Multiple sequence alignment - TraesCS2B01G597800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G597800 chr2B 100.000 4097 0 0 1 4097 780876179 780872083 0.000000e+00 7566.0
1 TraesCS2B01G597800 chr2B 85.764 3189 294 72 377 3512 781149086 781152167 0.000000e+00 3227.0
2 TraesCS2B01G597800 chr2B 84.859 2021 205 46 1578 3576 781085479 781083538 0.000000e+00 1943.0
3 TraesCS2B01G597800 chr2B 94.983 598 21 2 2051 2641 780829667 780829072 0.000000e+00 929.0
4 TraesCS2B01G597800 chr2B 87.322 844 63 18 2694 3523 780829064 780828251 0.000000e+00 926.0
5 TraesCS2B01G597800 chr2B 84.687 431 50 10 3594 4024 781083461 781083047 2.280000e-112 416.0
6 TraesCS2B01G597800 chr2B 79.538 303 27 16 3829 4097 781152484 781152785 2.520000e-42 183.0
7 TraesCS2B01G597800 chr2B 89.062 64 7 0 314 377 604330231 604330294 3.390000e-11 80.5
8 TraesCS2B01G597800 chr2D 87.311 2648 236 48 377 2981 651431099 651433689 0.000000e+00 2937.0
9 TraesCS2B01G597800 chr2D 92.783 1732 95 18 920 2630 117631153 117632875 0.000000e+00 2479.0
10 TraesCS2B01G597800 chr2D 88.270 1526 129 24 1033 2533 651574821 651576321 0.000000e+00 1781.0
11 TraesCS2B01G597800 chr2D 88.413 863 76 19 2679 3524 651421947 651421092 0.000000e+00 1018.0
12 TraesCS2B01G597800 chr2D 90.331 786 47 16 1866 2630 651422747 651421970 0.000000e+00 1003.0
13 TraesCS2B01G597800 chr2D 90.148 609 47 11 2679 3274 117632898 117633506 0.000000e+00 780.0
14 TraesCS2B01G597800 chr2D 97.356 416 9 2 3309 3724 651490175 651490588 0.000000e+00 706.0
15 TraesCS2B01G597800 chr2D 90.467 493 28 6 3588 4061 651527951 651528443 2.080000e-177 632.0
16 TraesCS2B01G597800 chr2D 97.068 307 9 0 3791 4097 651490586 651490892 6.070000e-143 518.0
17 TraesCS2B01G597800 chr2D 97.358 265 7 0 3050 3314 651433693 651433957 6.250000e-123 451.0
18 TraesCS2B01G597800 chr2D 85.612 278 28 9 3264 3537 651597381 651597650 8.670000e-72 281.0
19 TraesCS2B01G597800 chr2D 85.714 217 14 2 3788 3987 651598142 651598358 3.210000e-51 213.0
20 TraesCS2B01G597800 chr2D 77.329 322 28 22 740 1046 651574111 651574402 9.180000e-32 148.0
21 TraesCS2B01G597800 chr2D 81.818 88 11 3 2559 2641 651576320 651576407 7.350000e-08 69.4
22 TraesCS2B01G597800 chr2A 93.442 1845 86 17 849 2687 776212789 776214604 0.000000e+00 2704.0
23 TraesCS2B01G597800 chr2A 86.765 2448 225 38 808 3215 776171011 776168623 0.000000e+00 2634.0
24 TraesCS2B01G597800 chr2A 91.120 518 36 8 2708 3215 776214580 776215097 0.000000e+00 693.0
25 TraesCS2B01G597800 chr2A 95.105 286 14 0 3591 3876 776168254 776167969 6.250000e-123 451.0
26 TraesCS2B01G597800 chr2A 96.053 152 6 0 3946 4097 776167973 776167822 8.790000e-62 248.0
27 TraesCS2B01G597800 chr2A 91.620 179 15 0 3234 3412 776168660 776168482 8.790000e-62 248.0
28 TraesCS2B01G597800 chr2A 96.748 123 4 0 3458 3580 776168479 776168357 5.370000e-49 206.0
29 TraesCS2B01G597800 chr2A 89.610 77 8 0 741 817 776212706 776212782 9.370000e-17 99.0
30 TraesCS2B01G597800 chr2A 97.917 48 1 0 2641 2688 367831997 367831950 2.620000e-12 84.2
31 TraesCS2B01G597800 chr2A 90.000 60 4 1 2641 2700 582640009 582640066 4.390000e-10 76.8
32 TraesCS2B01G597800 chr2A 86.207 58 7 1 327 383 749943744 749943687 1.230000e-05 62.1
33 TraesCS2B01G597800 chr6D 93.353 1730 85 17 923 2630 69108803 69107082 0.000000e+00 2531.0
34 TraesCS2B01G597800 chr6D 90.081 615 48 11 2679 3280 69107059 69106445 0.000000e+00 785.0
35 TraesCS2B01G597800 chr4A 80.025 2358 327 74 826 3113 632615540 632617823 0.000000e+00 1613.0
36 TraesCS2B01G597800 chr4A 97.872 47 1 0 2640 2686 644632956 644632910 9.440000e-12 82.4
37 TraesCS2B01G597800 chr4A 84.375 64 9 1 314 377 327403812 327403874 1.230000e-05 62.1
38 TraesCS2B01G597800 chrUn 91.253 926 77 4 1277 2200 23720256 23719333 0.000000e+00 1258.0
39 TraesCS2B01G597800 chrUn 89.412 850 66 15 2681 3524 23718766 23717935 0.000000e+00 1050.0
40 TraesCS2B01G597800 chr1D 97.043 541 12 3 1551 2090 226779674 226779137 0.000000e+00 907.0
41 TraesCS2B01G597800 chr1D 97.043 541 12 3 1551 2090 264044680 264044143 0.000000e+00 907.0
42 TraesCS2B01G597800 chr1D 96.244 426 15 1 923 1347 264045094 264044669 0.000000e+00 697.0
43 TraesCS2B01G597800 chr1D 91.667 48 4 0 330 377 36305711 36305758 2.640000e-07 67.6
44 TraesCS2B01G597800 chr1D 91.667 48 4 0 330 377 384952712 384952759 2.640000e-07 67.6
45 TraesCS2B01G597800 chr5D 96.479 426 14 1 923 1347 548473929 548473504 0.000000e+00 702.0
46 TraesCS2B01G597800 chr4D 96.244 426 15 1 923 1347 280249022 280248597 0.000000e+00 697.0
47 TraesCS2B01G597800 chr3D 96.037 429 16 1 920 1347 68368790 68369218 0.000000e+00 697.0
48 TraesCS2B01G597800 chr6B 90.476 84 6 1 298 381 18125019 18125100 4.330000e-20 110.0
49 TraesCS2B01G597800 chr6B 92.982 57 3 1 2639 2695 365700832 365700887 9.440000e-12 82.4
50 TraesCS2B01G597800 chr7A 97.917 48 1 0 2641 2688 721264982 721264935 2.620000e-12 84.2
51 TraesCS2B01G597800 chr7A 89.062 64 5 2 2641 2703 29845866 29845928 1.220000e-10 78.7
52 TraesCS2B01G597800 chr6A 92.982 57 3 1 2641 2697 122735999 122736054 9.440000e-12 82.4
53 TraesCS2B01G597800 chr3A 95.918 49 2 0 2641 2689 679003952 679004000 3.390000e-11 80.5
54 TraesCS2B01G597800 chr3A 90.000 50 5 0 314 363 612968969 612969018 9.510000e-07 65.8
55 TraesCS2B01G597800 chr1A 91.837 49 4 0 330 378 528845017 528844969 7.350000e-08 69.4
56 TraesCS2B01G597800 chr1A 85.938 64 8 1 314 377 155765674 155765736 2.640000e-07 67.6
57 TraesCS2B01G597800 chr5B 100.000 32 0 0 740 771 703901498 703901467 4.420000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G597800 chr2B 780872083 780876179 4096 True 7566.000000 7566 100.000000 1 4097 1 chr2B.!!$R1 4096
1 TraesCS2B01G597800 chr2B 781149086 781152785 3699 False 1705.000000 3227 82.651000 377 4097 2 chr2B.!!$F2 3720
2 TraesCS2B01G597800 chr2B 781083047 781085479 2432 True 1179.500000 1943 84.773000 1578 4024 2 chr2B.!!$R3 2446
3 TraesCS2B01G597800 chr2B 780828251 780829667 1416 True 927.500000 929 91.152500 2051 3523 2 chr2B.!!$R2 1472
4 TraesCS2B01G597800 chr2D 651431099 651433957 2858 False 1694.000000 2937 92.334500 377 3314 2 chr2D.!!$F3 2937
5 TraesCS2B01G597800 chr2D 117631153 117633506 2353 False 1629.500000 2479 91.465500 920 3274 2 chr2D.!!$F2 2354
6 TraesCS2B01G597800 chr2D 651421092 651422747 1655 True 1010.500000 1018 89.372000 1866 3524 2 chr2D.!!$R1 1658
7 TraesCS2B01G597800 chr2D 651574111 651576407 2296 False 666.133333 1781 82.472333 740 2641 3 chr2D.!!$F5 1901
8 TraesCS2B01G597800 chr2D 651490175 651490892 717 False 612.000000 706 97.212000 3309 4097 2 chr2D.!!$F4 788
9 TraesCS2B01G597800 chr2D 651597381 651598358 977 False 247.000000 281 85.663000 3264 3987 2 chr2D.!!$F6 723
10 TraesCS2B01G597800 chr2A 776212706 776215097 2391 False 1165.333333 2704 91.390667 741 3215 3 chr2A.!!$F2 2474
11 TraesCS2B01G597800 chr2A 776167822 776171011 3189 True 757.400000 2634 93.258200 808 4097 5 chr2A.!!$R3 3289
12 TraesCS2B01G597800 chr6D 69106445 69108803 2358 True 1658.000000 2531 91.717000 923 3280 2 chr6D.!!$R1 2357
13 TraesCS2B01G597800 chr4A 632615540 632617823 2283 False 1613.000000 1613 80.025000 826 3113 1 chr4A.!!$F2 2287
14 TraesCS2B01G597800 chrUn 23717935 23720256 2321 True 1154.000000 1258 90.332500 1277 3524 2 chrUn.!!$R1 2247
15 TraesCS2B01G597800 chr1D 226779137 226779674 537 True 907.000000 907 97.043000 1551 2090 1 chr1D.!!$R1 539
16 TraesCS2B01G597800 chr1D 264044143 264045094 951 True 802.000000 907 96.643500 923 2090 2 chr1D.!!$R2 1167

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
77 78 0.036671 AAAGCGAACGGGACCCTAAG 60.037 55.0 9.41 0.0 0.00 2.18 F
155 156 0.103208 CTAGCTGTCGGCCCAAGTAG 59.897 60.0 0.00 0.0 43.05 2.57 F
695 710 0.104777 TCTCTCCCCATCCATCCAGG 60.105 60.0 0.00 0.0 39.47 4.45 F
1500 1998 0.108138 CCTACCCAGTTGCCTTCTCG 60.108 60.0 0.00 0.0 0.00 4.04 F
2720 3649 0.111639 TTGTCCTTAGGGTTGGTGGC 59.888 55.0 0.00 0.0 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1065 1563 0.105194 TGTCAAGGAGGAGGTGGTCA 60.105 55.000 0.00 0.0 0.00 4.02 R
1500 1998 0.300789 GCATAAGCGTCGTAAGCCAC 59.699 55.000 0.00 0.0 34.64 5.01 R
2465 3356 1.028130 CACTCGATGCAGAGGCTAGA 58.972 55.000 7.77 0.0 42.31 2.43 R
2823 3756 0.754217 CCTTGGATGGCTCCCACATG 60.754 60.000 0.00 0.0 41.29 3.21 R
3757 5053 3.016736 CAACTCCGGGTGCTGAAATATT 58.983 45.455 0.00 0.0 0.00 1.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.580867 CGAGCACGCTAGCTGGAC 60.581 66.667 13.93 0.00 46.75 4.02
27 28 2.202810 GAGCACGCTAGCTGGACC 60.203 66.667 13.93 0.00 46.75 4.46
28 29 4.135153 AGCACGCTAGCTGGACCG 62.135 66.667 13.93 0.00 44.66 4.79
29 30 4.129737 GCACGCTAGCTGGACCGA 62.130 66.667 13.93 0.00 0.00 4.69
30 31 2.202623 CACGCTAGCTGGACCGAC 60.203 66.667 13.93 0.00 0.00 4.79
31 32 3.450115 ACGCTAGCTGGACCGACC 61.450 66.667 13.93 0.00 39.54 4.79
32 33 4.208686 CGCTAGCTGGACCGACCC 62.209 72.222 13.93 0.00 38.00 4.46
33 34 3.075005 GCTAGCTGGACCGACCCA 61.075 66.667 7.70 0.00 38.00 4.51
34 35 2.893398 CTAGCTGGACCGACCCAC 59.107 66.667 0.00 0.00 38.00 4.61
35 36 1.982395 CTAGCTGGACCGACCCACA 60.982 63.158 0.00 0.00 38.00 4.17
36 37 2.227089 CTAGCTGGACCGACCCACAC 62.227 65.000 0.00 0.00 38.00 3.82
38 39 3.299977 CTGGACCGACCCACACGA 61.300 66.667 0.00 0.00 38.00 4.35
39 40 3.282745 CTGGACCGACCCACACGAG 62.283 68.421 0.00 0.00 38.00 4.18
40 41 4.065281 GGACCGACCCACACGAGG 62.065 72.222 0.00 0.00 0.00 4.63
41 42 4.736896 GACCGACCCACACGAGGC 62.737 72.222 0.00 0.00 0.00 4.70
43 44 4.742201 CCGACCCACACGAGGCTG 62.742 72.222 0.00 0.00 0.00 4.85
44 45 3.991051 CGACCCACACGAGGCTGT 61.991 66.667 0.00 0.00 0.00 4.40
45 46 2.426023 GACCCACACGAGGCTGTT 59.574 61.111 0.00 0.00 0.00 3.16
46 47 1.961277 GACCCACACGAGGCTGTTG 60.961 63.158 0.00 0.00 0.00 3.33
47 48 2.111043 CCCACACGAGGCTGTTGT 59.889 61.111 0.00 0.00 0.00 3.32
48 49 1.369692 CCCACACGAGGCTGTTGTA 59.630 57.895 0.00 0.00 0.00 2.41
49 50 0.250124 CCCACACGAGGCTGTTGTAA 60.250 55.000 0.00 0.00 0.00 2.41
50 51 1.148310 CCACACGAGGCTGTTGTAAG 58.852 55.000 0.00 0.00 0.00 2.34
51 52 0.512952 CACACGAGGCTGTTGTAAGC 59.487 55.000 0.00 0.00 42.75 3.09
52 53 0.105964 ACACGAGGCTGTTGTAAGCA 59.894 50.000 0.00 0.00 45.43 3.91
53 54 0.512952 CACGAGGCTGTTGTAAGCAC 59.487 55.000 0.00 0.00 45.43 4.40
54 55 0.602905 ACGAGGCTGTTGTAAGCACC 60.603 55.000 0.00 0.00 45.43 5.01
55 56 0.602638 CGAGGCTGTTGTAAGCACCA 60.603 55.000 0.00 0.00 45.43 4.17
56 57 1.160137 GAGGCTGTTGTAAGCACCAG 58.840 55.000 0.00 0.00 45.43 4.00
61 62 3.004024 CTGTTGTAAGCACCAGCAAAG 57.996 47.619 0.00 0.00 45.49 2.77
62 63 1.066908 TGTTGTAAGCACCAGCAAAGC 59.933 47.619 0.00 0.00 45.49 3.51
63 64 0.310543 TTGTAAGCACCAGCAAAGCG 59.689 50.000 0.00 0.00 45.49 4.68
64 65 0.533978 TGTAAGCACCAGCAAAGCGA 60.534 50.000 0.00 0.00 45.49 4.93
65 66 0.591170 GTAAGCACCAGCAAAGCGAA 59.409 50.000 0.00 0.00 45.49 4.70
66 67 0.591170 TAAGCACCAGCAAAGCGAAC 59.409 50.000 0.00 0.00 45.49 3.95
67 68 2.392613 AAGCACCAGCAAAGCGAACG 62.393 55.000 0.00 0.00 45.49 3.95
68 69 2.252260 CACCAGCAAAGCGAACGG 59.748 61.111 0.00 0.00 0.00 4.44
69 70 2.978010 ACCAGCAAAGCGAACGGG 60.978 61.111 0.00 0.00 0.00 5.28
70 71 2.668212 CCAGCAAAGCGAACGGGA 60.668 61.111 0.00 0.00 0.00 5.14
71 72 2.556287 CAGCAAAGCGAACGGGAC 59.444 61.111 0.00 0.00 0.00 4.46
72 73 2.668550 AGCAAAGCGAACGGGACC 60.669 61.111 0.00 0.00 0.00 4.46
73 74 3.733960 GCAAAGCGAACGGGACCC 61.734 66.667 0.00 0.00 0.00 4.46
74 75 2.032071 CAAAGCGAACGGGACCCT 59.968 61.111 9.41 0.00 0.00 4.34
75 76 1.294138 CAAAGCGAACGGGACCCTA 59.706 57.895 9.41 0.00 0.00 3.53
76 77 0.320946 CAAAGCGAACGGGACCCTAA 60.321 55.000 9.41 0.00 0.00 2.69
77 78 0.036671 AAAGCGAACGGGACCCTAAG 60.037 55.000 9.41 0.00 0.00 2.18
78 79 1.896122 AAGCGAACGGGACCCTAAGG 61.896 60.000 9.41 0.00 40.04 2.69
79 80 2.186125 CGAACGGGACCCTAAGGC 59.814 66.667 9.41 0.00 36.11 4.35
80 81 2.652095 CGAACGGGACCCTAAGGCA 61.652 63.158 9.41 0.00 36.11 4.75
81 82 1.078637 GAACGGGACCCTAAGGCAC 60.079 63.158 9.41 0.00 36.11 5.01
82 83 2.532465 GAACGGGACCCTAAGGCACC 62.532 65.000 9.41 0.00 36.11 5.01
83 84 3.006728 CGGGACCCTAAGGCACCA 61.007 66.667 9.41 0.00 35.37 4.17
84 85 2.598787 CGGGACCCTAAGGCACCAA 61.599 63.158 9.41 0.00 35.37 3.67
85 86 1.771646 GGGACCCTAAGGCACCAAA 59.228 57.895 2.09 0.00 35.37 3.28
86 87 0.323451 GGGACCCTAAGGCACCAAAG 60.323 60.000 2.09 0.00 35.37 2.77
87 88 0.696501 GGACCCTAAGGCACCAAAGA 59.303 55.000 0.00 0.00 36.11 2.52
88 89 1.340114 GGACCCTAAGGCACCAAAGAG 60.340 57.143 0.00 0.00 36.11 2.85
89 90 0.698818 ACCCTAAGGCACCAAAGAGG 59.301 55.000 0.00 0.00 39.50 3.69
90 91 0.991920 CCCTAAGGCACCAAAGAGGA 59.008 55.000 0.00 0.00 41.22 3.71
91 92 1.566231 CCCTAAGGCACCAAAGAGGAT 59.434 52.381 0.00 0.00 41.22 3.24
92 93 2.648059 CCTAAGGCACCAAAGAGGATG 58.352 52.381 0.00 0.00 41.22 3.51
93 94 2.025887 CCTAAGGCACCAAAGAGGATGT 60.026 50.000 0.00 0.00 41.22 3.06
94 95 2.206576 AAGGCACCAAAGAGGATGTC 57.793 50.000 0.00 0.00 41.22 3.06
95 96 1.366319 AGGCACCAAAGAGGATGTCT 58.634 50.000 0.00 0.00 41.22 3.41
97 98 1.815003 GGCACCAAAGAGGATGTCTTG 59.185 52.381 0.00 0.00 45.44 3.02
98 99 2.508526 GCACCAAAGAGGATGTCTTGT 58.491 47.619 0.00 0.00 45.44 3.16
99 100 2.887152 GCACCAAAGAGGATGTCTTGTT 59.113 45.455 0.00 0.00 45.44 2.83
100 101 4.072131 GCACCAAAGAGGATGTCTTGTTA 58.928 43.478 0.00 0.00 45.44 2.41
101 102 4.083271 GCACCAAAGAGGATGTCTTGTTAC 60.083 45.833 0.00 0.00 45.44 2.50
102 103 5.308825 CACCAAAGAGGATGTCTTGTTACT 58.691 41.667 0.00 0.00 45.44 2.24
103 104 5.180117 CACCAAAGAGGATGTCTTGTTACTG 59.820 44.000 0.00 0.00 45.44 2.74
104 105 4.697352 CCAAAGAGGATGTCTTGTTACTGG 59.303 45.833 0.00 0.00 45.44 4.00
105 106 3.618690 AGAGGATGTCTTGTTACTGGC 57.381 47.619 0.00 0.00 27.07 4.85
106 107 2.093973 AGAGGATGTCTTGTTACTGGCG 60.094 50.000 0.00 0.00 27.07 5.69
107 108 1.066143 AGGATGTCTTGTTACTGGCGG 60.066 52.381 0.00 0.00 0.00 6.13
108 109 1.338769 GGATGTCTTGTTACTGGCGGT 60.339 52.381 3.57 3.57 0.00 5.68
109 110 2.093869 GGATGTCTTGTTACTGGCGGTA 60.094 50.000 1.02 1.02 0.00 4.02
110 111 3.431766 GGATGTCTTGTTACTGGCGGTAT 60.432 47.826 7.07 0.00 0.00 2.73
111 112 3.688694 TGTCTTGTTACTGGCGGTATT 57.311 42.857 7.07 0.00 0.00 1.89
112 113 4.804868 TGTCTTGTTACTGGCGGTATTA 57.195 40.909 7.07 0.00 0.00 0.98
113 114 5.347620 TGTCTTGTTACTGGCGGTATTAT 57.652 39.130 7.07 0.00 0.00 1.28
114 115 5.736813 TGTCTTGTTACTGGCGGTATTATT 58.263 37.500 7.07 0.00 0.00 1.40
115 116 5.583061 TGTCTTGTTACTGGCGGTATTATTG 59.417 40.000 7.07 0.00 0.00 1.90
116 117 4.573201 TCTTGTTACTGGCGGTATTATTGC 59.427 41.667 7.07 0.00 0.00 3.56
121 122 2.641197 GGCGGTATTATTGCCCAGG 58.359 57.895 0.00 0.00 43.06 4.45
122 123 0.893727 GGCGGTATTATTGCCCAGGG 60.894 60.000 0.00 0.00 43.06 4.45
123 124 0.893727 GCGGTATTATTGCCCAGGGG 60.894 60.000 7.91 3.48 38.57 4.79
124 125 0.476771 CGGTATTATTGCCCAGGGGT 59.523 55.000 7.91 0.00 37.65 4.95
125 126 1.817740 CGGTATTATTGCCCAGGGGTG 60.818 57.143 7.91 0.00 37.65 4.61
126 127 1.328279 GTATTATTGCCCAGGGGTGC 58.672 55.000 7.91 0.00 37.65 5.01
127 128 0.187361 TATTATTGCCCAGGGGTGCC 59.813 55.000 7.91 0.00 37.65 5.01
128 129 1.593166 ATTATTGCCCAGGGGTGCCT 61.593 55.000 7.91 0.00 37.65 4.75
129 130 1.809939 TTATTGCCCAGGGGTGCCTT 61.810 55.000 7.91 0.00 37.65 4.35
130 131 1.809939 TATTGCCCAGGGGTGCCTTT 61.810 55.000 7.91 0.00 37.65 3.11
131 132 3.706315 TATTGCCCAGGGGTGCCTTTC 62.706 57.143 7.91 0.00 37.65 2.62
132 133 3.984732 GCCCAGGGGTGCCTTTCT 61.985 66.667 7.91 0.00 37.65 2.52
133 134 2.854076 CCCAGGGGTGCCTTTCTT 59.146 61.111 0.00 0.00 0.00 2.52
134 135 1.304464 CCCAGGGGTGCCTTTCTTC 60.304 63.158 0.00 0.00 0.00 2.87
135 136 1.770324 CCAGGGGTGCCTTTCTTCT 59.230 57.895 0.00 0.00 0.00 2.85
136 137 0.322906 CCAGGGGTGCCTTTCTTCTC 60.323 60.000 0.00 0.00 0.00 2.87
137 138 0.695347 CAGGGGTGCCTTTCTTCTCT 59.305 55.000 0.00 0.00 0.00 3.10
138 139 1.909302 CAGGGGTGCCTTTCTTCTCTA 59.091 52.381 0.00 0.00 0.00 2.43
139 140 2.093235 CAGGGGTGCCTTTCTTCTCTAG 60.093 54.545 0.00 0.00 0.00 2.43
140 141 1.407575 GGGGTGCCTTTCTTCTCTAGC 60.408 57.143 0.00 0.00 0.00 3.42
141 142 1.557371 GGGTGCCTTTCTTCTCTAGCT 59.443 52.381 0.00 0.00 0.00 3.32
142 143 2.626840 GGTGCCTTTCTTCTCTAGCTG 58.373 52.381 0.00 0.00 0.00 4.24
143 144 2.027653 GGTGCCTTTCTTCTCTAGCTGT 60.028 50.000 0.00 0.00 0.00 4.40
144 145 3.258228 GTGCCTTTCTTCTCTAGCTGTC 58.742 50.000 0.00 0.00 0.00 3.51
145 146 2.094494 TGCCTTTCTTCTCTAGCTGTCG 60.094 50.000 0.00 0.00 0.00 4.35
146 147 2.737039 GCCTTTCTTCTCTAGCTGTCGG 60.737 54.545 0.00 0.00 0.00 4.79
147 148 2.535331 CTTTCTTCTCTAGCTGTCGGC 58.465 52.381 0.00 0.00 42.19 5.54
148 149 0.818296 TTCTTCTCTAGCTGTCGGCC 59.182 55.000 0.00 0.00 43.05 6.13
149 150 1.038130 TCTTCTCTAGCTGTCGGCCC 61.038 60.000 0.00 0.00 43.05 5.80
150 151 1.304962 TTCTCTAGCTGTCGGCCCA 60.305 57.895 0.00 0.00 43.05 5.36
151 152 0.902984 TTCTCTAGCTGTCGGCCCAA 60.903 55.000 0.00 0.00 43.05 4.12
152 153 1.142748 CTCTAGCTGTCGGCCCAAG 59.857 63.158 0.00 0.00 43.05 3.61
153 154 1.608717 CTCTAGCTGTCGGCCCAAGT 61.609 60.000 0.00 0.00 43.05 3.16
154 155 0.323999 TCTAGCTGTCGGCCCAAGTA 60.324 55.000 0.00 0.00 43.05 2.24
155 156 0.103208 CTAGCTGTCGGCCCAAGTAG 59.897 60.000 0.00 0.00 43.05 2.57
156 157 1.327690 TAGCTGTCGGCCCAAGTAGG 61.328 60.000 0.00 0.00 43.05 3.18
164 165 4.489771 CCCAAGTAGGCTGGCCCG 62.490 72.222 8.11 0.00 39.21 6.13
165 166 3.399181 CCAAGTAGGCTGGCCCGA 61.399 66.667 8.11 0.00 39.21 5.14
166 167 2.187946 CAAGTAGGCTGGCCCGAG 59.812 66.667 8.11 0.00 39.21 4.63
167 168 3.083997 AAGTAGGCTGGCCCGAGG 61.084 66.667 8.11 0.00 39.21 4.63
178 179 2.045340 CCCGAGGCCGTTTTCCAT 60.045 61.111 0.00 0.00 0.00 3.41
179 180 1.222387 CCCGAGGCCGTTTTCCATA 59.778 57.895 0.00 0.00 0.00 2.74
180 181 0.179029 CCCGAGGCCGTTTTCCATAT 60.179 55.000 0.00 0.00 0.00 1.78
181 182 1.071071 CCCGAGGCCGTTTTCCATATA 59.929 52.381 0.00 0.00 0.00 0.86
182 183 2.290071 CCCGAGGCCGTTTTCCATATAT 60.290 50.000 0.00 0.00 0.00 0.86
183 184 3.408634 CCGAGGCCGTTTTCCATATATT 58.591 45.455 0.00 0.00 0.00 1.28
184 185 3.435671 CCGAGGCCGTTTTCCATATATTC 59.564 47.826 0.00 0.00 0.00 1.75
185 186 4.062293 CGAGGCCGTTTTCCATATATTCA 58.938 43.478 0.00 0.00 0.00 2.57
186 187 4.695455 CGAGGCCGTTTTCCATATATTCAT 59.305 41.667 0.00 0.00 0.00 2.57
187 188 5.872617 CGAGGCCGTTTTCCATATATTCATA 59.127 40.000 0.00 0.00 0.00 2.15
188 189 6.538742 CGAGGCCGTTTTCCATATATTCATAT 59.461 38.462 0.00 0.00 0.00 1.78
189 190 7.065803 CGAGGCCGTTTTCCATATATTCATATT 59.934 37.037 0.00 0.00 0.00 1.28
190 191 8.650143 AGGCCGTTTTCCATATATTCATATTT 57.350 30.769 0.00 0.00 0.00 1.40
191 192 8.739972 AGGCCGTTTTCCATATATTCATATTTC 58.260 33.333 0.00 0.00 0.00 2.17
192 193 8.739972 GGCCGTTTTCCATATATTCATATTTCT 58.260 33.333 0.00 0.00 0.00 2.52
220 221 9.537848 GTATCAGTTTATTTAGAACAAACCACG 57.462 33.333 0.00 0.00 33.58 4.94
221 222 7.556733 TCAGTTTATTTAGAACAAACCACGT 57.443 32.000 0.00 0.00 33.58 4.49
222 223 8.659925 TCAGTTTATTTAGAACAAACCACGTA 57.340 30.769 0.00 0.00 33.58 3.57
223 224 9.107177 TCAGTTTATTTAGAACAAACCACGTAA 57.893 29.630 0.00 0.00 33.58 3.18
224 225 9.887406 CAGTTTATTTAGAACAAACCACGTAAT 57.113 29.630 0.00 0.00 33.58 1.89
227 228 9.896263 TTTATTTAGAACAAACCACGTAATTCC 57.104 29.630 0.00 0.00 0.00 3.01
228 229 6.939132 TTTAGAACAAACCACGTAATTCCA 57.061 33.333 0.00 0.00 0.00 3.53
229 230 7.513371 TTTAGAACAAACCACGTAATTCCAT 57.487 32.000 0.00 0.00 0.00 3.41
230 231 5.622770 AGAACAAACCACGTAATTCCATC 57.377 39.130 0.00 0.00 0.00 3.51
231 232 5.067273 AGAACAAACCACGTAATTCCATCA 58.933 37.500 0.00 0.00 0.00 3.07
232 233 4.759516 ACAAACCACGTAATTCCATCAC 57.240 40.909 0.00 0.00 0.00 3.06
233 234 3.187637 ACAAACCACGTAATTCCATCACG 59.812 43.478 0.00 0.00 41.32 4.35
234 235 3.322211 AACCACGTAATTCCATCACGA 57.678 42.857 4.79 0.00 38.96 4.35
235 236 3.322211 ACCACGTAATTCCATCACGAA 57.678 42.857 4.79 0.00 38.96 3.85
236 237 3.259064 ACCACGTAATTCCATCACGAAG 58.741 45.455 4.79 0.00 38.96 3.79
237 238 3.056393 ACCACGTAATTCCATCACGAAGA 60.056 43.478 4.79 0.00 38.96 2.87
238 239 3.930229 CCACGTAATTCCATCACGAAGAA 59.070 43.478 4.79 0.00 38.96 2.52
239 240 4.032900 CCACGTAATTCCATCACGAAGAAG 59.967 45.833 4.79 0.00 38.96 2.85
240 241 4.032900 CACGTAATTCCATCACGAAGAAGG 59.967 45.833 4.79 0.00 38.96 3.46
241 242 4.081862 ACGTAATTCCATCACGAAGAAGGA 60.082 41.667 4.79 0.00 42.12 3.36
242 243 5.050490 CGTAATTCCATCACGAAGAAGGAT 58.950 41.667 7.26 0.00 43.21 3.24
243 244 6.183360 ACGTAATTCCATCACGAAGAAGGATA 60.183 38.462 4.79 0.00 43.21 2.59
244 245 6.700081 CGTAATTCCATCACGAAGAAGGATAA 59.300 38.462 7.26 0.00 43.21 1.75
245 246 7.096023 CGTAATTCCATCACGAAGAAGGATAAG 60.096 40.741 7.26 0.00 43.21 1.73
246 247 5.932619 TTCCATCACGAAGAAGGATAAGA 57.067 39.130 7.26 0.00 43.21 2.10
247 248 5.932619 TCCATCACGAAGAAGGATAAGAA 57.067 39.130 0.00 0.00 39.12 2.52
248 249 5.907207 TCCATCACGAAGAAGGATAAGAAG 58.093 41.667 0.00 0.00 39.12 2.85
249 250 5.053145 CCATCACGAAGAAGGATAAGAAGG 58.947 45.833 0.00 0.00 37.28 3.46
250 251 5.163405 CCATCACGAAGAAGGATAAGAAGGA 60.163 44.000 0.00 0.00 37.28 3.36
251 252 6.463614 CCATCACGAAGAAGGATAAGAAGGAT 60.464 42.308 0.00 0.00 37.28 3.24
252 253 5.907207 TCACGAAGAAGGATAAGAAGGATG 58.093 41.667 0.00 0.00 0.00 3.51
253 254 5.053145 CACGAAGAAGGATAAGAAGGATGG 58.947 45.833 0.00 0.00 0.00 3.51
254 255 4.101741 ACGAAGAAGGATAAGAAGGATGGG 59.898 45.833 0.00 0.00 0.00 4.00
255 256 4.101741 CGAAGAAGGATAAGAAGGATGGGT 59.898 45.833 0.00 0.00 0.00 4.51
256 257 5.372373 GAAGAAGGATAAGAAGGATGGGTG 58.628 45.833 0.00 0.00 0.00 4.61
257 258 3.137360 AGAAGGATAAGAAGGATGGGTGC 59.863 47.826 0.00 0.00 0.00 5.01
258 259 1.417890 AGGATAAGAAGGATGGGTGCG 59.582 52.381 0.00 0.00 0.00 5.34
259 260 1.543429 GGATAAGAAGGATGGGTGCGG 60.543 57.143 0.00 0.00 0.00 5.69
260 261 0.179018 ATAAGAAGGATGGGTGCGGC 60.179 55.000 0.00 0.00 0.00 6.53
261 262 1.558167 TAAGAAGGATGGGTGCGGCA 61.558 55.000 0.00 0.00 0.00 5.69
262 263 2.361104 GAAGGATGGGTGCGGCAA 60.361 61.111 3.23 0.00 0.00 4.52
263 264 1.754234 GAAGGATGGGTGCGGCAAT 60.754 57.895 3.23 0.00 0.00 3.56
264 265 0.465460 GAAGGATGGGTGCGGCAATA 60.465 55.000 3.23 0.00 0.00 1.90
265 266 0.185901 AAGGATGGGTGCGGCAATAT 59.814 50.000 3.23 0.00 0.00 1.28
266 267 1.064003 AGGATGGGTGCGGCAATATA 58.936 50.000 3.23 0.00 0.00 0.86
267 268 1.165270 GGATGGGTGCGGCAATATAC 58.835 55.000 3.23 0.00 0.00 1.47
268 269 1.544537 GGATGGGTGCGGCAATATACA 60.545 52.381 3.23 0.00 0.00 2.29
269 270 1.535462 GATGGGTGCGGCAATATACAC 59.465 52.381 3.23 0.00 0.00 2.90
270 271 0.544223 TGGGTGCGGCAATATACACT 59.456 50.000 3.23 0.00 33.53 3.55
271 272 1.763545 TGGGTGCGGCAATATACACTA 59.236 47.619 3.23 0.00 33.53 2.74
272 273 2.140717 GGGTGCGGCAATATACACTAC 58.859 52.381 3.23 0.00 33.53 2.73
273 274 2.224209 GGGTGCGGCAATATACACTACT 60.224 50.000 3.23 0.00 33.53 2.57
274 275 3.463944 GGTGCGGCAATATACACTACTT 58.536 45.455 3.23 0.00 33.53 2.24
275 276 3.875134 GGTGCGGCAATATACACTACTTT 59.125 43.478 3.23 0.00 33.53 2.66
276 277 4.260620 GGTGCGGCAATATACACTACTTTG 60.261 45.833 3.23 0.00 33.53 2.77
277 278 4.569162 GTGCGGCAATATACACTACTTTGA 59.431 41.667 3.23 0.00 0.00 2.69
278 279 5.064198 GTGCGGCAATATACACTACTTTGAA 59.936 40.000 3.23 0.00 0.00 2.69
279 280 5.293324 TGCGGCAATATACACTACTTTGAAG 59.707 40.000 0.00 0.00 0.00 3.02
280 281 5.522460 GCGGCAATATACACTACTTTGAAGA 59.478 40.000 0.00 0.00 0.00 2.87
281 282 6.509677 GCGGCAATATACACTACTTTGAAGAC 60.510 42.308 0.00 0.00 0.00 3.01
282 283 6.533723 CGGCAATATACACTACTTTGAAGACA 59.466 38.462 0.00 0.00 0.00 3.41
283 284 7.064134 CGGCAATATACACTACTTTGAAGACAA 59.936 37.037 0.00 0.00 0.00 3.18
284 285 8.726988 GGCAATATACACTACTTTGAAGACAAA 58.273 33.333 0.00 0.00 42.66 2.83
285 286 9.543018 GCAATATACACTACTTTGAAGACAAAC 57.457 33.333 0.00 0.00 40.47 2.93
344 345 8.447833 TCTAGCAGTTTATTGTAAAAATGGACG 58.552 33.333 0.00 0.00 35.54 4.79
345 346 6.386654 AGCAGTTTATTGTAAAAATGGACGG 58.613 36.000 0.00 0.00 35.54 4.79
346 347 5.575218 GCAGTTTATTGTAAAAATGGACGGG 59.425 40.000 0.00 0.00 35.54 5.28
347 348 5.575218 CAGTTTATTGTAAAAATGGACGGGC 59.425 40.000 0.00 0.00 32.33 6.13
348 349 2.931512 ATTGTAAAAATGGACGGGCG 57.068 45.000 0.00 0.00 0.00 6.13
349 350 0.241481 TTGTAAAAATGGACGGGCGC 59.759 50.000 0.00 0.00 0.00 6.53
350 351 1.226184 GTAAAAATGGACGGGCGCG 60.226 57.895 22.69 22.69 0.00 6.86
351 352 2.400158 TAAAAATGGACGGGCGCGG 61.400 57.895 27.52 9.49 0.00 6.46
368 369 4.719616 GCAACGTGCGCCTTCGAC 62.720 66.667 19.89 4.39 38.10 4.20
369 370 4.409588 CAACGTGCGCCTTCGACG 62.410 66.667 19.89 17.47 41.42 5.12
370 371 4.634133 AACGTGCGCCTTCGACGA 62.634 61.111 21.86 0.00 39.63 4.20
371 372 3.909258 AACGTGCGCCTTCGACGAT 62.909 57.895 21.86 9.01 39.63 3.73
372 373 3.607987 CGTGCGCCTTCGACGATC 61.608 66.667 11.33 0.00 39.63 3.69
373 374 3.255379 GTGCGCCTTCGACGATCC 61.255 66.667 4.18 0.00 38.10 3.36
374 375 3.754530 TGCGCCTTCGACGATCCA 61.755 61.111 4.18 0.00 38.10 3.41
375 376 2.956964 GCGCCTTCGACGATCCAG 60.957 66.667 0.00 0.00 38.10 3.86
379 380 0.389948 GCCTTCGACGATCCAGTTGT 60.390 55.000 0.00 0.00 0.00 3.32
383 384 3.254060 CTTCGACGATCCAGTTGTTGAT 58.746 45.455 0.00 0.00 35.07 2.57
384 385 4.421058 CTTCGACGATCCAGTTGTTGATA 58.579 43.478 0.00 0.00 35.07 2.15
394 395 5.305585 TCCAGTTGTTGATAAGGTGTTCTC 58.694 41.667 0.00 0.00 0.00 2.87
399 400 5.304686 TGTTGATAAGGTGTTCTCCAAGT 57.695 39.130 0.00 0.00 0.00 3.16
410 411 0.601558 TCTCCAAGTCGTCGAAAGGG 59.398 55.000 0.00 0.00 0.00 3.95
418 419 2.624838 AGTCGTCGAAAGGGACAAGTTA 59.375 45.455 0.00 0.00 37.40 2.24
419 420 2.728318 GTCGTCGAAAGGGACAAGTTAC 59.272 50.000 0.00 0.00 36.73 2.50
422 423 3.324117 GTCGAAAGGGACAAGTTACCTC 58.676 50.000 0.00 0.00 36.91 3.85
437 438 6.121776 AGTTACCTCATGTATTTGTCCACA 57.878 37.500 0.00 0.00 0.00 4.17
491 495 1.428448 ACATCCATGTGTTCGTGTCG 58.572 50.000 0.00 0.00 40.03 4.35
494 498 3.119280 ACATCCATGTGTTCGTGTCGATA 60.119 43.478 0.00 0.00 40.03 2.92
498 502 4.565166 TCCATGTGTTCGTGTCGATATTTC 59.435 41.667 0.00 0.00 35.23 2.17
501 505 6.402118 CCATGTGTTCGTGTCGATATTTCTTT 60.402 38.462 0.00 0.00 35.23 2.52
511 515 9.685005 CGTGTCGATATTTCTTTAAGTTTTAGG 57.315 33.333 0.00 0.00 0.00 2.69
565 569 3.740115 TGAGTTTAGTTTCACTGGAGCC 58.260 45.455 0.00 0.00 0.00 4.70
570 574 2.031495 AGTTTCACTGGAGCCTAGGT 57.969 50.000 11.31 0.00 0.00 3.08
571 575 1.903183 AGTTTCACTGGAGCCTAGGTC 59.097 52.381 11.31 6.72 0.00 3.85
572 576 0.895530 TTTCACTGGAGCCTAGGTCG 59.104 55.000 11.31 0.00 0.00 4.79
615 630 0.322098 CACCGCCCACACAATAGGAA 60.322 55.000 0.00 0.00 0.00 3.36
618 633 1.889829 CCGCCCACACAATAGGAAAAA 59.110 47.619 0.00 0.00 0.00 1.94
643 658 2.770164 GCAAAGAGCCTCTTCTACCA 57.230 50.000 7.56 0.00 35.27 3.25
644 659 2.626840 GCAAAGAGCCTCTTCTACCAG 58.373 52.381 7.56 0.00 35.27 4.00
646 661 1.199615 AAGAGCCTCTTCTACCAGCC 58.800 55.000 0.00 0.00 28.99 4.85
647 662 1.040339 AGAGCCTCTTCTACCAGCCG 61.040 60.000 0.00 0.00 0.00 5.52
648 663 2.202946 GCCTCTTCTACCAGCCGC 60.203 66.667 0.00 0.00 0.00 6.53
651 666 3.432051 CTCTTCTACCAGCCGCCGG 62.432 68.421 0.00 0.00 0.00 6.13
695 710 0.104777 TCTCTCCCCATCCATCCAGG 60.105 60.000 0.00 0.00 39.47 4.45
940 970 4.415332 GAGCCGCGACCTCGAACA 62.415 66.667 8.23 0.00 43.02 3.18
941 971 4.421479 AGCCGCGACCTCGAACAG 62.421 66.667 8.23 0.00 43.02 3.16
1065 1563 4.537433 GGAATCAGCGCGCTCCCT 62.537 66.667 34.28 18.37 0.00 4.20
1080 1578 1.229658 CCCTGACCACCTCCTCCTT 60.230 63.158 0.00 0.00 0.00 3.36
1316 1814 0.528470 CTCAAGGTCCTCGTCCTCAC 59.472 60.000 0.00 0.00 33.76 3.51
1343 1841 1.186267 ACGTCTTCCCCTCACCTGAC 61.186 60.000 0.00 0.00 0.00 3.51
1360 1858 2.844362 CCTCCATAGGCCGCCTCA 60.844 66.667 17.40 2.95 35.64 3.86
1384 1882 3.512516 GCATCGTCAGCTTGGGCC 61.513 66.667 0.00 0.00 39.73 5.80
1386 1884 2.110967 CATCGTCAGCTTGGGCCAG 61.111 63.158 6.23 2.11 39.73 4.85
1415 1913 2.101415 GCCTTGAGTTTTGCATATCCCC 59.899 50.000 0.00 0.00 0.00 4.81
1419 1917 1.101049 AGTTTTGCATATCCCCGCCG 61.101 55.000 0.00 0.00 0.00 6.46
1420 1918 1.826054 TTTTGCATATCCCCGCCGG 60.826 57.895 0.00 0.00 0.00 6.13
1446 1944 2.053865 CCCGCTGGGCATCAACATT 61.054 57.895 0.56 0.00 35.35 2.71
1491 1989 2.203877 TCCCGTGCCTACCCAGTT 60.204 61.111 0.00 0.00 0.00 3.16
1500 1998 0.108138 CCTACCCAGTTGCCTTCTCG 60.108 60.000 0.00 0.00 0.00 4.04
1532 2030 3.369147 ACGCTTATGCTCGAATATCATGC 59.631 43.478 0.00 0.00 36.97 4.06
1545 2043 5.916883 CGAATATCATGCTTTTGGACATTCC 59.083 40.000 0.00 0.00 36.96 3.01
1547 2045 2.789213 TCATGCTTTTGGACATTCCGA 58.211 42.857 0.00 0.00 40.17 4.55
1675 2390 1.431440 CTCCAGGAGCTCGAGTTCG 59.569 63.158 21.04 9.71 41.45 3.95
1973 2701 6.690194 AAATCTTCTGCATCTTCATACCAC 57.310 37.500 0.00 0.00 0.00 4.16
2103 2835 2.027688 GTGCGTCTTTTCGGTATCTTCG 59.972 50.000 0.00 0.00 0.00 3.79
2311 3077 9.533831 AAGTTAATCTAATTTCCAACCACTCAT 57.466 29.630 0.00 0.00 0.00 2.90
2345 3111 9.673454 TCACAAATACTATAAGTAGTGCATACG 57.327 33.333 0.00 0.00 41.22 3.06
2463 3354 9.130661 TGTCATATGTTTTTCTTGAAAAGGAGA 57.869 29.630 1.90 0.00 46.24 3.71
2464 3355 9.617975 GTCATATGTTTTTCTTGAAAAGGAGAG 57.382 33.333 1.90 1.30 46.24 3.20
2465 3356 9.354673 TCATATGTTTTTCTTGAAAAGGAGAGT 57.645 29.630 1.90 0.00 46.24 3.24
2601 3520 7.886970 AGAAGCATATTCATGTGCCATACTTAT 59.113 33.333 5.01 0.00 44.71 1.73
2650 3577 9.762381 TGAAAAGTATATAGGGGTGTCAAAAAT 57.238 29.630 0.00 0.00 0.00 1.82
2660 3587 6.435164 AGGGGTGTCAAAAATGCTCTTATAT 58.565 36.000 0.00 0.00 0.00 0.86
2661 3588 6.897413 AGGGGTGTCAAAAATGCTCTTATATT 59.103 34.615 0.00 0.00 0.00 1.28
2662 3589 8.058847 AGGGGTGTCAAAAATGCTCTTATATTA 58.941 33.333 0.00 0.00 0.00 0.98
2663 3590 8.860088 GGGGTGTCAAAAATGCTCTTATATTAT 58.140 33.333 0.00 0.00 0.00 1.28
2664 3591 9.683069 GGGTGTCAAAAATGCTCTTATATTATG 57.317 33.333 0.00 0.00 0.00 1.90
2665 3592 9.683069 GGTGTCAAAAATGCTCTTATATTATGG 57.317 33.333 0.00 0.00 0.00 2.74
2666 3593 9.683069 GTGTCAAAAATGCTCTTATATTATGGG 57.317 33.333 0.00 0.00 0.00 4.00
2667 3594 9.639563 TGTCAAAAATGCTCTTATATTATGGGA 57.360 29.630 0.00 0.00 0.00 4.37
2668 3595 9.899226 GTCAAAAATGCTCTTATATTATGGGAC 57.101 33.333 0.00 0.00 0.00 4.46
2669 3596 8.783093 TCAAAAATGCTCTTATATTATGGGACG 58.217 33.333 0.00 0.00 0.00 4.79
2670 3597 7.687941 AAAATGCTCTTATATTATGGGACGG 57.312 36.000 0.00 0.00 0.00 4.79
2671 3598 6.620877 AATGCTCTTATATTATGGGACGGA 57.379 37.500 0.00 0.00 0.00 4.69
2672 3599 5.661056 TGCTCTTATATTATGGGACGGAG 57.339 43.478 0.00 0.00 0.00 4.63
2673 3600 4.466370 TGCTCTTATATTATGGGACGGAGG 59.534 45.833 0.00 0.00 0.00 4.30
2674 3601 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
2675 3602 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
2676 3603 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2720 3649 0.111639 TTGTCCTTAGGGTTGGTGGC 59.888 55.000 0.00 0.00 0.00 5.01
2819 3752 0.667792 GACAGTGCCGAGAAGACCAC 60.668 60.000 0.00 0.00 0.00 4.16
2823 3756 0.741221 GTGCCGAGAAGACCACCATC 60.741 60.000 0.00 0.00 0.00 3.51
2824 3757 1.191489 TGCCGAGAAGACCACCATCA 61.191 55.000 0.00 0.00 0.00 3.07
2983 3916 2.126346 GTGAAAGCCCATGCACGC 60.126 61.111 0.00 0.00 41.13 5.34
3163 4109 0.179197 CAGCAGCTTGAGCAATGACG 60.179 55.000 5.70 0.00 45.16 4.35
3164 4110 0.604780 AGCAGCTTGAGCAATGACGT 60.605 50.000 5.70 0.00 45.16 4.34
3189 4143 5.352016 TGGGTCGGTTGTAATTCTAATTTCG 59.648 40.000 0.00 0.00 0.00 3.46
3236 4190 0.391130 GCAGTGTGGACCTCGCAATA 60.391 55.000 9.63 0.00 37.65 1.90
3351 4305 6.621316 TTTTCAGTTTACCGAGTAATTGCA 57.379 33.333 0.00 0.00 0.00 4.08
3423 4387 6.611613 TCCTGATGAAGTTGTCTAGTCAAT 57.388 37.500 5.70 0.00 0.00 2.57
3424 4388 7.718334 TCCTGATGAAGTTGTCTAGTCAATA 57.282 36.000 5.70 0.00 0.00 1.90
3670 4966 7.697691 ACCAATGTCGATGATAAATTTCAGAC 58.302 34.615 0.00 0.00 0.00 3.51
3725 5021 1.288752 GCCTTTTGCTTTAGCCGCA 59.711 52.632 0.00 0.00 41.18 5.69
3728 5024 1.000274 CCTTTTGCTTTAGCCGCACTT 60.000 47.619 0.00 0.00 41.18 3.16
3757 5053 5.654650 AGTGTTCAAAGGTAACATTCCACAA 59.345 36.000 0.00 0.00 38.95 3.33
3784 5080 2.700773 GCACCCGGAGTTGCCAATC 61.701 63.158 0.73 0.00 35.94 2.67
3842 5207 0.823356 GTTGCCTCAAGGAGCCAACA 60.823 55.000 13.32 0.00 36.41 3.33
3908 5290 5.238583 GTTGGACTTGCACTATAGACTTGT 58.761 41.667 6.78 0.00 0.00 3.16
4085 5483 5.163509 CGAGAGGACCATCATGAAGTCTTTA 60.164 44.000 21.82 0.00 0.00 1.85
4092 5490 8.186821 GGACCATCATGAAGTCTTTATTTTCTG 58.813 37.037 21.82 3.44 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.580867 GTCCAGCTAGCGTGCTCG 60.581 66.667 9.55 3.31 41.98 5.03
10 11 2.202810 GGTCCAGCTAGCGTGCTC 60.203 66.667 9.55 0.42 41.98 4.26
11 12 4.135153 CGGTCCAGCTAGCGTGCT 62.135 66.667 9.55 0.00 45.18 4.40
12 13 4.129737 TCGGTCCAGCTAGCGTGC 62.130 66.667 9.55 1.09 41.00 5.34
13 14 2.202623 GTCGGTCCAGCTAGCGTG 60.203 66.667 9.55 8.06 41.00 5.34
14 15 3.450115 GGTCGGTCCAGCTAGCGT 61.450 66.667 9.55 0.00 41.00 5.07
15 16 4.208686 GGGTCGGTCCAGCTAGCG 62.209 72.222 9.55 4.28 41.54 4.26
16 17 3.075005 TGGGTCGGTCCAGCTAGC 61.075 66.667 6.62 6.62 38.11 3.42
17 18 1.982395 TGTGGGTCGGTCCAGCTAG 60.982 63.158 0.00 0.00 37.50 3.42
18 19 2.118732 TGTGGGTCGGTCCAGCTA 59.881 61.111 0.00 0.00 37.50 3.32
19 20 3.626924 GTGTGGGTCGGTCCAGCT 61.627 66.667 0.00 0.00 37.50 4.24
21 22 3.282745 CTCGTGTGGGTCGGTCCAG 62.283 68.421 0.00 0.00 37.50 3.86
22 23 3.299977 CTCGTGTGGGTCGGTCCA 61.300 66.667 0.00 0.00 38.11 4.02
23 24 4.065281 CCTCGTGTGGGTCGGTCC 62.065 72.222 0.00 0.00 0.00 4.46
24 25 4.736896 GCCTCGTGTGGGTCGGTC 62.737 72.222 0.00 0.00 0.00 4.79
26 27 4.742201 CAGCCTCGTGTGGGTCGG 62.742 72.222 0.00 0.00 35.37 4.79
27 28 3.515316 AACAGCCTCGTGTGGGTCG 62.515 63.158 0.00 0.00 35.37 4.79
28 29 1.961277 CAACAGCCTCGTGTGGGTC 60.961 63.158 0.00 0.00 35.37 4.46
29 30 1.404479 TACAACAGCCTCGTGTGGGT 61.404 55.000 0.00 0.00 38.51 4.51
30 31 0.250124 TTACAACAGCCTCGTGTGGG 60.250 55.000 0.00 0.00 0.00 4.61
31 32 1.148310 CTTACAACAGCCTCGTGTGG 58.852 55.000 0.00 0.00 0.00 4.17
32 33 0.512952 GCTTACAACAGCCTCGTGTG 59.487 55.000 0.00 0.00 33.21 3.82
33 34 0.105964 TGCTTACAACAGCCTCGTGT 59.894 50.000 0.00 0.00 39.25 4.49
34 35 0.512952 GTGCTTACAACAGCCTCGTG 59.487 55.000 0.00 0.00 39.25 4.35
35 36 0.602905 GGTGCTTACAACAGCCTCGT 60.603 55.000 0.00 0.00 39.25 4.18
36 37 0.602638 TGGTGCTTACAACAGCCTCG 60.603 55.000 0.00 0.00 39.04 4.63
37 38 3.322514 TGGTGCTTACAACAGCCTC 57.677 52.632 0.00 0.00 39.04 4.70
42 43 1.066908 GCTTTGCTGGTGCTTACAACA 59.933 47.619 0.00 0.00 42.67 3.33
43 44 1.770957 GCTTTGCTGGTGCTTACAAC 58.229 50.000 0.00 0.00 40.48 3.32
44 45 0.310543 CGCTTTGCTGGTGCTTACAA 59.689 50.000 0.00 0.00 40.48 2.41
45 46 0.533978 TCGCTTTGCTGGTGCTTACA 60.534 50.000 0.00 0.00 40.48 2.41
46 47 0.591170 TTCGCTTTGCTGGTGCTTAC 59.409 50.000 0.00 0.00 40.48 2.34
47 48 0.591170 GTTCGCTTTGCTGGTGCTTA 59.409 50.000 0.00 0.00 40.48 3.09
48 49 1.360192 GTTCGCTTTGCTGGTGCTT 59.640 52.632 0.00 0.00 40.48 3.91
49 50 2.896801 CGTTCGCTTTGCTGGTGCT 61.897 57.895 0.00 0.00 40.48 4.40
50 51 2.427410 CGTTCGCTTTGCTGGTGC 60.427 61.111 0.00 0.00 40.20 5.01
51 52 2.252260 CCGTTCGCTTTGCTGGTG 59.748 61.111 0.00 0.00 0.00 4.17
52 53 2.978010 CCCGTTCGCTTTGCTGGT 60.978 61.111 0.00 0.00 0.00 4.00
53 54 2.668212 TCCCGTTCGCTTTGCTGG 60.668 61.111 0.00 0.00 0.00 4.85
54 55 2.556287 GTCCCGTTCGCTTTGCTG 59.444 61.111 0.00 0.00 0.00 4.41
55 56 2.668550 GGTCCCGTTCGCTTTGCT 60.669 61.111 0.00 0.00 0.00 3.91
56 57 2.791501 TAGGGTCCCGTTCGCTTTGC 62.792 60.000 0.99 0.00 0.00 3.68
57 58 0.320946 TTAGGGTCCCGTTCGCTTTG 60.321 55.000 0.99 0.00 0.00 2.77
58 59 0.036671 CTTAGGGTCCCGTTCGCTTT 60.037 55.000 0.99 0.00 0.00 3.51
59 60 1.595357 CTTAGGGTCCCGTTCGCTT 59.405 57.895 0.99 0.00 0.00 4.68
60 61 2.356780 CCTTAGGGTCCCGTTCGCT 61.357 63.158 0.99 0.00 0.00 4.93
61 62 2.186125 CCTTAGGGTCCCGTTCGC 59.814 66.667 0.99 0.00 0.00 4.70
62 63 2.186125 GCCTTAGGGTCCCGTTCG 59.814 66.667 0.99 0.00 34.45 3.95
63 64 1.078637 GTGCCTTAGGGTCCCGTTC 60.079 63.158 0.99 0.00 34.45 3.95
64 65 2.599757 GGTGCCTTAGGGTCCCGTT 61.600 63.158 0.99 0.00 34.45 4.44
65 66 3.007323 GGTGCCTTAGGGTCCCGT 61.007 66.667 0.99 0.00 34.45 5.28
66 67 2.132089 TTTGGTGCCTTAGGGTCCCG 62.132 60.000 0.99 0.00 34.45 5.14
67 68 0.323451 CTTTGGTGCCTTAGGGTCCC 60.323 60.000 0.00 0.00 34.45 4.46
68 69 0.696501 TCTTTGGTGCCTTAGGGTCC 59.303 55.000 0.00 0.00 34.45 4.46
69 70 1.340114 CCTCTTTGGTGCCTTAGGGTC 60.340 57.143 0.00 0.00 34.45 4.46
70 71 0.698818 CCTCTTTGGTGCCTTAGGGT 59.301 55.000 0.00 0.00 34.45 4.34
71 72 0.991920 TCCTCTTTGGTGCCTTAGGG 59.008 55.000 0.00 0.00 37.07 3.53
72 73 2.025887 ACATCCTCTTTGGTGCCTTAGG 60.026 50.000 0.00 0.00 37.07 2.69
73 74 3.054802 AGACATCCTCTTTGGTGCCTTAG 60.055 47.826 0.00 0.00 37.07 2.18
74 75 2.912956 AGACATCCTCTTTGGTGCCTTA 59.087 45.455 0.00 0.00 37.07 2.69
75 76 1.707427 AGACATCCTCTTTGGTGCCTT 59.293 47.619 0.00 0.00 37.07 4.35
76 77 1.366319 AGACATCCTCTTTGGTGCCT 58.634 50.000 0.00 0.00 37.07 4.75
77 78 1.815003 CAAGACATCCTCTTTGGTGCC 59.185 52.381 0.00 0.00 37.08 5.01
78 79 2.508526 ACAAGACATCCTCTTTGGTGC 58.491 47.619 0.00 0.00 37.08 5.01
79 80 5.180117 CAGTAACAAGACATCCTCTTTGGTG 59.820 44.000 0.00 0.00 37.08 4.17
80 81 5.308825 CAGTAACAAGACATCCTCTTTGGT 58.691 41.667 0.00 0.00 37.08 3.67
81 82 4.697352 CCAGTAACAAGACATCCTCTTTGG 59.303 45.833 0.00 0.00 37.08 3.28
82 83 4.154918 GCCAGTAACAAGACATCCTCTTTG 59.845 45.833 0.00 0.00 37.08 2.77
83 84 4.327680 GCCAGTAACAAGACATCCTCTTT 58.672 43.478 0.00 0.00 37.08 2.52
84 85 3.617531 CGCCAGTAACAAGACATCCTCTT 60.618 47.826 0.00 0.00 40.13 2.85
85 86 2.093973 CGCCAGTAACAAGACATCCTCT 60.094 50.000 0.00 0.00 0.00 3.69
86 87 2.271800 CGCCAGTAACAAGACATCCTC 58.728 52.381 0.00 0.00 0.00 3.71
87 88 1.066143 CCGCCAGTAACAAGACATCCT 60.066 52.381 0.00 0.00 0.00 3.24
88 89 1.338769 ACCGCCAGTAACAAGACATCC 60.339 52.381 0.00 0.00 0.00 3.51
89 90 2.094762 ACCGCCAGTAACAAGACATC 57.905 50.000 0.00 0.00 0.00 3.06
90 91 3.906720 ATACCGCCAGTAACAAGACAT 57.093 42.857 0.00 0.00 33.70 3.06
91 92 3.688694 AATACCGCCAGTAACAAGACA 57.311 42.857 0.00 0.00 33.70 3.41
92 93 5.503520 GCAATAATACCGCCAGTAACAAGAC 60.504 44.000 0.00 0.00 33.70 3.01
93 94 4.573201 GCAATAATACCGCCAGTAACAAGA 59.427 41.667 0.00 0.00 33.70 3.02
94 95 4.261031 GGCAATAATACCGCCAGTAACAAG 60.261 45.833 0.00 0.00 45.52 3.16
95 96 3.628487 GGCAATAATACCGCCAGTAACAA 59.372 43.478 0.00 0.00 45.52 2.83
96 97 3.207778 GGCAATAATACCGCCAGTAACA 58.792 45.455 0.00 0.00 45.52 2.41
97 98 3.891056 GGCAATAATACCGCCAGTAAC 57.109 47.619 0.00 0.00 45.52 2.50
103 104 0.893727 CCCTGGGCAATAATACCGCC 60.894 60.000 0.00 0.00 45.47 6.13
104 105 0.893727 CCCCTGGGCAATAATACCGC 60.894 60.000 7.39 0.00 0.00 5.68
105 106 0.476771 ACCCCTGGGCAATAATACCG 59.523 55.000 7.39 0.00 39.32 4.02
106 107 1.995376 CACCCCTGGGCAATAATACC 58.005 55.000 7.39 0.00 39.32 2.73
107 108 1.328279 GCACCCCTGGGCAATAATAC 58.672 55.000 7.39 0.00 39.32 1.89
108 109 0.187361 GGCACCCCTGGGCAATAATA 59.813 55.000 7.39 0.00 39.32 0.98
109 110 1.075301 GGCACCCCTGGGCAATAAT 60.075 57.895 7.39 0.00 39.32 1.28
110 111 1.809939 AAGGCACCCCTGGGCAATAA 61.810 55.000 7.39 0.00 41.90 1.40
111 112 1.809939 AAAGGCACCCCTGGGCAATA 61.810 55.000 7.39 0.00 41.90 1.90
112 113 3.178509 AAAGGCACCCCTGGGCAAT 62.179 57.895 7.39 0.00 41.90 3.56
113 114 3.826265 GAAAGGCACCCCTGGGCAA 62.826 63.158 7.39 0.00 41.90 4.52
114 115 4.299796 GAAAGGCACCCCTGGGCA 62.300 66.667 7.39 0.00 41.90 5.36
115 116 3.529835 AAGAAAGGCACCCCTGGGC 62.530 63.158 7.39 0.00 41.90 5.36
116 117 1.304464 GAAGAAAGGCACCCCTGGG 60.304 63.158 5.50 5.50 41.90 4.45
117 118 0.322906 GAGAAGAAAGGCACCCCTGG 60.323 60.000 0.00 0.00 41.90 4.45
118 119 0.695347 AGAGAAGAAAGGCACCCCTG 59.305 55.000 0.00 0.00 41.90 4.45
119 120 2.192263 CTAGAGAAGAAAGGCACCCCT 58.808 52.381 0.00 0.00 45.77 4.79
120 121 1.407575 GCTAGAGAAGAAAGGCACCCC 60.408 57.143 0.00 0.00 0.00 4.95
121 122 1.557371 AGCTAGAGAAGAAAGGCACCC 59.443 52.381 0.00 0.00 0.00 4.61
122 123 2.027653 ACAGCTAGAGAAGAAAGGCACC 60.028 50.000 0.00 0.00 0.00 5.01
123 124 3.258228 GACAGCTAGAGAAGAAAGGCAC 58.742 50.000 0.00 0.00 0.00 5.01
124 125 2.094494 CGACAGCTAGAGAAGAAAGGCA 60.094 50.000 0.00 0.00 0.00 4.75
125 126 2.535331 CGACAGCTAGAGAAGAAAGGC 58.465 52.381 0.00 0.00 0.00 4.35
126 127 2.737039 GCCGACAGCTAGAGAAGAAAGG 60.737 54.545 0.00 0.00 38.99 3.11
127 128 2.535331 GCCGACAGCTAGAGAAGAAAG 58.465 52.381 0.00 0.00 38.99 2.62
128 129 1.204941 GGCCGACAGCTAGAGAAGAAA 59.795 52.381 0.00 0.00 43.05 2.52
129 130 0.818296 GGCCGACAGCTAGAGAAGAA 59.182 55.000 0.00 0.00 43.05 2.52
130 131 1.038130 GGGCCGACAGCTAGAGAAGA 61.038 60.000 0.00 0.00 43.05 2.87
131 132 1.323271 TGGGCCGACAGCTAGAGAAG 61.323 60.000 0.00 0.00 43.05 2.85
132 133 0.902984 TTGGGCCGACAGCTAGAGAA 60.903 55.000 0.00 0.00 43.05 2.87
133 134 1.304962 TTGGGCCGACAGCTAGAGA 60.305 57.895 0.00 0.00 43.05 3.10
134 135 1.142748 CTTGGGCCGACAGCTAGAG 59.857 63.158 0.00 0.00 43.05 2.43
135 136 0.323999 TACTTGGGCCGACAGCTAGA 60.324 55.000 0.00 0.00 43.05 2.43
136 137 0.103208 CTACTTGGGCCGACAGCTAG 59.897 60.000 0.00 0.00 43.05 3.42
137 138 1.327690 CCTACTTGGGCCGACAGCTA 61.328 60.000 0.00 0.00 43.05 3.32
138 139 2.660064 CCTACTTGGGCCGACAGCT 61.660 63.158 0.00 0.00 43.05 4.24
139 140 2.125106 CCTACTTGGGCCGACAGC 60.125 66.667 0.00 0.00 42.60 4.40
140 141 2.125106 GCCTACTTGGGCCGACAG 60.125 66.667 0.00 0.00 45.92 3.51
147 148 4.489771 CGGGCCAGCCTACTTGGG 62.490 72.222 4.39 0.00 36.19 4.12
148 149 3.391665 CTCGGGCCAGCCTACTTGG 62.392 68.421 4.39 0.00 38.78 3.61
149 150 2.187946 CTCGGGCCAGCCTACTTG 59.812 66.667 4.39 0.00 36.10 3.16
150 151 3.083997 CCTCGGGCCAGCCTACTT 61.084 66.667 4.39 0.00 36.10 2.24
161 162 0.179029 ATATGGAAAACGGCCTCGGG 60.179 55.000 0.00 0.00 41.39 5.14
162 163 2.536761 TATATGGAAAACGGCCTCGG 57.463 50.000 0.00 0.00 41.39 4.63
163 164 4.062293 TGAATATATGGAAAACGGCCTCG 58.938 43.478 0.00 0.00 43.02 4.63
164 165 7.865706 ATATGAATATATGGAAAACGGCCTC 57.134 36.000 0.00 0.00 0.00 4.70
165 166 8.650143 AAATATGAATATATGGAAAACGGCCT 57.350 30.769 0.00 0.00 30.00 5.19
166 167 8.739972 AGAAATATGAATATATGGAAAACGGCC 58.260 33.333 0.00 0.00 30.00 6.13
194 195 9.537848 CGTGGTTTGTTCTAAATAAACTGATAC 57.462 33.333 10.50 5.99 40.83 2.24
195 196 9.275398 ACGTGGTTTGTTCTAAATAAACTGATA 57.725 29.630 10.50 0.00 40.83 2.15
196 197 8.161699 ACGTGGTTTGTTCTAAATAAACTGAT 57.838 30.769 10.50 0.00 40.83 2.90
197 198 7.556733 ACGTGGTTTGTTCTAAATAAACTGA 57.443 32.000 10.50 0.00 40.83 3.41
198 199 9.887406 ATTACGTGGTTTGTTCTAAATAAACTG 57.113 29.630 0.00 5.53 40.83 3.16
201 202 9.896263 GGAATTACGTGGTTTGTTCTAAATAAA 57.104 29.630 0.00 0.00 0.00 1.40
202 203 9.064706 TGGAATTACGTGGTTTGTTCTAAATAA 57.935 29.630 0.00 0.00 0.00 1.40
203 204 8.618702 TGGAATTACGTGGTTTGTTCTAAATA 57.381 30.769 0.00 0.00 0.00 1.40
204 205 7.513371 TGGAATTACGTGGTTTGTTCTAAAT 57.487 32.000 0.00 0.00 0.00 1.40
205 206 6.939132 TGGAATTACGTGGTTTGTTCTAAA 57.061 33.333 0.00 0.00 0.00 1.85
206 207 6.711194 TGATGGAATTACGTGGTTTGTTCTAA 59.289 34.615 0.00 0.00 0.00 2.10
207 208 6.148150 GTGATGGAATTACGTGGTTTGTTCTA 59.852 38.462 0.00 0.00 0.00 2.10
208 209 5.048991 GTGATGGAATTACGTGGTTTGTTCT 60.049 40.000 0.00 0.00 0.00 3.01
209 210 5.151389 GTGATGGAATTACGTGGTTTGTTC 58.849 41.667 0.00 0.00 0.00 3.18
210 211 5.116069 GTGATGGAATTACGTGGTTTGTT 57.884 39.130 0.00 0.00 0.00 2.83
211 212 4.759516 GTGATGGAATTACGTGGTTTGT 57.240 40.909 0.00 0.00 0.00 2.83
226 227 5.053145 CCTTCTTATCCTTCTTCGTGATGG 58.947 45.833 6.72 6.72 40.30 3.51
227 228 5.907207 TCCTTCTTATCCTTCTTCGTGATG 58.093 41.667 0.00 0.00 0.00 3.07
228 229 6.463614 CCATCCTTCTTATCCTTCTTCGTGAT 60.464 42.308 0.00 0.00 0.00 3.06
229 230 5.163405 CCATCCTTCTTATCCTTCTTCGTGA 60.163 44.000 0.00 0.00 0.00 4.35
230 231 5.053145 CCATCCTTCTTATCCTTCTTCGTG 58.947 45.833 0.00 0.00 0.00 4.35
231 232 4.101741 CCCATCCTTCTTATCCTTCTTCGT 59.898 45.833 0.00 0.00 0.00 3.85
232 233 4.101741 ACCCATCCTTCTTATCCTTCTTCG 59.898 45.833 0.00 0.00 0.00 3.79
233 234 5.372373 CACCCATCCTTCTTATCCTTCTTC 58.628 45.833 0.00 0.00 0.00 2.87
234 235 4.385754 GCACCCATCCTTCTTATCCTTCTT 60.386 45.833 0.00 0.00 0.00 2.52
235 236 3.137360 GCACCCATCCTTCTTATCCTTCT 59.863 47.826 0.00 0.00 0.00 2.85
236 237 3.481453 GCACCCATCCTTCTTATCCTTC 58.519 50.000 0.00 0.00 0.00 3.46
237 238 2.158755 CGCACCCATCCTTCTTATCCTT 60.159 50.000 0.00 0.00 0.00 3.36
238 239 1.417890 CGCACCCATCCTTCTTATCCT 59.582 52.381 0.00 0.00 0.00 3.24
239 240 1.543429 CCGCACCCATCCTTCTTATCC 60.543 57.143 0.00 0.00 0.00 2.59
240 241 1.884235 CCGCACCCATCCTTCTTATC 58.116 55.000 0.00 0.00 0.00 1.75
241 242 0.179018 GCCGCACCCATCCTTCTTAT 60.179 55.000 0.00 0.00 0.00 1.73
242 243 1.223487 GCCGCACCCATCCTTCTTA 59.777 57.895 0.00 0.00 0.00 2.10
243 244 2.044946 GCCGCACCCATCCTTCTT 60.045 61.111 0.00 0.00 0.00 2.52
244 245 2.215451 ATTGCCGCACCCATCCTTCT 62.215 55.000 0.00 0.00 0.00 2.85
245 246 0.465460 TATTGCCGCACCCATCCTTC 60.465 55.000 0.00 0.00 0.00 3.46
246 247 0.185901 ATATTGCCGCACCCATCCTT 59.814 50.000 0.00 0.00 0.00 3.36
247 248 1.064003 TATATTGCCGCACCCATCCT 58.936 50.000 0.00 0.00 0.00 3.24
248 249 1.165270 GTATATTGCCGCACCCATCC 58.835 55.000 0.00 0.00 0.00 3.51
249 250 1.535462 GTGTATATTGCCGCACCCATC 59.465 52.381 0.00 0.00 0.00 3.51
250 251 1.142870 AGTGTATATTGCCGCACCCAT 59.857 47.619 0.00 0.00 32.75 4.00
251 252 0.544223 AGTGTATATTGCCGCACCCA 59.456 50.000 0.00 0.00 32.75 4.51
252 253 2.140717 GTAGTGTATATTGCCGCACCC 58.859 52.381 0.00 0.00 32.75 4.61
253 254 3.107642 AGTAGTGTATATTGCCGCACC 57.892 47.619 0.00 0.00 32.75 5.01
254 255 4.569162 TCAAAGTAGTGTATATTGCCGCAC 59.431 41.667 0.00 0.00 0.00 5.34
255 256 4.760878 TCAAAGTAGTGTATATTGCCGCA 58.239 39.130 0.00 0.00 0.00 5.69
256 257 5.522460 TCTTCAAAGTAGTGTATATTGCCGC 59.478 40.000 0.00 0.00 0.00 6.53
257 258 6.533723 TGTCTTCAAAGTAGTGTATATTGCCG 59.466 38.462 0.00 0.00 0.00 5.69
258 259 7.843490 TGTCTTCAAAGTAGTGTATATTGCC 57.157 36.000 0.00 0.00 0.00 4.52
259 260 9.543018 GTTTGTCTTCAAAGTAGTGTATATTGC 57.457 33.333 0.00 0.00 43.04 3.56
318 319 8.447833 CGTCCATTTTTACAATAAACTGCTAGA 58.552 33.333 0.00 0.00 0.00 2.43
319 320 7.696453 CCGTCCATTTTTACAATAAACTGCTAG 59.304 37.037 0.00 0.00 0.00 3.42
320 321 7.362229 CCCGTCCATTTTTACAATAAACTGCTA 60.362 37.037 0.00 0.00 0.00 3.49
321 322 6.386654 CCGTCCATTTTTACAATAAACTGCT 58.613 36.000 0.00 0.00 0.00 4.24
322 323 5.575218 CCCGTCCATTTTTACAATAAACTGC 59.425 40.000 0.00 0.00 0.00 4.40
323 324 5.575218 GCCCGTCCATTTTTACAATAAACTG 59.425 40.000 0.00 0.00 0.00 3.16
324 325 5.620429 CGCCCGTCCATTTTTACAATAAACT 60.620 40.000 0.00 0.00 0.00 2.66
325 326 4.559643 CGCCCGTCCATTTTTACAATAAAC 59.440 41.667 0.00 0.00 0.00 2.01
326 327 4.734917 CGCCCGTCCATTTTTACAATAAA 58.265 39.130 0.00 0.00 0.00 1.40
327 328 3.427773 GCGCCCGTCCATTTTTACAATAA 60.428 43.478 0.00 0.00 0.00 1.40
328 329 2.097791 GCGCCCGTCCATTTTTACAATA 59.902 45.455 0.00 0.00 0.00 1.90
329 330 1.135228 GCGCCCGTCCATTTTTACAAT 60.135 47.619 0.00 0.00 0.00 2.71
330 331 0.241481 GCGCCCGTCCATTTTTACAA 59.759 50.000 0.00 0.00 0.00 2.41
331 332 1.877367 GCGCCCGTCCATTTTTACA 59.123 52.632 0.00 0.00 0.00 2.41
332 333 1.226184 CGCGCCCGTCCATTTTTAC 60.226 57.895 0.00 0.00 0.00 2.01
333 334 2.400158 CCGCGCCCGTCCATTTTTA 61.400 57.895 0.00 0.00 0.00 1.52
334 335 3.743636 CCGCGCCCGTCCATTTTT 61.744 61.111 0.00 0.00 0.00 1.94
351 352 4.719616 GTCGAAGGCGCACGTTGC 62.720 66.667 10.83 0.90 40.69 4.17
360 361 0.389948 ACAACTGGATCGTCGAAGGC 60.390 55.000 0.00 0.00 0.00 4.35
361 362 1.726791 CAACAACTGGATCGTCGAAGG 59.273 52.381 0.00 0.00 0.00 3.46
362 363 2.672714 TCAACAACTGGATCGTCGAAG 58.327 47.619 0.00 0.00 0.00 3.79
363 364 2.804697 TCAACAACTGGATCGTCGAA 57.195 45.000 0.00 0.00 0.00 3.71
364 365 4.421058 CTTATCAACAACTGGATCGTCGA 58.579 43.478 0.00 0.00 0.00 4.20
365 366 3.551890 CCTTATCAACAACTGGATCGTCG 59.448 47.826 0.00 0.00 0.00 5.12
366 367 4.330074 CACCTTATCAACAACTGGATCGTC 59.670 45.833 0.00 0.00 0.00 4.20
367 368 4.253685 CACCTTATCAACAACTGGATCGT 58.746 43.478 0.00 0.00 0.00 3.73
368 369 4.253685 ACACCTTATCAACAACTGGATCG 58.746 43.478 0.00 0.00 0.00 3.69
369 370 5.940470 AGAACACCTTATCAACAACTGGATC 59.060 40.000 0.00 0.00 0.00 3.36
370 371 5.880901 AGAACACCTTATCAACAACTGGAT 58.119 37.500 0.00 0.00 0.00 3.41
371 372 5.304686 AGAACACCTTATCAACAACTGGA 57.695 39.130 0.00 0.00 0.00 3.86
372 373 4.455877 GGAGAACACCTTATCAACAACTGG 59.544 45.833 0.00 0.00 0.00 4.00
373 374 5.063204 TGGAGAACACCTTATCAACAACTG 58.937 41.667 0.00 0.00 0.00 3.16
374 375 5.304686 TGGAGAACACCTTATCAACAACT 57.695 39.130 0.00 0.00 0.00 3.16
375 376 5.531287 ACTTGGAGAACACCTTATCAACAAC 59.469 40.000 0.00 0.00 0.00 3.32
379 380 4.039973 ACGACTTGGAGAACACCTTATCAA 59.960 41.667 0.00 0.00 0.00 2.57
383 384 2.030540 CGACGACTTGGAGAACACCTTA 60.031 50.000 0.00 0.00 0.00 2.69
384 385 1.269621 CGACGACTTGGAGAACACCTT 60.270 52.381 0.00 0.00 0.00 3.50
394 395 0.032952 TGTCCCTTTCGACGACTTGG 59.967 55.000 0.00 0.00 35.40 3.61
399 400 2.288395 GGTAACTTGTCCCTTTCGACGA 60.288 50.000 0.00 0.00 35.40 4.20
418 419 9.693739 TTTTATATGTGGACAAATACATGAGGT 57.306 29.630 0.00 0.00 37.98 3.85
475 479 3.793797 ATATCGACACGAACACATGGA 57.206 42.857 0.00 0.00 39.99 3.41
486 490 9.486857 GCCTAAAACTTAAAGAAATATCGACAC 57.513 33.333 0.00 0.00 0.00 3.67
487 491 9.221933 TGCCTAAAACTTAAAGAAATATCGACA 57.778 29.630 0.00 0.00 0.00 4.35
560 564 3.762674 CCTTTTCGACCTAGGCTCC 57.237 57.895 9.30 0.00 0.00 4.70
572 576 2.742774 ACTGCACGAAAATGCCTTTTC 58.257 42.857 14.99 14.99 45.50 2.29
589 594 3.215568 TGTGGGCGGTGCAAACTG 61.216 61.111 0.00 0.00 0.00 3.16
591 596 2.362329 ATTGTGTGGGCGGTGCAAAC 62.362 55.000 0.00 0.00 0.00 2.93
651 666 1.735920 CTCAGTCCTCACACTGCGC 60.736 63.158 0.00 0.00 43.18 6.09
652 667 1.080230 CCTCAGTCCTCACACTGCG 60.080 63.158 0.00 0.00 43.18 5.18
653 668 0.246086 CTCCTCAGTCCTCACACTGC 59.754 60.000 0.00 0.00 43.18 4.40
654 669 1.271934 CACTCCTCAGTCCTCACACTG 59.728 57.143 0.00 0.00 44.61 3.66
655 670 1.626686 CACTCCTCAGTCCTCACACT 58.373 55.000 0.00 0.00 0.00 3.55
656 671 0.605589 CCACTCCTCAGTCCTCACAC 59.394 60.000 0.00 0.00 0.00 3.82
657 672 0.188587 ACCACTCCTCAGTCCTCACA 59.811 55.000 0.00 0.00 0.00 3.58
658 673 0.892063 GACCACTCCTCAGTCCTCAC 59.108 60.000 0.00 0.00 0.00 3.51
659 674 0.780637 AGACCACTCCTCAGTCCTCA 59.219 55.000 0.00 0.00 0.00 3.86
660 675 1.005450 AGAGACCACTCCTCAGTCCTC 59.995 57.143 0.00 0.00 43.53 3.71
661 676 1.005450 GAGAGACCACTCCTCAGTCCT 59.995 57.143 0.00 0.00 43.53 3.85
662 677 1.470051 GAGAGACCACTCCTCAGTCC 58.530 60.000 0.00 0.00 43.53 3.85
726 741 3.772932 CATTGGATTCGGTGGTTGATTG 58.227 45.455 0.00 0.00 0.00 2.67
954 986 2.628106 CTCGAATCAATGCGCCCG 59.372 61.111 4.18 0.00 0.00 6.13
1065 1563 0.105194 TGTCAAGGAGGAGGTGGTCA 60.105 55.000 0.00 0.00 0.00 4.02
1080 1578 2.755876 AGGCGCTCGAGGATGTCA 60.756 61.111 15.58 0.00 0.00 3.58
1272 1770 4.803426 CTCTCGCACACGCCCTCC 62.803 72.222 0.00 0.00 39.84 4.30
1316 1814 1.477295 GAGGGGAAGACGTGTAGAAGG 59.523 57.143 0.00 0.00 0.00 3.46
1343 1841 2.177594 GATGAGGCGGCCTATGGAGG 62.178 65.000 23.92 0.00 46.93 4.30
1390 1888 4.807304 GGATATGCAAAACTCAAGGCATTG 59.193 41.667 4.34 4.34 43.97 2.82
1395 1893 2.358898 CGGGGATATGCAAAACTCAAGG 59.641 50.000 0.00 0.00 0.00 3.61
1425 1923 3.645660 TTGATGCCCAGCGGGTCA 61.646 61.111 13.97 1.94 46.51 4.02
1439 1937 2.041485 TCCTGCCCAATCTCAATGTTGA 59.959 45.455 0.00 0.00 35.57 3.18
1440 1938 2.426024 CTCCTGCCCAATCTCAATGTTG 59.574 50.000 0.00 0.00 0.00 3.33
1441 1939 2.042162 ACTCCTGCCCAATCTCAATGTT 59.958 45.455 0.00 0.00 0.00 2.71
1442 1940 1.637553 ACTCCTGCCCAATCTCAATGT 59.362 47.619 0.00 0.00 0.00 2.71
1446 1944 1.361204 TGAACTCCTGCCCAATCTCA 58.639 50.000 0.00 0.00 0.00 3.27
1500 1998 0.300789 GCATAAGCGTCGTAAGCCAC 59.699 55.000 0.00 0.00 34.64 5.01
1517 2015 4.035558 GTCCAAAAGCATGATATTCGAGCA 59.964 41.667 0.00 0.00 0.00 4.26
1532 2030 3.753272 AGTGATGTCGGAATGTCCAAAAG 59.247 43.478 0.00 0.00 35.91 2.27
1545 2043 3.119291 GCTAATGAGGTCAGTGATGTCG 58.881 50.000 0.00 0.00 0.00 4.35
1547 2045 3.517100 AGTGCTAATGAGGTCAGTGATGT 59.483 43.478 0.00 0.00 0.00 3.06
1675 2390 1.299089 GTGTGCACAAAAGGCCGAC 60.299 57.895 23.59 1.26 0.00 4.79
1973 2701 4.617959 TGAAACTGGTAGAGAAGAACACG 58.382 43.478 0.00 0.00 0.00 4.49
2103 2835 1.405256 CCAGCTCAGATCACACTCACC 60.405 57.143 0.00 0.00 0.00 4.02
2345 3111 2.599973 CTGCAAAATTACAATGCGGCTC 59.400 45.455 0.00 0.00 42.91 4.70
2463 3354 1.317613 CTCGATGCAGAGGCTAGACT 58.682 55.000 0.00 0.00 41.91 3.24
2464 3355 1.028905 ACTCGATGCAGAGGCTAGAC 58.971 55.000 7.77 0.00 42.31 2.59
2465 3356 1.028130 CACTCGATGCAGAGGCTAGA 58.972 55.000 7.77 0.00 42.31 2.43
2601 3520 9.722184 TTCAAGGAATTTGCATGAATTAAATCA 57.278 25.926 4.72 0.00 36.70 2.57
2650 3577 4.466370 CCTCCGTCCCATAATATAAGAGCA 59.534 45.833 0.00 0.00 0.00 4.26
2651 3578 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
2660 3587 3.339713 AATACTCCCTCCGTCCCATAA 57.660 47.619 0.00 0.00 0.00 1.90
2661 3588 3.339713 AAATACTCCCTCCGTCCCATA 57.660 47.619 0.00 0.00 0.00 2.74
2662 3589 2.191981 AAATACTCCCTCCGTCCCAT 57.808 50.000 0.00 0.00 0.00 4.00
2663 3590 2.852714 TAAATACTCCCTCCGTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
2664 3591 4.701651 AATTAAATACTCCCTCCGTCCC 57.298 45.455 0.00 0.00 0.00 4.46
2665 3592 6.165700 TGTAATTAAATACTCCCTCCGTCC 57.834 41.667 2.52 0.00 0.00 4.79
2666 3593 8.557029 CAATTGTAATTAAATACTCCCTCCGTC 58.443 37.037 0.00 0.00 0.00 4.79
2667 3594 8.050930 ACAATTGTAATTAAATACTCCCTCCGT 58.949 33.333 9.97 0.00 0.00 4.69
2668 3595 8.446599 ACAATTGTAATTAAATACTCCCTCCG 57.553 34.615 9.97 0.00 0.00 4.63
2823 3756 0.754217 CCTTGGATGGCTCCCACATG 60.754 60.000 0.00 0.00 41.29 3.21
2824 3757 0.920763 TCCTTGGATGGCTCCCACAT 60.921 55.000 0.00 0.00 41.29 3.21
2983 3916 2.476051 GTTGTCGGCATCGCAGTG 59.524 61.111 0.00 0.00 36.13 3.66
3163 4109 6.505044 AATTAGAATTACAACCGACCCAAC 57.495 37.500 0.00 0.00 0.00 3.77
3164 4110 6.128227 CGAAATTAGAATTACAACCGACCCAA 60.128 38.462 0.00 0.00 0.00 4.12
3189 4143 9.668497 AAAGTATTCTCAGGTTACCAATAACTC 57.332 33.333 3.51 0.00 40.59 3.01
3236 4190 6.828785 CAGGCTACCAATAACCAGAAATTAGT 59.171 38.462 0.00 0.00 0.00 2.24
3423 4387 4.607293 ACTTCAGTCTGATGCTTGTGTA 57.393 40.909 14.12 0.00 0.00 2.90
3424 4388 3.482156 ACTTCAGTCTGATGCTTGTGT 57.518 42.857 14.12 0.00 0.00 3.72
3624 4920 6.646267 TGGTAGACCAGGTAACAAATATGAC 58.354 40.000 0.00 0.00 42.01 3.06
3725 5021 8.747538 ATGTTACCTTTGAACACTTTCTAAGT 57.252 30.769 7.48 0.00 40.78 2.24
3728 5024 7.776030 TGGAATGTTACCTTTGAACACTTTCTA 59.224 33.333 0.00 0.00 39.51 2.10
3747 5043 5.337491 GGGTGCTGAAATATTTGTGGAATGT 60.337 40.000 5.17 0.00 0.00 2.71
3757 5053 3.016736 CAACTCCGGGTGCTGAAATATT 58.983 45.455 0.00 0.00 0.00 1.28
3784 5080 5.632347 GGATACAACATAATAACGGAGGTCG 59.368 44.000 0.00 0.00 45.88 4.79
3842 5207 4.964897 TGTTGATGTAGGATCAGATGAGGT 59.035 41.667 0.00 0.00 0.00 3.85
3944 5326 7.071071 TGGAAAATGGAAGAAGATTGAAACCTT 59.929 33.333 0.00 0.00 0.00 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.