Multiple sequence alignment - TraesCS2B01G598400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G598400 chr2B 100.000 5864 0 0 1 5864 781540860 781534997 0.000000e+00 10829.0
1 TraesCS2B01G598400 chr2B 82.823 914 126 23 731 1634 781582070 781581178 0.000000e+00 789.0
2 TraesCS2B01G598400 chr2B 83.458 804 106 19 3466 4255 781579950 781579160 0.000000e+00 723.0
3 TraesCS2B01G598400 chr2B 91.832 453 34 3 4404 4855 781579138 781578688 3.860000e-176 628.0
4 TraesCS2B01G598400 chr2B 82.540 315 42 10 1 312 781582611 781582307 1.250000e-66 265.0
5 TraesCS2B01G598400 chr2B 87.317 205 21 4 1959 2162 781580783 781580583 4.570000e-56 230.0
6 TraesCS2B01G598400 chr2A 92.868 1374 89 4 536 1908 775940075 775938710 0.000000e+00 1986.0
7 TraesCS2B01G598400 chr2A 88.647 872 66 11 3125 3978 775938152 775937296 0.000000e+00 1031.0
8 TraesCS2B01G598400 chr2A 80.933 1222 171 38 731 1924 775978139 775976952 0.000000e+00 909.0
9 TraesCS2B01G598400 chr2A 81.907 1028 135 33 3247 4245 775976368 775975363 0.000000e+00 821.0
10 TraesCS2B01G598400 chr2A 95.146 515 25 0 4359 4873 775936905 775936391 0.000000e+00 813.0
11 TraesCS2B01G598400 chr2A 91.068 571 31 10 1949 2517 775938702 775938150 0.000000e+00 754.0
12 TraesCS2B01G598400 chr2A 82.277 852 120 21 3411 4245 775942141 775941304 0.000000e+00 708.0
13 TraesCS2B01G598400 chr2A 94.865 370 17 2 4000 4368 775937304 775936936 1.420000e-160 577.0
14 TraesCS2B01G598400 chr2A 85.462 509 61 9 4357 4855 775975358 775974853 8.710000e-143 518.0
15 TraesCS2B01G598400 chr2A 84.231 520 63 9 4357 4873 775941299 775940796 6.830000e-134 488.0
16 TraesCS2B01G598400 chr2A 91.954 261 20 1 5043 5302 255972336 255972596 1.200000e-96 364.0
17 TraesCS2B01G598400 chr2A 90.458 262 24 1 5041 5301 255971034 255971295 1.560000e-90 344.0
18 TraesCS2B01G598400 chr2A 95.238 210 8 2 1 210 775940279 775940072 1.220000e-86 331.0
19 TraesCS2B01G598400 chr2A 86.829 205 22 4 1959 2162 775976947 775976747 2.130000e-54 224.0
20 TraesCS2B01G598400 chr2A 88.757 169 19 0 4876 5044 151612741 151612909 2.140000e-49 207.0
21 TraesCS2B01G598400 chr2A 89.091 165 9 5 5316 5477 775936381 775936223 4.640000e-46 196.0
22 TraesCS2B01G598400 chr2A 88.889 153 15 2 4885 5036 255970840 255970991 2.790000e-43 187.0
23 TraesCS2B01G598400 chr2A 77.326 344 36 15 5539 5864 775935845 775935526 1.310000e-36 165.0
24 TraesCS2B01G598400 chr2A 91.071 112 10 0 5175 5286 755105936 755105825 1.020000e-32 152.0
25 TraesCS2B01G598400 chr2A 94.000 50 3 0 5492 5541 775936173 775936124 6.300000e-10 76.8
26 TraesCS2B01G598400 chr2D 93.387 877 55 1 4000 4873 651724452 651725328 0.000000e+00 1295.0
27 TraesCS2B01G598400 chr2D 92.626 895 62 4 536 1428 651720827 651721719 0.000000e+00 1284.0
28 TraesCS2B01G598400 chr2D 90.588 935 58 12 3072 3978 651723528 651724460 0.000000e+00 1212.0
29 TraesCS2B01G598400 chr2D 81.506 1222 167 36 731 1924 651696650 651697840 0.000000e+00 950.0
30 TraesCS2B01G598400 chr2D 83.008 1024 127 32 3247 4245 651698426 651699427 0.000000e+00 883.0
31 TraesCS2B01G598400 chr2D 88.105 723 56 13 1489 2203 651722014 651722714 0.000000e+00 832.0
32 TraesCS2B01G598400 chr2D 88.447 528 50 7 2504 3026 651723010 651723531 1.390000e-175 627.0
33 TraesCS2B01G598400 chr2D 86.639 479 52 8 4357 4827 651699432 651699906 2.420000e-143 520.0
34 TraesCS2B01G598400 chr2D 80.432 695 99 25 3247 3918 651717607 651718287 4.080000e-136 496.0
35 TraesCS2B01G598400 chr2D 85.012 407 47 4 4467 4873 651719713 651720105 9.150000e-108 401.0
36 TraesCS2B01G598400 chr2D 95.238 210 7 3 1 210 651720624 651720830 4.380000e-86 329.0
37 TraesCS2B01G598400 chr2D 89.316 234 16 4 5304 5534 651725326 651725553 9.620000e-73 285.0
38 TraesCS2B01G598400 chr2D 83.388 307 40 7 2201 2502 651722784 651723084 2.080000e-69 274.0
39 TraesCS2B01G598400 chr2D 89.372 207 19 3 4040 4245 651719335 651719539 2.100000e-64 257.0
40 TraesCS2B01G598400 chr2D 90.341 176 16 1 1959 2133 651697845 651698020 4.570000e-56 230.0
41 TraesCS2B01G598400 chr5B 79.473 1632 253 55 653 2244 663229200 663227611 0.000000e+00 1083.0
42 TraesCS2B01G598400 chr5B 84.778 427 53 8 3535 3952 663227034 663226611 9.090000e-113 418.0
43 TraesCS2B01G598400 chr5B 82.963 135 22 1 2993 3126 663227228 663227094 2.870000e-23 121.0
44 TraesCS2B01G598400 chr5B 89.091 55 5 1 4292 4345 530038706 530038652 3.790000e-07 67.6
45 TraesCS2B01G598400 chr5A 79.066 1648 272 50 628 2244 654157780 654156175 0.000000e+00 1064.0
46 TraesCS2B01G598400 chr5A 81.022 822 129 18 730 1538 654169471 654168664 3.860000e-176 628.0
47 TraesCS2B01G598400 chr5A 84.519 478 59 10 3535 4004 654155547 654155077 5.360000e-125 459.0
48 TraesCS2B01G598400 chr5A 78.443 668 102 28 1532 2183 654168601 654167960 1.180000e-106 398.0
49 TraesCS2B01G598400 chr5A 82.143 448 68 9 4388 4827 654166583 654166140 2.000000e-99 374.0
50 TraesCS2B01G598400 chr5D 79.293 1613 246 54 653 2216 527157180 527155607 0.000000e+00 1048.0
51 TraesCS2B01G598400 chr5D 83.171 719 97 18 3535 4238 527155001 527154292 2.300000e-178 636.0
52 TraesCS2B01G598400 chr4D 92.453 265 17 3 5041 5303 509442556 509442293 5.550000e-100 375.0
53 TraesCS2B01G598400 chr4D 93.750 160 10 0 4885 5044 509442750 509442591 2.110000e-59 241.0
54 TraesCS2B01G598400 chr1D 92.899 169 12 0 4876 5044 23971192 23971360 4.540000e-61 246.0
55 TraesCS2B01G598400 chr1D 91.124 169 15 0 4876 5044 23970166 23970334 4.570000e-56 230.0
56 TraesCS2B01G598400 chr1D 91.667 108 5 4 5041 5145 260956966 260956860 4.740000e-31 147.0
57 TraesCS2B01G598400 chr1D 89.908 109 11 0 5041 5149 312331244 312331136 2.200000e-29 141.0
58 TraesCS2B01G598400 chr4A 84.211 247 39 0 5618 5864 322406659 322406413 2.110000e-59 241.0
59 TraesCS2B01G598400 chr4A 89.634 164 15 1 5130 5291 605419994 605420157 2.140000e-49 207.0
60 TraesCS2B01G598400 chr3A 87.500 208 22 3 5087 5291 735218872 735219078 2.730000e-58 237.0
61 TraesCS2B01G598400 chr3A 78.673 211 34 9 2367 2570 724463795 724463589 4.770000e-26 130.0
62 TraesCS2B01G598400 chr3A 89.091 55 5 1 4292 4345 451201846 451201900 3.790000e-07 67.6
63 TraesCS2B01G598400 chr3B 90.533 169 16 0 4876 5044 456905148 456905316 2.130000e-54 224.0
64 TraesCS2B01G598400 chr3B 79.365 189 32 6 2388 2571 795549437 795549251 6.170000e-25 126.0
65 TraesCS2B01G598400 chr7A 89.773 176 14 4 5130 5303 682989575 682989748 7.650000e-54 222.0
66 TraesCS2B01G598400 chr7A 92.857 112 8 0 5175 5286 40717655 40717544 4.700000e-36 163.0
67 TraesCS2B01G598400 chr7D 88.372 129 12 2 5179 5304 621072415 621072287 1.020000e-32 152.0
68 TraesCS2B01G598400 chr7D 90.769 65 4 2 5082 5146 621072593 621072531 1.050000e-12 86.1
69 TraesCS2B01G598400 chr7B 83.000 100 14 3 4876 4973 93647203 93647105 2.910000e-13 87.9
70 TraesCS2B01G598400 chr6A 87.692 65 6 2 5082 5146 1116683 1116745 2.270000e-09 75.0
71 TraesCS2B01G598400 chr6A 87.692 65 6 2 5082 5146 1117829 1117891 2.270000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G598400 chr2B 781534997 781540860 5863 True 10829.000000 10829 100.000000 1 5864 1 chr2B.!!$R1 5863
1 TraesCS2B01G598400 chr2B 781578688 781582611 3923 True 527.000000 789 85.594000 1 4855 5 chr2B.!!$R2 4854
2 TraesCS2B01G598400 chr2A 775935526 775942141 6615 True 647.800000 1986 89.523364 1 5864 11 chr2A.!!$R2 5863
3 TraesCS2B01G598400 chr2A 775974853 775978139 3286 True 618.000000 909 83.782750 731 4855 4 chr2A.!!$R3 4124
4 TraesCS2B01G598400 chr2A 255970840 255972596 1756 False 298.333333 364 90.433667 4885 5302 3 chr2A.!!$F2 417
5 TraesCS2B01G598400 chr2D 651717607 651725553 7946 False 662.909091 1295 88.719182 1 5534 11 chr2D.!!$F2 5533
6 TraesCS2B01G598400 chr2D 651696650 651699906 3256 False 645.750000 950 85.373500 731 4827 4 chr2D.!!$F1 4096
7 TraesCS2B01G598400 chr5B 663226611 663229200 2589 True 540.666667 1083 82.404667 653 3952 3 chr5B.!!$R2 3299
8 TraesCS2B01G598400 chr5A 654155077 654157780 2703 True 761.500000 1064 81.792500 628 4004 2 chr5A.!!$R1 3376
9 TraesCS2B01G598400 chr5A 654166140 654169471 3331 True 466.666667 628 80.536000 730 4827 3 chr5A.!!$R2 4097
10 TraesCS2B01G598400 chr5D 527154292 527157180 2888 True 842.000000 1048 81.232000 653 4238 2 chr5D.!!$R1 3585
11 TraesCS2B01G598400 chr1D 23970166 23971360 1194 False 238.000000 246 92.011500 4876 5044 2 chr1D.!!$F1 168

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
247 3271 0.460987 GCATCCGAGTCACCTTGAGG 60.461 60.0 0.00 0.00 42.17 3.86 F
1014 4088 0.035630 GAGTCATGGGCAACAGAGCT 60.036 55.0 0.00 0.00 39.74 4.09 F
2461 6200 0.462375 TTGCCAGCCATGCATGATTC 59.538 50.0 28.31 15.55 38.76 2.52 F
4004 7860 0.167908 GTGTGTGTGTGTGTGTGTGG 59.832 55.0 0.00 0.00 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1725 5222 1.415672 TTCCCCCACAAAGACGAGCT 61.416 55.0 0.00 0.00 0.00 4.09 R
2526 6265 0.031994 AACAAACCATGCTTGTCCGC 59.968 50.0 10.73 0.00 35.98 5.54 R
4272 8149 0.519519 TTAATGCAACGCGGGAACTG 59.480 50.0 12.47 0.18 38.10 3.16 R
5398 10836 0.179089 AAGCTGCTATGGCTGACTCG 60.179 55.0 12.17 0.00 40.19 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 3056 3.313526 ACCGTTCATAGAGATGCATTTGC 59.686 43.478 0.00 0.00 42.50 3.68
124 3148 4.339247 GCATTTGTATCCTGCAACCACTAT 59.661 41.667 0.00 0.00 35.96 2.12
184 3208 4.247267 ACAATTGCAAATGACTCACTGG 57.753 40.909 21.10 0.00 0.00 4.00
214 3238 4.951254 TCACCGAGTGACATTTTTGTAGA 58.049 39.130 3.02 0.00 37.67 2.59
247 3271 0.460987 GCATCCGAGTCACCTTGAGG 60.461 60.000 0.00 0.00 42.17 3.86
263 3287 5.130350 CCTTGAGGTTGAAAGTTGGAACTA 58.870 41.667 0.00 0.00 38.57 2.24
269 3293 7.340743 TGAGGTTGAAAGTTGGAACTATTGAAA 59.659 33.333 0.00 0.00 38.57 2.69
270 3294 8.250143 AGGTTGAAAGTTGGAACTATTGAAAT 57.750 30.769 0.00 0.00 38.57 2.17
271 3295 8.143835 AGGTTGAAAGTTGGAACTATTGAAATG 58.856 33.333 0.00 0.00 38.57 2.32
274 3298 9.528018 TTGAAAGTTGGAACTATTGAAATGTTC 57.472 29.630 5.49 5.49 38.57 3.18
276 3300 9.750125 GAAAGTTGGAACTATTGAAATGTTCTT 57.250 29.630 11.42 1.48 38.57 2.52
324 3348 9.830975 ATTTTAATTTTGAACTAAGCAACTGGT 57.169 25.926 0.00 0.00 0.00 4.00
325 3349 8.641499 TTTAATTTTGAACTAAGCAACTGGTG 57.359 30.769 0.00 0.00 0.00 4.17
326 3350 5.852282 ATTTTGAACTAAGCAACTGGTGT 57.148 34.783 0.00 0.00 0.00 4.16
327 3351 6.952773 ATTTTGAACTAAGCAACTGGTGTA 57.047 33.333 0.00 0.00 0.00 2.90
328 3352 6.952773 TTTTGAACTAAGCAACTGGTGTAT 57.047 33.333 0.00 0.00 0.00 2.29
329 3353 5.940192 TTGAACTAAGCAACTGGTGTATG 57.060 39.130 0.00 0.00 0.00 2.39
330 3354 4.968259 TGAACTAAGCAACTGGTGTATGT 58.032 39.130 0.00 0.00 0.00 2.29
331 3355 6.104146 TGAACTAAGCAACTGGTGTATGTA 57.896 37.500 0.00 0.00 0.00 2.29
332 3356 6.163476 TGAACTAAGCAACTGGTGTATGTAG 58.837 40.000 0.00 0.00 0.00 2.74
333 3357 5.740290 ACTAAGCAACTGGTGTATGTAGT 57.260 39.130 0.00 0.00 0.00 2.73
334 3358 5.479306 ACTAAGCAACTGGTGTATGTAGTG 58.521 41.667 0.00 0.00 0.00 2.74
335 3359 3.334583 AGCAACTGGTGTATGTAGTGG 57.665 47.619 0.00 0.00 0.00 4.00
336 3360 2.903784 AGCAACTGGTGTATGTAGTGGA 59.096 45.455 0.00 0.00 0.00 4.02
337 3361 3.326588 AGCAACTGGTGTATGTAGTGGAA 59.673 43.478 0.00 0.00 0.00 3.53
338 3362 3.684788 GCAACTGGTGTATGTAGTGGAAG 59.315 47.826 0.00 0.00 0.00 3.46
339 3363 3.611766 ACTGGTGTATGTAGTGGAAGC 57.388 47.619 0.00 0.00 0.00 3.86
340 3364 2.903784 ACTGGTGTATGTAGTGGAAGCA 59.096 45.455 0.00 0.00 0.00 3.91
341 3365 3.055819 ACTGGTGTATGTAGTGGAAGCAG 60.056 47.826 0.00 0.00 38.69 4.24
342 3366 2.903784 TGGTGTATGTAGTGGAAGCAGT 59.096 45.455 0.00 0.00 0.00 4.40
343 3367 3.326588 TGGTGTATGTAGTGGAAGCAGTT 59.673 43.478 0.00 0.00 0.00 3.16
344 3368 4.202419 TGGTGTATGTAGTGGAAGCAGTTT 60.202 41.667 0.00 0.00 0.00 2.66
345 3369 4.392138 GGTGTATGTAGTGGAAGCAGTTTC 59.608 45.833 0.00 0.00 34.93 2.78
356 3380 4.574599 GAAGCAGTTTCCTTGAATGTGT 57.425 40.909 0.00 0.00 0.00 3.72
357 3381 4.936891 GAAGCAGTTTCCTTGAATGTGTT 58.063 39.130 0.00 0.00 0.00 3.32
358 3382 5.343307 AAGCAGTTTCCTTGAATGTGTTT 57.657 34.783 0.00 0.00 0.00 2.83
359 3383 4.936891 AGCAGTTTCCTTGAATGTGTTTC 58.063 39.130 0.00 0.00 34.72 2.78
360 3384 4.646492 AGCAGTTTCCTTGAATGTGTTTCT 59.354 37.500 0.00 0.00 35.23 2.52
361 3385 5.827797 AGCAGTTTCCTTGAATGTGTTTCTA 59.172 36.000 0.00 0.00 35.23 2.10
362 3386 6.321181 AGCAGTTTCCTTGAATGTGTTTCTAA 59.679 34.615 0.00 0.00 35.23 2.10
363 3387 6.417930 GCAGTTTCCTTGAATGTGTTTCTAAC 59.582 38.462 0.00 0.00 35.23 2.34
364 3388 7.479980 CAGTTTCCTTGAATGTGTTTCTAACA 58.520 34.615 0.00 0.00 39.52 2.41
365 3389 7.645340 CAGTTTCCTTGAATGTGTTTCTAACAG 59.355 37.037 0.00 0.00 43.10 3.16
366 3390 7.339466 AGTTTCCTTGAATGTGTTTCTAACAGT 59.661 33.333 0.00 0.00 43.10 3.55
367 3391 7.639113 TTCCTTGAATGTGTTTCTAACAGTT 57.361 32.000 0.00 0.00 43.10 3.16
368 3392 7.639113 TCCTTGAATGTGTTTCTAACAGTTT 57.361 32.000 0.00 0.00 43.10 2.66
369 3393 7.479980 TCCTTGAATGTGTTTCTAACAGTTTG 58.520 34.615 0.00 0.00 43.10 2.93
370 3394 7.338196 TCCTTGAATGTGTTTCTAACAGTTTGA 59.662 33.333 0.00 0.00 43.10 2.69
371 3395 7.973388 CCTTGAATGTGTTTCTAACAGTTTGAA 59.027 33.333 6.12 6.12 43.10 2.69
372 3396 9.352784 CTTGAATGTGTTTCTAACAGTTTGAAA 57.647 29.630 16.14 16.14 43.10 2.69
373 3397 9.868277 TTGAATGTGTTTCTAACAGTTTGAAAT 57.132 25.926 21.01 8.87 43.10 2.17
380 3404 9.296400 TGTTTCTAACAGTTTGAAATAAGTTGC 57.704 29.630 21.01 10.36 36.25 4.17
381 3405 8.752254 GTTTCTAACAGTTTGAAATAAGTTGCC 58.248 33.333 21.01 6.76 33.20 4.52
382 3406 7.817418 TCTAACAGTTTGAAATAAGTTGCCT 57.183 32.000 0.00 0.00 0.00 4.75
383 3407 7.871853 TCTAACAGTTTGAAATAAGTTGCCTC 58.128 34.615 0.00 0.00 0.00 4.70
384 3408 6.463995 AACAGTTTGAAATAAGTTGCCTCA 57.536 33.333 0.00 0.00 0.00 3.86
385 3409 6.076981 ACAGTTTGAAATAAGTTGCCTCAG 57.923 37.500 0.00 0.00 0.00 3.35
386 3410 5.594317 ACAGTTTGAAATAAGTTGCCTCAGT 59.406 36.000 0.00 0.00 0.00 3.41
387 3411 6.096846 ACAGTTTGAAATAAGTTGCCTCAGTT 59.903 34.615 0.00 0.00 0.00 3.16
388 3412 6.980397 CAGTTTGAAATAAGTTGCCTCAGTTT 59.020 34.615 0.00 0.00 0.00 2.66
389 3413 8.134895 CAGTTTGAAATAAGTTGCCTCAGTTTA 58.865 33.333 0.00 0.00 0.00 2.01
390 3414 8.352942 AGTTTGAAATAAGTTGCCTCAGTTTAG 58.647 33.333 0.00 0.00 0.00 1.85
391 3415 6.817765 TGAAATAAGTTGCCTCAGTTTAGG 57.182 37.500 0.00 0.00 39.87 2.69
392 3416 5.710099 TGAAATAAGTTGCCTCAGTTTAGGG 59.290 40.000 0.00 0.00 37.11 3.53
393 3417 4.929146 ATAAGTTGCCTCAGTTTAGGGT 57.071 40.909 0.00 0.00 37.11 4.34
394 3418 6.382919 AATAAGTTGCCTCAGTTTAGGGTA 57.617 37.500 0.00 0.00 37.11 3.69
395 3419 3.697619 AGTTGCCTCAGTTTAGGGTAC 57.302 47.619 0.00 0.00 37.11 3.34
396 3420 2.976882 AGTTGCCTCAGTTTAGGGTACA 59.023 45.455 0.00 0.00 37.11 2.90
397 3421 3.393278 AGTTGCCTCAGTTTAGGGTACAA 59.607 43.478 0.00 0.00 37.11 2.41
398 3422 4.042934 AGTTGCCTCAGTTTAGGGTACAAT 59.957 41.667 0.00 0.00 37.11 2.71
399 3423 4.650972 TGCCTCAGTTTAGGGTACAATT 57.349 40.909 0.00 0.00 37.11 2.32
400 3424 4.993028 TGCCTCAGTTTAGGGTACAATTT 58.007 39.130 0.00 0.00 37.11 1.82
401 3425 5.390387 TGCCTCAGTTTAGGGTACAATTTT 58.610 37.500 0.00 0.00 37.11 1.82
402 3426 5.836358 TGCCTCAGTTTAGGGTACAATTTTT 59.164 36.000 0.00 0.00 37.11 1.94
430 3454 9.457436 AACTTTTTATATGAGGTAAACGATGGT 57.543 29.630 0.00 0.00 0.00 3.55
431 3455 9.457436 ACTTTTTATATGAGGTAAACGATGGTT 57.543 29.630 0.00 0.00 38.22 3.67
432 3456 9.716507 CTTTTTATATGAGGTAAACGATGGTTG 57.283 33.333 0.00 0.00 36.25 3.77
433 3457 9.451002 TTTTTATATGAGGTAAACGATGGTTGA 57.549 29.630 0.00 0.00 36.25 3.18
434 3458 9.451002 TTTTATATGAGGTAAACGATGGTTGAA 57.549 29.630 0.00 0.00 36.25 2.69
435 3459 9.621629 TTTATATGAGGTAAACGATGGTTGAAT 57.378 29.630 0.00 0.00 36.25 2.57
436 3460 7.730364 ATATGAGGTAAACGATGGTTGAATC 57.270 36.000 0.00 0.00 36.25 2.52
437 3461 4.900684 TGAGGTAAACGATGGTTGAATCA 58.099 39.130 0.00 0.00 36.25 2.57
438 3462 5.496556 TGAGGTAAACGATGGTTGAATCAT 58.503 37.500 0.00 0.00 36.25 2.45
439 3463 6.645306 TGAGGTAAACGATGGTTGAATCATA 58.355 36.000 0.00 0.00 36.25 2.15
440 3464 6.761242 TGAGGTAAACGATGGTTGAATCATAG 59.239 38.462 0.00 0.00 36.25 2.23
441 3465 6.884832 AGGTAAACGATGGTTGAATCATAGA 58.115 36.000 5.54 0.00 36.25 1.98
442 3466 6.761714 AGGTAAACGATGGTTGAATCATAGAC 59.238 38.462 5.54 0.00 36.25 2.59
443 3467 6.537301 GGTAAACGATGGTTGAATCATAGACA 59.463 38.462 5.54 0.00 36.25 3.41
444 3468 6.668541 AAACGATGGTTGAATCATAGACAG 57.331 37.500 5.54 0.00 36.25 3.51
445 3469 5.344743 ACGATGGTTGAATCATAGACAGT 57.655 39.130 5.54 0.00 0.00 3.55
446 3470 5.734720 ACGATGGTTGAATCATAGACAGTT 58.265 37.500 5.54 0.00 0.00 3.16
447 3471 6.173339 ACGATGGTTGAATCATAGACAGTTT 58.827 36.000 5.54 0.00 0.00 2.66
448 3472 6.655003 ACGATGGTTGAATCATAGACAGTTTT 59.345 34.615 5.54 0.00 0.00 2.43
449 3473 7.174946 ACGATGGTTGAATCATAGACAGTTTTT 59.825 33.333 5.54 0.00 0.00 1.94
450 3474 8.664798 CGATGGTTGAATCATAGACAGTTTTTA 58.335 33.333 0.00 0.00 0.00 1.52
457 3481 9.624697 TGAATCATAGACAGTTTTTAATGTTGC 57.375 29.630 0.00 0.00 0.00 4.17
458 3482 8.986477 AATCATAGACAGTTTTTAATGTTGCC 57.014 30.769 0.00 0.00 0.00 4.52
459 3483 7.517614 TCATAGACAGTTTTTAATGTTGCCA 57.482 32.000 0.00 0.00 0.00 4.92
460 3484 7.946207 TCATAGACAGTTTTTAATGTTGCCAA 58.054 30.769 0.00 0.00 0.00 4.52
461 3485 8.417106 TCATAGACAGTTTTTAATGTTGCCAAA 58.583 29.630 0.00 0.00 0.00 3.28
462 3486 9.206870 CATAGACAGTTTTTAATGTTGCCAAAT 57.793 29.630 0.00 0.00 0.00 2.32
465 3489 9.206870 AGACAGTTTTTAATGTTGCCAAATATG 57.793 29.630 0.00 0.00 0.00 1.78
466 3490 8.900983 ACAGTTTTTAATGTTGCCAAATATGT 57.099 26.923 0.00 0.00 0.00 2.29
467 3491 9.988815 ACAGTTTTTAATGTTGCCAAATATGTA 57.011 25.926 0.00 0.00 0.00 2.29
503 3527 8.877864 TCATGTAATTTTTGATACCTTGACCT 57.122 30.769 0.00 0.00 0.00 3.85
504 3528 8.739039 TCATGTAATTTTTGATACCTTGACCTG 58.261 33.333 0.00 0.00 0.00 4.00
505 3529 6.919721 TGTAATTTTTGATACCTTGACCTGC 58.080 36.000 0.00 0.00 0.00 4.85
530 3554 5.625150 AGTGAAGCACTTTGAAGTTCCTAT 58.375 37.500 0.00 0.00 42.59 2.57
534 3558 5.966742 AGCACTTTGAAGTTCCTATTTCC 57.033 39.130 0.00 0.00 37.08 3.13
596 3620 2.606308 GCCAGTGCACATGACTTTTCAG 60.606 50.000 21.04 0.94 34.23 3.02
599 3623 4.440525 CCAGTGCACATGACTTTTCAGTTT 60.441 41.667 21.04 0.00 34.35 2.66
603 3627 4.337836 TGCACATGACTTTTCAGTTTAGCA 59.662 37.500 0.00 0.00 34.35 3.49
677 3738 2.671396 GCACCTTGTTACTGATACACCG 59.329 50.000 0.00 0.00 0.00 4.94
686 3747 9.577110 CTTGTTACTGATACACCGAATTAGTTA 57.423 33.333 0.00 0.00 0.00 2.24
898 3969 6.998074 TCTGAACAAACCTTATGACAGTGAAT 59.002 34.615 0.00 0.00 32.43 2.57
1014 4088 0.035630 GAGTCATGGGCAACAGAGCT 60.036 55.000 0.00 0.00 39.74 4.09
1035 4109 6.418101 AGCTCCTTATGCTGTTTCATTTCTA 58.582 36.000 0.00 0.00 39.56 2.10
1071 4145 4.665833 TGCGGTTATGCAGATACTTACT 57.334 40.909 0.00 0.00 40.62 2.24
1144 4218 6.016276 CAGGCATTTAATAGGTACCATGTTCC 60.016 42.308 15.94 5.57 0.00 3.62
1207 4282 4.249638 TGGCTGCTTATTTACCTGGATT 57.750 40.909 0.00 0.00 0.00 3.01
1306 4383 4.618489 GTCTGAAACTATTTGTGCATGCAC 59.382 41.667 38.00 38.00 46.33 4.57
1337 4415 3.858247 AGGTCAACGTATAAGGCAGAAC 58.142 45.455 0.00 0.00 0.00 3.01
1357 4435 1.467734 CTGCTGTTCTGCACTTGATCC 59.532 52.381 0.48 0.00 38.12 3.36
1371 4449 5.293079 GCACTTGATCCTCTTGTCTATCAAC 59.707 44.000 0.00 0.00 34.34 3.18
1373 4451 7.102346 CACTTGATCCTCTTGTCTATCAACTT 58.898 38.462 0.00 0.00 34.34 2.66
1382 4460 7.227512 CCTCTTGTCTATCAACTTTCACTGTTT 59.772 37.037 0.00 0.00 32.18 2.83
1384 4462 6.618287 TGTCTATCAACTTTCACTGTTTGG 57.382 37.500 0.00 0.00 0.00 3.28
1454 4537 2.622064 ATTGGGGCGAGAGTATTCAC 57.378 50.000 0.00 0.00 0.00 3.18
1576 4964 2.445427 TCCATGTGTACCCTTGCAATG 58.555 47.619 0.00 0.00 0.00 2.82
1610 5003 8.523658 ACTTAGTTTTCATTAATTCCTTGCTCC 58.476 33.333 0.00 0.00 0.00 4.70
1620 5013 0.762418 TCCTTGCTCCGACCTTTTGA 59.238 50.000 0.00 0.00 0.00 2.69
1730 5227 8.061857 TCAACTAATTGCGAAAATTATAGCTCG 58.938 33.333 0.00 0.00 35.63 5.03
1813 5313 5.050644 TGTGCAAAGCTAAGAATGATGTG 57.949 39.130 0.00 0.00 0.00 3.21
2005 5544 7.708322 TCTGCTTCTCTTAACATATCATGTGTC 59.292 37.037 0.00 0.00 44.07 3.67
2107 5646 7.604657 TCTGTTGGGGTATGTGTTTTTAATT 57.395 32.000 0.00 0.00 0.00 1.40
2172 5801 9.699703 TGCCTTGTGGTAACTAAAATTTAAATC 57.300 29.630 0.10 0.00 35.27 2.17
2308 6044 8.833493 TGCATAAATGTGTGATTATGAGAAGAG 58.167 33.333 9.12 0.00 40.38 2.85
2320 6056 8.378565 TGATTATGAGAAGAGGACTCAAGTTTT 58.621 33.333 0.00 0.00 45.44 2.43
2353 6091 7.785028 ACATAGTTGATACTAGAAGATGACCCA 59.215 37.037 0.00 0.00 40.09 4.51
2445 6184 8.651391 TTATGATGTGATGGAAAATGATTTGC 57.349 30.769 0.00 0.00 37.38 3.68
2449 6188 3.619929 GTGATGGAAAATGATTTGCCAGC 59.380 43.478 23.10 23.10 36.15 4.85
2461 6200 0.462375 TTGCCAGCCATGCATGATTC 59.538 50.000 28.31 15.55 38.76 2.52
2462 6201 1.007734 GCCAGCCATGCATGATTCG 60.008 57.895 28.31 12.10 0.00 3.34
2463 6202 1.731433 GCCAGCCATGCATGATTCGT 61.731 55.000 28.31 4.43 0.00 3.85
2464 6203 0.742505 CCAGCCATGCATGATTCGTT 59.257 50.000 28.31 6.23 0.00 3.85
2465 6204 1.535226 CCAGCCATGCATGATTCGTTG 60.535 52.381 28.31 17.47 0.00 4.10
2466 6205 0.742505 AGCCATGCATGATTCGTTGG 59.257 50.000 28.31 11.38 0.00 3.77
2481 6220 1.801025 CGTTGGTGTGAAAAGGGTTGC 60.801 52.381 0.00 0.00 0.00 4.17
2498 6237 3.127548 GGTTGCACACATGGACAAGATAG 59.872 47.826 0.00 0.00 0.00 2.08
2514 6253 7.068348 GGACAAGATAGTTAGTGTGATGGTAGA 59.932 40.741 0.00 0.00 0.00 2.59
2515 6254 8.540507 ACAAGATAGTTAGTGTGATGGTAGAT 57.459 34.615 0.00 0.00 0.00 1.98
2516 6255 8.982723 ACAAGATAGTTAGTGTGATGGTAGATT 58.017 33.333 0.00 0.00 0.00 2.40
2523 6262 9.770097 AGTTAGTGTGATGGTAGATTAATGATG 57.230 33.333 0.00 0.00 0.00 3.07
2524 6263 9.547753 GTTAGTGTGATGGTAGATTAATGATGT 57.452 33.333 0.00 0.00 0.00 3.06
2525 6264 9.546428 TTAGTGTGATGGTAGATTAATGATGTG 57.454 33.333 0.00 0.00 0.00 3.21
2526 6265 6.994496 AGTGTGATGGTAGATTAATGATGTGG 59.006 38.462 0.00 0.00 0.00 4.17
2527 6266 5.764686 TGTGATGGTAGATTAATGATGTGGC 59.235 40.000 0.00 0.00 0.00 5.01
2528 6267 4.996758 TGATGGTAGATTAATGATGTGGCG 59.003 41.667 0.00 0.00 0.00 5.69
2529 6268 3.738982 TGGTAGATTAATGATGTGGCGG 58.261 45.455 0.00 0.00 0.00 6.13
2530 6269 3.389656 TGGTAGATTAATGATGTGGCGGA 59.610 43.478 0.00 0.00 0.00 5.54
2531 6270 3.746492 GGTAGATTAATGATGTGGCGGAC 59.254 47.826 0.00 0.00 0.00 4.79
2532 6271 3.558931 AGATTAATGATGTGGCGGACA 57.441 42.857 0.00 0.00 39.53 4.02
2533 6272 3.884895 AGATTAATGATGTGGCGGACAA 58.115 40.909 0.00 0.00 38.36 3.18
2534 6273 3.879295 AGATTAATGATGTGGCGGACAAG 59.121 43.478 0.00 0.00 38.36 3.16
2535 6274 1.378531 TAATGATGTGGCGGACAAGC 58.621 50.000 0.00 0.00 38.36 4.01
2536 6275 0.608856 AATGATGTGGCGGACAAGCA 60.609 50.000 0.00 0.00 38.36 3.91
2537 6276 0.394762 ATGATGTGGCGGACAAGCAT 60.395 50.000 0.00 0.00 38.36 3.79
2538 6277 1.307355 TGATGTGGCGGACAAGCATG 61.307 55.000 0.00 0.00 38.36 4.06
2539 6278 1.996786 GATGTGGCGGACAAGCATGG 61.997 60.000 0.00 0.00 38.36 3.66
2540 6279 2.672996 GTGGCGGACAAGCATGGT 60.673 61.111 0.00 0.00 39.27 3.55
2541 6280 2.115052 TGGCGGACAAGCATGGTT 59.885 55.556 3.82 3.82 39.27 3.67
2551 6290 3.719924 ACAAGCATGGTTTGTTGATGTG 58.280 40.909 7.57 0.00 35.32 3.21
2582 6321 8.580720 TGTTGCATGCTTAGGAAAAATAGTTAA 58.419 29.630 20.33 0.00 0.00 2.01
2585 6324 8.965819 TGCATGCTTAGGAAAAATAGTTAATGA 58.034 29.630 20.33 0.00 0.00 2.57
2648 6388 4.452825 TGTTTACAGACAACCGAAATGGA 58.547 39.130 0.00 0.00 42.00 3.41
2661 6401 5.070001 ACCGAAATGGATATATTGTGGTGG 58.930 41.667 0.00 0.00 42.00 4.61
2683 6423 7.608761 GGTGGTAATAAGTCTTCATGTTTGGTA 59.391 37.037 0.00 0.00 0.00 3.25
2730 6476 6.909550 TGCAAAGGGATACTACATTTGTTT 57.090 33.333 0.00 0.00 34.22 2.83
2875 6630 5.576563 TTGACAGGATAACTTTTGGGAGA 57.423 39.130 0.00 0.00 0.00 3.71
2910 6666 1.205055 GTTAGGCAAGCTAGGGGTCT 58.795 55.000 0.00 0.00 0.00 3.85
2919 6675 2.721945 CTAGGGGTCTAGCCGAGTG 58.278 63.158 0.00 0.00 36.86 3.51
2947 6703 2.159170 GGAGCGGATGATATCACTAGCC 60.159 54.545 7.78 6.62 0.00 3.93
2955 6713 6.260271 CGGATGATATCACTAGCCGAGTTATA 59.740 42.308 23.19 0.00 39.62 0.98
3034 6792 6.348540 CCTTTGAGTGGTAATTTTTCCTCTCG 60.349 42.308 11.13 0.00 43.21 4.04
3035 6793 5.477607 TGAGTGGTAATTTTTCCTCTCGA 57.522 39.130 11.13 0.00 43.21 4.04
3038 6796 7.265673 TGAGTGGTAATTTTTCCTCTCGATAG 58.734 38.462 11.13 0.00 43.21 2.08
3045 6803 4.921470 TTTTCCTCTCGATAGTTTTGCG 57.079 40.909 0.00 0.00 37.40 4.85
3048 6806 0.572590 CTCTCGATAGTTTTGCGGCG 59.427 55.000 0.51 0.51 37.40 6.46
3050 6808 0.572590 CTCGATAGTTTTGCGGCGAG 59.427 55.000 12.98 0.00 39.12 5.03
3146 6909 8.156165 TGAAATTTGAGCAACATCCCTTAATTT 58.844 29.630 0.00 0.00 0.00 1.82
3160 6923 4.278419 CCCTTAATTTTCTGGCCTTATCGG 59.722 45.833 3.32 0.00 0.00 4.18
3191 6954 2.659023 CGCATTGTATGGTTACGCGATG 60.659 50.000 15.93 2.46 37.68 3.84
3204 6967 0.597637 CGCGATGCTTACTAGGGTGG 60.598 60.000 0.00 0.00 0.00 4.61
3219 6982 6.930475 ACTAGGGTGGTGATACTTATTAGGA 58.070 40.000 0.00 0.00 0.00 2.94
3239 7023 8.978874 TTAGGATGTACATTGCACTAATTGAT 57.021 30.769 10.30 0.00 0.00 2.57
3241 7025 8.383318 AGGATGTACATTGCACTAATTGATAC 57.617 34.615 10.30 0.00 0.00 2.24
3243 7027 9.489084 GGATGTACATTGCACTAATTGATACTA 57.511 33.333 10.30 0.00 0.00 1.82
3368 7159 5.695818 ACATATTGTCTGTTGGTTAAACGC 58.304 37.500 0.00 0.00 42.10 4.84
3375 7166 1.941294 TGTTGGTTAAACGCGTGACAT 59.059 42.857 14.98 1.93 42.10 3.06
3381 7172 3.800506 GGTTAAACGCGTGACATATAGCT 59.199 43.478 14.98 0.00 0.00 3.32
3484 7317 6.512578 CGACAACTGTGGTGATTCAAATAACA 60.513 38.462 0.00 0.00 0.00 2.41
3489 7322 8.635765 ACTGTGGTGATTCAAATAACATAAGT 57.364 30.769 0.00 0.00 0.00 2.24
3514 7347 0.544697 ACGAACCACCACCAACTCTT 59.455 50.000 0.00 0.00 0.00 2.85
3520 7353 4.287766 ACCACCACCAACTCTTATCTTC 57.712 45.455 0.00 0.00 0.00 2.87
3530 7366 7.278868 CACCAACTCTTATCTTCACCATTACTC 59.721 40.741 0.00 0.00 0.00 2.59
3564 7404 8.023128 GTGTAAACCTACTTTCGTGTAGATGTA 58.977 37.037 12.13 0.00 41.63 2.29
3597 7437 7.548967 TGATGAACATGGTGTAGTAACGATAA 58.451 34.615 0.00 0.00 0.00 1.75
3621 7465 5.701224 TGGGACTGAAAATAGGTTCACTTT 58.299 37.500 0.00 0.00 33.92 2.66
3675 7526 8.862325 ATTGTGGATAAGTGAGTGATTTGTTA 57.138 30.769 0.00 0.00 0.00 2.41
3680 7531 9.166173 TGGATAAGTGAGTGATTTGTTATTCTG 57.834 33.333 0.00 0.00 0.00 3.02
3760 7611 1.260561 GGTATAGTGATTTGTGCGGCG 59.739 52.381 0.51 0.51 0.00 6.46
3808 7659 3.845860 AGGACCGGAGCTCAAATCTATA 58.154 45.455 17.19 0.00 0.00 1.31
3990 7846 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3992 7848 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3994 7850 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3996 7852 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4004 7860 0.167908 GTGTGTGTGTGTGTGTGTGG 59.832 55.000 0.00 0.00 0.00 4.17
4024 7880 1.268234 GGCGCATGTTCAGATGCTAAC 60.268 52.381 10.83 0.00 45.60 2.34
4111 7985 4.245660 CCTTCAGATTGTCTTTGCGACTA 58.754 43.478 0.00 0.00 43.25 2.59
4246 8122 4.387862 CAGCAACAGCAAATCCTTCATTTC 59.612 41.667 0.00 0.00 31.79 2.17
4261 8138 5.808030 CCTTCATTTCTTACGAGACCTCTTC 59.192 44.000 0.00 0.00 0.00 2.87
4275 8152 1.152030 TCTTCAGAGGGTGGGCAGT 60.152 57.895 0.00 0.00 0.00 4.40
4310 8189 3.602205 AAGAAGAAAAGAGTTGGGCCT 57.398 42.857 4.53 0.00 0.00 5.19
4316 8195 4.542697 AGAAAAGAGTTGGGCCTGTTAAA 58.457 39.130 4.53 0.00 0.00 1.52
4390 8309 8.558700 GTTACCGTGGAAGTACAAAAGAAAATA 58.441 33.333 0.00 0.00 0.00 1.40
4399 8320 9.498176 GAAGTACAAAAGAAAATACTGACCCTA 57.502 33.333 0.00 0.00 0.00 3.53
4543 8464 9.160496 GTTATCACAATCATTCTCTCACTTCTT 57.840 33.333 0.00 0.00 0.00 2.52
4606 8531 6.844696 TGTTTGCTTGTTAGACAGAAGTAG 57.155 37.500 0.00 0.00 0.00 2.57
4827 8755 2.917933 CGGGATTCAATCAAGCCAGTA 58.082 47.619 0.00 0.00 43.08 2.74
4835 8763 3.157087 CAATCAAGCCAGTACCAGGTTT 58.843 45.455 0.00 1.60 0.00 3.27
4839 8767 2.489329 CAAGCCAGTACCAGGTTTGATG 59.511 50.000 20.15 1.56 46.47 3.07
4873 8801 2.105477 ACATCAAGCTGAACTGTGACCT 59.895 45.455 0.00 0.00 0.00 3.85
4878 8806 1.202580 AGCTGAACTGTGACCTGTGTC 60.203 52.381 0.00 0.00 42.12 3.67
4899 8827 5.118990 GTCAGCCATAATCTTGACTTAGCA 58.881 41.667 0.00 0.00 0.00 3.49
5013 8941 2.168313 ACTGGATGTGATCGTGTGCATA 59.832 45.455 0.00 0.00 0.00 3.14
5026 8954 3.435327 CGTGTGCATACATGGTTGTTAGT 59.565 43.478 14.34 0.00 39.61 2.24
5046 9012 1.663702 GGTTAGCTCGTGCGTGTGT 60.664 57.895 3.48 0.00 45.42 3.72
5050 9016 2.344521 TAGCTCGTGCGTGTGTGTGT 62.345 55.000 3.48 0.00 45.42 3.72
5123 9090 1.511613 ACCCCTCCCATGTACTGATG 58.488 55.000 0.00 0.00 0.00 3.07
5133 9100 2.099141 TGTACTGATGGAAGTGCTGC 57.901 50.000 0.00 0.00 34.26 5.25
5141 9108 0.673333 TGGAAGTGCTGCGGTATGTG 60.673 55.000 0.00 0.00 0.00 3.21
5142 9109 1.425428 GAAGTGCTGCGGTATGTGC 59.575 57.895 0.00 0.00 0.00 4.57
5173 10611 4.601019 AGTTCGTGCTCAATGAAAACTTG 58.399 39.130 0.00 0.00 35.55 3.16
5184 10622 2.920524 TGAAAACTTGGGCTGTTCGTA 58.079 42.857 0.00 0.00 0.00 3.43
5233 10671 3.343380 CGTATGTGCGCCGGATATATA 57.657 47.619 5.05 0.00 0.00 0.86
5251 10689 2.176247 TATGTGTCCCTCTCCTTCCC 57.824 55.000 0.00 0.00 0.00 3.97
5261 10699 2.043652 TCCTTCCCCCTACGTCCG 60.044 66.667 0.00 0.00 0.00 4.79
5288 10726 3.008157 AGTGTGAGAGAGAGGTAGTTCGA 59.992 47.826 0.00 0.00 0.00 3.71
5289 10727 3.372822 GTGTGAGAGAGAGGTAGTTCGAG 59.627 52.174 0.00 0.00 0.00 4.04
5302 10740 1.210967 AGTTCGAGGTTTGTCCCAACA 59.789 47.619 0.00 0.00 36.75 3.33
5303 10741 2.018515 GTTCGAGGTTTGTCCCAACAA 58.981 47.619 0.00 0.00 43.58 2.83
5304 10742 1.670791 TCGAGGTTTGTCCCAACAAC 58.329 50.000 0.00 0.00 44.90 3.32
5305 10743 0.666374 CGAGGTTTGTCCCAACAACC 59.334 55.000 0.00 0.00 44.90 3.77
5306 10744 1.749286 CGAGGTTTGTCCCAACAACCT 60.749 52.381 2.41 2.41 44.90 3.50
5307 10745 1.681264 GAGGTTTGTCCCAACAACCTG 59.319 52.381 7.55 0.00 44.90 4.00
5308 10746 0.104120 GGTTTGTCCCAACAACCTGC 59.896 55.000 0.00 0.00 44.90 4.85
5309 10747 0.820871 GTTTGTCCCAACAACCTGCA 59.179 50.000 0.00 0.00 44.90 4.41
5310 10748 1.205893 GTTTGTCCCAACAACCTGCAA 59.794 47.619 0.00 0.00 44.90 4.08
5311 10749 1.786937 TTGTCCCAACAACCTGCAAT 58.213 45.000 0.00 0.00 40.45 3.56
5312 10750 1.327303 TGTCCCAACAACCTGCAATC 58.673 50.000 0.00 0.00 30.70 2.67
5313 10751 1.327303 GTCCCAACAACCTGCAATCA 58.673 50.000 0.00 0.00 0.00 2.57
5316 10754 2.299582 TCCCAACAACCTGCAATCATTG 59.700 45.455 0.00 0.00 0.00 2.82
5321 10759 5.933463 CCAACAACCTGCAATCATTGTTATT 59.067 36.000 13.69 0.00 41.98 1.40
5322 10760 7.095910 CCAACAACCTGCAATCATTGTTATTA 58.904 34.615 13.69 0.00 41.98 0.98
5327 10765 6.855836 ACCTGCAATCATTGTTATTAGTGTG 58.144 36.000 0.00 0.00 0.00 3.82
5364 10802 1.966451 GTCAGCCCACCAGAAACCG 60.966 63.158 0.00 0.00 0.00 4.44
5367 10805 1.528309 AGCCCACCAGAAACCGTTG 60.528 57.895 0.00 0.00 0.00 4.10
5388 10826 8.331022 CCGTTGAGAGATCTGTAATATTGTTTG 58.669 37.037 0.00 0.00 0.00 2.93
5394 10832 7.337689 AGAGATCTGTAATATTGTTTGCTGCAA 59.662 33.333 11.69 11.69 0.00 4.08
5395 10833 7.253422 AGATCTGTAATATTGTTTGCTGCAAC 58.747 34.615 15.72 10.84 0.00 4.17
5396 10834 6.573664 TCTGTAATATTGTTTGCTGCAACT 57.426 33.333 15.72 3.07 0.00 3.16
5397 10835 6.380995 TCTGTAATATTGTTTGCTGCAACTG 58.619 36.000 15.72 5.32 0.00 3.16
5398 10836 4.922692 TGTAATATTGTTTGCTGCAACTGC 59.077 37.500 15.72 8.99 42.50 4.40
5407 10845 2.666190 TGCAACTGCGAGTCAGCC 60.666 61.111 0.00 0.00 46.76 4.85
5453 10891 1.210870 GCTTAACGTTCGTGTGGTGA 58.789 50.000 2.82 0.00 0.00 4.02
5461 10899 2.781101 CGTTCGTGTGGTGAATTTTGTG 59.219 45.455 0.00 0.00 0.00 3.33
5488 10926 7.065683 TGTGTGAGGTTATACTTGCATGTTATG 59.934 37.037 10.85 0.00 0.00 1.90
5536 11009 3.026694 ACTTTTCTTGGCACTTTGCTCT 58.973 40.909 0.00 0.00 44.28 4.09
5548 11302 4.686554 GCACTTTGCTCTTATATACCTCCG 59.313 45.833 0.00 0.00 40.96 4.63
5560 11314 0.396695 TACCTCCGTCCATCCACCTC 60.397 60.000 0.00 0.00 0.00 3.85
5565 11319 0.613260 CCGTCCATCCACCTCTTTCA 59.387 55.000 0.00 0.00 0.00 2.69
5566 11320 1.406069 CCGTCCATCCACCTCTTTCAG 60.406 57.143 0.00 0.00 0.00 3.02
5574 11328 1.066286 CCACCTCTTTCAGCTCCTCAG 60.066 57.143 0.00 0.00 0.00 3.35
5601 11355 2.361104 GAGCCCCCAAATCGTGCA 60.361 61.111 0.00 0.00 0.00 4.57
5612 11366 0.396435 AATCGTGCACCACCAGAGAA 59.604 50.000 12.15 0.00 0.00 2.87
5616 11370 1.066858 CGTGCACCACCAGAGAATAGT 60.067 52.381 12.15 0.00 0.00 2.12
5638 11392 2.039787 TCCAGGCCGTCACCCATA 59.960 61.111 0.00 0.00 0.00 2.74
5641 11395 1.410850 CCAGGCCGTCACCCATATCT 61.411 60.000 0.00 0.00 0.00 1.98
5642 11396 1.338107 CAGGCCGTCACCCATATCTA 58.662 55.000 0.00 0.00 0.00 1.98
5643 11397 1.273606 CAGGCCGTCACCCATATCTAG 59.726 57.143 0.00 0.00 0.00 2.43
5647 11401 1.964223 CCGTCACCCATATCTAGTGCT 59.036 52.381 0.00 0.00 0.00 4.40
5648 11402 2.288457 CCGTCACCCATATCTAGTGCTG 60.288 54.545 0.00 0.00 0.00 4.41
5656 11410 1.032794 TATCTAGTGCTGCGAGGTGG 58.967 55.000 0.00 0.00 0.00 4.61
5690 11444 4.400961 GCGTCTCCAGCAAGCCCT 62.401 66.667 0.00 0.00 34.19 5.19
5691 11445 2.125350 CGTCTCCAGCAAGCCCTC 60.125 66.667 0.00 0.00 0.00 4.30
5692 11446 2.654079 CGTCTCCAGCAAGCCCTCT 61.654 63.158 0.00 0.00 0.00 3.69
5694 11448 0.392327 GTCTCCAGCAAGCCCTCTTC 60.392 60.000 0.00 0.00 0.00 2.87
5695 11449 0.546267 TCTCCAGCAAGCCCTCTTCT 60.546 55.000 0.00 0.00 0.00 2.85
5696 11450 0.392729 CTCCAGCAAGCCCTCTTCTG 60.393 60.000 0.00 0.00 32.34 3.02
5697 11451 0.837691 TCCAGCAAGCCCTCTTCTGA 60.838 55.000 0.00 0.00 33.35 3.27
5699 11453 0.324285 CAGCAAGCCCTCTTCTGAGT 59.676 55.000 0.00 0.00 38.61 3.41
5700 11454 0.324285 AGCAAGCCCTCTTCTGAGTG 59.676 55.000 0.00 0.00 38.61 3.51
5701 11455 1.304509 GCAAGCCCTCTTCTGAGTGC 61.305 60.000 0.00 0.00 42.71 4.40
5732 11503 3.141488 AGAGGAGCGTAGTGGCCG 61.141 66.667 0.00 0.00 0.00 6.13
5766 11537 1.562672 GGGACCCTTAGCCAAGCTCA 61.563 60.000 2.09 0.00 40.44 4.26
5779 11550 1.107114 AAGCTCATCGACGAGGACAT 58.893 50.000 10.93 0.00 33.36 3.06
5783 11554 0.179111 TCATCGACGAGGACATTGCC 60.179 55.000 8.33 0.00 0.00 4.52
5785 11556 3.554692 CGACGAGGACATTGCCGC 61.555 66.667 0.00 0.00 0.00 6.53
5787 11558 4.778143 ACGAGGACATTGCCGCCC 62.778 66.667 0.00 0.00 0.00 6.13
5804 11575 4.976925 CCCGCGCTCTGCCCTATG 62.977 72.222 5.56 0.00 42.08 2.23
5812 11583 4.456806 CTGCCCTATGCGGTAACC 57.543 61.111 0.00 0.00 45.60 2.85
5813 11584 1.227853 CTGCCCTATGCGGTAACCC 60.228 63.158 0.00 0.00 45.60 4.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 3056 2.206576 AGGAAAAGGGCAGCAGTAAG 57.793 50.000 0.00 0.00 0.00 2.34
124 3148 9.793259 ACATTATTCTGTTTGAAAGAGGTCTTA 57.207 29.630 2.07 0.00 38.29 2.10
210 3234 4.813697 GGATGCTTCTTGGACATTCTCTAC 59.186 45.833 0.00 0.00 0.00 2.59
211 3235 4.442052 CGGATGCTTCTTGGACATTCTCTA 60.442 45.833 0.00 0.00 0.00 2.43
214 3238 2.237143 TCGGATGCTTCTTGGACATTCT 59.763 45.455 0.00 0.00 0.00 2.40
225 3249 1.066858 TCAAGGTGACTCGGATGCTTC 60.067 52.381 0.00 0.00 42.68 3.86
247 3271 8.871686 ACATTTCAATAGTTCCAACTTTCAAC 57.128 30.769 0.00 0.00 40.37 3.18
298 3322 9.830975 ACCAGTTGCTTAGTTCAAAATTAAAAT 57.169 25.926 0.00 0.00 0.00 1.82
302 3326 7.341445 ACACCAGTTGCTTAGTTCAAAATTA 57.659 32.000 0.00 0.00 0.00 1.40
303 3327 6.220726 ACACCAGTTGCTTAGTTCAAAATT 57.779 33.333 0.00 0.00 0.00 1.82
304 3328 5.852282 ACACCAGTTGCTTAGTTCAAAAT 57.148 34.783 0.00 0.00 0.00 1.82
308 3332 4.968259 ACATACACCAGTTGCTTAGTTCA 58.032 39.130 0.00 0.00 0.00 3.18
309 3333 6.090898 CACTACATACACCAGTTGCTTAGTTC 59.909 42.308 0.00 0.00 0.00 3.01
311 3335 5.479306 CACTACATACACCAGTTGCTTAGT 58.521 41.667 0.00 0.00 0.00 2.24
312 3336 4.870426 CCACTACATACACCAGTTGCTTAG 59.130 45.833 0.00 0.00 0.00 2.18
313 3337 4.528987 TCCACTACATACACCAGTTGCTTA 59.471 41.667 0.00 0.00 0.00 3.09
314 3338 3.326588 TCCACTACATACACCAGTTGCTT 59.673 43.478 0.00 0.00 0.00 3.91
315 3339 2.903784 TCCACTACATACACCAGTTGCT 59.096 45.455 0.00 0.00 0.00 3.91
316 3340 3.328382 TCCACTACATACACCAGTTGC 57.672 47.619 0.00 0.00 0.00 4.17
317 3341 3.684788 GCTTCCACTACATACACCAGTTG 59.315 47.826 0.00 0.00 0.00 3.16
318 3342 3.326588 TGCTTCCACTACATACACCAGTT 59.673 43.478 0.00 0.00 0.00 3.16
319 3343 2.903784 TGCTTCCACTACATACACCAGT 59.096 45.455 0.00 0.00 0.00 4.00
320 3344 3.055819 ACTGCTTCCACTACATACACCAG 60.056 47.826 0.00 0.00 0.00 4.00
321 3345 2.903784 ACTGCTTCCACTACATACACCA 59.096 45.455 0.00 0.00 0.00 4.17
322 3346 3.611766 ACTGCTTCCACTACATACACC 57.388 47.619 0.00 0.00 0.00 4.16
323 3347 5.532025 GAAACTGCTTCCACTACATACAC 57.468 43.478 0.00 0.00 0.00 2.90
333 3357 9.709693 GAAACACATTCAAGGAAACTGCTTCCA 62.710 40.741 12.07 0.00 45.40 3.53
334 3358 7.443910 GAAACACATTCAAGGAAACTGCTTCC 61.444 42.308 1.52 1.52 44.43 3.46
335 3359 4.574599 ACACATTCAAGGAAACTGCTTC 57.425 40.909 0.00 0.00 42.68 3.86
336 3360 5.127682 AGAAACACATTCAAGGAAACTGCTT 59.872 36.000 0.00 0.00 40.72 3.91
337 3361 4.646492 AGAAACACATTCAAGGAAACTGCT 59.354 37.500 0.00 0.00 40.72 4.24
338 3362 4.936891 AGAAACACATTCAAGGAAACTGC 58.063 39.130 0.00 0.00 40.72 4.40
339 3363 7.479980 TGTTAGAAACACATTCAAGGAAACTG 58.520 34.615 0.00 0.00 40.72 3.16
340 3364 7.339466 ACTGTTAGAAACACATTCAAGGAAACT 59.661 33.333 0.00 0.00 40.72 2.66
341 3365 7.480810 ACTGTTAGAAACACATTCAAGGAAAC 58.519 34.615 0.00 0.00 40.72 2.78
342 3366 7.639113 ACTGTTAGAAACACATTCAAGGAAA 57.361 32.000 0.00 0.00 40.72 3.13
343 3367 7.639113 AACTGTTAGAAACACATTCAAGGAA 57.361 32.000 0.00 0.00 40.72 3.36
344 3368 7.338196 TCAAACTGTTAGAAACACATTCAAGGA 59.662 33.333 0.00 0.00 40.72 3.36
345 3369 7.479980 TCAAACTGTTAGAAACACATTCAAGG 58.520 34.615 0.00 0.00 40.72 3.61
346 3370 8.909708 TTCAAACTGTTAGAAACACATTCAAG 57.090 30.769 0.00 0.00 40.72 3.02
347 3371 9.868277 ATTTCAAACTGTTAGAAACACATTCAA 57.132 25.926 0.00 0.00 40.72 2.69
354 3378 9.296400 GCAACTTATTTCAAACTGTTAGAAACA 57.704 29.630 0.00 0.00 39.52 2.83
355 3379 8.752254 GGCAACTTATTTCAAACTGTTAGAAAC 58.248 33.333 0.00 0.00 34.47 2.78
356 3380 8.865590 GGCAACTTATTTCAAACTGTTAGAAA 57.134 30.769 0.00 0.00 35.92 2.52
376 3400 3.412237 TGTACCCTAAACTGAGGCAAC 57.588 47.619 0.00 0.00 35.00 4.17
377 3401 4.650972 ATTGTACCCTAAACTGAGGCAA 57.349 40.909 0.00 0.00 35.00 4.52
378 3402 4.650972 AATTGTACCCTAAACTGAGGCA 57.349 40.909 0.00 0.00 35.00 4.75
379 3403 5.977489 AAAATTGTACCCTAAACTGAGGC 57.023 39.130 0.00 0.00 35.00 4.70
404 3428 9.457436 ACCATCGTTTACCTCATATAAAAAGTT 57.543 29.630 0.00 0.00 0.00 2.66
405 3429 9.457436 AACCATCGTTTACCTCATATAAAAAGT 57.543 29.630 0.00 0.00 0.00 2.66
406 3430 9.716507 CAACCATCGTTTACCTCATATAAAAAG 57.283 33.333 0.00 0.00 0.00 2.27
407 3431 9.451002 TCAACCATCGTTTACCTCATATAAAAA 57.549 29.630 0.00 0.00 0.00 1.94
408 3432 9.451002 TTCAACCATCGTTTACCTCATATAAAA 57.549 29.630 0.00 0.00 0.00 1.52
409 3433 9.621629 ATTCAACCATCGTTTACCTCATATAAA 57.378 29.630 0.00 0.00 0.00 1.40
410 3434 9.268268 GATTCAACCATCGTTTACCTCATATAA 57.732 33.333 0.00 0.00 0.00 0.98
411 3435 8.425703 TGATTCAACCATCGTTTACCTCATATA 58.574 33.333 0.00 0.00 0.00 0.86
412 3436 7.279615 TGATTCAACCATCGTTTACCTCATAT 58.720 34.615 0.00 0.00 0.00 1.78
413 3437 6.645306 TGATTCAACCATCGTTTACCTCATA 58.355 36.000 0.00 0.00 0.00 2.15
414 3438 5.496556 TGATTCAACCATCGTTTACCTCAT 58.503 37.500 0.00 0.00 0.00 2.90
415 3439 4.900684 TGATTCAACCATCGTTTACCTCA 58.099 39.130 0.00 0.00 0.00 3.86
416 3440 6.984474 TCTATGATTCAACCATCGTTTACCTC 59.016 38.462 0.00 0.00 0.00 3.85
417 3441 6.761714 GTCTATGATTCAACCATCGTTTACCT 59.238 38.462 0.00 0.00 0.00 3.08
418 3442 6.537301 TGTCTATGATTCAACCATCGTTTACC 59.463 38.462 0.00 0.00 0.00 2.85
419 3443 7.277981 ACTGTCTATGATTCAACCATCGTTTAC 59.722 37.037 0.00 0.00 0.00 2.01
420 3444 7.327975 ACTGTCTATGATTCAACCATCGTTTA 58.672 34.615 0.00 0.00 0.00 2.01
421 3445 6.173339 ACTGTCTATGATTCAACCATCGTTT 58.827 36.000 0.00 0.00 0.00 3.60
422 3446 5.734720 ACTGTCTATGATTCAACCATCGTT 58.265 37.500 0.00 0.00 0.00 3.85
423 3447 5.344743 ACTGTCTATGATTCAACCATCGT 57.655 39.130 0.00 0.00 0.00 3.73
424 3448 6.668541 AAACTGTCTATGATTCAACCATCG 57.331 37.500 0.00 0.00 0.00 3.84
431 3455 9.624697 GCAACATTAAAAACTGTCTATGATTCA 57.375 29.630 0.00 0.00 0.00 2.57
432 3456 9.076596 GGCAACATTAAAAACTGTCTATGATTC 57.923 33.333 0.00 0.00 0.00 2.52
433 3457 8.584157 TGGCAACATTAAAAACTGTCTATGATT 58.416 29.630 0.00 0.00 46.17 2.57
434 3458 8.121305 TGGCAACATTAAAAACTGTCTATGAT 57.879 30.769 0.00 0.00 46.17 2.45
435 3459 7.517614 TGGCAACATTAAAAACTGTCTATGA 57.482 32.000 0.00 0.00 46.17 2.15
477 3501 9.479549 AGGTCAAGGTATCAAAAATTACATGAT 57.520 29.630 0.00 6.01 37.54 2.45
478 3502 8.739039 CAGGTCAAGGTATCAAAAATTACATGA 58.261 33.333 0.00 0.00 0.00 3.07
479 3503 7.489113 GCAGGTCAAGGTATCAAAAATTACATG 59.511 37.037 0.00 0.00 0.00 3.21
480 3504 7.178274 TGCAGGTCAAGGTATCAAAAATTACAT 59.822 33.333 0.00 0.00 0.00 2.29
481 3505 6.491745 TGCAGGTCAAGGTATCAAAAATTACA 59.508 34.615 0.00 0.00 0.00 2.41
482 3506 6.919721 TGCAGGTCAAGGTATCAAAAATTAC 58.080 36.000 0.00 0.00 0.00 1.89
483 3507 7.531857 TTGCAGGTCAAGGTATCAAAAATTA 57.468 32.000 0.00 0.00 0.00 1.40
484 3508 6.418057 TTGCAGGTCAAGGTATCAAAAATT 57.582 33.333 0.00 0.00 0.00 1.82
485 3509 6.029346 CTTGCAGGTCAAGGTATCAAAAAT 57.971 37.500 0.00 0.00 46.50 1.82
486 3510 5.452078 CTTGCAGGTCAAGGTATCAAAAA 57.548 39.130 0.00 0.00 46.50 1.94
497 3521 1.024271 GTGCTTCACTTGCAGGTCAA 58.976 50.000 0.00 0.00 41.41 3.18
498 3522 0.181114 AGTGCTTCACTTGCAGGTCA 59.819 50.000 0.00 0.00 42.59 4.02
499 3523 3.012560 AGTGCTTCACTTGCAGGTC 57.987 52.632 0.00 0.00 42.59 3.85
504 3528 7.396098 AGGAACTTCAAAGTGCTTCACTTGC 62.396 44.000 12.31 0.00 46.00 4.01
505 3529 4.096984 AGGAACTTCAAAGTGCTTCACTTG 59.903 41.667 12.31 7.58 46.00 3.16
508 3532 5.948992 ATAGGAACTTCAAAGTGCTTCAC 57.051 39.130 1.01 0.00 41.75 3.18
514 3538 8.633561 AGAAAAGGAAATAGGAACTTCAAAGTG 58.366 33.333 0.00 0.00 41.75 3.16
519 3543 8.322091 CCTAGAGAAAAGGAAATAGGAACTTCA 58.678 37.037 0.00 0.00 36.57 3.02
534 3558 7.164803 AGGTTGTTCATCTTCCTAGAGAAAAG 58.835 38.462 0.00 0.00 32.88 2.27
596 3620 6.423604 ACCAATGCACAACTATTTTGCTAAAC 59.576 34.615 0.00 0.00 37.16 2.01
599 3623 5.720371 ACCAATGCACAACTATTTTGCTA 57.280 34.783 0.00 0.00 37.16 3.49
603 3627 6.352516 TCCAAAACCAATGCACAACTATTTT 58.647 32.000 0.00 0.00 0.00 1.82
702 3763 7.011576 TCACAACATCAAAACGTTACACTGTAT 59.988 33.333 0.00 0.00 0.00 2.29
713 3774 7.077605 ACATCATACTTCACAACATCAAAACG 58.922 34.615 0.00 0.00 0.00 3.60
1035 4109 7.663905 TGCATAACCGCATAGATAAACCTTAAT 59.336 33.333 0.00 0.00 36.86 1.40
1071 4145 7.642082 TGTACCTTGGTTAAAAGCAACTTTA 57.358 32.000 3.33 0.00 41.03 1.85
1207 4282 4.943705 GCAAGTTTCCTAGATGACATCCAA 59.056 41.667 11.92 0.10 0.00 3.53
1306 4383 7.630082 GCCTTATACGTTGACCTACCCATATAG 60.630 44.444 0.00 0.00 0.00 1.31
1337 4415 1.467734 GGATCAAGTGCAGAACAGCAG 59.532 52.381 0.00 0.00 46.69 4.24
1347 4425 5.016051 TGATAGACAAGAGGATCAAGTGC 57.984 43.478 0.00 0.00 37.82 4.40
1357 4435 7.721286 AACAGTGAAAGTTGATAGACAAGAG 57.279 36.000 0.00 0.00 39.30 2.85
1454 4537 4.952262 AATCATGTCACCATTTCTCACG 57.048 40.909 0.00 0.00 0.00 4.35
1544 4932 5.068987 GGGTACACATGGATGCACATAAAAT 59.931 40.000 0.00 0.00 0.00 1.82
1610 5003 5.924475 ACTACACTGAAATCAAAAGGTCG 57.076 39.130 0.00 0.00 0.00 4.79
1620 5013 5.103000 GCGATGACTGTACTACACTGAAAT 58.897 41.667 0.00 0.00 0.00 2.17
1725 5222 1.415672 TTCCCCCACAAAGACGAGCT 61.416 55.000 0.00 0.00 0.00 4.09
1730 5227 2.160205 GCTACTTTCCCCCACAAAGAC 58.840 52.381 0.00 0.00 35.24 3.01
1947 5457 9.804977 TGGGGAAATGAAACAAATGAATTTTAT 57.195 25.926 0.00 0.00 0.00 1.40
1951 5461 6.044171 TCCTGGGGAAATGAAACAAATGAATT 59.956 34.615 0.00 0.00 0.00 2.17
2005 5544 3.599046 GCTGAAGCATAATTGAGACCG 57.401 47.619 0.00 0.00 41.59 4.79
2172 5801 3.999001 TGCTGAGCTTAGTTTGATGACAG 59.001 43.478 5.83 0.00 0.00 3.51
2271 6007 7.252708 TCACACATTTATGCAAAGCTATTCTG 58.747 34.615 0.00 0.00 0.00 3.02
2353 6091 4.096003 CCATCCCGAGGCAACCGT 62.096 66.667 0.00 0.00 37.17 4.83
2445 6184 0.742505 AACGAATCATGCATGGCTGG 59.257 50.000 25.97 16.10 0.00 4.85
2449 6188 1.473677 ACACCAACGAATCATGCATGG 59.526 47.619 25.97 11.90 0.00 3.66
2461 6200 1.801025 GCAACCCTTTTCACACCAACG 60.801 52.381 0.00 0.00 0.00 4.10
2462 6201 1.205893 TGCAACCCTTTTCACACCAAC 59.794 47.619 0.00 0.00 0.00 3.77
2463 6202 1.205893 GTGCAACCCTTTTCACACCAA 59.794 47.619 0.00 0.00 0.00 3.67
2464 6203 0.820871 GTGCAACCCTTTTCACACCA 59.179 50.000 0.00 0.00 0.00 4.17
2465 6204 0.820871 TGTGCAACCCTTTTCACACC 59.179 50.000 0.00 0.00 34.87 4.16
2481 6220 6.091305 CACACTAACTATCTTGTCCATGTGTG 59.909 42.308 0.00 0.00 43.07 3.82
2498 6237 9.547753 ACATCATTAATCTACCATCACACTAAC 57.452 33.333 0.00 0.00 0.00 2.34
2514 6253 2.358898 GCTTGTCCGCCACATCATTAAT 59.641 45.455 0.00 0.00 33.90 1.40
2515 6254 1.742831 GCTTGTCCGCCACATCATTAA 59.257 47.619 0.00 0.00 33.90 1.40
2516 6255 1.339535 TGCTTGTCCGCCACATCATTA 60.340 47.619 0.00 0.00 33.90 1.90
2517 6256 0.608856 TGCTTGTCCGCCACATCATT 60.609 50.000 0.00 0.00 33.90 2.57
2518 6257 0.394762 ATGCTTGTCCGCCACATCAT 60.395 50.000 0.00 0.00 33.90 2.45
2519 6258 1.002257 ATGCTTGTCCGCCACATCA 60.002 52.632 0.00 0.00 33.90 3.07
2520 6259 1.430632 CATGCTTGTCCGCCACATC 59.569 57.895 0.00 0.00 33.90 3.06
2521 6260 2.048023 CCATGCTTGTCCGCCACAT 61.048 57.895 0.00 0.00 33.90 3.21
2522 6261 2.672651 CCATGCTTGTCCGCCACA 60.673 61.111 0.00 0.00 0.00 4.17
2523 6262 1.805428 AAACCATGCTTGTCCGCCAC 61.805 55.000 0.00 0.00 0.00 5.01
2524 6263 1.530419 AAACCATGCTTGTCCGCCA 60.530 52.632 0.00 0.00 0.00 5.69
2525 6264 1.080569 CAAACCATGCTTGTCCGCC 60.081 57.895 0.00 0.00 0.00 6.13
2526 6265 0.031994 AACAAACCATGCTTGTCCGC 59.968 50.000 10.73 0.00 35.98 5.54
2527 6266 1.336440 TCAACAAACCATGCTTGTCCG 59.664 47.619 10.73 6.82 35.98 4.79
2528 6267 3.243839 ACATCAACAAACCATGCTTGTCC 60.244 43.478 10.73 0.00 35.98 4.02
2529 6268 3.737266 CACATCAACAAACCATGCTTGTC 59.263 43.478 10.73 0.00 35.98 3.18
2530 6269 3.493002 CCACATCAACAAACCATGCTTGT 60.493 43.478 5.77 5.77 38.65 3.16
2531 6270 3.061322 CCACATCAACAAACCATGCTTG 58.939 45.455 4.66 4.66 0.00 4.01
2532 6271 2.964464 TCCACATCAACAAACCATGCTT 59.036 40.909 0.00 0.00 0.00 3.91
2533 6272 2.596346 TCCACATCAACAAACCATGCT 58.404 42.857 0.00 0.00 0.00 3.79
2534 6273 3.243839 ACTTCCACATCAACAAACCATGC 60.244 43.478 0.00 0.00 0.00 4.06
2535 6274 4.202141 ACACTTCCACATCAACAAACCATG 60.202 41.667 0.00 0.00 0.00 3.66
2536 6275 3.960102 ACACTTCCACATCAACAAACCAT 59.040 39.130 0.00 0.00 0.00 3.55
2537 6276 3.360867 ACACTTCCACATCAACAAACCA 58.639 40.909 0.00 0.00 0.00 3.67
2538 6277 4.111916 CAACACTTCCACATCAACAAACC 58.888 43.478 0.00 0.00 0.00 3.27
2539 6278 3.551485 GCAACACTTCCACATCAACAAAC 59.449 43.478 0.00 0.00 0.00 2.93
2540 6279 3.194329 TGCAACACTTCCACATCAACAAA 59.806 39.130 0.00 0.00 0.00 2.83
2541 6280 2.757314 TGCAACACTTCCACATCAACAA 59.243 40.909 0.00 0.00 0.00 2.83
2551 6290 2.436417 TCCTAAGCATGCAACACTTCC 58.564 47.619 21.98 0.00 0.00 3.46
2617 6356 7.211573 TCGGTTGTCTGTAAACATTTCTAAGA 58.788 34.615 0.00 0.00 0.00 2.10
2618 6357 7.416154 TCGGTTGTCTGTAAACATTTCTAAG 57.584 36.000 0.00 0.00 0.00 2.18
2624 6363 5.533154 TCCATTTCGGTTGTCTGTAAACATT 59.467 36.000 0.00 0.00 35.57 2.71
2635 6374 6.039270 CACCACAATATATCCATTTCGGTTGT 59.961 38.462 0.00 0.00 35.57 3.32
2637 6376 5.534654 CCACCACAATATATCCATTTCGGTT 59.465 40.000 0.00 0.00 35.57 4.44
2638 6377 5.070001 CCACCACAATATATCCATTTCGGT 58.930 41.667 0.00 0.00 35.57 4.69
2639 6378 5.070001 ACCACCACAATATATCCATTTCGG 58.930 41.667 0.00 0.00 0.00 4.30
2668 6408 9.974980 TTTATTTCCTTTACCAAACATGAAGAC 57.025 29.630 0.00 0.00 0.00 3.01
2707 6449 6.909550 AAACAAATGTAGTATCCCTTTGCA 57.090 33.333 0.00 0.00 31.59 4.08
2770 6520 7.448469 GGCTTGGGAAGATCTTGCTATAAATAA 59.552 37.037 24.03 3.78 0.00 1.40
2793 6543 1.071909 AGGTTGGGTTTGGTAGGGCT 61.072 55.000 0.00 0.00 0.00 5.19
2823 6576 4.929198 CAAGCTTGAGCGTGGTTG 57.071 55.556 22.31 0.50 44.75 3.77
2875 6630 2.572104 CCTAACTCAACCAAGCTAGGGT 59.428 50.000 4.20 4.20 41.41 4.34
2887 6643 1.559682 CCCCTAGCTTGCCTAACTCAA 59.440 52.381 0.00 0.00 0.00 3.02
2910 6666 0.970937 CTCCCCTTGTCACTCGGCTA 60.971 60.000 0.00 0.00 0.00 3.93
2919 6675 1.048601 TATCATCCGCTCCCCTTGTC 58.951 55.000 0.00 0.00 0.00 3.18
2947 6703 4.574421 TCCAACCATTGCACATATAACTCG 59.426 41.667 0.00 0.00 0.00 4.18
2955 6713 4.158394 GTGTTATCTCCAACCATTGCACAT 59.842 41.667 0.00 0.00 0.00 3.21
3028 6786 0.931005 GCCGCAAAACTATCGAGAGG 59.069 55.000 12.41 0.00 0.00 3.69
3034 6792 3.465122 TTTTCTCGCCGCAAAACTATC 57.535 42.857 0.00 0.00 0.00 2.08
3035 6793 4.634443 ACTATTTTCTCGCCGCAAAACTAT 59.366 37.500 0.00 0.00 0.00 2.12
3038 6796 3.197434 ACTATTTTCTCGCCGCAAAAC 57.803 42.857 0.00 0.00 0.00 2.43
3045 6803 8.819643 ATAATCTCTGTAACTATTTTCTCGCC 57.180 34.615 0.00 0.00 0.00 5.54
3101 6864 4.502171 TCACACGAACGTAACCAATAGA 57.498 40.909 0.00 0.00 0.00 1.98
3146 6909 2.404559 ACATACCCGATAAGGCCAGAA 58.595 47.619 5.01 0.00 39.21 3.02
3160 6923 4.628074 ACCATACAATGCGACTACATACC 58.372 43.478 0.00 0.00 0.00 2.73
3191 6954 6.667558 ATAAGTATCACCACCCTAGTAAGC 57.332 41.667 0.00 0.00 0.00 3.09
3204 6967 9.489084 TGCAATGTACATCCTAATAAGTATCAC 57.511 33.333 9.23 0.00 0.00 3.06
3307 7091 3.875727 CAGTAGCAGCATGAGCATTTAGT 59.124 43.478 12.28 0.00 45.49 2.24
3343 7131 6.739550 GCGTTTAACCAACAGACAATATGTAC 59.260 38.462 0.00 0.00 34.68 2.90
3355 7146 1.366679 TGTCACGCGTTTAACCAACA 58.633 45.000 10.22 2.67 34.68 3.33
3368 7159 2.666026 ACGCATGAGCTATATGTCACG 58.334 47.619 0.00 8.88 39.10 4.35
3484 7317 4.562143 GGTGGTGGTTCGTTCACTACTTAT 60.562 45.833 16.06 0.00 43.25 1.73
3489 7322 1.121378 TGGTGGTGGTTCGTTCACTA 58.879 50.000 0.00 0.00 35.61 2.74
3520 7353 9.148104 GGTTTACACTACTAAAGAGTAATGGTG 57.852 37.037 0.00 0.00 39.26 4.17
3553 7393 5.576774 TCATCAAAGCACTTACATCTACACG 59.423 40.000 0.00 0.00 0.00 4.49
3564 7404 3.638160 ACACCATGTTCATCAAAGCACTT 59.362 39.130 0.00 0.00 0.00 3.16
3597 7437 5.520748 AGTGAACCTATTTTCAGTCCCAT 57.479 39.130 0.00 0.00 34.63 4.00
3650 7501 7.765695 AACAAATCACTCACTTATCCACAAT 57.234 32.000 0.00 0.00 0.00 2.71
3675 7526 6.328672 AGACTCCATTCTACCATAAGCAGAAT 59.671 38.462 0.00 0.00 39.10 2.40
3680 7531 5.008118 GCAAAGACTCCATTCTACCATAAGC 59.992 44.000 0.00 0.00 0.00 3.09
3760 7611 3.582714 AACGCTAGTACAGTAACACCC 57.417 47.619 0.00 0.00 0.00 4.61
3808 7659 2.844348 ACGGAAAATAGGGTGATGGACT 59.156 45.455 0.00 0.00 0.00 3.85
3826 7677 0.944311 CAACTCGACTTGGGTGACGG 60.944 60.000 0.00 0.00 0.00 4.79
3856 7707 3.330198 TCCCAATATCCAGCTCCTTGAT 58.670 45.455 0.00 0.00 0.00 2.57
3956 7807 4.212004 CACACACACACCTGAATCTGTAAG 59.788 45.833 0.00 0.00 0.00 2.34
3990 7846 2.821810 CGCCCACACACACACACA 60.822 61.111 0.00 0.00 0.00 3.72
3992 7848 4.785453 TGCGCCCACACACACACA 62.785 61.111 4.18 0.00 0.00 3.72
3994 7850 3.285982 CATGCGCCCACACACACA 61.286 61.111 4.18 0.00 0.00 3.72
3996 7852 2.518112 AACATGCGCCCACACACA 60.518 55.556 4.18 0.00 0.00 3.72
4024 7880 4.276926 GCCCTAGAAGCAACATGGAATAAG 59.723 45.833 0.00 0.00 0.00 1.73
4261 8138 2.352805 GGAACTGCCCACCCTCTG 59.647 66.667 0.00 0.00 0.00 3.35
4272 8149 0.519519 TTAATGCAACGCGGGAACTG 59.480 50.000 12.47 0.18 38.10 3.16
4275 8152 1.466950 CTTCTTAATGCAACGCGGGAA 59.533 47.619 12.47 0.00 0.00 3.97
4310 8189 2.224597 GGTCCGGTTTCCCTCTTTAACA 60.225 50.000 0.00 0.00 0.00 2.41
4316 8195 3.001406 CGGGTCCGGTTTCCCTCT 61.001 66.667 22.31 0.00 41.40 3.69
4390 8309 9.975218 AATGTAAAGTAATTTCATAGGGTCAGT 57.025 29.630 0.00 0.00 29.87 3.41
4399 8320 9.528489 ACACCCTACAATGTAAAGTAATTTCAT 57.472 29.630 0.00 0.00 31.12 2.57
4543 8464 4.654262 CCAAGGGTAACAGCTTCTCCTATA 59.346 45.833 0.00 0.00 39.74 1.31
4641 8569 4.390909 GCGCCACTTATTACACTGTTAAGT 59.609 41.667 0.00 1.80 36.79 2.24
4642 8570 4.491924 CGCGCCACTTATTACACTGTTAAG 60.492 45.833 0.00 0.00 0.00 1.85
4827 8755 2.982488 AGTTCTCTCCATCAAACCTGGT 59.018 45.455 0.00 0.00 35.19 4.00
4835 8763 6.684865 GCTTGATGTATCAGTTCTCTCCATCA 60.685 42.308 0.00 0.00 38.19 3.07
4839 8767 5.049167 CAGCTTGATGTATCAGTTCTCTCC 58.951 45.833 0.00 0.00 38.19 3.71
4873 8801 4.558226 AGTCAAGATTATGGCTGACACA 57.442 40.909 4.09 0.00 33.07 3.72
4878 8806 4.025396 CGTGCTAAGTCAAGATTATGGCTG 60.025 45.833 0.00 0.00 34.95 4.85
4881 8809 4.260375 GCACGTGCTAAGTCAAGATTATGG 60.260 45.833 32.55 0.00 38.21 2.74
4957 8885 4.259292 GCTAACTGACTAAATACACGCACG 60.259 45.833 0.00 0.00 0.00 5.34
4967 8895 5.817296 CCTATGCATGTGCTAACTGACTAAA 59.183 40.000 10.16 0.00 42.66 1.85
5013 8941 4.725490 AGCTAACCAACTAACAACCATGT 58.275 39.130 0.00 0.00 43.14 3.21
5026 8954 1.068417 ACACGCACGAGCTAACCAA 59.932 52.632 2.73 0.00 39.10 3.67
5046 9012 1.152984 CCACTCTTGGCCACACACA 60.153 57.895 3.88 0.00 35.56 3.72
5123 9090 1.982073 GCACATACCGCAGCACTTCC 61.982 60.000 0.00 0.00 0.00 3.46
5141 9108 2.167861 GCACGAACTCTGGATCGGC 61.168 63.158 0.00 0.00 41.09 5.54
5142 9109 0.526524 GAGCACGAACTCTGGATCGG 60.527 60.000 0.00 0.00 41.09 4.18
5144 9111 2.370281 TTGAGCACGAACTCTGGATC 57.630 50.000 10.07 0.00 37.58 3.36
5145 9112 2.234661 TCATTGAGCACGAACTCTGGAT 59.765 45.455 10.07 1.37 37.58 3.41
5177 10615 4.424566 GCCTCGGCCGTACGAACA 62.425 66.667 27.15 1.93 42.98 3.18
5214 10652 4.444388 CACATATATATCCGGCGCACATAC 59.556 45.833 10.83 0.00 0.00 2.39
5228 10666 5.520343 GGGGAAGGAGAGGGACACATATATA 60.520 48.000 0.00 0.00 0.00 0.86
5233 10671 0.621862 GGGGAAGGAGAGGGACACAT 60.622 60.000 0.00 0.00 0.00 3.21
5251 10689 2.823147 ACTCGCTCGGACGTAGGG 60.823 66.667 0.00 0.00 0.00 3.53
5261 10699 0.732571 CCTCTCTCTCACACTCGCTC 59.267 60.000 0.00 0.00 0.00 5.03
5302 10740 7.039784 ACACACTAATAACAATGATTGCAGGTT 60.040 33.333 4.84 0.00 32.43 3.50
5303 10741 6.434028 ACACACTAATAACAATGATTGCAGGT 59.566 34.615 4.84 0.00 0.00 4.00
5304 10742 6.855836 ACACACTAATAACAATGATTGCAGG 58.144 36.000 4.84 0.00 0.00 4.85
5305 10743 9.838975 TTTACACACTAATAACAATGATTGCAG 57.161 29.630 4.84 0.00 0.00 4.41
5316 10754 8.797266 AGCAAAAGCTTTTACACACTAATAAC 57.203 30.769 23.44 1.77 0.00 1.89
5321 10759 6.443934 TGAAGCAAAAGCTTTTACACACTA 57.556 33.333 23.44 5.44 0.00 2.74
5322 10760 5.323371 TGAAGCAAAAGCTTTTACACACT 57.677 34.783 23.44 12.92 0.00 3.55
5327 10765 4.932146 TGACCTGAAGCAAAAGCTTTTAC 58.068 39.130 23.44 18.25 0.00 2.01
5364 10802 8.887717 AGCAAACAATATTACAGATCTCTCAAC 58.112 33.333 0.00 0.00 0.00 3.18
5367 10805 7.011763 TGCAGCAAACAATATTACAGATCTCTC 59.988 37.037 0.00 0.00 0.00 3.20
5388 10826 2.858868 CTGACTCGCAGTTGCAGC 59.141 61.111 4.84 0.00 42.21 5.25
5394 10832 1.142748 GCTATGGCTGACTCGCAGT 59.857 57.895 0.00 0.00 46.62 4.40
5396 10834 1.142531 CTGCTATGGCTGACTCGCA 59.857 57.895 1.68 0.00 39.31 5.10
5397 10835 2.243264 GCTGCTATGGCTGACTCGC 61.243 63.158 12.17 0.00 39.31 5.03
5398 10836 0.179089 AAGCTGCTATGGCTGACTCG 60.179 55.000 12.17 0.00 40.19 4.18
5453 10891 7.817418 AGTATAACCTCACACACACAAAATT 57.183 32.000 0.00 0.00 0.00 1.82
5461 10899 4.695455 ACATGCAAGTATAACCTCACACAC 59.305 41.667 0.00 0.00 0.00 3.82
5488 10926 5.064325 GGCATTTTCTCAAATTGCTCAATCC 59.936 40.000 12.93 0.00 43.56 3.01
5536 11009 4.091549 GGTGGATGGACGGAGGTATATAA 58.908 47.826 0.00 0.00 0.00 0.98
5548 11302 1.280421 AGCTGAAAGAGGTGGATGGAC 59.720 52.381 0.00 0.00 34.07 4.02
5597 11351 2.350522 CACTATTCTCTGGTGGTGCAC 58.649 52.381 8.80 8.80 32.96 4.57
5629 11383 2.760374 GCAGCACTAGATATGGGTGAC 58.240 52.381 0.00 0.00 33.32 3.67
5638 11392 1.819229 CCACCTCGCAGCACTAGAT 59.181 57.895 0.00 0.00 0.00 1.98
5641 11395 4.435436 CGCCACCTCGCAGCACTA 62.435 66.667 0.00 0.00 0.00 2.74
5647 11401 3.449227 CCTAGACGCCACCTCGCA 61.449 66.667 0.00 0.00 0.00 5.10
5648 11402 4.208686 CCCTAGACGCCACCTCGC 62.209 72.222 0.00 0.00 0.00 5.03
5675 11429 0.392327 GAAGAGGGCTTGCTGGAGAC 60.392 60.000 0.00 0.00 33.61 3.36
5681 11435 0.324285 CACTCAGAAGAGGGCTTGCT 59.676 55.000 0.00 0.00 46.44 3.91
5690 11444 4.742201 GGCGCCGCACTCAGAAGA 62.742 66.667 12.58 0.00 0.00 2.87
5710 11481 0.395311 CCACTACGCTCCTCTGGGTA 60.395 60.000 0.00 0.00 34.87 3.69
5712 11483 3.082579 GCCACTACGCTCCTCTGGG 62.083 68.421 0.00 0.00 0.00 4.45
5747 11518 1.224870 GAGCTTGGCTAAGGGTCCC 59.775 63.158 12.16 0.00 39.88 4.46
5760 11531 1.107114 ATGTCCTCGTCGATGAGCTT 58.893 50.000 26.20 11.00 34.56 3.74
5761 11532 1.107114 AATGTCCTCGTCGATGAGCT 58.893 50.000 26.20 9.65 34.56 4.09
5766 11537 1.226974 CGGCAATGTCCTCGTCGAT 60.227 57.895 0.00 0.00 0.00 3.59
5787 11558 4.976925 CATAGGGCAGAGCGCGGG 62.977 72.222 8.83 0.00 46.18 6.13
5795 11566 1.227853 GGGTTACCGCATAGGGCAG 60.228 63.158 0.00 0.00 46.96 4.85
5796 11567 2.748513 GGGGTTACCGCATAGGGCA 61.749 63.158 13.78 0.00 46.96 5.36
5797 11568 2.112507 GGGGTTACCGCATAGGGC 59.887 66.667 13.78 0.00 46.96 5.19
5798 11569 1.752833 GAGGGGTTACCGCATAGGG 59.247 63.158 20.45 0.00 46.96 3.53
5799 11570 1.752833 GGAGGGGTTACCGCATAGG 59.247 63.158 20.45 0.00 46.96 2.57
5800 11571 1.752833 GGGAGGGGTTACCGCATAG 59.247 63.158 20.45 0.00 46.96 2.23
5801 11572 1.767268 GGGGAGGGGTTACCGCATA 60.767 63.158 20.45 0.00 46.96 3.14
5802 11573 3.094498 GGGGAGGGGTTACCGCAT 61.094 66.667 20.45 5.73 46.96 4.73
5805 11576 4.783501 TCGGGGGAGGGGTTACCG 62.784 72.222 0.00 0.00 46.96 4.02
5806 11577 2.767073 CTCGGGGGAGGGGTTACC 60.767 72.222 0.00 0.00 40.67 2.85
5807 11578 3.477346 GCTCGGGGGAGGGGTTAC 61.477 72.222 0.00 0.00 0.00 2.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.