Multiple sequence alignment - TraesCS2B01G597900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G597900 chr2B 100.000 2549 0 0 1 2549 780977073 780979621 0.000000e+00 4708.0
1 TraesCS2B01G597900 chr2B 99.242 1979 13 2 573 2549 776222962 776224940 0.000000e+00 3570.0
2 TraesCS2B01G597900 chr2B 98.940 1982 19 2 570 2549 781094238 781096219 0.000000e+00 3542.0
3 TraesCS2B01G597900 chr5B 99.091 1980 15 3 573 2549 641128779 641126800 0.000000e+00 3554.0
4 TraesCS2B01G597900 chr6A 98.944 1988 18 3 565 2549 616131287 616133274 0.000000e+00 3552.0
5 TraesCS2B01G597900 chr6A 98.744 1991 21 4 563 2549 507719434 507721424 0.000000e+00 3535.0
6 TraesCS2B01G597900 chr3A 98.846 1993 19 4 560 2549 54951904 54953895 0.000000e+00 3550.0
7 TraesCS2B01G597900 chr7A 99.040 1979 17 2 573 2549 39015368 39017346 0.000000e+00 3548.0
8 TraesCS2B01G597900 chr7A 98.841 1984 21 2 568 2549 332474958 332472975 0.000000e+00 3535.0
9 TraesCS2B01G597900 chr3B 99.040 1979 16 3 573 2549 702857654 702855677 0.000000e+00 3546.0
10 TraesCS2B01G597900 chr1D 83.812 383 47 11 1 369 493952189 493951808 1.450000e-92 350.0
11 TraesCS2B01G597900 chr2D 83.416 404 37 15 1 374 651419025 651419428 5.220000e-92 348.0
12 TraesCS2B01G597900 chr2D 92.188 64 3 2 497 558 542835300 542835363 3.490000e-14 89.8
13 TraesCS2B01G597900 chr2A 89.170 277 28 2 1 276 776550793 776551068 6.750000e-91 344.0
14 TraesCS2B01G597900 chr2A 88.618 246 23 4 279 520 776216430 776216186 6.900000e-76 294.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G597900 chr2B 780977073 780979621 2548 False 4708 4708 100.000 1 2549 1 chr2B.!!$F2 2548
1 TraesCS2B01G597900 chr2B 776222962 776224940 1978 False 3570 3570 99.242 573 2549 1 chr2B.!!$F1 1976
2 TraesCS2B01G597900 chr2B 781094238 781096219 1981 False 3542 3542 98.940 570 2549 1 chr2B.!!$F3 1979
3 TraesCS2B01G597900 chr5B 641126800 641128779 1979 True 3554 3554 99.091 573 2549 1 chr5B.!!$R1 1976
4 TraesCS2B01G597900 chr6A 616131287 616133274 1987 False 3552 3552 98.944 565 2549 1 chr6A.!!$F2 1984
5 TraesCS2B01G597900 chr6A 507719434 507721424 1990 False 3535 3535 98.744 563 2549 1 chr6A.!!$F1 1986
6 TraesCS2B01G597900 chr3A 54951904 54953895 1991 False 3550 3550 98.846 560 2549 1 chr3A.!!$F1 1989
7 TraesCS2B01G597900 chr7A 39015368 39017346 1978 False 3548 3548 99.040 573 2549 1 chr7A.!!$F1 1976
8 TraesCS2B01G597900 chr7A 332472975 332474958 1983 True 3535 3535 98.841 568 2549 1 chr7A.!!$R1 1981
9 TraesCS2B01G597900 chr3B 702855677 702857654 1977 True 3546 3546 99.040 573 2549 1 chr3B.!!$R1 1976

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
154 155 0.100682 CCGACCAGGACGACTACATG 59.899 60.0 13.31 0.0 45.00 3.21 F
155 156 0.100682 CGACCAGGACGACTACATGG 59.899 60.0 5.25 0.0 43.56 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1199 1200 3.663995 TCAACCCATTGCTCAAACATG 57.336 42.857 0.00 0.0 35.63 3.21 R
1694 1697 9.414295 CTGCATTTCATTGATCAAAAGTTTCTA 57.586 29.630 13.09 0.0 0.00 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.895854 GCTGGAGGCGTACGTTTA 57.104 55.556 17.90 0.00 0.00 2.01
19 20 2.366833 GCTGGAGGCGTACGTTTAC 58.633 57.895 17.90 6.77 0.00 2.01
20 21 0.388907 GCTGGAGGCGTACGTTTACA 60.389 55.000 17.90 11.13 0.00 2.41
21 22 1.625616 CTGGAGGCGTACGTTTACAG 58.374 55.000 17.90 16.56 0.00 2.74
22 23 0.388907 TGGAGGCGTACGTTTACAGC 60.389 55.000 17.90 0.00 0.00 4.40
23 24 1.408474 GGAGGCGTACGTTTACAGCG 61.408 60.000 17.90 0.00 32.10 5.18
24 25 2.006288 GAGGCGTACGTTTACAGCGC 62.006 60.000 17.90 0.00 46.24 5.92
25 26 2.392976 GCGTACGTTTACAGCGCC 59.607 61.111 17.90 0.00 41.93 6.53
26 27 3.075085 GCGTACGTTTACAGCGCCC 62.075 63.158 17.90 0.00 41.93 6.13
27 28 2.781028 CGTACGTTTACAGCGCCCG 61.781 63.158 7.22 0.00 0.00 6.13
28 29 2.125991 TACGTTTACAGCGCCCGG 60.126 61.111 2.29 0.00 0.00 5.73
29 30 2.634476 TACGTTTACAGCGCCCGGA 61.634 57.895 0.73 0.00 0.00 5.14
30 31 2.817470 TACGTTTACAGCGCCCGGAC 62.817 60.000 0.73 0.00 0.00 4.79
31 32 2.357760 GTTTACAGCGCCCGGACA 60.358 61.111 0.73 0.00 0.00 4.02
32 33 1.962306 GTTTACAGCGCCCGGACAA 60.962 57.895 0.73 0.00 0.00 3.18
33 34 1.003112 TTTACAGCGCCCGGACAAT 60.003 52.632 0.73 0.00 0.00 2.71
34 35 1.302383 TTTACAGCGCCCGGACAATG 61.302 55.000 0.73 0.00 0.00 2.82
35 36 3.673956 TACAGCGCCCGGACAATGG 62.674 63.158 0.73 0.00 0.00 3.16
39 40 4.776322 CGCCCGGACAATGGCTGA 62.776 66.667 0.73 0.00 45.71 4.26
40 41 3.134127 GCCCGGACAATGGCTGAC 61.134 66.667 0.73 0.00 44.46 3.51
41 42 2.819595 CCCGGACAATGGCTGACG 60.820 66.667 0.73 0.00 0.00 4.35
42 43 2.819595 CCGGACAATGGCTGACGG 60.820 66.667 0.00 0.00 40.65 4.79
43 44 3.499737 CGGACAATGGCTGACGGC 61.500 66.667 0.00 0.00 40.90 5.68
44 45 3.499737 GGACAATGGCTGACGGCG 61.500 66.667 4.80 4.80 42.94 6.46
45 46 2.434185 GACAATGGCTGACGGCGA 60.434 61.111 16.62 0.00 42.94 5.54
46 47 2.434884 ACAATGGCTGACGGCGAG 60.435 61.111 16.62 1.58 42.94 5.03
47 48 3.869272 CAATGGCTGACGGCGAGC 61.869 66.667 16.62 13.70 42.94 5.03
48 49 4.087892 AATGGCTGACGGCGAGCT 62.088 61.111 16.62 0.00 42.94 4.09
49 50 4.827087 ATGGCTGACGGCGAGCTG 62.827 66.667 16.62 10.37 42.94 4.24
67 68 2.522680 GGGGGCAAGATGGATGGC 60.523 66.667 0.00 0.00 42.20 4.40
68 69 2.908940 GGGGCAAGATGGATGGCG 60.909 66.667 0.00 0.00 43.72 5.69
69 70 2.908940 GGGCAAGATGGATGGCGG 60.909 66.667 0.00 0.00 43.72 6.13
70 71 3.599704 GGCAAGATGGATGGCGGC 61.600 66.667 0.00 0.00 33.46 6.53
71 72 3.957535 GCAAGATGGATGGCGGCG 61.958 66.667 0.51 0.51 0.00 6.46
72 73 2.203056 CAAGATGGATGGCGGCGA 60.203 61.111 12.98 0.00 0.00 5.54
73 74 2.203070 AAGATGGATGGCGGCGAC 60.203 61.111 12.98 9.31 0.00 5.19
74 75 3.030168 AAGATGGATGGCGGCGACA 62.030 57.895 21.84 21.84 0.00 4.35
75 76 2.930385 AAGATGGATGGCGGCGACAG 62.930 60.000 24.18 0.00 0.00 3.51
76 77 4.552365 ATGGATGGCGGCGACAGG 62.552 66.667 24.18 0.00 0.00 4.00
79 80 4.899239 GATGGCGGCGACAGGGAG 62.899 72.222 24.18 0.00 0.00 4.30
82 83 4.821589 GGCGGCGACAGGGAGAAG 62.822 72.222 12.98 0.00 0.00 2.85
83 84 4.821589 GCGGCGACAGGGAGAAGG 62.822 72.222 12.98 0.00 0.00 3.46
84 85 3.382832 CGGCGACAGGGAGAAGGT 61.383 66.667 0.00 0.00 0.00 3.50
85 86 2.266055 GGCGACAGGGAGAAGGTG 59.734 66.667 0.00 0.00 0.00 4.00
86 87 2.283529 GGCGACAGGGAGAAGGTGA 61.284 63.158 0.00 0.00 0.00 4.02
87 88 1.216710 GCGACAGGGAGAAGGTGAG 59.783 63.158 0.00 0.00 0.00 3.51
88 89 1.893786 CGACAGGGAGAAGGTGAGG 59.106 63.158 0.00 0.00 0.00 3.86
89 90 1.608717 CGACAGGGAGAAGGTGAGGG 61.609 65.000 0.00 0.00 0.00 4.30
90 91 0.252284 GACAGGGAGAAGGTGAGGGA 60.252 60.000 0.00 0.00 0.00 4.20
91 92 0.252467 ACAGGGAGAAGGTGAGGGAG 60.252 60.000 0.00 0.00 0.00 4.30
92 93 0.980231 CAGGGAGAAGGTGAGGGAGG 60.980 65.000 0.00 0.00 0.00 4.30
93 94 2.371259 GGGAGAAGGTGAGGGAGGC 61.371 68.421 0.00 0.00 0.00 4.70
94 95 2.726351 GGAGAAGGTGAGGGAGGCG 61.726 68.421 0.00 0.00 0.00 5.52
95 96 2.685380 AGAAGGTGAGGGAGGCGG 60.685 66.667 0.00 0.00 0.00 6.13
96 97 4.475135 GAAGGTGAGGGAGGCGGC 62.475 72.222 0.00 0.00 0.00 6.53
127 128 4.580835 GAGTGGCTCGAGGTCAAC 57.419 61.111 15.58 1.74 0.00 3.18
128 129 1.079750 GAGTGGCTCGAGGTCAACC 60.080 63.158 15.58 6.83 0.00 3.77
129 130 2.047179 GTGGCTCGAGGTCAACCC 60.047 66.667 15.58 6.05 36.42 4.11
130 131 3.691342 TGGCTCGAGGTCAACCCG 61.691 66.667 15.58 0.00 38.74 5.28
131 132 4.452733 GGCTCGAGGTCAACCCGG 62.453 72.222 15.58 0.00 38.74 5.73
132 133 3.379445 GCTCGAGGTCAACCCGGA 61.379 66.667 15.58 1.26 38.74 5.14
133 134 2.572284 CTCGAGGTCAACCCGGAC 59.428 66.667 0.73 0.00 38.74 4.79
134 135 3.338126 CTCGAGGTCAACCCGGACG 62.338 68.421 0.73 0.00 38.70 4.79
136 137 4.754667 GAGGTCAACCCGGACGCC 62.755 72.222 0.73 0.00 38.70 5.68
148 149 4.773117 GACGCCGACCAGGACGAC 62.773 72.222 13.31 0.00 45.00 4.34
150 151 3.129502 CGCCGACCAGGACGACTA 61.130 66.667 13.31 0.00 45.00 2.59
151 152 2.488820 GCCGACCAGGACGACTAC 59.511 66.667 13.31 0.00 45.00 2.73
152 153 2.338015 GCCGACCAGGACGACTACA 61.338 63.158 13.31 0.00 45.00 2.74
153 154 1.664321 GCCGACCAGGACGACTACAT 61.664 60.000 13.31 0.00 45.00 2.29
154 155 0.100682 CCGACCAGGACGACTACATG 59.899 60.000 13.31 0.00 45.00 3.21
155 156 0.100682 CGACCAGGACGACTACATGG 59.899 60.000 5.25 0.00 43.56 3.66
156 157 1.471119 GACCAGGACGACTACATGGA 58.529 55.000 0.00 0.00 40.97 3.41
157 158 1.822990 GACCAGGACGACTACATGGAA 59.177 52.381 0.00 0.00 40.97 3.53
158 159 2.232941 GACCAGGACGACTACATGGAAA 59.767 50.000 0.00 0.00 40.97 3.13
159 160 2.635915 ACCAGGACGACTACATGGAAAA 59.364 45.455 0.00 0.00 40.97 2.29
160 161 3.262420 CCAGGACGACTACATGGAAAAG 58.738 50.000 0.00 0.00 40.97 2.27
161 162 2.673368 CAGGACGACTACATGGAAAAGC 59.327 50.000 0.00 0.00 0.00 3.51
162 163 2.567615 AGGACGACTACATGGAAAAGCT 59.432 45.455 0.00 0.00 0.00 3.74
163 164 2.930682 GGACGACTACATGGAAAAGCTC 59.069 50.000 0.00 0.00 0.00 4.09
164 165 3.585862 GACGACTACATGGAAAAGCTCA 58.414 45.455 0.00 0.00 0.00 4.26
165 166 3.994392 GACGACTACATGGAAAAGCTCAA 59.006 43.478 0.00 0.00 0.00 3.02
166 167 3.997021 ACGACTACATGGAAAAGCTCAAG 59.003 43.478 0.00 0.00 0.00 3.02
167 168 3.372206 CGACTACATGGAAAAGCTCAAGG 59.628 47.826 0.00 0.00 0.00 3.61
168 169 4.579869 GACTACATGGAAAAGCTCAAGGA 58.420 43.478 0.00 0.00 0.00 3.36
169 170 4.583871 ACTACATGGAAAAGCTCAAGGAG 58.416 43.478 0.00 0.00 0.00 3.69
182 183 4.751767 CTCAAGGAGCTAGAGGATGTTT 57.248 45.455 0.00 0.00 0.00 2.83
183 184 4.440880 CTCAAGGAGCTAGAGGATGTTTG 58.559 47.826 0.00 0.00 0.00 2.93
184 185 3.840666 TCAAGGAGCTAGAGGATGTTTGT 59.159 43.478 0.00 0.00 0.00 2.83
185 186 5.023452 TCAAGGAGCTAGAGGATGTTTGTA 58.977 41.667 0.00 0.00 0.00 2.41
186 187 5.127845 TCAAGGAGCTAGAGGATGTTTGTAG 59.872 44.000 0.00 0.00 0.00 2.74
187 188 3.386402 AGGAGCTAGAGGATGTTTGTAGC 59.614 47.826 0.00 0.00 37.05 3.58
188 189 3.493524 GGAGCTAGAGGATGTTTGTAGCC 60.494 52.174 0.00 0.00 37.43 3.93
189 190 2.436173 AGCTAGAGGATGTTTGTAGCCC 59.564 50.000 0.00 0.00 37.43 5.19
190 191 2.485657 GCTAGAGGATGTTTGTAGCCCC 60.486 54.545 0.00 0.00 31.71 5.80
191 192 0.541863 AGAGGATGTTTGTAGCCCCG 59.458 55.000 0.00 0.00 0.00 5.73
192 193 1.077716 AGGATGTTTGTAGCCCCGC 60.078 57.895 0.00 0.00 0.00 6.13
193 194 2.119029 GGATGTTTGTAGCCCCGCC 61.119 63.158 0.00 0.00 0.00 6.13
194 195 1.077716 GATGTTTGTAGCCCCGCCT 60.078 57.895 0.00 0.00 0.00 5.52
195 196 0.679960 GATGTTTGTAGCCCCGCCTT 60.680 55.000 0.00 0.00 0.00 4.35
196 197 0.679960 ATGTTTGTAGCCCCGCCTTC 60.680 55.000 0.00 0.00 0.00 3.46
197 198 2.046700 TTTGTAGCCCCGCCTTCG 60.047 61.111 0.00 0.00 0.00 3.79
198 199 4.770874 TTGTAGCCCCGCCTTCGC 62.771 66.667 0.00 0.00 0.00 4.70
219 220 2.807895 CGCGTACGGGAACACTGG 60.808 66.667 26.40 0.00 34.97 4.00
220 221 3.116531 GCGTACGGGAACACTGGC 61.117 66.667 18.39 0.00 0.00 4.85
221 222 2.807895 CGTACGGGAACACTGGCG 60.808 66.667 7.57 0.00 0.00 5.69
222 223 2.433664 GTACGGGAACACTGGCGG 60.434 66.667 0.00 0.00 0.00 6.13
223 224 2.918802 TACGGGAACACTGGCGGT 60.919 61.111 0.00 0.00 0.00 5.68
253 254 3.148279 GCCACCGAGGAGGACGAT 61.148 66.667 9.83 0.00 45.00 3.73
254 255 2.808315 CCACCGAGGAGGACGATG 59.192 66.667 0.00 0.00 45.00 3.84
255 256 1.753078 CCACCGAGGAGGACGATGA 60.753 63.158 0.00 0.00 45.00 2.92
256 257 1.433879 CACCGAGGAGGACGATGAC 59.566 63.158 0.00 0.00 45.00 3.06
257 258 1.753463 ACCGAGGAGGACGATGACC 60.753 63.158 0.00 0.00 45.00 4.02
258 259 1.753078 CCGAGGAGGACGATGACCA 60.753 63.158 0.00 0.00 45.00 4.02
259 260 1.433879 CGAGGAGGACGATGACCAC 59.566 63.158 0.00 0.00 0.00 4.16
260 261 1.313091 CGAGGAGGACGATGACCACA 61.313 60.000 0.00 0.00 0.00 4.17
261 262 0.895530 GAGGAGGACGATGACCACAA 59.104 55.000 0.00 0.00 0.00 3.33
262 263 0.608640 AGGAGGACGATGACCACAAC 59.391 55.000 0.00 0.00 0.00 3.32
263 264 0.736325 GGAGGACGATGACCACAACG 60.736 60.000 0.00 0.00 45.33 4.10
264 265 0.242825 GAGGACGATGACCACAACGA 59.757 55.000 6.86 0.00 43.20 3.85
265 266 0.243907 AGGACGATGACCACAACGAG 59.756 55.000 6.86 0.00 43.20 4.18
266 267 1.352156 GGACGATGACCACAACGAGC 61.352 60.000 6.86 0.00 43.20 5.03
267 268 0.388649 GACGATGACCACAACGAGCT 60.389 55.000 6.86 0.00 43.20 4.09
268 269 0.388649 ACGATGACCACAACGAGCTC 60.389 55.000 2.73 2.73 43.20 4.09
269 270 0.109086 CGATGACCACAACGAGCTCT 60.109 55.000 12.85 0.00 43.20 4.09
270 271 1.132453 CGATGACCACAACGAGCTCTA 59.868 52.381 12.85 0.00 43.20 2.43
271 272 2.415491 CGATGACCACAACGAGCTCTAA 60.415 50.000 12.85 0.00 43.20 2.10
272 273 2.724977 TGACCACAACGAGCTCTAAG 57.275 50.000 12.85 3.39 0.00 2.18
273 274 2.235891 TGACCACAACGAGCTCTAAGA 58.764 47.619 12.85 0.00 0.00 2.10
274 275 2.826128 TGACCACAACGAGCTCTAAGAT 59.174 45.455 12.85 0.00 0.00 2.40
275 276 3.258372 TGACCACAACGAGCTCTAAGATT 59.742 43.478 12.85 0.00 0.00 2.40
276 277 4.246458 GACCACAACGAGCTCTAAGATTT 58.754 43.478 12.85 0.00 0.00 2.17
277 278 4.642429 ACCACAACGAGCTCTAAGATTTT 58.358 39.130 12.85 0.00 0.00 1.82
278 279 5.063880 ACCACAACGAGCTCTAAGATTTTT 58.936 37.500 12.85 0.00 0.00 1.94
313 314 9.881529 GGAGTATAAGATTAGACTTGAACTACG 57.118 37.037 1.73 0.00 35.52 3.51
321 322 9.447157 AGATTAGACTTGAACTACGTACTTACT 57.553 33.333 0.00 0.00 0.00 2.24
322 323 9.488124 GATTAGACTTGAACTACGTACTTACTG 57.512 37.037 0.00 0.00 0.00 2.74
323 324 8.607441 TTAGACTTGAACTACGTACTTACTGA 57.393 34.615 0.00 0.00 0.00 3.41
324 325 7.684937 AGACTTGAACTACGTACTTACTGAT 57.315 36.000 0.00 0.00 0.00 2.90
325 326 7.750769 AGACTTGAACTACGTACTTACTGATC 58.249 38.462 0.00 0.00 0.00 2.92
326 327 7.389884 AGACTTGAACTACGTACTTACTGATCA 59.610 37.037 0.00 0.00 0.00 2.92
327 328 7.879070 ACTTGAACTACGTACTTACTGATCAA 58.121 34.615 0.00 0.00 0.00 2.57
328 329 7.806960 ACTTGAACTACGTACTTACTGATCAAC 59.193 37.037 0.00 0.00 0.00 3.18
329 330 6.309436 TGAACTACGTACTTACTGATCAACG 58.691 40.000 12.52 12.52 36.48 4.10
330 331 5.227238 ACTACGTACTTACTGATCAACGG 57.773 43.478 17.04 5.53 34.81 4.44
331 332 2.872370 ACGTACTTACTGATCAACGGC 58.128 47.619 17.04 0.00 34.81 5.68
332 333 2.490903 ACGTACTTACTGATCAACGGCT 59.509 45.455 17.04 0.00 34.81 5.52
333 334 3.691118 ACGTACTTACTGATCAACGGCTA 59.309 43.478 17.04 0.00 34.81 3.93
334 335 4.156556 ACGTACTTACTGATCAACGGCTAA 59.843 41.667 17.04 0.22 34.81 3.09
335 336 4.733887 CGTACTTACTGATCAACGGCTAAG 59.266 45.833 7.34 5.32 0.00 2.18
336 337 4.124851 ACTTACTGATCAACGGCTAAGG 57.875 45.455 0.00 0.00 0.00 2.69
337 338 3.514309 ACTTACTGATCAACGGCTAAGGT 59.486 43.478 0.00 0.00 0.00 3.50
338 339 2.674796 ACTGATCAACGGCTAAGGTC 57.325 50.000 0.00 0.00 0.00 3.85
339 340 1.899814 ACTGATCAACGGCTAAGGTCA 59.100 47.619 0.00 0.00 0.00 4.02
340 341 2.501723 ACTGATCAACGGCTAAGGTCAT 59.498 45.455 0.00 0.00 0.00 3.06
341 342 3.704566 ACTGATCAACGGCTAAGGTCATA 59.295 43.478 0.00 0.00 0.00 2.15
342 343 4.161565 ACTGATCAACGGCTAAGGTCATAA 59.838 41.667 0.00 0.00 0.00 1.90
343 344 5.092554 TGATCAACGGCTAAGGTCATAAA 57.907 39.130 0.00 0.00 0.00 1.40
344 345 5.680619 TGATCAACGGCTAAGGTCATAAAT 58.319 37.500 0.00 0.00 0.00 1.40
345 346 5.758296 TGATCAACGGCTAAGGTCATAAATC 59.242 40.000 0.00 0.00 0.00 2.17
346 347 5.353394 TCAACGGCTAAGGTCATAAATCT 57.647 39.130 0.00 0.00 0.00 2.40
347 348 5.741011 TCAACGGCTAAGGTCATAAATCTT 58.259 37.500 0.00 0.00 0.00 2.40
348 349 6.177610 TCAACGGCTAAGGTCATAAATCTTT 58.822 36.000 0.00 0.00 0.00 2.52
349 350 6.657541 TCAACGGCTAAGGTCATAAATCTTTT 59.342 34.615 0.00 0.00 0.00 2.27
350 351 6.436843 ACGGCTAAGGTCATAAATCTTTTG 57.563 37.500 0.00 0.00 0.00 2.44
351 352 6.177610 ACGGCTAAGGTCATAAATCTTTTGA 58.822 36.000 0.00 0.00 0.00 2.69
352 353 6.828785 ACGGCTAAGGTCATAAATCTTTTGAT 59.171 34.615 0.00 0.00 41.73 2.57
368 369 9.603921 AATCTTTTGATTGTTTGTCTGTTTGAT 57.396 25.926 0.00 0.00 46.45 2.57
369 370 9.603921 ATCTTTTGATTGTTTGTCTGTTTGATT 57.396 25.926 0.00 0.00 35.18 2.57
407 408 9.884636 ATATACACTGTACATTGCTTAAGTTCA 57.115 29.630 12.73 0.00 0.00 3.18
408 409 8.792830 ATACACTGTACATTGCTTAAGTTCAT 57.207 30.769 12.73 0.00 0.00 2.57
409 410 6.902341 ACACTGTACATTGCTTAAGTTCATG 58.098 36.000 12.73 6.72 0.00 3.07
410 411 6.486657 ACACTGTACATTGCTTAAGTTCATGT 59.513 34.615 12.73 15.95 0.00 3.21
411 412 7.013274 ACACTGTACATTGCTTAAGTTCATGTT 59.987 33.333 12.73 6.42 0.00 2.71
412 413 7.535258 CACTGTACATTGCTTAAGTTCATGTTC 59.465 37.037 16.54 13.44 0.00 3.18
413 414 7.228507 ACTGTACATTGCTTAAGTTCATGTTCA 59.771 33.333 16.54 16.00 0.00 3.18
414 415 8.109705 TGTACATTGCTTAAGTTCATGTTCAT 57.890 30.769 16.54 1.58 0.00 2.57
415 416 9.225436 TGTACATTGCTTAAGTTCATGTTCATA 57.775 29.630 16.54 2.61 0.00 2.15
428 429 9.439500 AGTTCATGTTCATATTTGAATTTTGGG 57.561 29.630 1.79 0.00 43.49 4.12
429 430 9.434420 GTTCATGTTCATATTTGAATTTTGGGA 57.566 29.630 1.79 0.00 43.49 4.37
434 435 9.487790 TGTTCATATTTGAATTTTGGGAAAGTC 57.512 29.630 1.79 0.00 43.49 3.01
435 436 9.710900 GTTCATATTTGAATTTTGGGAAAGTCT 57.289 29.630 1.79 0.00 43.49 3.24
437 438 9.709495 TCATATTTGAATTTTGGGAAAGTCTTG 57.291 29.630 1.84 0.00 39.79 3.02
438 439 9.492973 CATATTTGAATTTTGGGAAAGTCTTGT 57.507 29.630 1.84 0.00 39.79 3.16
440 441 8.887036 ATTTGAATTTTGGGAAAGTCTTGTAC 57.113 30.769 1.84 0.00 39.79 2.90
441 442 7.654022 TTGAATTTTGGGAAAGTCTTGTACT 57.346 32.000 0.00 0.00 39.79 2.73
442 443 7.272037 TGAATTTTGGGAAAGTCTTGTACTC 57.728 36.000 0.00 0.00 39.79 2.59
443 444 7.060421 TGAATTTTGGGAAAGTCTTGTACTCT 58.940 34.615 0.00 0.00 39.79 3.24
444 445 7.228706 TGAATTTTGGGAAAGTCTTGTACTCTC 59.771 37.037 0.00 0.00 39.79 3.20
445 446 5.888982 TTTGGGAAAGTCTTGTACTCTCT 57.111 39.130 0.00 0.00 37.50 3.10
446 447 5.470047 TTGGGAAAGTCTTGTACTCTCTC 57.530 43.478 0.00 0.00 37.50 3.20
447 448 3.506455 TGGGAAAGTCTTGTACTCTCTCG 59.494 47.826 0.00 0.00 37.50 4.04
448 449 3.119424 GGGAAAGTCTTGTACTCTCTCGG 60.119 52.174 0.00 0.00 37.50 4.63
449 450 3.757493 GGAAAGTCTTGTACTCTCTCGGA 59.243 47.826 0.00 0.00 37.50 4.55
450 451 4.399934 GGAAAGTCTTGTACTCTCTCGGAT 59.600 45.833 0.00 0.00 37.50 4.18
451 452 5.449451 GGAAAGTCTTGTACTCTCTCGGATC 60.449 48.000 0.00 0.00 37.50 3.36
452 453 3.547746 AGTCTTGTACTCTCTCGGATCC 58.452 50.000 0.00 0.00 30.33 3.36
453 454 3.054287 AGTCTTGTACTCTCTCGGATCCA 60.054 47.826 13.41 0.00 30.33 3.41
454 455 3.886505 GTCTTGTACTCTCTCGGATCCAT 59.113 47.826 13.41 0.00 0.00 3.41
455 456 5.064558 GTCTTGTACTCTCTCGGATCCATA 58.935 45.833 13.41 0.00 0.00 2.74
456 457 5.708230 GTCTTGTACTCTCTCGGATCCATAT 59.292 44.000 13.41 0.00 0.00 1.78
457 458 6.207810 GTCTTGTACTCTCTCGGATCCATATT 59.792 42.308 13.41 0.00 0.00 1.28
458 459 7.390996 GTCTTGTACTCTCTCGGATCCATATTA 59.609 40.741 13.41 0.00 0.00 0.98
459 460 7.608376 TCTTGTACTCTCTCGGATCCATATTAG 59.392 40.741 13.41 5.75 0.00 1.73
460 461 6.780901 TGTACTCTCTCGGATCCATATTAGT 58.219 40.000 13.41 11.35 0.00 2.24
461 462 7.232188 TGTACTCTCTCGGATCCATATTAGTT 58.768 38.462 13.41 0.00 0.00 2.24
462 463 8.380867 TGTACTCTCTCGGATCCATATTAGTTA 58.619 37.037 13.41 0.38 0.00 2.24
463 464 9.398538 GTACTCTCTCGGATCCATATTAGTTAT 57.601 37.037 13.41 0.00 0.00 1.89
464 465 8.514330 ACTCTCTCGGATCCATATTAGTTATC 57.486 38.462 13.41 0.00 0.00 1.75
465 466 7.281324 ACTCTCTCGGATCCATATTAGTTATCG 59.719 40.741 13.41 0.00 0.00 2.92
466 467 6.038382 TCTCTCGGATCCATATTAGTTATCGC 59.962 42.308 13.41 0.00 0.00 4.58
467 468 5.886474 TCTCGGATCCATATTAGTTATCGCT 59.114 40.000 13.41 0.00 0.00 4.93
468 469 5.891451 TCGGATCCATATTAGTTATCGCTG 58.109 41.667 13.41 0.00 0.00 5.18
469 470 5.650703 TCGGATCCATATTAGTTATCGCTGA 59.349 40.000 13.41 0.00 0.00 4.26
470 471 6.321435 TCGGATCCATATTAGTTATCGCTGAT 59.679 38.462 13.41 0.00 0.00 2.90
471 472 6.980978 CGGATCCATATTAGTTATCGCTGATT 59.019 38.462 13.41 0.00 0.00 2.57
472 473 7.492669 CGGATCCATATTAGTTATCGCTGATTT 59.507 37.037 13.41 0.00 0.00 2.17
473 474 9.817809 GGATCCATATTAGTTATCGCTGATTTA 57.182 33.333 6.95 0.00 0.00 1.40
528 529 3.788116 TCCAGTAGGAATAGGGGTGAA 57.212 47.619 0.00 0.00 42.23 3.18
529 530 4.083080 TCCAGTAGGAATAGGGGTGAAA 57.917 45.455 0.00 0.00 42.23 2.69
530 531 4.641868 TCCAGTAGGAATAGGGGTGAAAT 58.358 43.478 0.00 0.00 42.23 2.17
531 532 5.795079 TCCAGTAGGAATAGGGGTGAAATA 58.205 41.667 0.00 0.00 42.23 1.40
532 533 6.214278 TCCAGTAGGAATAGGGGTGAAATAA 58.786 40.000 0.00 0.00 42.23 1.40
533 534 6.679303 TCCAGTAGGAATAGGGGTGAAATAAA 59.321 38.462 0.00 0.00 42.23 1.40
534 535 6.998673 CCAGTAGGAATAGGGGTGAAATAAAG 59.001 42.308 0.00 0.00 36.89 1.85
535 536 7.366551 CCAGTAGGAATAGGGGTGAAATAAAGT 60.367 40.741 0.00 0.00 36.89 2.66
536 537 7.715686 CAGTAGGAATAGGGGTGAAATAAAGTC 59.284 40.741 0.00 0.00 0.00 3.01
537 538 6.014771 AGGAATAGGGGTGAAATAAAGTCC 57.985 41.667 0.00 0.00 0.00 3.85
538 539 5.103643 AGGAATAGGGGTGAAATAAAGTCCC 60.104 44.000 0.00 0.00 37.59 4.46
539 540 2.801077 AGGGGTGAAATAAAGTCCCG 57.199 50.000 0.00 0.00 39.31 5.14
540 541 2.271777 AGGGGTGAAATAAAGTCCCGA 58.728 47.619 0.00 0.00 39.31 5.14
541 542 2.238898 AGGGGTGAAATAAAGTCCCGAG 59.761 50.000 0.00 0.00 39.31 4.63
542 543 2.237893 GGGGTGAAATAAAGTCCCGAGA 59.762 50.000 0.00 0.00 39.06 4.04
543 544 3.307904 GGGGTGAAATAAAGTCCCGAGAA 60.308 47.826 0.00 0.00 39.06 2.87
544 545 4.524053 GGGTGAAATAAAGTCCCGAGAAT 58.476 43.478 0.00 0.00 0.00 2.40
545 546 4.948004 GGGTGAAATAAAGTCCCGAGAATT 59.052 41.667 0.00 0.00 0.00 2.17
546 547 5.417894 GGGTGAAATAAAGTCCCGAGAATTT 59.582 40.000 0.00 0.00 42.56 1.82
547 548 6.071560 GGGTGAAATAAAGTCCCGAGAATTTT 60.072 38.462 0.00 0.00 40.54 1.82
548 549 7.027760 GGTGAAATAAAGTCCCGAGAATTTTC 58.972 38.462 0.00 0.00 40.54 2.29
549 550 7.094334 GGTGAAATAAAGTCCCGAGAATTTTCT 60.094 37.037 0.00 0.00 40.54 2.52
550 551 7.750903 GTGAAATAAAGTCCCGAGAATTTTCTG 59.249 37.037 0.00 0.00 40.54 3.02
551 552 7.447238 TGAAATAAAGTCCCGAGAATTTTCTGT 59.553 33.333 0.00 0.00 40.54 3.41
552 553 6.743575 ATAAAGTCCCGAGAATTTTCTGTG 57.256 37.500 0.00 0.00 40.54 3.66
553 554 4.351874 AAGTCCCGAGAATTTTCTGTGA 57.648 40.909 0.00 0.00 37.73 3.58
554 555 4.351874 AGTCCCGAGAATTTTCTGTGAA 57.648 40.909 0.00 0.00 37.73 3.18
555 556 4.911390 AGTCCCGAGAATTTTCTGTGAAT 58.089 39.130 0.00 0.00 37.73 2.57
556 557 4.938226 AGTCCCGAGAATTTTCTGTGAATC 59.062 41.667 0.00 0.00 37.73 2.52
557 558 4.695455 GTCCCGAGAATTTTCTGTGAATCA 59.305 41.667 0.00 0.00 37.73 2.57
558 559 4.695455 TCCCGAGAATTTTCTGTGAATCAC 59.305 41.667 6.41 6.41 37.73 3.06
559 560 4.697352 CCCGAGAATTTTCTGTGAATCACT 59.303 41.667 14.97 0.00 37.73 3.41
560 561 5.182001 CCCGAGAATTTTCTGTGAATCACTT 59.818 40.000 14.97 0.00 37.73 3.16
561 562 6.310197 CCGAGAATTTTCTGTGAATCACTTC 58.690 40.000 14.97 8.56 37.73 3.01
562 563 6.073058 CCGAGAATTTTCTGTGAATCACTTCA 60.073 38.462 14.97 0.00 37.03 3.02
563 564 7.361542 CCGAGAATTTTCTGTGAATCACTTCAT 60.362 37.037 14.97 0.10 39.48 2.57
564 565 8.019669 CGAGAATTTTCTGTGAATCACTTCATT 58.980 33.333 14.97 5.89 39.48 2.57
565 566 9.688592 GAGAATTTTCTGTGAATCACTTCATTT 57.311 29.630 14.97 1.93 39.48 2.32
566 567 9.688592 AGAATTTTCTGTGAATCACTTCATTTC 57.311 29.630 14.97 10.17 43.08 2.17
599 600 3.806949 TTATCCTTTTGCCCTCAGTGT 57.193 42.857 0.00 0.00 0.00 3.55
1042 1043 4.218578 CCTCGCGGATGCAGAGCT 62.219 66.667 6.13 0.00 42.97 4.09
1199 1200 1.131826 CACCATTTTCGTCGTCGGC 59.868 57.895 1.55 0.00 37.69 5.54
2182 2186 1.609794 GGACTCGAACCCAGGACCT 60.610 63.158 0.00 0.00 0.00 3.85
2513 2519 7.893824 TCATGACTTTTTGTTTGAATGAAACG 58.106 30.769 0.00 0.00 46.15 3.60
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.388907 TGTAAACGTACGCCTCCAGC 60.389 55.000 16.72 0.09 38.52 4.85
4 5 1.408474 CGCTGTAAACGTACGCCTCC 61.408 60.000 16.72 1.74 32.40 4.30
5 6 1.986154 CGCTGTAAACGTACGCCTC 59.014 57.895 16.72 4.34 32.40 4.70
6 7 2.090524 GCGCTGTAAACGTACGCCT 61.091 57.895 16.72 4.94 43.58 5.52
9 10 2.781028 CGGGCGCTGTAAACGTACG 61.781 63.158 15.01 15.01 32.40 3.67
10 11 2.447070 CCGGGCGCTGTAAACGTAC 61.447 63.158 7.64 0.00 0.00 3.67
11 12 2.125991 CCGGGCGCTGTAAACGTA 60.126 61.111 7.64 0.00 0.00 3.57
12 13 3.993584 TCCGGGCGCTGTAAACGT 61.994 61.111 7.64 0.00 0.00 3.99
13 14 3.484547 GTCCGGGCGCTGTAAACG 61.485 66.667 7.64 2.78 0.00 3.60
14 15 1.303091 ATTGTCCGGGCGCTGTAAAC 61.303 55.000 7.64 0.16 0.00 2.01
15 16 1.003112 ATTGTCCGGGCGCTGTAAA 60.003 52.632 7.64 0.00 0.00 2.01
16 17 1.743623 CATTGTCCGGGCGCTGTAA 60.744 57.895 7.64 0.00 0.00 2.41
17 18 2.125310 CATTGTCCGGGCGCTGTA 60.125 61.111 7.64 0.00 0.00 2.74
24 25 2.819595 CGTCAGCCATTGTCCGGG 60.820 66.667 0.00 0.00 0.00 5.73
25 26 2.819595 CCGTCAGCCATTGTCCGG 60.820 66.667 0.00 0.00 36.56 5.14
26 27 3.499737 GCCGTCAGCCATTGTCCG 61.500 66.667 0.00 0.00 34.35 4.79
27 28 3.499737 CGCCGTCAGCCATTGTCC 61.500 66.667 0.00 0.00 38.78 4.02
28 29 2.434185 TCGCCGTCAGCCATTGTC 60.434 61.111 0.00 0.00 38.78 3.18
29 30 2.434884 CTCGCCGTCAGCCATTGT 60.435 61.111 0.00 0.00 38.78 2.71
30 31 3.869272 GCTCGCCGTCAGCCATTG 61.869 66.667 0.00 0.00 38.78 2.82
31 32 4.087892 AGCTCGCCGTCAGCCATT 62.088 61.111 0.00 0.00 37.63 3.16
32 33 4.827087 CAGCTCGCCGTCAGCCAT 62.827 66.667 0.00 0.00 37.63 4.40
50 51 2.522680 GCCATCCATCTTGCCCCC 60.523 66.667 0.00 0.00 0.00 5.40
51 52 2.908940 CGCCATCCATCTTGCCCC 60.909 66.667 0.00 0.00 0.00 5.80
52 53 2.908940 CCGCCATCCATCTTGCCC 60.909 66.667 0.00 0.00 0.00 5.36
53 54 3.599704 GCCGCCATCCATCTTGCC 61.600 66.667 0.00 0.00 0.00 4.52
54 55 3.957535 CGCCGCCATCCATCTTGC 61.958 66.667 0.00 0.00 0.00 4.01
55 56 2.203056 TCGCCGCCATCCATCTTG 60.203 61.111 0.00 0.00 0.00 3.02
56 57 2.203070 GTCGCCGCCATCCATCTT 60.203 61.111 0.00 0.00 0.00 2.40
57 58 3.451556 CTGTCGCCGCCATCCATCT 62.452 63.158 0.00 0.00 0.00 2.90
58 59 2.969238 CTGTCGCCGCCATCCATC 60.969 66.667 0.00 0.00 0.00 3.51
59 60 4.552365 CCTGTCGCCGCCATCCAT 62.552 66.667 0.00 0.00 0.00 3.41
62 63 4.899239 CTCCCTGTCGCCGCCATC 62.899 72.222 0.00 0.00 0.00 3.51
65 66 4.821589 CTTCTCCCTGTCGCCGCC 62.822 72.222 0.00 0.00 0.00 6.13
66 67 4.821589 CCTTCTCCCTGTCGCCGC 62.822 72.222 0.00 0.00 0.00 6.53
67 68 3.382832 ACCTTCTCCCTGTCGCCG 61.383 66.667 0.00 0.00 0.00 6.46
68 69 2.232298 CTCACCTTCTCCCTGTCGCC 62.232 65.000 0.00 0.00 0.00 5.54
69 70 1.216710 CTCACCTTCTCCCTGTCGC 59.783 63.158 0.00 0.00 0.00 5.19
70 71 1.608717 CCCTCACCTTCTCCCTGTCG 61.609 65.000 0.00 0.00 0.00 4.35
71 72 0.252284 TCCCTCACCTTCTCCCTGTC 60.252 60.000 0.00 0.00 0.00 3.51
72 73 0.252467 CTCCCTCACCTTCTCCCTGT 60.252 60.000 0.00 0.00 0.00 4.00
73 74 0.980231 CCTCCCTCACCTTCTCCCTG 60.980 65.000 0.00 0.00 0.00 4.45
74 75 1.394151 CCTCCCTCACCTTCTCCCT 59.606 63.158 0.00 0.00 0.00 4.20
75 76 2.371259 GCCTCCCTCACCTTCTCCC 61.371 68.421 0.00 0.00 0.00 4.30
76 77 2.726351 CGCCTCCCTCACCTTCTCC 61.726 68.421 0.00 0.00 0.00 3.71
77 78 2.726351 CCGCCTCCCTCACCTTCTC 61.726 68.421 0.00 0.00 0.00 2.87
78 79 2.685380 CCGCCTCCCTCACCTTCT 60.685 66.667 0.00 0.00 0.00 2.85
79 80 4.475135 GCCGCCTCCCTCACCTTC 62.475 72.222 0.00 0.00 0.00 3.46
110 111 1.079750 GGTTGACCTCGAGCCACTC 60.080 63.158 6.99 0.00 0.00 3.51
111 112 2.584391 GGGTTGACCTCGAGCCACT 61.584 63.158 6.99 0.00 45.14 4.00
112 113 2.047179 GGGTTGACCTCGAGCCAC 60.047 66.667 6.99 0.77 45.14 5.01
113 114 3.691342 CGGGTTGACCTCGAGCCA 61.691 66.667 6.99 4.16 45.90 4.75
114 115 4.452733 CCGGGTTGACCTCGAGCC 62.453 72.222 6.99 1.75 42.96 4.70
115 116 3.379445 TCCGGGTTGACCTCGAGC 61.379 66.667 6.99 0.00 36.97 5.03
116 117 2.572284 GTCCGGGTTGACCTCGAG 59.428 66.667 5.13 5.13 36.97 4.04
117 118 3.367743 CGTCCGGGTTGACCTCGA 61.368 66.667 0.00 0.00 36.97 4.04
119 120 4.754667 GGCGTCCGGGTTGACCTC 62.755 72.222 0.00 0.00 36.97 3.85
131 132 4.773117 GTCGTCCTGGTCGGCGTC 62.773 72.222 13.11 0.00 35.02 5.19
132 133 3.907260 TAGTCGTCCTGGTCGGCGT 62.907 63.158 11.94 4.16 37.99 5.68
133 134 3.129502 TAGTCGTCCTGGTCGGCG 61.130 66.667 11.94 0.00 37.99 6.46
134 135 1.664321 ATGTAGTCGTCCTGGTCGGC 61.664 60.000 9.90 9.90 0.00 5.54
135 136 0.100682 CATGTAGTCGTCCTGGTCGG 59.899 60.000 13.11 0.00 0.00 4.79
136 137 0.100682 CCATGTAGTCGTCCTGGTCG 59.899 60.000 7.02 7.02 0.00 4.79
137 138 1.471119 TCCATGTAGTCGTCCTGGTC 58.529 55.000 0.00 0.00 0.00 4.02
138 139 1.933021 TTCCATGTAGTCGTCCTGGT 58.067 50.000 0.00 0.00 0.00 4.00
139 140 3.262420 CTTTTCCATGTAGTCGTCCTGG 58.738 50.000 0.00 0.00 0.00 4.45
140 141 2.673368 GCTTTTCCATGTAGTCGTCCTG 59.327 50.000 0.00 0.00 0.00 3.86
141 142 2.567615 AGCTTTTCCATGTAGTCGTCCT 59.432 45.455 0.00 0.00 0.00 3.85
142 143 2.930682 GAGCTTTTCCATGTAGTCGTCC 59.069 50.000 0.00 0.00 0.00 4.79
143 144 3.585862 TGAGCTTTTCCATGTAGTCGTC 58.414 45.455 0.00 0.00 0.00 4.20
144 145 3.678056 TGAGCTTTTCCATGTAGTCGT 57.322 42.857 0.00 0.00 0.00 4.34
145 146 3.372206 CCTTGAGCTTTTCCATGTAGTCG 59.628 47.826 0.00 0.00 0.00 4.18
146 147 4.579869 TCCTTGAGCTTTTCCATGTAGTC 58.420 43.478 0.00 0.00 0.00 2.59
147 148 4.583871 CTCCTTGAGCTTTTCCATGTAGT 58.416 43.478 0.00 0.00 0.00 2.73
161 162 4.081198 ACAAACATCCTCTAGCTCCTTGAG 60.081 45.833 0.00 0.00 34.18 3.02
162 163 3.840666 ACAAACATCCTCTAGCTCCTTGA 59.159 43.478 0.00 0.00 0.00 3.02
163 164 4.213564 ACAAACATCCTCTAGCTCCTTG 57.786 45.455 0.00 0.00 0.00 3.61
164 165 4.141824 GCTACAAACATCCTCTAGCTCCTT 60.142 45.833 0.00 0.00 0.00 3.36
165 166 3.386402 GCTACAAACATCCTCTAGCTCCT 59.614 47.826 0.00 0.00 0.00 3.69
166 167 3.493524 GGCTACAAACATCCTCTAGCTCC 60.494 52.174 0.00 0.00 32.12 4.70
167 168 3.493524 GGGCTACAAACATCCTCTAGCTC 60.494 52.174 0.00 0.00 32.12 4.09
168 169 2.436173 GGGCTACAAACATCCTCTAGCT 59.564 50.000 0.00 0.00 32.12 3.32
169 170 2.485657 GGGGCTACAAACATCCTCTAGC 60.486 54.545 0.00 0.00 0.00 3.42
170 171 2.224066 CGGGGCTACAAACATCCTCTAG 60.224 54.545 0.00 0.00 0.00 2.43
171 172 1.760613 CGGGGCTACAAACATCCTCTA 59.239 52.381 0.00 0.00 0.00 2.43
172 173 0.541863 CGGGGCTACAAACATCCTCT 59.458 55.000 0.00 0.00 0.00 3.69
173 174 1.095807 GCGGGGCTACAAACATCCTC 61.096 60.000 0.00 0.00 0.00 3.71
174 175 1.077716 GCGGGGCTACAAACATCCT 60.078 57.895 0.00 0.00 0.00 3.24
175 176 2.119029 GGCGGGGCTACAAACATCC 61.119 63.158 0.00 0.00 0.00 3.51
176 177 0.679960 AAGGCGGGGCTACAAACATC 60.680 55.000 0.00 0.00 0.00 3.06
177 178 0.679960 GAAGGCGGGGCTACAAACAT 60.680 55.000 0.00 0.00 0.00 2.71
178 179 1.302993 GAAGGCGGGGCTACAAACA 60.303 57.895 0.00 0.00 0.00 2.83
179 180 2.396157 CGAAGGCGGGGCTACAAAC 61.396 63.158 0.00 0.00 0.00 2.93
180 181 2.046700 CGAAGGCGGGGCTACAAA 60.047 61.111 0.00 0.00 0.00 2.83
181 182 4.770874 GCGAAGGCGGGGCTACAA 62.771 66.667 0.00 0.00 38.16 2.41
202 203 2.807895 CCAGTGTTCCCGTACGCG 60.808 66.667 10.49 3.53 33.83 6.01
203 204 3.116531 GCCAGTGTTCCCGTACGC 61.117 66.667 10.49 0.00 0.00 4.42
204 205 2.807895 CGCCAGTGTTCCCGTACG 60.808 66.667 8.69 8.69 0.00 3.67
205 206 2.433664 CCGCCAGTGTTCCCGTAC 60.434 66.667 0.00 0.00 0.00 3.67
206 207 2.918802 ACCGCCAGTGTTCCCGTA 60.919 61.111 0.00 0.00 0.00 4.02
207 208 4.619227 CACCGCCAGTGTTCCCGT 62.619 66.667 0.00 0.00 41.93 5.28
236 237 3.148279 ATCGTCCTCCTCGGTGGC 61.148 66.667 0.00 0.00 35.26 5.01
237 238 1.753078 TCATCGTCCTCCTCGGTGG 60.753 63.158 0.00 0.00 39.48 4.61
238 239 1.433879 GTCATCGTCCTCCTCGGTG 59.566 63.158 0.00 0.00 40.24 4.94
239 240 1.753463 GGTCATCGTCCTCCTCGGT 60.753 63.158 0.00 0.00 0.00 4.69
240 241 1.753078 TGGTCATCGTCCTCCTCGG 60.753 63.158 0.00 0.00 0.00 4.63
241 242 1.313091 TGTGGTCATCGTCCTCCTCG 61.313 60.000 0.00 0.00 0.00 4.63
242 243 0.895530 TTGTGGTCATCGTCCTCCTC 59.104 55.000 0.00 0.00 0.00 3.71
243 244 0.608640 GTTGTGGTCATCGTCCTCCT 59.391 55.000 0.00 0.00 0.00 3.69
244 245 0.736325 CGTTGTGGTCATCGTCCTCC 60.736 60.000 0.00 0.00 33.68 4.30
245 246 0.242825 TCGTTGTGGTCATCGTCCTC 59.757 55.000 0.00 0.00 37.80 3.71
246 247 0.243907 CTCGTTGTGGTCATCGTCCT 59.756 55.000 0.00 0.00 37.80 3.85
247 248 1.352156 GCTCGTTGTGGTCATCGTCC 61.352 60.000 0.00 0.00 37.80 4.79
248 249 0.388649 AGCTCGTTGTGGTCATCGTC 60.389 55.000 0.00 0.00 37.80 4.20
249 250 0.388649 GAGCTCGTTGTGGTCATCGT 60.389 55.000 0.00 0.00 37.80 3.73
250 251 0.109086 AGAGCTCGTTGTGGTCATCG 60.109 55.000 8.37 0.00 37.89 3.84
251 252 2.941453 TAGAGCTCGTTGTGGTCATC 57.059 50.000 8.37 0.00 34.73 2.92
252 253 2.826128 TCTTAGAGCTCGTTGTGGTCAT 59.174 45.455 8.37 0.00 34.73 3.06
253 254 2.235891 TCTTAGAGCTCGTTGTGGTCA 58.764 47.619 8.37 0.00 34.73 4.02
254 255 3.512033 ATCTTAGAGCTCGTTGTGGTC 57.488 47.619 8.37 0.00 0.00 4.02
255 256 3.963428 AATCTTAGAGCTCGTTGTGGT 57.037 42.857 8.37 0.00 0.00 4.16
256 257 5.613358 AAAAATCTTAGAGCTCGTTGTGG 57.387 39.130 8.37 0.00 0.00 4.17
287 288 9.881529 CGTAGTTCAAGTCTAATCTTATACTCC 57.118 37.037 0.00 0.00 0.00 3.85
295 296 9.447157 AGTAAGTACGTAGTTCAAGTCTAATCT 57.553 33.333 18.66 0.00 37.78 2.40
296 297 9.488124 CAGTAAGTACGTAGTTCAAGTCTAATC 57.512 37.037 18.66 0.00 37.78 1.75
297 298 9.224267 TCAGTAAGTACGTAGTTCAAGTCTAAT 57.776 33.333 18.66 0.00 37.78 1.73
298 299 8.607441 TCAGTAAGTACGTAGTTCAAGTCTAA 57.393 34.615 18.66 0.00 37.78 2.10
299 300 8.783833 ATCAGTAAGTACGTAGTTCAAGTCTA 57.216 34.615 18.66 0.00 37.78 2.59
300 301 7.389884 TGATCAGTAAGTACGTAGTTCAAGTCT 59.610 37.037 18.66 8.40 37.78 3.24
301 302 7.524912 TGATCAGTAAGTACGTAGTTCAAGTC 58.475 38.462 18.66 11.98 37.78 3.01
302 303 7.444629 TGATCAGTAAGTACGTAGTTCAAGT 57.555 36.000 18.66 3.40 37.78 3.16
303 304 7.007188 CGTTGATCAGTAAGTACGTAGTTCAAG 59.993 40.741 18.66 9.92 37.78 3.02
304 305 6.798476 CGTTGATCAGTAAGTACGTAGTTCAA 59.202 38.462 18.66 12.74 37.78 2.69
305 306 6.309436 CGTTGATCAGTAAGTACGTAGTTCA 58.691 40.000 18.66 7.45 37.78 3.18
306 307 5.736358 CCGTTGATCAGTAAGTACGTAGTTC 59.264 44.000 18.66 10.77 37.78 3.01
307 308 5.634896 CCGTTGATCAGTAAGTACGTAGTT 58.365 41.667 19.04 19.04 37.78 2.24
309 310 4.033684 GCCGTTGATCAGTAAGTACGTAG 58.966 47.826 12.80 2.19 0.00 3.51
310 311 3.691118 AGCCGTTGATCAGTAAGTACGTA 59.309 43.478 12.80 0.00 0.00 3.57
311 312 2.490903 AGCCGTTGATCAGTAAGTACGT 59.509 45.455 12.80 0.00 0.00 3.57
312 313 3.146618 AGCCGTTGATCAGTAAGTACG 57.853 47.619 8.11 8.11 0.00 3.67
313 314 5.041940 CCTTAGCCGTTGATCAGTAAGTAC 58.958 45.833 0.00 0.00 0.00 2.73
314 315 4.708421 ACCTTAGCCGTTGATCAGTAAGTA 59.292 41.667 0.00 0.00 0.00 2.24
315 316 3.514309 ACCTTAGCCGTTGATCAGTAAGT 59.486 43.478 0.00 0.00 0.00 2.24
316 317 4.113354 GACCTTAGCCGTTGATCAGTAAG 58.887 47.826 0.00 0.58 0.00 2.34
317 318 3.512329 TGACCTTAGCCGTTGATCAGTAA 59.488 43.478 0.00 0.00 0.00 2.24
318 319 3.093814 TGACCTTAGCCGTTGATCAGTA 58.906 45.455 0.00 0.00 0.00 2.74
319 320 1.899814 TGACCTTAGCCGTTGATCAGT 59.100 47.619 0.00 0.00 0.00 3.41
320 321 2.672961 TGACCTTAGCCGTTGATCAG 57.327 50.000 0.00 0.00 0.00 2.90
321 322 4.746535 TTATGACCTTAGCCGTTGATCA 57.253 40.909 0.00 0.00 0.00 2.92
322 323 5.992217 AGATTTATGACCTTAGCCGTTGATC 59.008 40.000 0.00 0.00 0.00 2.92
323 324 5.930135 AGATTTATGACCTTAGCCGTTGAT 58.070 37.500 0.00 0.00 0.00 2.57
324 325 5.353394 AGATTTATGACCTTAGCCGTTGA 57.647 39.130 0.00 0.00 0.00 3.18
325 326 6.436843 AAAGATTTATGACCTTAGCCGTTG 57.563 37.500 0.00 0.00 0.00 4.10
326 327 6.657541 TCAAAAGATTTATGACCTTAGCCGTT 59.342 34.615 0.00 0.00 0.00 4.44
327 328 6.177610 TCAAAAGATTTATGACCTTAGCCGT 58.822 36.000 0.00 0.00 0.00 5.68
328 329 6.677781 TCAAAAGATTTATGACCTTAGCCG 57.322 37.500 0.00 0.00 0.00 5.52
329 330 8.470002 ACAATCAAAAGATTTATGACCTTAGCC 58.530 33.333 0.00 0.00 0.00 3.93
330 331 9.860898 AACAATCAAAAGATTTATGACCTTAGC 57.139 29.630 0.00 0.00 0.00 3.09
334 335 9.696917 GACAAACAATCAAAAGATTTATGACCT 57.303 29.630 0.00 0.00 0.00 3.85
335 336 9.696917 AGACAAACAATCAAAAGATTTATGACC 57.303 29.630 0.00 0.00 0.00 4.02
341 342 9.434420 TCAAACAGACAAACAATCAAAAGATTT 57.566 25.926 0.00 0.00 0.00 2.17
342 343 9.603921 ATCAAACAGACAAACAATCAAAAGATT 57.396 25.926 0.00 0.00 0.00 2.40
343 344 9.603921 AATCAAACAGACAAACAATCAAAAGAT 57.396 25.926 0.00 0.00 0.00 2.40
381 382 9.884636 TGAACTTAAGCAATGTACAGTGTATAT 57.115 29.630 22.95 6.48 0.00 0.86
382 383 9.884636 ATGAACTTAAGCAATGTACAGTGTATA 57.115 29.630 22.95 13.90 0.00 1.47
383 384 8.668353 CATGAACTTAAGCAATGTACAGTGTAT 58.332 33.333 22.95 14.81 0.00 2.29
384 385 7.659799 ACATGAACTTAAGCAATGTACAGTGTA 59.340 33.333 22.95 7.29 0.00 2.90
385 386 6.486657 ACATGAACTTAAGCAATGTACAGTGT 59.513 34.615 22.95 8.27 0.00 3.55
386 387 6.902341 ACATGAACTTAAGCAATGTACAGTG 58.098 36.000 18.64 18.64 0.00 3.66
387 388 7.228507 TGAACATGAACTTAAGCAATGTACAGT 59.771 33.333 14.97 0.00 0.00 3.55
388 389 7.584108 TGAACATGAACTTAAGCAATGTACAG 58.416 34.615 14.97 0.00 0.00 2.74
389 390 7.503521 TGAACATGAACTTAAGCAATGTACA 57.496 32.000 14.97 0.00 0.00 2.90
411 412 9.709495 CAAGACTTTCCCAAAATTCAAATATGA 57.291 29.630 0.00 0.00 0.00 2.15
412 413 9.492973 ACAAGACTTTCCCAAAATTCAAATATG 57.507 29.630 0.00 0.00 0.00 1.78
414 415 9.974980 GTACAAGACTTTCCCAAAATTCAAATA 57.025 29.630 0.00 0.00 0.00 1.40
415 416 8.704668 AGTACAAGACTTTCCCAAAATTCAAAT 58.295 29.630 0.00 0.00 33.13 2.32
416 417 8.073467 AGTACAAGACTTTCCCAAAATTCAAA 57.927 30.769 0.00 0.00 33.13 2.69
417 418 7.559897 AGAGTACAAGACTTTCCCAAAATTCAA 59.440 33.333 0.00 0.00 39.06 2.69
418 419 7.060421 AGAGTACAAGACTTTCCCAAAATTCA 58.940 34.615 0.00 0.00 39.06 2.57
419 420 7.445707 AGAGAGTACAAGACTTTCCCAAAATTC 59.554 37.037 0.00 0.00 39.61 2.17
420 421 7.290813 AGAGAGTACAAGACTTTCCCAAAATT 58.709 34.615 0.00 0.00 39.61 1.82
421 422 6.842676 AGAGAGTACAAGACTTTCCCAAAAT 58.157 36.000 0.00 0.00 39.61 1.82
422 423 6.248569 AGAGAGTACAAGACTTTCCCAAAA 57.751 37.500 0.00 0.00 39.61 2.44
423 424 5.509163 CGAGAGAGTACAAGACTTTCCCAAA 60.509 44.000 0.00 0.00 39.61 3.28
424 425 4.022242 CGAGAGAGTACAAGACTTTCCCAA 60.022 45.833 0.00 0.00 39.61 4.12
425 426 3.506455 CGAGAGAGTACAAGACTTTCCCA 59.494 47.826 0.00 0.00 39.61 4.37
426 427 3.119424 CCGAGAGAGTACAAGACTTTCCC 60.119 52.174 0.00 0.00 39.61 3.97
427 428 3.757493 TCCGAGAGAGTACAAGACTTTCC 59.243 47.826 0.00 0.00 39.61 3.13
428 429 5.449451 GGATCCGAGAGAGTACAAGACTTTC 60.449 48.000 0.00 0.00 39.06 2.62
429 430 4.399934 GGATCCGAGAGAGTACAAGACTTT 59.600 45.833 0.00 0.00 39.06 2.66
430 431 3.949113 GGATCCGAGAGAGTACAAGACTT 59.051 47.826 0.00 0.00 39.06 3.01
431 432 3.054287 TGGATCCGAGAGAGTACAAGACT 60.054 47.826 7.39 0.00 42.90 3.24
432 433 3.280295 TGGATCCGAGAGAGTACAAGAC 58.720 50.000 7.39 0.00 0.00 3.01
433 434 3.646736 TGGATCCGAGAGAGTACAAGA 57.353 47.619 7.39 0.00 0.00 3.02
434 435 6.582677 AATATGGATCCGAGAGAGTACAAG 57.417 41.667 7.39 0.00 0.00 3.16
435 436 7.232188 ACTAATATGGATCCGAGAGAGTACAA 58.768 38.462 7.39 0.00 0.00 2.41
436 437 6.780901 ACTAATATGGATCCGAGAGAGTACA 58.219 40.000 7.39 0.00 0.00 2.90
437 438 7.690952 AACTAATATGGATCCGAGAGAGTAC 57.309 40.000 7.39 0.00 0.00 2.73
438 439 9.616156 GATAACTAATATGGATCCGAGAGAGTA 57.384 37.037 7.39 0.00 0.00 2.59
439 440 7.281324 CGATAACTAATATGGATCCGAGAGAGT 59.719 40.741 7.39 4.98 0.00 3.24
440 441 7.635423 CGATAACTAATATGGATCCGAGAGAG 58.365 42.308 7.39 4.32 0.00 3.20
441 442 6.038382 GCGATAACTAATATGGATCCGAGAGA 59.962 42.308 7.39 0.00 0.00 3.10
442 443 6.038825 AGCGATAACTAATATGGATCCGAGAG 59.961 42.308 7.39 2.48 0.00 3.20
443 444 5.886474 AGCGATAACTAATATGGATCCGAGA 59.114 40.000 7.39 0.00 0.00 4.04
444 445 5.974158 CAGCGATAACTAATATGGATCCGAG 59.026 44.000 7.39 1.76 0.00 4.63
445 446 5.650703 TCAGCGATAACTAATATGGATCCGA 59.349 40.000 7.39 0.00 0.00 4.55
446 447 5.891451 TCAGCGATAACTAATATGGATCCG 58.109 41.667 7.39 0.00 0.00 4.18
447 448 8.723942 AAATCAGCGATAACTAATATGGATCC 57.276 34.615 4.20 4.20 0.00 3.36
449 450 9.319143 GCTAAATCAGCGATAACTAATATGGAT 57.681 33.333 0.00 0.00 41.37 3.41
450 451 8.703604 GCTAAATCAGCGATAACTAATATGGA 57.296 34.615 0.00 0.00 41.37 3.41
508 509 3.788116 TTCACCCCTATTCCTACTGGA 57.212 47.619 0.00 0.00 41.36 3.86
509 510 6.509523 TTATTTCACCCCTATTCCTACTGG 57.490 41.667 0.00 0.00 0.00 4.00
510 511 7.574607 ACTTTATTTCACCCCTATTCCTACTG 58.425 38.462 0.00 0.00 0.00 2.74
511 512 7.147355 GGACTTTATTTCACCCCTATTCCTACT 60.147 40.741 0.00 0.00 0.00 2.57
512 513 6.996879 GGACTTTATTTCACCCCTATTCCTAC 59.003 42.308 0.00 0.00 0.00 3.18
513 514 6.102174 GGGACTTTATTTCACCCCTATTCCTA 59.898 42.308 0.00 0.00 35.00 2.94
514 515 5.103643 GGGACTTTATTTCACCCCTATTCCT 60.104 44.000 0.00 0.00 35.00 3.36
515 516 5.138276 GGGACTTTATTTCACCCCTATTCC 58.862 45.833 0.00 0.00 35.00 3.01
516 517 4.820173 CGGGACTTTATTTCACCCCTATTC 59.180 45.833 0.00 0.00 37.49 1.75
517 518 4.475747 TCGGGACTTTATTTCACCCCTATT 59.524 41.667 0.00 0.00 37.49 1.73
518 519 4.042174 TCGGGACTTTATTTCACCCCTAT 58.958 43.478 0.00 0.00 37.49 2.57
519 520 3.452878 TCGGGACTTTATTTCACCCCTA 58.547 45.455 0.00 0.00 37.49 3.53
520 521 2.238898 CTCGGGACTTTATTTCACCCCT 59.761 50.000 0.00 0.00 37.49 4.79
521 522 2.237893 TCTCGGGACTTTATTTCACCCC 59.762 50.000 0.00 0.00 37.49 4.95
522 523 3.622166 TCTCGGGACTTTATTTCACCC 57.378 47.619 0.00 0.00 37.42 4.61
523 524 6.510879 AAATTCTCGGGACTTTATTTCACC 57.489 37.500 0.00 0.00 0.00 4.02
524 525 7.750903 CAGAAAATTCTCGGGACTTTATTTCAC 59.249 37.037 0.52 0.00 34.74 3.18
525 526 7.447238 ACAGAAAATTCTCGGGACTTTATTTCA 59.553 33.333 0.52 0.00 34.74 2.69
526 527 7.750903 CACAGAAAATTCTCGGGACTTTATTTC 59.249 37.037 0.52 1.01 34.74 2.17
527 528 7.447238 TCACAGAAAATTCTCGGGACTTTATTT 59.553 33.333 0.52 0.00 34.74 1.40
528 529 6.940298 TCACAGAAAATTCTCGGGACTTTATT 59.060 34.615 0.52 0.00 34.74 1.40
529 530 6.472887 TCACAGAAAATTCTCGGGACTTTAT 58.527 36.000 0.52 0.00 34.74 1.40
530 531 5.860611 TCACAGAAAATTCTCGGGACTTTA 58.139 37.500 0.52 0.00 34.74 1.85
531 532 4.714632 TCACAGAAAATTCTCGGGACTTT 58.285 39.130 0.00 0.00 34.74 2.66
532 533 4.351874 TCACAGAAAATTCTCGGGACTT 57.648 40.909 0.00 0.00 34.74 3.01
533 534 4.351874 TTCACAGAAAATTCTCGGGACT 57.648 40.909 0.00 0.00 34.74 3.85
534 535 4.695455 TGATTCACAGAAAATTCTCGGGAC 59.305 41.667 0.00 0.00 34.74 4.46
535 536 4.695455 GTGATTCACAGAAAATTCTCGGGA 59.305 41.667 11.93 0.00 34.74 5.14
536 537 4.697352 AGTGATTCACAGAAAATTCTCGGG 59.303 41.667 18.57 0.00 36.74 5.14
537 538 5.869753 AGTGATTCACAGAAAATTCTCGG 57.130 39.130 18.57 0.00 36.74 4.63
538 539 6.891624 TGAAGTGATTCACAGAAAATTCTCG 58.108 36.000 18.57 0.00 36.74 4.04
539 540 9.688592 AAATGAAGTGATTCACAGAAAATTCTC 57.311 29.630 18.57 2.46 36.74 2.87
540 541 9.688592 GAAATGAAGTGATTCACAGAAAATTCT 57.311 29.630 18.57 0.00 36.74 2.40
541 542 9.688592 AGAAATGAAGTGATTCACAGAAAATTC 57.311 29.630 18.57 12.08 36.74 2.17
544 545 9.874205 AAAAGAAATGAAGTGATTCACAGAAAA 57.126 25.926 18.57 0.58 36.74 2.29
545 546 9.304731 CAAAAGAAATGAAGTGATTCACAGAAA 57.695 29.630 18.57 2.26 36.74 2.52
546 547 7.922278 CCAAAAGAAATGAAGTGATTCACAGAA 59.078 33.333 18.57 3.96 36.74 3.02
547 548 7.428020 CCAAAAGAAATGAAGTGATTCACAGA 58.572 34.615 18.57 2.60 36.74 3.41
548 549 6.643770 CCCAAAAGAAATGAAGTGATTCACAG 59.356 38.462 18.57 0.00 36.74 3.66
549 550 6.462768 CCCCAAAAGAAATGAAGTGATTCACA 60.463 38.462 18.57 0.00 36.74 3.58
550 551 5.928264 CCCCAAAAGAAATGAAGTGATTCAC 59.072 40.000 8.82 8.82 33.23 3.18
551 552 5.602145 ACCCCAAAAGAAATGAAGTGATTCA 59.398 36.000 0.00 0.00 35.15 2.57
552 553 6.101650 ACCCCAAAAGAAATGAAGTGATTC 57.898 37.500 0.00 0.00 0.00 2.52
553 554 6.499106 AACCCCAAAAGAAATGAAGTGATT 57.501 33.333 0.00 0.00 0.00 2.57
554 555 7.610580 TTAACCCCAAAAGAAATGAAGTGAT 57.389 32.000 0.00 0.00 0.00 3.06
555 556 7.610580 ATTAACCCCAAAAGAAATGAAGTGA 57.389 32.000 0.00 0.00 0.00 3.41
556 557 9.942850 ATAATTAACCCCAAAAGAAATGAAGTG 57.057 29.630 0.00 0.00 0.00 3.16
558 559 9.599866 GGATAATTAACCCCAAAAGAAATGAAG 57.400 33.333 0.24 0.00 0.00 3.02
559 560 9.332713 AGGATAATTAACCCCAAAAGAAATGAA 57.667 29.630 8.09 0.00 0.00 2.57
560 561 8.909423 AGGATAATTAACCCCAAAAGAAATGA 57.091 30.769 8.09 0.00 0.00 2.57
561 562 9.958180 AAAGGATAATTAACCCCAAAAGAAATG 57.042 29.630 8.09 0.00 0.00 2.32
563 564 9.785982 CAAAAGGATAATTAACCCCAAAAGAAA 57.214 29.630 8.09 0.00 0.00 2.52
564 565 7.880713 GCAAAAGGATAATTAACCCCAAAAGAA 59.119 33.333 8.09 0.00 0.00 2.52
565 566 7.390823 GCAAAAGGATAATTAACCCCAAAAGA 58.609 34.615 8.09 0.00 0.00 2.52
566 567 6.597672 GGCAAAAGGATAATTAACCCCAAAAG 59.402 38.462 8.09 0.00 0.00 2.27
599 600 2.223782 GCAAAACTGAGCACATGGACAA 60.224 45.455 0.00 0.00 0.00 3.18
1199 1200 3.663995 TCAACCCATTGCTCAAACATG 57.336 42.857 0.00 0.00 35.63 3.21
1694 1697 9.414295 CTGCATTTCATTGATCAAAAGTTTCTA 57.586 29.630 13.09 0.00 0.00 2.10
2182 2186 2.290464 CTAAACACCACAAACCCACGA 58.710 47.619 0.00 0.00 0.00 4.35
2249 2253 9.315363 CTCACTATGTATACCTTCTTTCCCTAT 57.685 37.037 0.00 0.00 0.00 2.57
2513 2519 3.412408 GGGGGTGAGAAGCCCTCC 61.412 72.222 12.46 2.23 45.39 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.