381 15.93 0.00 34.43 3.24
269 271 3.335484 AGAAGAGTGTAGAAGACCCCTCT 59.665 47.826 0.00 0.00 37.10 3.69
274 276 7.399245 ACATAGAAGAAGAGTGTAGAAGACC 57.601 40.000 0.00 0.00 0.00 3.85
276 278 6.879993 ACGACATAGAAGAAGAGTGTAGAAGA 59.120 38.462 0.00 0.00 0.00 2.87
277 279 7.065324 AGACGACATAGAAGAAGAGTGTAGAAG 59.935 40.741 0.00 0.00 0.00 2.85
278 280 6.879993 AGACGACATAGAAGAAGAGTGTAGAA 59.120 38.462 0.00 0.00 0.00 2.10
279 281 6.408035 AGACGACATAGAAGAAGAGTGTAGA 58.592 40.000 0.00 0.00 0.00 2.59
280 282 6.671614 AGACGACATAGAAGAAGAGTGTAG 57.328 41.667 0.00 0.00 0.00 2.74
281 283 7.605309 TGTAAGACGACATAGAAGAAGAGTGTA 59.395 37.037 0.00 0.00 0.00 2.90
282 284 5.968528 AAGACGACATAGAAGAAGAGTGT 57.031 39.130 0.00 0.00 0.00 3.55
283 285 6.843208 TGTAAGACGACATAGAAGAAGAGTG 58.157 40.000 0.00 0.00 0.00 3.51
284 286 7.450124 TTGTAAGACGACATAGAAGAAGAGT 57.550 36.000 0.00 0.00 0.00 3.24
285 287 8.802856 CATTTGTAAGACGACATAGAAGAAGAG 58.197 37.037 0.00 0.00 0.00 2.85
286 288 7.759886 CCATTTGTAAGACGACATAGAAGAAGA 59.240 37.037 0.00 0.00 0.00 2.87
287 289 7.464710 GCCATTTGTAAGACGACATAGAAGAAG 60.465 40.741 0.00 0.00 0.00 2.85
288 290 6.312918 GCCATTTGTAAGACGACATAGAAGAA 59.687 38.462 0.00 0.00 0.00 2.52
291 293 5.483811 TGCCATTTGTAAGACGACATAGAA 58.516 37.500 0.00 0.00 0.00 2.10
299 301 1.976045 GCGTTTGCCATTTGTAAGACG 59.024 47.619 0.00 0.00 33.98 4.18
312 314 0.867086 TACTACCGTTTGGCGTTTGC 59.133 50.000 0.00 0.00 39.70 3.68
313 315 2.137523 AGTACTACCGTTTGGCGTTTG 58.862 47.619 0.00 0.00 39.70 2.93
316 318 3.056607 ACAATAGTACTACCGTTTGGCGT 60.057 43.478 15.13 0.00 39.70 5.68
317 319 3.514645 ACAATAGTACTACCGTTTGGCG 58.485 45.455 15.13 0.00 39.70 5.69
318 320 5.868043 AAACAATAGTACTACCGTTTGGC 57.132 39.130 21.89 0.00 39.70 4.52
319 321 9.977762 GAATAAAACAATAGTACTACCGTTTGG 57.022 33.333 22.70 3.57 42.84 3.28
322 324 9.294030 CGAGAATAAAACAATAGTACTACCGTT 57.706 33.333 4.31 8.68 0.00 4.44
323 325 7.433425 GCGAGAATAAAACAATAGTACTACCGT 59.567 37.037 4.31 2.41 0.00 4.83
324 326 7.433131 TGCGAGAATAAAACAATAGTACTACCG 59.567 37.037 4.31 1.74 0.00 4.02
325 327 8.538039 GTGCGAGAATAAAACAATAGTACTACC 58.462 37.037 4.31 0.00 0.00 3.18
326 328 8.538039 GGTGCGAGAATAAAACAATAGTACTAC 58.462 37.037 4.31 0.00 0.00 2.73
327 329 8.472413 AGGTGCGAGAATAAAACAATAGTACTA 58.528 33.333 4.77 4.77 0.00 1.82
345 347 1.003545 CAGTGTGTTTCAAGGTGCGAG 60.004 52.381 0.00 0.00 0.00 5.03
347 349 1.013596 TCAGTGTGTTTCAAGGTGCG 58.986 50.000 0.00 0.00 0.00 5.34
355 357 4.088648 CGTGTTTGAAGTCAGTGTGTTTC 58.911 43.478 0.00 0.00 0.00 2.78
359 361 1.665679 AGCGTGTTTGAAGTCAGTGTG 59.334 47.619 0.00 0.00 0.00 3.82
362 364 1.933853 GTCAGCGTGTTTGAAGTCAGT 59.066 47.619 0.00 0.00 0.00 3.41
366 368 2.356135 ACAAGTCAGCGTGTTTGAAGT 58.644 42.857 1.97 0.00 33.69 3.01
367 369 3.303132 GGTACAAGTCAGCGTGTTTGAAG 60.303 47.826 0.00 0.00 38.27 3.02
368 370 2.610374 GGTACAAGTCAGCGTGTTTGAA 59.390 45.455 0.00 0.00 38.27 2.69
369 371 2.159014 AGGTACAAGTCAGCGTGTTTGA 60.159 45.455 0.00 0.00 38.27 2.69
371 373 2.210116 CAGGTACAAGTCAGCGTGTTT 58.790 47.619 0.00 0.00 38.27 2.83
373 375 0.750850 ACAGGTACAAGTCAGCGTGT 59.249 50.000 0.00 0.00 40.29 4.49
374 376 2.717580 TACAGGTACAAGTCAGCGTG 57.282 50.000 0.00 0.00 0.00 5.34
376 378 3.057456 AGTCTTACAGGTACAAGTCAGCG 60.057 47.826 0.00 0.00 0.00 5.18
377 379 4.238514 CAGTCTTACAGGTACAAGTCAGC 58.761 47.826 0.00 0.00 0.00 4.26
378 380 5.009710 TCACAGTCTTACAGGTACAAGTCAG 59.990 44.000 0.00 0.00 0.00 3.51
379 381 4.891168 TCACAGTCTTACAGGTACAAGTCA 59.109 41.667 0.00 0.00 0.00 3.41
380 382 5.221130 GTCACAGTCTTACAGGTACAAGTC 58.779 45.833 0.00 0.00 0.00 3.01
381 383 4.038883 GGTCACAGTCTTACAGGTACAAGT 59.961 45.833 0.00 0.00 0.00 3.16
382 384 4.038763 TGGTCACAGTCTTACAGGTACAAG 59.961 45.833 0.00 0.00 0.00 3.16
383 385 3.962063 TGGTCACAGTCTTACAGGTACAA 59.038 43.478 0.00 0.00 0.00 2.41
385 387 4.595762 TTGGTCACAGTCTTACAGGTAC 57.404 45.455 0.00 0.00 0.00 3.34
386 388 5.818678 AATTGGTCACAGTCTTACAGGTA 57.181 39.130 0.00 0.00 0.00 3.08
387 389 4.706842 AATTGGTCACAGTCTTACAGGT 57.293 40.909 0.00 0.00 0.00 4.00
388 390 5.411669 GGTTAATTGGTCACAGTCTTACAGG 59.588 44.000 0.00 0.00 0.00 4.00
389 391 5.411669 GGGTTAATTGGTCACAGTCTTACAG 59.588 44.000 0.00 0.00 0.00 2.74
390 392 5.163184 TGGGTTAATTGGTCACAGTCTTACA 60.163 40.000 0.00 0.00 0.00 2.41
391 393 5.310451 TGGGTTAATTGGTCACAGTCTTAC 58.690 41.667 0.00 0.00 0.00 2.34
393 395 4.447138 TGGGTTAATTGGTCACAGTCTT 57.553 40.909 0.00 0.00 0.00 3.01
394 396 4.447138 TTGGGTTAATTGGTCACAGTCT 57.553 40.909 0.00 0.00 0.00 3.24
395 397 4.764823 TGATTGGGTTAATTGGTCACAGTC 59.235 41.667 0.00 0.00 0.00 3.51
396 398 4.735369 TGATTGGGTTAATTGGTCACAGT 58.265 39.130 0.00 0.00 0.00 3.55
401 412 4.099419 GTGGGATGATTGGGTTAATTGGTC 59.901 45.833 0.00 0.00 0.00 4.02
408 419 5.221843 GCTACTATGTGGGATGATTGGGTTA 60.222 44.000 0.00 0.00 0.00 2.85
411 422 3.560025 GGCTACTATGTGGGATGATTGGG 60.560 52.174 0.00 0.00 0.00 4.12
417 428 0.320771 GCGGGCTACTATGTGGGATG 60.321 60.000 0.00 0.00 0.00 3.51
521 532 4.320608 TTTTCTTGTCATCTTTGCACCC 57.679 40.909 0.00 0.00 0.00 4.61
580 591 8.947115 CGTACTCATCCTCATGTATAGTCATAA 58.053 37.037 0.00 0.00 0.00 1.90
581 592 8.101419 ACGTACTCATCCTCATGTATAGTCATA 58.899 37.037 0.00 0.00 0.00 2.15
627 641 5.348986 TCGGTCGACTTAAGTATACTACGT 58.651 41.667 16.46 3.69 0.00 3.57
628 642 5.460419 ACTCGGTCGACTTAAGTATACTACG 59.540 44.000 16.46 6.94 0.00 3.51
629 643 6.477033 TGACTCGGTCGACTTAAGTATACTAC 59.523 42.308 16.46 0.00 34.95 2.73
630 644 6.573434 TGACTCGGTCGACTTAAGTATACTA 58.427 40.000 16.46 2.54 34.95 1.82
637 651 4.331992 TGACTATGACTCGGTCGACTTAAG 59.668 45.833 16.46 12.43 34.95 1.85
735 755 1.229177 TCTGACCACTGGCCTAGCA 60.229 57.895 3.32 0.00 0.00 3.49
786 806 4.941263 CAGTCCTCCGGTCATTATTGAAAA 59.059 41.667 0.00 0.00 32.48 2.29
804 827 1.141657 TGCATATTCTCTGGCCAGTCC 59.858 52.381 31.58 12.39 0.00 3.85
852 875 1.373570 GAAGCCTTCCACGGAATCTG 58.626 55.000 0.00 0.00 33.28 2.90
881 904 5.163642 CCACCGTATATAGAGGAGTGTATGC 60.164 48.000 10.31 0.00 0.00 3.14
908 931 0.521735 GTCGCCTTCAATCACCAACC 59.478 55.000 0.00 0.00 0.00 3.77
909 932 1.234821 TGTCGCCTTCAATCACCAAC 58.765 50.000 0.00 0.00 0.00 3.77
910 933 2.198827 ATGTCGCCTTCAATCACCAA 57.801 45.000 0.00 0.00 0.00 3.67
916 939 1.271871 TGGGTGAATGTCGCCTTCAAT 60.272 47.619 7.72 0.00 46.01 2.57
917 940 0.109532 TGGGTGAATGTCGCCTTCAA 59.890 50.000 7.72 0.00 46.01 2.69
1108 1136 2.608752 CCGATGATGATCTGCATGACGA 60.609 50.000 0.00 0.00 37.34 4.20
1136 1164 1.963515 ACATGCAACCAAGAAAGGGAC 59.036 47.619 0.00 0.00 0.00 4.46
1160 1197 0.536260 ACAGGAGCAGCAGAGATCAC 59.464 55.000 0.00 0.00 0.00 3.06
1190 1228 7.774157 GCCACATAGGTATGCTATCTAGTACTA 59.226 40.741 1.89 1.89 40.61 1.82
1191 1229 6.603997 GCCACATAGGTATGCTATCTAGTACT 59.396 42.308 0.00 0.00 40.61 2.73
1192 1230 6.603997 AGCCACATAGGTATGCTATCTAGTAC 59.396 42.308 2.26 0.00 40.61 2.73
1193 1231 6.603599 CAGCCACATAGGTATGCTATCTAGTA 59.396 42.308 3.74 0.00 40.61 1.82
1194 1232 5.420421 CAGCCACATAGGTATGCTATCTAGT 59.580 44.000 3.74 0.00 40.61 2.57
1195 1233 5.680922 GCAGCCACATAGGTATGCTATCTAG 60.681 48.000 3.74 0.00 44.20 2.43
1196 1234 4.160439 GCAGCCACATAGGTATGCTATCTA 59.840 45.833 3.74 0.00 44.20 1.98
1197 1235 3.055530 GCAGCCACATAGGTATGCTATCT 60.056 47.826 3.74 0.00 44.20 1.98
1198 1236 3.265791 GCAGCCACATAGGTATGCTATC 58.734 50.000 3.74 0.00 44.20 2.08
1214 1252 2.592623 GAATTAACCGCGGTGCAGCC 62.593 60.000 34.95 17.61 0.00 4.85
1219 1257 1.127951 GTGACTGAATTAACCGCGGTG 59.872 52.381 34.95 20.02 0.00 4.94
1564 1613 3.566523 ACGAGTGAATTTCTGACGAGAC 58.433 45.455 13.19 0.00 0.00 3.36
1598 1647 3.077359 CTCCCTGCTCCTGTAAAAAGTG 58.923 50.000 0.00 0.00 0.00 3.16
1603 1652 0.902984 TCGCTCCCTGCTCCTGTAAA 60.903 55.000 0.00 0.00 40.11 2.01
1683 1732 1.645034 CGTCGCTGTCCATGATCTTT 58.355 50.000 0.00 0.00 0.00 2.52
1750 1802 2.351835 CGAGAGTACAGGAGGTGTGTTG 60.352 54.545 0.00 0.00 40.69 3.33
1793 1885 2.094649 AGCTGAAACGGAGCAGTACTAC 60.095 50.000 0.00 0.00 39.05 2.73
1795 1887 0.969894 AGCTGAAACGGAGCAGTACT 59.030 50.000 0.00 0.00 39.05 2.73
1796 1888 1.071605 CAGCTGAAACGGAGCAGTAC 58.928 55.000 8.42 0.00 39.05 2.73
1797 1889 0.670546 GCAGCTGAAACGGAGCAGTA 60.671 55.000 20.43 0.00 39.05 2.74
1798 1890 1.963338 GCAGCTGAAACGGAGCAGT 60.963 57.895 20.43 0.00 39.05 4.40
1799 1891 1.670406 AGCAGCTGAAACGGAGCAG 60.670 57.895 20.43 0.00 39.05 4.24
1801 1893 2.684843 CCAGCAGCTGAAACGGAGC 61.685 63.158 24.90 0.00 36.65 4.70
1802 1894 0.886490 AACCAGCAGCTGAAACGGAG 60.886 55.000 24.90 7.50 32.44 4.63
1803 1895 0.884704 GAACCAGCAGCTGAAACGGA 60.885 55.000 24.90 0.00 32.44 4.69
2031 2149 0.730834 CTGGAGACGACAGAGTTGCG 60.731 60.000 0.00 0.00 38.20 4.85
2036 2154 2.678324 GTTTTCCTGGAGACGACAGAG 58.322 52.381 0.00 0.00 38.20 3.35
2047 2165 0.250513 CCTCCTCCTCGTTTTCCTGG 59.749 60.000 0.00 0.00 0.00 4.45
2059 2177 0.536460 CGTAGCTCTCCTCCTCCTCC 60.536 65.000 0.00 0.00 0.00 4.30
2060 2178 0.536460 CCGTAGCTCTCCTCCTCCTC 60.536 65.000 0.00 0.00 0.00 3.71
2061 2179 1.534697 CCGTAGCTCTCCTCCTCCT 59.465 63.158 0.00 0.00 0.00 3.69
2109 2227 2.470362 CCATCTTGCTGGCTCGCTG 61.470 63.158 1.45 0.00 0.00 5.18
2141 2262 6.506538 AGCCTTTCTATCCATTATGACAGT 57.493 37.500 0.00 0.00 0.00 3.55
2142 2263 7.255381 CCAAAGCCTTTCTATCCATTATGACAG 60.255 40.741 0.00 0.00 0.00 3.51
2143 2264 6.547141 CCAAAGCCTTTCTATCCATTATGACA 59.453 38.462 0.00 0.00 0.00 3.58
2144 2265 6.772716 TCCAAAGCCTTTCTATCCATTATGAC 59.227 38.462 0.00 0.00 0.00 3.06
2167 2288 4.769688 TGTCACACACATCAAGGATATCC 58.230 43.478 14.41 14.41 0.00 2.59
2171 2292 3.071457 TGTCTGTCACACACATCAAGGAT 59.929 43.478 0.00 0.00 33.23 3.24
2222 2343 9.391006 GCATCGATACATATTTCCCCTATTTTA 57.609 33.333 0.00 0.00 0.00 1.52
2252 2373 7.912250 GGTGAATTGCTTGATTAGTACTTCATG 59.088 37.037 0.00 3.44 39.22 3.07
2253 2374 7.201644 CGGTGAATTGCTTGATTAGTACTTCAT 60.202 37.037 0.00 0.00 39.22 2.57
2254 2375 6.092122 CGGTGAATTGCTTGATTAGTACTTCA 59.908 38.462 0.00 0.00 36.36 3.02
2255 2376 6.478588 CGGTGAATTGCTTGATTAGTACTTC 58.521 40.000 0.00 0.00 31.62 3.01
2292 2413 6.670077 TGCGTAAGTATTGTTGATATGCAA 57.330 33.333 0.00 0.00 36.03 4.08
2317 2442 3.620374 CACATCAAGGAGGTCGAAATGAG 59.380 47.826 0.00 0.00 0.00 2.90
2361 2502 5.903198 ATTCCCCCATTTTGAGTTTTTGA 57.097 34.783 0.00 0.00 0.00 2.69
2362 2503 7.665145 ACATAATTCCCCCATTTTGAGTTTTTG 59.335 33.333 0.00 0.00 0.00 2.44
2363 2504 7.754624 ACATAATTCCCCCATTTTGAGTTTTT 58.245 30.769 0.00 0.00 0.00 1.94
2364 2505 7.328404 ACATAATTCCCCCATTTTGAGTTTT 57.672 32.000 0.00 0.00 0.00 2.43
2365 2506 6.950860 ACATAATTCCCCCATTTTGAGTTT 57.049 33.333 0.00 0.00 0.00 2.66
2366 2507 7.014230 CGATACATAATTCCCCCATTTTGAGTT 59.986 37.037 0.00 0.00 0.00 3.01
2367 2508 6.490040 CGATACATAATTCCCCCATTTTGAGT 59.510 38.462 0.00 0.00 0.00 3.41
2368 2509 6.714810 TCGATACATAATTCCCCCATTTTGAG 59.285 38.462 0.00 0.00 0.00 3.02
2404 2545 4.593597 GCAAAATGATGCAGTGAATTGG 57.406 40.909 0.00 0.00 45.70 3.16
2433 2575 5.649782 ATGAATTCCTTAAGCAGTGTTGG 57.350 39.130 2.27 0.00 0.00 3.77
2437 2579 7.383102 ACTACAATGAATTCCTTAAGCAGTG 57.617 36.000 2.27 1.65 0.00 3.66
2460 2604 4.533222 CTTGACGTGGAACAAAATGGTAC 58.467 43.478 0.00 0.00 44.16 3.34
2461 2605 3.566322 CCTTGACGTGGAACAAAATGGTA 59.434 43.478 0.00 0.00 44.16 3.25
2462 2606 2.360801 CCTTGACGTGGAACAAAATGGT 59.639 45.455 0.00 0.00 44.16 3.55
2511 2655 9.710979 CTTTTTGTTATTACTTTCTCGTTGTGA 57.289 29.630 0.00 0.00 0.00 3.58
2531 2675 5.694458 CACTTCCGTTAAATTCCCCTTTTTG 59.306 40.000 0.00 0.00 0.00 2.44
2532 2676 5.221561 CCACTTCCGTTAAATTCCCCTTTTT 60.222 40.000 0.00 0.00 0.00 1.94
2553 2698 0.963355 TCCTAATGCGCCAAACCCAC 60.963 55.000 4.18 0.00 0.00 4.61
2574 2719 0.318120 GGAGTTCGACCGTGGGTTTA 59.682 55.000 0.00 0.00 35.25 2.01
2583 2728 1.444553 CTGAGTGCGGAGTTCGACC 60.445 63.158 0.00 0.00 42.43 4.79
2600 2745 2.034878 TCATAATGCGCCAGAGACTCT 58.965 47.619 4.18 0.00 0.00 3.24
2608 2753 0.109153 AGGATGCTCATAATGCGCCA 59.891 50.000 4.18 0.00 32.37 5.69
2618 2763 2.134287 GCGGGGACTAGGATGCTCA 61.134 63.158 0.00 0.00 0.00 4.26
2724 2869 2.840102 CTCCCCTACCGCCAGGAG 60.840 72.222 0.00 0.00 41.02 3.69
2725 2870 4.475444 CCTCCCCTACCGCCAGGA 62.475 72.222 0.00 0.00 41.02 3.86
2726 2871 4.475444 TCCTCCCCTACCGCCAGG 62.475 72.222 0.00 0.00 45.13 4.45
2727 2872 2.840102 CTCCTCCCCTACCGCCAG 60.840 72.222 0.00 0.00 0.00 4.85
2728 2873 3.352748 TCTCCTCCCCTACCGCCA 61.353 66.667 0.00 0.00 0.00 5.69
2729 2874 2.838693 GTCTCCTCCCCTACCGCC 60.839 72.222 0.00 0.00 0.00 6.13
2730 2875 1.381463 AAGTCTCCTCCCCTACCGC 60.381 63.158 0.00 0.00 0.00 5.68
2731 2876 1.677637 GCAAGTCTCCTCCCCTACCG 61.678 65.000 0.00 0.00 0.00 4.02
2732 2877 1.338890 GGCAAGTCTCCTCCCCTACC 61.339 65.000 0.00 0.00 0.00 3.18
2733 2878 0.325765 AGGCAAGTCTCCTCCCCTAC 60.326 60.000 0.00 0.00 0.00 3.18
2734 2879 0.325671 CAGGCAAGTCTCCTCCCCTA 60.326 60.000 0.00 0.00 0.00 3.53
2735 2880 1.614824 CAGGCAAGTCTCCTCCCCT 60.615 63.158 0.00 0.00 0.00 4.79
2736 2881 2.993853 CAGGCAAGTCTCCTCCCC 59.006 66.667 0.00 0.00 0.00 4.81
2737 2882 2.250741 GAGCAGGCAAGTCTCCTCCC 62.251 65.000 0.00 0.00 0.00 4.30
2738 2883 1.220477 GAGCAGGCAAGTCTCCTCC 59.780 63.158 0.00 0.00 0.00 4.30
2739 2884 1.220477 GGAGCAGGCAAGTCTCCTC 59.780 63.158 0.00 0.00 42.31 3.71
2740 2885 2.297129 GGGAGCAGGCAAGTCTCCT 61.297 63.158 11.56 0.00 44.39 3.69
2741 2886 2.270527 GGGAGCAGGCAAGTCTCC 59.729 66.667 0.00 0.00 44.28 3.71
2742 2887 2.270527 GGGGAGCAGGCAAGTCTC 59.729 66.667 0.00 0.00 0.00 3.36
2743 2888 3.334054 GGGGGAGCAGGCAAGTCT 61.334 66.667 0.00 0.00 0.00 3.24
2762 2907 4.197498 GCACGGATGGGCACATGC 62.197 66.667 5.94 8.82 41.50 4.06
2763 2908 2.438975 AGCACGGATGGGCACATG 60.439 61.111 5.94 0.00 37.47 3.21
2764 2909 2.124570 GAGCACGGATGGGCACAT 60.125 61.111 0.00 0.00 40.85 3.21
2765 2910 4.408821 GGAGCACGGATGGGCACA 62.409 66.667 0.00 0.00 0.00 4.57
2769 2914 4.838152 CACGGGAGCACGGATGGG 62.838 72.222 0.00 0.00 38.39 4.00
2770 2915 2.717044 TACACGGGAGCACGGATGG 61.717 63.158 0.00 0.00 38.39 3.51
2771 2916 1.518572 GTACACGGGAGCACGGATG 60.519 63.158 0.00 0.00 38.39 3.51
2772 2917 1.327690 ATGTACACGGGAGCACGGAT 61.328 55.000 0.00 0.00 38.39 4.18
2773 2918 1.980232 ATGTACACGGGAGCACGGA 60.980 57.895 0.00 0.00 38.39 4.69
2774 2919 1.809619 CATGTACACGGGAGCACGG 60.810 63.158 0.00 0.00 38.39 4.94
2775 2920 1.809619 CCATGTACACGGGAGCACG 60.810 63.158 9.32 0.00 40.31 5.34
2776 2921 2.106683 GCCATGTACACGGGAGCAC 61.107 63.158 17.38 0.00 0.00 4.40
2777 2922 1.836999 AAGCCATGTACACGGGAGCA 61.837 55.000 17.38 0.00 0.00 4.26
2778 2923 1.078426 AAGCCATGTACACGGGAGC 60.078 57.895 17.38 7.72 0.00 4.70
2779 2924 0.249120 TCAAGCCATGTACACGGGAG 59.751 55.000 17.38 7.72 0.00 4.30
2780 2925 0.908910 ATCAAGCCATGTACACGGGA 59.091 50.000 17.38 3.97 0.00 5.14
2781 2926 1.750193 AATCAAGCCATGTACACGGG 58.250 50.000 10.48 10.43 0.00 5.28
2782 2927 2.746904 TCAAATCAAGCCATGTACACGG 59.253 45.455 2.89 2.89 0.00 4.94
2783 2928 4.621068 ATCAAATCAAGCCATGTACACG 57.379 40.909 0.00 0.00 0.00 4.49
2784 2929 5.104374 CCAATCAAATCAAGCCATGTACAC 58.896 41.667 0.00 0.00 0.00 2.90
2785 2930 5.015515 TCCAATCAAATCAAGCCATGTACA 58.984 37.500 0.00 0.00 0.00 2.90
2786 2931 5.581126 TCCAATCAAATCAAGCCATGTAC 57.419 39.130 0.00 0.00 0.00 2.90
2787 2932 5.479724 TGTTCCAATCAAATCAAGCCATGTA 59.520 36.000 0.00 0.00 0.00 2.29
2788 2933 4.283978 TGTTCCAATCAAATCAAGCCATGT 59.716 37.500 0.00 0.00 0.00 3.21
2789 2934 4.823157 TGTTCCAATCAAATCAAGCCATG 58.177 39.130 0.00 0.00 0.00 3.66
2790 2935 5.486735 TTGTTCCAATCAAATCAAGCCAT 57.513 34.783 0.00 0.00 0.00 4.40
2791 2936 4.952071 TTGTTCCAATCAAATCAAGCCA 57.048 36.364 0.00 0.00 0.00 4.75
2792 2937 6.806388 ATTTTGTTCCAATCAAATCAAGCC 57.194 33.333 0.00 0.00 35.25 4.35
2793 2938 8.445493 CCTTATTTTGTTCCAATCAAATCAAGC 58.555 33.333 0.00 0.00 35.25 4.01
2794 2939 8.445493 GCCTTATTTTGTTCCAATCAAATCAAG 58.555 33.333 0.00 0.00 35.25 3.02
2795 2940 7.390162 GGCCTTATTTTGTTCCAATCAAATCAA 59.610 33.333 0.00 0.00 35.25 2.57
2796 2941 6.878389 GGCCTTATTTTGTTCCAATCAAATCA 59.122 34.615 0.00 0.00 35.25 2.57
2797 2942 6.316140 GGGCCTTATTTTGTTCCAATCAAATC 59.684 38.462 0.84 0.00 35.25 2.17
2798 2943 6.179756 GGGCCTTATTTTGTTCCAATCAAAT 58.820 36.000 0.84 0.00 35.25 2.32
2799 2944 5.555966 GGGCCTTATTTTGTTCCAATCAAA 58.444 37.500 0.84 0.00 33.76 2.69
2800 2945 4.322349 CGGGCCTTATTTTGTTCCAATCAA 60.322 41.667 0.84 0.00 0.00 2.57
2801 2946 3.194542 CGGGCCTTATTTTGTTCCAATCA 59.805 43.478 0.84 0.00 0.00 2.57
2802 2947 3.430236 CCGGGCCTTATTTTGTTCCAATC 60.430 47.826 0.84 0.00 0.00 2.67
2803 2948 2.499693 CCGGGCCTTATTTTGTTCCAAT 59.500 45.455 0.84 0.00 0.00 3.16
2804 2949 1.896465 CCGGGCCTTATTTTGTTCCAA 59.104 47.619 0.84 0.00 0.00 3.53
2805 2950 1.551452 CCGGGCCTTATTTTGTTCCA 58.449 50.000 0.84 0.00 0.00 3.53
2806 2951 0.174845 GCCGGGCCTTATTTTGTTCC 59.825 55.000 8.12 0.00 0.00 3.62
2807 2952 0.174845 GGCCGGGCCTTATTTTGTTC 59.825 55.000 30.86 0.00 46.69 3.18
2808 2953 2.282827 GGCCGGGCCTTATTTTGTT 58.717 52.632 30.86 0.00 46.69 2.83
2809 2954 4.027884 GGCCGGGCCTTATTTTGT 57.972 55.556 30.86 0.00 46.69 2.83
2821 2966 2.733475 TTTTAAAGGGGTGGGGCCGG 62.733 60.000 0.00 0.00 38.44 6.13
2822 2967 0.616395 ATTTTAAAGGGGTGGGGCCG 60.616 55.000 0.00 0.00 38.44 6.13
2823 2968 1.200519 GATTTTAAAGGGGTGGGGCC 58.799 55.000 0.00 0.00 0.00 5.80
2824 2969 1.831106 CTGATTTTAAAGGGGTGGGGC 59.169 52.381 0.00 0.00 0.00 5.80
2825 2970 2.466846 CCTGATTTTAAAGGGGTGGGG 58.533 52.381 0.00 0.00 0.00 4.96
2832 2977 5.129368 TCATCTCCCCCTGATTTTAAAGG 57.871 43.478 0.00 0.00 0.00 3.11
2833 2978 8.220559 TCTAATCATCTCCCCCTGATTTTAAAG 58.779 37.037 3.40 0.00 41.22 1.85
2834 2979 8.113114 TCTAATCATCTCCCCCTGATTTTAAA 57.887 34.615 3.40 0.00 41.22 1.52
2835 2980 7.705912 TCTAATCATCTCCCCCTGATTTTAA 57.294 36.000 3.40 0.00 41.22 1.52
2836 2981 7.895144 ATCTAATCATCTCCCCCTGATTTTA 57.105 36.000 3.40 0.00 41.22 1.52
2837 2982 6.793518 ATCTAATCATCTCCCCCTGATTTT 57.206 37.500 3.40 0.00 41.22 1.82
2838 2983 6.793518 AATCTAATCATCTCCCCCTGATTT 57.206 37.500 3.40 0.00 41.22 2.17
2839 2984 7.895144 TTAATCTAATCATCTCCCCCTGATT 57.105 36.000 3.57 3.57 42.92 2.57
2840 2985 7.895144 TTTAATCTAATCATCTCCCCCTGAT 57.105 36.000 0.00 0.00 33.59 2.90
2841 2986 7.705912 TTTTAATCTAATCATCTCCCCCTGA 57.294 36.000 0.00 0.00 0.00 3.86
2877 3022 3.695830 TCATCCTACGGCTGTCTTTTT 57.304 42.857 0.00 0.00 0.00 1.94
2878 3023 3.008049 ACTTCATCCTACGGCTGTCTTTT 59.992 43.478 0.00 0.00 0.00 2.27
2879 3024 2.567615 ACTTCATCCTACGGCTGTCTTT 59.432 45.455 0.00 0.00 0.00 2.52
2880 3025 2.093973 CACTTCATCCTACGGCTGTCTT 60.094 50.000 0.00 0.00 0.00 3.01
2881 3026 1.478510 CACTTCATCCTACGGCTGTCT 59.521 52.381 0.00 0.00 0.00 3.41
2882 3027 1.471676 CCACTTCATCCTACGGCTGTC 60.472 57.143 0.00 0.00 0.00 3.51
2883 3028 0.537188 CCACTTCATCCTACGGCTGT 59.463 55.000 2.42 2.42 0.00 4.40
2884 3029 0.179073 CCCACTTCATCCTACGGCTG 60.179 60.000 0.00 0.00 0.00 4.85
2885 3030 0.325296 TCCCACTTCATCCTACGGCT 60.325 55.000 0.00 0.00 0.00 5.52
2886 3031 0.105039 CTCCCACTTCATCCTACGGC 59.895 60.000 0.00 0.00 0.00 5.68
2887 3032 0.105039 GCTCCCACTTCATCCTACGG 59.895 60.000 0.00 0.00 0.00 4.02
2888 3033 0.824109 TGCTCCCACTTCATCCTACG 59.176 55.000 0.00 0.00 0.00 3.51
2889 3034 1.471676 CGTGCTCCCACTTCATCCTAC 60.472 57.143 0.00 0.00 39.86 3.18
2890 3035 0.824109 CGTGCTCCCACTTCATCCTA 59.176 55.000 0.00 0.00 39.86 2.94
2891 3036 1.599047 CGTGCTCCCACTTCATCCT 59.401 57.895 0.00 0.00 39.86 3.24
2892 3037 1.450312 CCGTGCTCCCACTTCATCC 60.450 63.158 0.00 0.00 39.86 3.51
2893 3038 0.179000 ATCCGTGCTCCCACTTCATC 59.821 55.000 0.00 0.00 39.86 2.92
2894 3039 0.107508 CATCCGTGCTCCCACTTCAT 60.108 55.000 0.00 0.00 39.86 2.57
2895 3040 1.191489 TCATCCGTGCTCCCACTTCA 61.191 55.000 0.00 0.00 39.86 3.02
2896 3041 0.460987 CTCATCCGTGCTCCCACTTC 60.461 60.000 0.00 0.00 39.86 3.01
2897 3042 0.904865 TCTCATCCGTGCTCCCACTT 60.905 55.000 0.00 0.00 39.86 3.16
2898 3043 1.305297 TCTCATCCGTGCTCCCACT 60.305 57.895 0.00 0.00 39.86 4.00
2899 3044 1.142748 CTCTCATCCGTGCTCCCAC 59.857 63.158 0.00 0.00 38.62 4.61
2900 3045 2.725312 GCTCTCATCCGTGCTCCCA 61.725 63.158 0.00 0.00 0.00 4.37
2901 3046 2.037620 ATGCTCTCATCCGTGCTCCC 62.038 60.000 0.00 0.00 0.00 4.30
2902 3047 0.879400 CATGCTCTCATCCGTGCTCC 60.879 60.000 0.00 0.00 0.00 4.70
2903 3048 0.879400 CCATGCTCTCATCCGTGCTC 60.879 60.000 0.00 0.00 0.00 4.26
2904 3049 1.145598 CCATGCTCTCATCCGTGCT 59.854 57.895 0.00 0.00 0.00 4.40
2905 3050 1.890979 CCCATGCTCTCATCCGTGC 60.891 63.158 0.00 0.00 0.00 5.34
2906 3051 1.227764 CCCCATGCTCTCATCCGTG 60.228 63.158 0.00 0.00 0.00 4.94
2907 3052 1.383109 TCCCCATGCTCTCATCCGT 60.383 57.895 0.00 0.00 0.00 4.69
2908 3053 1.370437 CTCCCCATGCTCTCATCCG 59.630 63.158 0.00 0.00 0.00 4.18
2909 3054 1.759881 CCTCCCCATGCTCTCATCC 59.240 63.158 0.00 0.00 0.00 3.51
2910 3055 0.765903 TCCCTCCCCATGCTCTCATC 60.766 60.000 0.00 0.00 0.00 2.92
2911 3056 0.767446 CTCCCTCCCCATGCTCTCAT 60.767 60.000 0.00 0.00 0.00 2.90
2912 3057 1.383664 CTCCCTCCCCATGCTCTCA 60.384 63.158 0.00 0.00 0.00 3.27
2913 3058 2.817056 GCTCCCTCCCCATGCTCTC 61.817 68.421 0.00 0.00 0.00 3.20
2914 3059 2.771762 GCTCCCTCCCCATGCTCT 60.772 66.667 0.00 0.00 0.00 4.09
2915 3060 3.092511 TGCTCCCTCCCCATGCTC 61.093 66.667 0.00 0.00 0.00 4.26
2916 3061 3.095163 CTGCTCCCTCCCCATGCT 61.095 66.667 0.00 0.00 0.00 3.79
2917 3062 4.201122 CCTGCTCCCTCCCCATGC 62.201 72.222 0.00 0.00 0.00 4.06
2918 3063 4.201122 GCCTGCTCCCTCCCCATG 62.201 72.222 0.00 0.00 0.00 3.66
2919 3064 4.765970 TGCCTGCTCCCTCCCCAT 62.766 66.667 0.00 0.00 0.00 4.00
2921 3066 4.120755 CTTGCCTGCTCCCTCCCC 62.121 72.222 0.00 0.00 0.00 4.81
2922 3067 4.811364 GCTTGCCTGCTCCCTCCC 62.811 72.222 0.00 0.00 0.00 4.30
2923 3068 4.811364 GGCTTGCCTGCTCCCTCC 62.811 72.222 4.11 0.00 0.00 4.30
2927 3072 4.496336 ATCCGGCTTGCCTGCTCC 62.496 66.667 10.12 0.00 0.00 4.70
2928 3073 2.899339 GATCCGGCTTGCCTGCTC 60.899 66.667 10.12 0.76 0.00 4.26
2929 3074 4.496336 GGATCCGGCTTGCCTGCT 62.496 66.667 10.12 0.00 0.00 4.24
2940 3085 3.671411 CTCCTACCGCCGGATCCG 61.671 72.222 27.65 27.65 39.44 4.18
2941 3086 3.303928 CCTCCTACCGCCGGATCC 61.304 72.222 11.71 0.00 0.00 3.36
2942 3087 3.303928 CCCTCCTACCGCCGGATC 61.304 72.222 11.71 0.00 0.00 3.36
2943 3088 3.161853 ATCCCTCCTACCGCCGGAT 62.162 63.158 11.71 0.00 0.00 4.18
2944 3089 3.804638 GATCCCTCCTACCGCCGGA 62.805 68.421 11.71 0.00 0.00 5.14
2945 3090 3.303928 GATCCCTCCTACCGCCGG 61.304 72.222 0.00 0.00 0.00 6.13
2946 3091 3.671411 CGATCCCTCCTACCGCCG 61.671 72.222 0.00 0.00 0.00 6.46
2947 3092 2.203451 TCGATCCCTCCTACCGCC 60.203 66.667 0.00 0.00 0.00 6.13
2948 3093 2.562876 GGTCGATCCCTCCTACCGC 61.563 68.421 0.00 0.00 0.00 5.68
2969 3114 1.092921 TTTGAAGCCGTGCACGACTT 61.093 50.000 35.76 35.76 44.42 3.01
2973 3118 2.175184 CTCCTTTGAAGCCGTGCACG 62.175 60.000 31.77 31.77 39.44 5.34
3006 3151 2.833582 GGCCACCTCTCCGATCGA 60.834 66.667 18.66 1.60 0.00 3.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.