Multiple sequence alignment - TraesCS2B01G596800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G596800 chr2B 100.000 3795 0 0 1 3795 780018150 780014356 0.000000e+00 7009.0
1 TraesCS2B01G596800 chr2B 100.000 2438 0 0 4096 6533 780014055 780011618 0.000000e+00 4503.0
2 TraesCS2B01G596800 chr2B 87.854 247 18 1 4189 4423 36443844 36444090 4.990000e-71 279.0
3 TraesCS2B01G596800 chr2B 70.481 874 188 58 5492 6328 712637916 712637076 3.200000e-23 121.0
4 TraesCS2B01G596800 chr2B 80.420 143 28 0 2192 2334 606613516 606613658 6.930000e-20 110.0
5 TraesCS2B01G596800 chr2B 78.659 164 26 9 6170 6328 693306748 693306907 4.170000e-17 100.0
6 TraesCS2B01G596800 chr2B 81.538 65 11 1 5409 5473 732864054 732863991 1.200000e-02 52.8
7 TraesCS2B01G596800 chr2D 92.738 2947 130 31 26 2895 651073160 651070221 0.000000e+00 4180.0
8 TraesCS2B01G596800 chr2D 94.525 2137 89 12 4420 6533 651068999 651066868 0.000000e+00 3273.0
9 TraesCS2B01G596800 chr2D 88.487 912 89 9 2890 3794 651070021 651069119 0.000000e+00 1088.0
10 TraesCS2B01G596800 chr2D 87.778 270 14 5 4171 4423 145926492 145926225 1.380000e-76 298.0
11 TraesCS2B01G596800 chr2D 79.720 143 29 0 2192 2334 514946923 514947065 3.220000e-18 104.0
12 TraesCS2B01G596800 chr2D 77.966 118 24 2 2214 2330 548632169 548632285 9.090000e-09 73.1
13 TraesCS2B01G596800 chr2D 76.154 130 29 2 2209 2337 548447554 548447682 4.230000e-07 67.6
14 TraesCS2B01G596800 chr2A 91.336 2747 143 32 26 2684 776599048 776601787 0.000000e+00 3666.0
15 TraesCS2B01G596800 chr2A 96.856 986 30 1 4420 5404 776602986 776603971 0.000000e+00 1648.0
16 TraesCS2B01G596800 chr2A 93.676 1091 46 6 2714 3794 776601788 776602865 0.000000e+00 1611.0
17 TraesCS2B01G596800 chr2A 90.024 822 77 5 5482 6300 776604007 776604826 0.000000e+00 1059.0
18 TraesCS2B01G596800 chr2A 86.538 208 16 1 4227 4422 744194475 744194682 1.100000e-52 219.0
19 TraesCS2B01G596800 chr2A 86.058 208 16 2 4227 4422 350462902 350463108 1.850000e-50 211.0
20 TraesCS2B01G596800 chr2A 81.119 143 27 0 2192 2334 658907476 658907618 1.490000e-21 115.0
21 TraesCS2B01G596800 chr2A 94.595 74 4 0 4098 4171 776602915 776602988 1.490000e-21 115.0
22 TraesCS2B01G596800 chr2A 77.236 123 26 2 2209 2330 691530578 691530699 3.270000e-08 71.3
23 TraesCS2B01G596800 chr2A 96.970 33 1 0 2214 2246 759149645 759149677 1.000000e-03 56.5
24 TraesCS2B01G596800 chr4B 83.297 922 118 18 5491 6383 3910877 3909963 0.000000e+00 817.0
25 TraesCS2B01G596800 chr4B 79.310 638 128 4 4651 5286 576166920 576167555 1.670000e-120 444.0
26 TraesCS2B01G596800 chr3A 82.974 928 122 16 5485 6383 742042474 742043394 0.000000e+00 806.0
27 TraesCS2B01G596800 chr3A 75.145 865 160 40 5550 6378 476659946 476660791 8.060000e-94 355.0
28 TraesCS2B01G596800 chr3A 89.313 262 15 4 4172 4420 392314138 392313877 3.800000e-82 316.0
29 TraesCS2B01G596800 chr3A 73.196 291 66 8 1302 1587 16009458 16009741 1.940000e-15 95.3
30 TraesCS2B01G596800 chr3A 77.305 141 32 0 2192 2332 17332557 17332697 4.200000e-12 84.2
31 TraesCS2B01G596800 chr3A 78.333 120 26 0 2213 2332 16233504 16233385 1.950000e-10 78.7
32 TraesCS2B01G596800 chr3A 95.238 42 1 1 5407 5448 439737031 439736991 1.520000e-06 65.8
33 TraesCS2B01G596800 chr3B 86.460 709 87 9 5512 6215 79271973 79271269 0.000000e+00 769.0
34 TraesCS2B01G596800 chr3B 86.400 250 22 1 4189 4426 584359989 584359740 5.020000e-66 263.0
35 TraesCS2B01G596800 chr3B 73.498 283 62 9 1303 1580 13246271 13246545 1.940000e-15 95.3
36 TraesCS2B01G596800 chr3B 93.220 59 3 1 4371 4428 735258487 735258545 1.170000e-12 86.1
37 TraesCS2B01G596800 chr3B 100.000 29 0 0 5407 5435 411290093 411290121 3.000000e-03 54.7
38 TraesCS2B01G596800 chr3D 85.992 721 81 13 5556 6258 49774798 49774080 0.000000e+00 754.0
39 TraesCS2B01G596800 chr3D 89.313 262 15 2 4172 4420 301656002 301655741 3.800000e-82 316.0
40 TraesCS2B01G596800 chr3D 88.846 260 16 4 4171 4417 303901213 303901472 2.290000e-79 307.0
41 TraesCS2B01G596800 chr3D 86.441 177 24 0 2851 3027 401305330 401305506 1.860000e-45 195.0
42 TraesCS2B01G596800 chr3D 80.269 223 37 7 2799 3017 552239470 552239251 1.890000e-35 161.0
43 TraesCS2B01G596800 chr3D 73.358 274 59 10 1320 1587 5409970 5409705 9.020000e-14 89.8
44 TraesCS2B01G596800 chr3D 77.305 141 32 0 2192 2332 5329761 5329901 4.200000e-12 84.2
45 TraesCS2B01G596800 chr3D 100.000 28 0 0 5408 5435 516849313 516849286 1.200000e-02 52.8
46 TraesCS2B01G596800 chr5B 83.899 795 114 13 5491 6278 619037 619824 0.000000e+00 747.0
47 TraesCS2B01G596800 chr5B 74.242 858 162 42 5550 6369 646659004 646659840 8.230000e-79 305.0
48 TraesCS2B01G596800 chr5B 84.360 211 33 0 2820 3030 673684552 673684762 2.390000e-49 207.0
49 TraesCS2B01G596800 chr5B 82.710 214 36 1 2820 3033 293458437 293458225 8.650000e-44 189.0
50 TraesCS2B01G596800 chr1B 82.653 882 108 20 5491 6347 675463772 675464633 0.000000e+00 739.0
51 TraesCS2B01G596800 chr1B 100.000 29 0 0 5409 5437 616600502 616600530 3.000000e-03 54.7
52 TraesCS2B01G596800 chr5D 85.865 665 84 8 5509 6168 396813364 396812705 0.000000e+00 699.0
53 TraesCS2B01G596800 chr5D 83.938 193 28 2 2838 3028 118043000 118042809 1.450000e-41 182.0
54 TraesCS2B01G596800 chr4A 78.756 579 119 4 4651 5227 7441747 7441171 1.030000e-102 385.0
55 TraesCS2B01G596800 chr4A 97.297 37 1 0 5407 5443 62224155 62224191 5.470000e-06 63.9
56 TraesCS2B01G596800 chr4A 97.143 35 1 0 5404 5438 596135557 596135523 7.070000e-05 60.2
57 TraesCS2B01G596800 chr7D 89.850 266 15 1 4169 4422 611484781 611485046 1.360000e-86 331.0
58 TraesCS2B01G596800 chr7D 87.008 254 20 8 4189 4429 34314867 34314614 2.320000e-69 274.0
59 TraesCS2B01G596800 chr7D 85.019 267 24 6 4177 4427 92567675 92567941 2.340000e-64 257.0
60 TraesCS2B01G596800 chr7D 85.492 193 25 2 2849 3039 135255194 135255385 1.440000e-46 198.0
61 TraesCS2B01G596800 chr7D 80.851 141 16 10 6198 6333 592898168 592898302 4.170000e-17 100.0
62 TraesCS2B01G596800 chr7D 100.000 30 0 0 5406 5435 506678169 506678140 1.000000e-03 56.5
63 TraesCS2B01G596800 chr1D 89.313 262 15 2 4172 4420 39348618 39348357 3.800000e-82 316.0
64 TraesCS2B01G596800 chr1D 89.313 262 15 2 4172 4420 338270852 338271113 3.800000e-82 316.0
65 TraesCS2B01G596800 chr1D 83.886 211 34 0 2820 3030 12174670 12174460 1.110000e-47 202.0
66 TraesCS2B01G596800 chr1D 88.182 110 13 0 2921 3030 6346261 6346370 1.480000e-26 132.0
67 TraesCS2B01G596800 chr6D 88.550 262 17 2 4172 4420 418386849 418387110 8.230000e-79 305.0
68 TraesCS2B01G596800 chr6D 80.591 237 39 6 2819 3054 95285619 95285849 6.730000e-40 176.0
69 TraesCS2B01G596800 chr4D 87.594 266 21 1 4171 4424 104582662 104582927 1.380000e-76 298.0
70 TraesCS2B01G596800 chr4D 76.016 246 39 9 1318 1553 460955896 460956131 6.930000e-20 110.0
71 TraesCS2B01G596800 chr4D 96.875 32 1 0 5406 5437 466328828 466328859 3.000000e-03 54.7
72 TraesCS2B01G596800 chr6A 84.387 269 26 5 4189 4441 111114991 111115259 3.910000e-62 250.0
73 TraesCS2B01G596800 chr6A 86.893 206 26 1 2826 3030 601961147 601961352 5.100000e-56 230.0
74 TraesCS2B01G596800 chr6A 82.883 111 7 1 4326 4424 605263554 605263664 9.020000e-14 89.8
75 TraesCS2B01G596800 chr7B 72.421 921 199 44 5491 6378 593560498 593559600 6.540000e-60 243.0
76 TraesCS2B01G596800 chr7A 85.492 193 25 2 2849 3039 134457121 134457312 1.440000e-46 198.0
77 TraesCS2B01G596800 chr1A 83.732 209 34 0 2820 3028 14115839 14115631 1.440000e-46 198.0
78 TraesCS2B01G596800 chr1A 84.821 112 13 4 2826 2935 448987455 448987564 6.930000e-20 110.0
79 TraesCS2B01G596800 chr1A 90.000 80 7 1 2951 3030 579820588 579820666 1.160000e-17 102.0
80 TraesCS2B01G596800 chr1A 100.000 31 0 0 5407 5437 540283931 540283961 2.540000e-04 58.4
81 TraesCS2B01G596800 chr5A 83.010 206 28 5 2826 3026 512209980 512210183 5.200000e-41 180.0
82 TraesCS2B01G596800 chr5A 79.882 169 25 9 6170 6333 8503722 8503886 1.490000e-21 115.0
83 TraesCS2B01G596800 chrUn 70.785 777 176 45 5576 6328 347314689 347313940 5.320000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G596800 chr2B 780011618 780018150 6532 True 5756.0 7009 100.000000 1 6533 2 chr2B.!!$R3 6532
1 TraesCS2B01G596800 chr2D 651066868 651073160 6292 True 2847.0 4180 91.916667 26 6533 3 chr2D.!!$R2 6507
2 TraesCS2B01G596800 chr2A 776599048 776604826 5778 False 1619.8 3666 93.297400 26 6300 5 chr2A.!!$F6 6274
3 TraesCS2B01G596800 chr4B 3909963 3910877 914 True 817.0 817 83.297000 5491 6383 1 chr4B.!!$R1 892
4 TraesCS2B01G596800 chr4B 576166920 576167555 635 False 444.0 444 79.310000 4651 5286 1 chr4B.!!$F1 635
5 TraesCS2B01G596800 chr3A 742042474 742043394 920 False 806.0 806 82.974000 5485 6383 1 chr3A.!!$F4 898
6 TraesCS2B01G596800 chr3A 476659946 476660791 845 False 355.0 355 75.145000 5550 6378 1 chr3A.!!$F3 828
7 TraesCS2B01G596800 chr3B 79271269 79271973 704 True 769.0 769 86.460000 5512 6215 1 chr3B.!!$R1 703
8 TraesCS2B01G596800 chr3D 49774080 49774798 718 True 754.0 754 85.992000 5556 6258 1 chr3D.!!$R2 702
9 TraesCS2B01G596800 chr5B 619037 619824 787 False 747.0 747 83.899000 5491 6278 1 chr5B.!!$F1 787
10 TraesCS2B01G596800 chr5B 646659004 646659840 836 False 305.0 305 74.242000 5550 6369 1 chr5B.!!$F2 819
11 TraesCS2B01G596800 chr1B 675463772 675464633 861 False 739.0 739 82.653000 5491 6347 1 chr1B.!!$F2 856
12 TraesCS2B01G596800 chr5D 396812705 396813364 659 True 699.0 699 85.865000 5509 6168 1 chr5D.!!$R2 659
13 TraesCS2B01G596800 chr4A 7441171 7441747 576 True 385.0 385 78.756000 4651 5227 1 chr4A.!!$R1 576
14 TraesCS2B01G596800 chr7B 593559600 593560498 898 True 243.0 243 72.421000 5491 6378 1 chr7B.!!$R1 887

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
34 35 1.217882 GCGAGGGATTTACATGTCGG 58.782 55.0 0.00 0.00 0.00 4.79 F
1001 1068 0.909623 CTCGAACACCCCCACCTATT 59.090 55.0 0.00 0.00 0.00 1.73 F
1655 1753 0.455633 CGAACGTCACCTTCTACCCG 60.456 60.0 0.00 0.00 0.00 5.28 F
2658 2777 0.251297 CATCCAAGTCAAGTGGGGCA 60.251 55.0 0.00 0.00 36.73 5.36 F
3627 3968 0.104777 AGATCCTAGCATGGAGGGCA 60.105 55.0 0.00 0.00 39.78 5.36 F
5438 5802 0.878086 AACGCCAACCCGCAAATTTG 60.878 50.0 14.03 14.03 0.00 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1604 1702 0.036858 GAAGACCAGGTGTGCTCTCC 60.037 60.0 0.00 0.00 0.00 3.71 R
2636 2755 0.883833 CCCACTTGACTTGGATGTGC 59.116 55.0 0.00 0.00 36.02 4.57 R
3354 3692 0.733150 GCGCCTTGGATGTTCCTAAC 59.267 55.0 0.00 0.00 37.46 2.34 R
4400 4741 0.115349 AGACTAGCCACAGTGGGAGT 59.885 55.0 21.77 2.87 38.19 3.85 R
5452 5816 0.252330 TCCCCCACTCATGTCCGTTA 60.252 55.0 0.00 0.00 0.00 3.18 R
6492 6905 0.814010 CCCGATGCTTTTACCCTCCG 60.814 60.0 0.00 0.00 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.703897 CATAGGATTAACTTTGCGAGGGA 58.296 43.478 0.00 0.00 0.00 4.20
23 24 3.933861 AGGATTAACTTTGCGAGGGAT 57.066 42.857 0.00 0.00 0.00 3.85
24 25 4.236527 AGGATTAACTTTGCGAGGGATT 57.763 40.909 0.00 0.00 0.00 3.01
34 35 1.217882 GCGAGGGATTTACATGTCGG 58.782 55.000 0.00 0.00 0.00 4.79
453 463 3.171388 ATGAGGCCCCGGATGGTC 61.171 66.667 0.73 0.00 0.00 4.02
796 811 2.729778 CGATCGACATGTGAACGTACCA 60.730 50.000 10.26 0.00 0.00 3.25
799 814 2.128821 CGACATGTGAACGTACCAACA 58.871 47.619 1.15 0.00 0.00 3.33
838 853 2.163412 GGATCTCTTCCATCTCGATCGG 59.837 54.545 16.41 6.26 44.74 4.18
863 878 2.218239 GCGACAAAACAAACGCGCA 61.218 52.632 5.73 0.00 43.45 6.09
958 1008 3.010250 GGTTAATGACTCCCCAAACTCCT 59.990 47.826 0.00 0.00 0.00 3.69
959 1009 4.226620 GGTTAATGACTCCCCAAACTCCTA 59.773 45.833 0.00 0.00 0.00 2.94
960 1010 5.183969 GTTAATGACTCCCCAAACTCCTAC 58.816 45.833 0.00 0.00 0.00 3.18
961 1011 2.409064 TGACTCCCCAAACTCCTACA 57.591 50.000 0.00 0.00 0.00 2.74
974 1041 7.256225 CCCAAACTCCTACAGTATATTCCTACC 60.256 44.444 0.00 0.00 32.30 3.18
975 1042 7.509659 CCAAACTCCTACAGTATATTCCTACCT 59.490 40.741 0.00 0.00 32.30 3.08
976 1043 8.361139 CAAACTCCTACAGTATATTCCTACCTG 58.639 40.741 0.00 0.00 32.30 4.00
998 1065 2.122547 ACTCGAACACCCCCACCT 60.123 61.111 0.00 0.00 0.00 4.00
1001 1068 0.909623 CTCGAACACCCCCACCTATT 59.090 55.000 0.00 0.00 0.00 1.73
1008 1075 2.510906 CCCCACCTATTCTGGCCG 59.489 66.667 0.00 0.00 0.00 6.13
1029 1107 9.004717 TGGCCGATAAATAAATTTAATCGATCA 57.995 29.630 23.08 18.40 36.51 2.92
1040 1118 1.418334 AATCGATCAGCCACCTAGCT 58.582 50.000 0.00 0.00 46.45 3.32
1053 1131 2.752640 TAGCTAGCGACGGTGCCA 60.753 61.111 10.33 0.00 34.65 4.92
1060 1138 2.080286 AGCGACGGTGCCAATATATC 57.920 50.000 0.00 0.00 34.65 1.63
1074 1166 2.119801 TATATCTACTCCGGCGACCC 57.880 55.000 9.30 0.00 0.00 4.46
1154 1252 1.149148 GGCAAGACCTCGTGAGTTTC 58.851 55.000 0.00 0.00 34.51 2.78
1289 1387 3.210528 GCCCTCGTCGATCGGAGT 61.211 66.667 16.41 0.00 40.32 3.85
1655 1753 0.455633 CGAACGTCACCTTCTACCCG 60.456 60.000 0.00 0.00 0.00 5.28
1660 1758 3.006728 CACCTTCTACCCGGGGCA 61.007 66.667 27.92 11.59 0.00 5.36
1662 1760 4.176752 CCTTCTACCCGGGGCAGC 62.177 72.222 27.92 0.00 0.00 5.25
1726 1824 4.625800 GCTAAGTGGCCACTGGAG 57.374 61.111 38.35 33.89 41.58 3.86
1795 1893 1.354337 CTTGTCCACTGGATCGCGTG 61.354 60.000 5.77 6.14 32.73 5.34
1868 1966 2.364972 ACCAAAACCCTGAGAACCTG 57.635 50.000 0.00 0.00 0.00 4.00
1886 1984 0.740868 TGATGTACTTCTGCTGCGCC 60.741 55.000 4.18 0.00 0.00 6.53
1969 2067 5.372373 CCCCAGTTCAGAAATAGATTCTCC 58.628 45.833 0.00 0.00 45.42 3.71
2024 2137 3.763360 CTGATGATAGCTCCTCTTCCGAT 59.237 47.826 0.00 0.00 0.00 4.18
2090 2203 0.692476 TAGCAACAGCACCAGTGGAT 59.308 50.000 18.40 0.00 0.00 3.41
2127 2240 2.396955 CGCAAGCAGCTGAGGAAGG 61.397 63.158 20.43 0.71 42.61 3.46
2145 2258 1.351707 GCCATGTTCGTACGGCATG 59.648 57.895 29.48 29.48 44.25 4.06
2288 2404 1.597461 GTCCCTCAACCCCTTCGAG 59.403 63.158 0.00 0.00 0.00 4.04
2303 2419 3.379240 CTTCGAGATGATGAACGAGCAT 58.621 45.455 0.00 0.00 36.22 3.79
2328 2444 2.644555 CTTCCCCGGGCAGTATGTCG 62.645 65.000 17.73 0.00 45.85 4.35
2359 2478 1.885163 GATGACGACTTCACGGGGGT 61.885 60.000 0.00 0.00 36.92 4.95
2388 2507 3.698463 GGCGTGTCGGTGTCGTTG 61.698 66.667 0.00 0.00 37.69 4.10
2537 2656 2.691927 GTTTTCTATGGGGACGTCGTT 58.308 47.619 9.92 0.00 0.00 3.85
2563 2682 5.090757 TCGTACACTATCATCAAACGTGAC 58.909 41.667 0.00 0.00 36.31 3.67
2636 2755 1.597663 GTTGTTGACTTGAGTGACGGG 59.402 52.381 0.00 0.00 0.00 5.28
2651 2770 0.606401 ACGGGCACATCCAAGTCAAG 60.606 55.000 0.00 0.00 36.21 3.02
2658 2777 0.251297 CATCCAAGTCAAGTGGGGCA 60.251 55.000 0.00 0.00 36.73 5.36
2687 2806 3.431626 CCACGTCAATGGTAAGGCATCTA 60.432 47.826 0.00 0.00 34.77 1.98
3030 3363 9.414295 CATAAAAATATGATGTGGCCTTGTATG 57.586 33.333 3.32 0.00 0.00 2.39
3251 3584 8.851145 TGATGTGGTATCTATCTAGAAACACTC 58.149 37.037 10.17 6.59 36.31 3.51
3354 3692 6.293698 TCATAGGACAATGATCCAACAGATG 58.706 40.000 5.04 0.00 41.73 2.90
3355 3693 4.581309 AGGACAATGATCCAACAGATGT 57.419 40.909 5.04 0.00 41.73 3.06
3362 3700 6.375455 ACAATGATCCAACAGATGTTAGGAAC 59.625 38.462 15.83 14.29 38.09 3.62
3374 3712 0.742990 TTAGGAACATCCAAGGCGCG 60.743 55.000 0.00 0.00 39.61 6.86
3470 3808 1.051008 TCATCCAGTCCATGATCCGG 58.949 55.000 0.00 0.00 0.00 5.14
3475 3813 2.280186 GTCCATGATCCGGTCGGC 60.280 66.667 0.00 0.00 34.68 5.54
3476 3814 2.762043 TCCATGATCCGGTCGGCA 60.762 61.111 0.00 0.00 34.68 5.69
3477 3815 2.189257 CCATGATCCGGTCGGCAA 59.811 61.111 0.00 0.00 34.68 4.52
3515 3856 4.393062 CGAGCCAAGTTGTATCTTGTCAAT 59.607 41.667 1.45 0.00 42.01 2.57
3517 3858 5.316167 AGCCAAGTTGTATCTTGTCAATCA 58.684 37.500 1.45 0.00 42.01 2.57
3525 3866 5.719173 TGTATCTTGTCAATCACACATCGA 58.281 37.500 0.00 0.00 33.41 3.59
3532 3873 3.367932 GTCAATCACACATCGACGTCAAT 59.632 43.478 17.16 0.00 0.00 2.57
3552 3893 3.126879 CGGATTTGCCAGCTGCGA 61.127 61.111 8.66 0.64 45.60 5.10
3576 3917 3.865011 TGCACAATGTTGTTGAAGTGT 57.135 38.095 0.00 0.00 39.91 3.55
3579 3920 3.792956 GCACAATGTTGTTGAAGTGTCTG 59.207 43.478 0.00 0.00 39.91 3.51
3588 3929 1.713597 TGAAGTGTCTGCGCATGTAG 58.286 50.000 12.24 0.00 0.00 2.74
3620 3961 4.083217 GGTAGTCACGTAGATCCTAGCATG 60.083 50.000 0.00 0.00 0.00 4.06
3627 3968 0.104777 AGATCCTAGCATGGAGGGCA 60.105 55.000 0.00 0.00 39.78 5.36
3758 4099 7.269316 ACACGTTAAAATTCCCAAACTTTGAT 58.731 30.769 2.87 0.00 0.00 2.57
3794 4135 1.211949 CCGGACCACCATTACCTTGAT 59.788 52.381 0.00 0.00 35.59 2.57
4171 4512 7.368833 AGGATCGGATAAGATACAAACGTTAG 58.631 38.462 0.00 0.00 33.92 2.34
4172 4513 7.230108 AGGATCGGATAAGATACAAACGTTAGA 59.770 37.037 0.00 0.00 33.92 2.10
4174 4515 7.325660 TCGGATAAGATACAAACGTTAGACT 57.674 36.000 0.00 0.00 0.00 3.24
4175 4516 8.437360 TCGGATAAGATACAAACGTTAGACTA 57.563 34.615 0.00 0.00 0.00 2.59
4176 4517 8.554528 TCGGATAAGATACAAACGTTAGACTAG 58.445 37.037 0.00 0.00 0.00 2.57
4177 4518 7.323177 CGGATAAGATACAAACGTTAGACTAGC 59.677 40.741 0.00 0.00 0.00 3.42
4178 4519 7.594386 GGATAAGATACAAACGTTAGACTAGCC 59.406 40.741 0.00 0.00 0.00 3.93
4179 4520 5.909621 AGATACAAACGTTAGACTAGCCA 57.090 39.130 0.00 0.00 0.00 4.75
4180 4521 5.648572 AGATACAAACGTTAGACTAGCCAC 58.351 41.667 0.00 0.00 0.00 5.01
4181 4522 3.738830 ACAAACGTTAGACTAGCCACA 57.261 42.857 0.00 0.00 0.00 4.17
4182 4523 4.062677 ACAAACGTTAGACTAGCCACAA 57.937 40.909 0.00 0.00 0.00 3.33
4183 4524 4.638304 ACAAACGTTAGACTAGCCACAAT 58.362 39.130 0.00 0.00 0.00 2.71
4184 4525 4.451096 ACAAACGTTAGACTAGCCACAATG 59.549 41.667 0.00 0.00 0.00 2.82
4185 4526 4.530710 AACGTTAGACTAGCCACAATGA 57.469 40.909 0.00 0.00 0.00 2.57
4186 4527 4.530710 ACGTTAGACTAGCCACAATGAA 57.469 40.909 0.00 0.00 0.00 2.57
4187 4528 4.495422 ACGTTAGACTAGCCACAATGAAG 58.505 43.478 0.00 0.00 0.00 3.02
4188 4529 4.219944 ACGTTAGACTAGCCACAATGAAGA 59.780 41.667 0.00 0.00 0.00 2.87
4189 4530 4.800993 CGTTAGACTAGCCACAATGAAGAG 59.199 45.833 0.00 0.00 0.00 2.85
4190 4531 5.622460 CGTTAGACTAGCCACAATGAAGAGT 60.622 44.000 0.00 0.00 0.00 3.24
4191 4532 6.404403 CGTTAGACTAGCCACAATGAAGAGTA 60.404 42.308 0.00 0.00 0.00 2.59
4192 4533 7.321153 GTTAGACTAGCCACAATGAAGAGTAA 58.679 38.462 0.00 0.00 0.00 2.24
4193 4534 5.725362 AGACTAGCCACAATGAAGAGTAAC 58.275 41.667 0.00 0.00 0.00 2.50
4194 4535 5.246203 AGACTAGCCACAATGAAGAGTAACA 59.754 40.000 0.00 0.00 0.00 2.41
4195 4536 6.054860 ACTAGCCACAATGAAGAGTAACAT 57.945 37.500 0.00 0.00 0.00 2.71
4196 4537 7.124298 AGACTAGCCACAATGAAGAGTAACATA 59.876 37.037 0.00 0.00 0.00 2.29
4197 4538 7.796054 ACTAGCCACAATGAAGAGTAACATAT 58.204 34.615 0.00 0.00 0.00 1.78
4198 4539 8.924303 ACTAGCCACAATGAAGAGTAACATATA 58.076 33.333 0.00 0.00 0.00 0.86
4199 4540 9.197694 CTAGCCACAATGAAGAGTAACATATAC 57.802 37.037 0.00 0.00 0.00 1.47
4200 4541 7.564793 AGCCACAATGAAGAGTAACATATACA 58.435 34.615 0.00 0.00 0.00 2.29
4201 4542 8.213679 AGCCACAATGAAGAGTAACATATACAT 58.786 33.333 0.00 0.00 0.00 2.29
4202 4543 9.489084 GCCACAATGAAGAGTAACATATACATA 57.511 33.333 0.00 0.00 0.00 2.29
4235 4576 9.893975 AACTATATTACTACCTTCATAGTGGGT 57.106 33.333 0.00 0.00 36.09 4.51
4268 4609 2.284754 TGGTAACATGCAAAGCCTCA 57.715 45.000 0.00 0.00 46.17 3.86
4269 4610 2.806434 TGGTAACATGCAAAGCCTCAT 58.194 42.857 0.00 0.00 46.17 2.90
4270 4611 3.164268 TGGTAACATGCAAAGCCTCATT 58.836 40.909 0.00 0.00 46.17 2.57
4271 4612 3.577848 TGGTAACATGCAAAGCCTCATTT 59.422 39.130 0.00 0.00 46.17 2.32
4272 4613 4.769488 TGGTAACATGCAAAGCCTCATTTA 59.231 37.500 0.00 0.00 46.17 1.40
4273 4614 5.421693 TGGTAACATGCAAAGCCTCATTTAT 59.578 36.000 0.00 0.00 46.17 1.40
4274 4615 6.070881 TGGTAACATGCAAAGCCTCATTTATT 60.071 34.615 0.00 0.00 46.17 1.40
4275 4616 7.123397 TGGTAACATGCAAAGCCTCATTTATTA 59.877 33.333 0.00 0.00 46.17 0.98
4276 4617 7.649306 GGTAACATGCAAAGCCTCATTTATTAG 59.351 37.037 0.00 0.00 0.00 1.73
4277 4618 7.408756 AACATGCAAAGCCTCATTTATTAGA 57.591 32.000 0.00 0.00 0.00 2.10
4278 4619 7.592885 ACATGCAAAGCCTCATTTATTAGAT 57.407 32.000 0.00 0.00 0.00 1.98
4279 4620 8.015185 ACATGCAAAGCCTCATTTATTAGATT 57.985 30.769 0.00 0.00 0.00 2.40
4280 4621 9.135189 ACATGCAAAGCCTCATTTATTAGATTA 57.865 29.630 0.00 0.00 0.00 1.75
4305 4646 6.862711 AGACTCATATTGCATTGAGACATG 57.137 37.500 21.77 5.67 41.53 3.21
4306 4647 6.354938 AGACTCATATTGCATTGAGACATGT 58.645 36.000 21.77 0.00 41.53 3.21
4307 4648 6.260271 AGACTCATATTGCATTGAGACATGTG 59.740 38.462 21.77 5.93 41.53 3.21
4308 4649 5.298527 ACTCATATTGCATTGAGACATGTGG 59.701 40.000 21.77 3.63 41.53 4.17
4309 4650 5.195185 TCATATTGCATTGAGACATGTGGT 58.805 37.500 1.15 0.00 0.00 4.16
4310 4651 3.861276 ATTGCATTGAGACATGTGGTG 57.139 42.857 1.15 0.00 0.00 4.17
4311 4652 2.275134 TGCATTGAGACATGTGGTGT 57.725 45.000 1.15 0.00 45.83 4.16
4312 4653 2.585330 TGCATTGAGACATGTGGTGTT 58.415 42.857 1.15 0.00 42.36 3.32
4313 4654 3.749226 TGCATTGAGACATGTGGTGTTA 58.251 40.909 1.15 0.00 42.36 2.41
4314 4655 3.501828 TGCATTGAGACATGTGGTGTTAC 59.498 43.478 1.15 0.00 42.36 2.50
4315 4656 3.501828 GCATTGAGACATGTGGTGTTACA 59.498 43.478 1.15 0.00 42.36 2.41
4316 4657 4.378770 GCATTGAGACATGTGGTGTTACAG 60.379 45.833 1.15 0.00 42.36 2.74
4317 4658 4.415881 TTGAGACATGTGGTGTTACAGT 57.584 40.909 1.15 0.00 42.36 3.55
4318 4659 5.538849 TTGAGACATGTGGTGTTACAGTA 57.461 39.130 1.15 0.00 42.36 2.74
4319 4660 5.538849 TGAGACATGTGGTGTTACAGTAA 57.461 39.130 1.15 0.00 42.36 2.24
4320 4661 5.294356 TGAGACATGTGGTGTTACAGTAAC 58.706 41.667 15.58 15.58 42.36 2.50
4321 4662 5.069914 TGAGACATGTGGTGTTACAGTAACT 59.930 40.000 21.56 1.70 42.36 2.24
4322 4663 6.265876 TGAGACATGTGGTGTTACAGTAACTA 59.734 38.462 21.56 7.94 42.36 2.24
4323 4664 7.058023 AGACATGTGGTGTTACAGTAACTAA 57.942 36.000 21.56 7.01 42.36 2.24
4324 4665 6.927381 AGACATGTGGTGTTACAGTAACTAAC 59.073 38.462 21.56 16.66 42.36 2.34
4325 4666 6.823497 ACATGTGGTGTTACAGTAACTAACT 58.177 36.000 21.56 7.17 38.01 2.24
4326 4667 7.954835 ACATGTGGTGTTACAGTAACTAACTA 58.045 34.615 21.56 9.72 38.01 2.24
4327 4668 8.423349 ACATGTGGTGTTACAGTAACTAACTAA 58.577 33.333 21.56 6.44 38.01 2.24
4328 4669 8.706035 CATGTGGTGTTACAGTAACTAACTAAC 58.294 37.037 21.56 14.82 39.38 2.34
4329 4670 8.010733 TGTGGTGTTACAGTAACTAACTAACT 57.989 34.615 21.56 0.00 39.38 2.24
4330 4671 8.477256 TGTGGTGTTACAGTAACTAACTAACTT 58.523 33.333 21.56 0.00 39.38 2.66
4331 4672 9.965824 GTGGTGTTACAGTAACTAACTAACTTA 57.034 33.333 21.56 4.62 39.38 2.24
4332 4673 9.965824 TGGTGTTACAGTAACTAACTAACTTAC 57.034 33.333 21.56 9.13 39.38 2.34
4345 4686 9.585369 ACTAACTAACTTACTCAAACTACCTCT 57.415 33.333 0.00 0.00 0.00 3.69
4347 4688 8.709272 AACTAACTTACTCAAACTACCTCTCT 57.291 34.615 0.00 0.00 0.00 3.10
4348 4689 8.709272 ACTAACTTACTCAAACTACCTCTCTT 57.291 34.615 0.00 0.00 0.00 2.85
4349 4690 8.795513 ACTAACTTACTCAAACTACCTCTCTTC 58.204 37.037 0.00 0.00 0.00 2.87
4350 4691 7.842887 AACTTACTCAAACTACCTCTCTTCT 57.157 36.000 0.00 0.00 0.00 2.85
4351 4692 7.457024 ACTTACTCAAACTACCTCTCTTCTC 57.543 40.000 0.00 0.00 0.00 2.87
4352 4693 7.005296 ACTTACTCAAACTACCTCTCTTCTCA 58.995 38.462 0.00 0.00 0.00 3.27
4353 4694 7.672239 ACTTACTCAAACTACCTCTCTTCTCAT 59.328 37.037 0.00 0.00 0.00 2.90
4354 4695 6.926630 ACTCAAACTACCTCTCTTCTCATT 57.073 37.500 0.00 0.00 0.00 2.57
4355 4696 9.529823 TTACTCAAACTACCTCTCTTCTCATTA 57.470 33.333 0.00 0.00 0.00 1.90
4356 4697 8.423906 ACTCAAACTACCTCTCTTCTCATTAA 57.576 34.615 0.00 0.00 0.00 1.40
4357 4698 8.308207 ACTCAAACTACCTCTCTTCTCATTAAC 58.692 37.037 0.00 0.00 0.00 2.01
4358 4699 8.423906 TCAAACTACCTCTCTTCTCATTAACT 57.576 34.615 0.00 0.00 0.00 2.24
4359 4700 8.524487 TCAAACTACCTCTCTTCTCATTAACTC 58.476 37.037 0.00 0.00 0.00 3.01
4360 4701 8.307483 CAAACTACCTCTCTTCTCATTAACTCA 58.693 37.037 0.00 0.00 0.00 3.41
4361 4702 8.602472 AACTACCTCTCTTCTCATTAACTCAT 57.398 34.615 0.00 0.00 0.00 2.90
4362 4703 8.602472 ACTACCTCTCTTCTCATTAACTCATT 57.398 34.615 0.00 0.00 0.00 2.57
4363 4704 8.474025 ACTACCTCTCTTCTCATTAACTCATTG 58.526 37.037 0.00 0.00 0.00 2.82
4364 4705 6.112058 ACCTCTCTTCTCATTAACTCATTGC 58.888 40.000 0.00 0.00 0.00 3.56
4365 4706 5.526846 CCTCTCTTCTCATTAACTCATTGCC 59.473 44.000 0.00 0.00 0.00 4.52
4366 4707 6.053632 TCTCTTCTCATTAACTCATTGCCA 57.946 37.500 0.00 0.00 0.00 4.92
4367 4708 5.877012 TCTCTTCTCATTAACTCATTGCCAC 59.123 40.000 0.00 0.00 0.00 5.01
4368 4709 5.559770 TCTTCTCATTAACTCATTGCCACA 58.440 37.500 0.00 0.00 0.00 4.17
4369 4710 6.182627 TCTTCTCATTAACTCATTGCCACAT 58.817 36.000 0.00 0.00 0.00 3.21
4370 4711 6.660521 TCTTCTCATTAACTCATTGCCACATT 59.339 34.615 0.00 0.00 0.00 2.71
4371 4712 6.198650 TCTCATTAACTCATTGCCACATTG 57.801 37.500 0.00 0.00 0.00 2.82
4372 4713 5.945191 TCTCATTAACTCATTGCCACATTGA 59.055 36.000 0.00 0.00 0.00 2.57
4373 4714 6.094464 TCTCATTAACTCATTGCCACATTGAG 59.906 38.462 14.66 14.66 43.33 3.02
4376 4717 3.928727 ACTCATTGCCACATTGAGTTG 57.071 42.857 15.68 0.00 46.21 3.16
4377 4718 2.559668 ACTCATTGCCACATTGAGTTGG 59.440 45.455 15.68 0.00 46.21 3.77
4378 4719 2.821378 CTCATTGCCACATTGAGTTGGA 59.179 45.455 10.04 0.00 37.20 3.53
4379 4720 2.557924 TCATTGCCACATTGAGTTGGAC 59.442 45.455 0.00 0.00 0.00 4.02
4380 4721 2.363306 TTGCCACATTGAGTTGGACT 57.637 45.000 0.00 0.00 0.00 3.85
4381 4722 1.896220 TGCCACATTGAGTTGGACTC 58.104 50.000 1.21 1.21 45.26 3.36
4398 4739 4.103365 GACTCGATGTCACTGATGAAGT 57.897 45.455 9.30 0.00 44.73 3.01
4399 4740 4.489810 GACTCGATGTCACTGATGAAGTT 58.510 43.478 9.30 0.00 44.73 2.66
4400 4741 5.641709 GACTCGATGTCACTGATGAAGTTA 58.358 41.667 9.30 0.00 44.73 2.24
4401 4742 5.403246 ACTCGATGTCACTGATGAAGTTAC 58.597 41.667 0.00 0.00 36.83 2.50
4402 4743 5.184096 ACTCGATGTCACTGATGAAGTTACT 59.816 40.000 0.00 0.00 36.83 2.24
4403 4744 5.641709 TCGATGTCACTGATGAAGTTACTC 58.358 41.667 0.00 0.00 36.83 2.59
4404 4745 4.800993 CGATGTCACTGATGAAGTTACTCC 59.199 45.833 0.00 0.00 36.83 3.85
4405 4746 4.537135 TGTCACTGATGAAGTTACTCCC 57.463 45.455 0.00 0.00 36.83 4.30
4406 4747 3.901222 TGTCACTGATGAAGTTACTCCCA 59.099 43.478 0.00 0.00 36.83 4.37
4407 4748 4.246458 GTCACTGATGAAGTTACTCCCAC 58.754 47.826 0.00 0.00 36.83 4.61
4408 4749 4.021016 GTCACTGATGAAGTTACTCCCACT 60.021 45.833 0.00 0.00 36.83 4.00
4409 4750 4.021104 TCACTGATGAAGTTACTCCCACTG 60.021 45.833 0.00 0.00 36.83 3.66
4410 4751 3.904339 ACTGATGAAGTTACTCCCACTGT 59.096 43.478 0.00 0.00 34.57 3.55
4411 4752 4.248859 CTGATGAAGTTACTCCCACTGTG 58.751 47.826 0.00 0.00 0.00 3.66
4412 4753 3.007940 TGATGAAGTTACTCCCACTGTGG 59.992 47.826 20.01 20.01 37.25 4.17
4413 4754 1.071699 TGAAGTTACTCCCACTGTGGC 59.928 52.381 21.47 6.54 35.79 5.01
4414 4755 1.348036 GAAGTTACTCCCACTGTGGCT 59.652 52.381 21.47 8.83 35.79 4.75
4415 4756 2.320681 AGTTACTCCCACTGTGGCTA 57.679 50.000 21.47 10.31 35.79 3.93
4416 4757 2.180276 AGTTACTCCCACTGTGGCTAG 58.820 52.381 21.47 20.51 35.79 3.42
4417 4758 1.900486 GTTACTCCCACTGTGGCTAGT 59.100 52.381 26.22 26.22 35.79 2.57
4418 4759 1.848652 TACTCCCACTGTGGCTAGTC 58.151 55.000 26.56 0.00 35.79 2.59
4484 4825 3.139077 CAGCAGTAACGGAGGAAAAAGT 58.861 45.455 0.00 0.00 0.00 2.66
5007 5358 2.357517 GGCCACGAGACACTGGTG 60.358 66.667 0.00 6.87 39.36 4.17
5358 5710 9.687717 CATTGTTTTGTTATTGATTTTATCGCC 57.312 29.630 0.00 0.00 0.00 5.54
5438 5802 0.878086 AACGCCAACCCGCAAATTTG 60.878 50.000 14.03 14.03 0.00 2.32
5461 5825 3.610040 TCAGCATCTGTTAACGGACAT 57.390 42.857 19.28 5.74 33.47 3.06
5546 5910 5.542635 ACTTCCACCTGACACAAGATAACTA 59.457 40.000 0.00 0.00 0.00 2.24
5548 5912 4.222145 TCCACCTGACACAAGATAACTACC 59.778 45.833 0.00 0.00 0.00 3.18
5723 6096 2.154798 CTCCAAGAAGGGACGCGACA 62.155 60.000 15.93 0.00 38.24 4.35
5751 6124 1.682451 GCTACTGCCCGGACATACCA 61.682 60.000 0.73 0.00 38.90 3.25
6080 6456 1.789576 AACCACCTCCCCACCATCAC 61.790 60.000 0.00 0.00 0.00 3.06
6443 6856 1.963855 CCACGTCGAACCATTGCCA 60.964 57.895 0.00 0.00 0.00 4.92
6492 6905 3.499737 CGCGCAGGAATGTCACCC 61.500 66.667 8.75 0.00 0.00 4.61
6515 6928 1.065418 AGGGTAAAAGCATCGGGTCAG 60.065 52.381 0.00 0.00 0.00 3.51
6520 6933 2.410322 AAAGCATCGGGTCAGCACCA 62.410 55.000 0.00 0.00 45.94 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.703897 TCCCTCGCAAAGTTAATCCTATG 58.296 43.478 0.00 0.00 0.00 2.23
2 3 5.367945 AATCCCTCGCAAAGTTAATCCTA 57.632 39.130 0.00 0.00 0.00 2.94
3 4 3.933861 ATCCCTCGCAAAGTTAATCCT 57.066 42.857 0.00 0.00 0.00 3.24
5 6 6.431198 TGTAAATCCCTCGCAAAGTTAATC 57.569 37.500 0.00 0.00 0.00 1.75
6 7 6.377146 ACATGTAAATCCCTCGCAAAGTTAAT 59.623 34.615 0.00 0.00 0.00 1.40
7 8 5.708230 ACATGTAAATCCCTCGCAAAGTTAA 59.292 36.000 0.00 0.00 0.00 2.01
8 9 5.250200 ACATGTAAATCCCTCGCAAAGTTA 58.750 37.500 0.00 0.00 0.00 2.24
9 10 4.079253 ACATGTAAATCCCTCGCAAAGTT 58.921 39.130 0.00 0.00 0.00 2.66
10 11 3.686016 ACATGTAAATCCCTCGCAAAGT 58.314 40.909 0.00 0.00 0.00 2.66
11 12 3.242413 CGACATGTAAATCCCTCGCAAAG 60.242 47.826 0.00 0.00 0.00 2.77
12 13 2.675844 CGACATGTAAATCCCTCGCAAA 59.324 45.455 0.00 0.00 0.00 3.68
13 14 2.276201 CGACATGTAAATCCCTCGCAA 58.724 47.619 0.00 0.00 0.00 4.85
14 15 1.472552 CCGACATGTAAATCCCTCGCA 60.473 52.381 0.00 0.00 0.00 5.10
15 16 1.217882 CCGACATGTAAATCCCTCGC 58.782 55.000 0.00 0.00 0.00 5.03
16 17 1.217882 GCCGACATGTAAATCCCTCG 58.782 55.000 0.00 0.00 0.00 4.63
17 18 1.594331 GGCCGACATGTAAATCCCTC 58.406 55.000 0.00 0.00 0.00 4.30
18 19 0.179056 CGGCCGACATGTAAATCCCT 60.179 55.000 24.07 0.00 0.00 4.20
19 20 0.463116 ACGGCCGACATGTAAATCCC 60.463 55.000 35.90 0.00 0.00 3.85
20 21 0.655733 CACGGCCGACATGTAAATCC 59.344 55.000 35.90 0.00 0.00 3.01
21 22 0.655733 CCACGGCCGACATGTAAATC 59.344 55.000 35.90 0.00 0.00 2.17
22 23 0.250793 TCCACGGCCGACATGTAAAT 59.749 50.000 35.90 1.64 0.00 1.40
23 24 0.390603 CTCCACGGCCGACATGTAAA 60.391 55.000 35.90 6.59 0.00 2.01
24 25 1.216977 CTCCACGGCCGACATGTAA 59.783 57.895 35.90 9.17 0.00 2.41
34 35 0.383949 TTTCAAAACTGCTCCACGGC 59.616 50.000 0.00 0.00 0.00 5.68
108 118 8.355169 GTTCTAGGTTGTATCATTGTCCGTATA 58.645 37.037 0.00 0.00 0.00 1.47
210 220 0.248843 CTTCTCAGGGTCAGGCTCAC 59.751 60.000 0.00 0.00 0.00 3.51
453 463 1.364626 CCTACAAAGAGCAGCGGCAG 61.365 60.000 12.44 0.00 44.61 4.85
720 730 2.029244 CGCCGTCTTCATCATGTGTTAC 59.971 50.000 0.00 0.00 0.00 2.50
912 940 0.455410 CGAGTCCAGCTCCTTCTCAG 59.545 60.000 0.00 0.00 41.10 3.35
933 983 2.745821 GTTTGGGGAGTCATTAACCGAC 59.254 50.000 0.00 0.00 0.00 4.79
958 1008 5.773680 GTCCAGCAGGTAGGAATATACTGTA 59.226 44.000 0.00 0.00 35.29 2.74
959 1009 4.589374 GTCCAGCAGGTAGGAATATACTGT 59.411 45.833 0.00 0.00 35.29 3.55
960 1010 4.835615 AGTCCAGCAGGTAGGAATATACTG 59.164 45.833 0.00 0.00 35.29 2.74
961 1011 5.081032 GAGTCCAGCAGGTAGGAATATACT 58.919 45.833 0.00 0.00 35.29 2.12
974 1041 1.374758 GGGTGTTCGAGTCCAGCAG 60.375 63.158 11.42 0.00 0.00 4.24
975 1042 2.741092 GGGTGTTCGAGTCCAGCA 59.259 61.111 11.42 0.00 0.00 4.41
976 1043 2.047179 GGGGTGTTCGAGTCCAGC 60.047 66.667 5.30 4.31 0.00 4.85
1001 1068 8.610248 TCGATTAAATTTATTTATCGGCCAGA 57.390 30.769 21.72 0.78 35.91 3.86
1029 1107 2.482333 CGTCGCTAGCTAGGTGGCT 61.482 63.158 25.00 4.09 45.29 4.75
1040 1118 2.823747 AGATATATTGGCACCGTCGCTA 59.176 45.455 0.00 0.00 0.00 4.26
1053 1131 3.022406 GGGTCGCCGGAGTAGATATATT 58.978 50.000 5.05 0.00 0.00 1.28
1060 1138 3.885521 GACGGGTCGCCGGAGTAG 61.886 72.222 5.05 0.00 37.53 2.57
1074 1166 2.594654 CGTCCATCTTTTCTTCTCGACG 59.405 50.000 0.00 0.00 36.34 5.12
1075 1167 3.576648 ACGTCCATCTTTTCTTCTCGAC 58.423 45.455 0.00 0.00 0.00 4.20
1106 1204 2.216750 TAGTTGTAGGTGCGGCGACC 62.217 60.000 12.98 15.70 36.09 4.79
1154 1252 0.449388 GAATGCCAAGCTTCGACTGG 59.551 55.000 0.00 0.00 0.00 4.00
1313 1411 1.371389 GACGTCCGATGCCGATACC 60.371 63.158 3.51 0.00 38.22 2.73
1604 1702 0.036858 GAAGACCAGGTGTGCTCTCC 60.037 60.000 0.00 0.00 0.00 3.71
1616 1714 1.227823 CTGTTGGCGGTGAAGACCA 60.228 57.895 0.00 0.00 43.33 4.02
1628 1726 0.249322 AGGTGACGTTCGTCTGTTGG 60.249 55.000 22.49 0.00 36.23 3.77
1676 1774 0.178973 TGAAGACGACTGAGGGGTCA 60.179 55.000 7.68 0.00 36.12 4.02
1726 1824 1.450312 CCCACTTCATGCCTCGTCC 60.450 63.158 0.00 0.00 0.00 4.79
1886 1984 2.185350 CCCCAGCTGCACTCGTAG 59.815 66.667 8.66 0.00 0.00 3.51
1949 2047 8.202811 TCATGAGGAGAATCTATTTCTGAACTG 58.797 37.037 0.00 0.00 44.88 3.16
1969 2067 3.134262 ACTCTGGTGATGTGGATCATGAG 59.866 47.826 0.09 0.00 40.78 2.90
2024 2137 2.289072 CGGCTCAACCTCTTCTTCTTCA 60.289 50.000 0.00 0.00 35.61 3.02
2078 2191 1.207791 CCTCCTTATCCACTGGTGCT 58.792 55.000 0.00 0.00 0.00 4.40
2081 2194 2.587777 TCTCTCCTCCTTATCCACTGGT 59.412 50.000 0.00 0.00 0.00 4.00
2090 2203 3.117625 TGCGGTAGAATCTCTCCTCCTTA 60.118 47.826 0.00 0.00 0.00 2.69
2288 2404 2.799412 GACCTCATGCTCGTTCATCATC 59.201 50.000 0.00 0.00 0.00 2.92
2303 2419 4.649705 TGCCCGGGGAAGACCTCA 62.650 66.667 25.28 5.74 40.03 3.86
2328 2444 1.648756 CGTCATCTCGAGCGTCGAC 60.649 63.158 7.81 5.18 44.82 4.20
2359 2478 4.823419 CACGCCGCCCGGTTGATA 62.823 66.667 8.66 0.00 42.52 2.15
2387 2506 3.245479 GGTCCTTGGAATTTAGGTTCCCA 60.245 47.826 3.44 0.00 45.73 4.37
2388 2507 3.245479 TGGTCCTTGGAATTTAGGTTCCC 60.245 47.826 3.44 0.00 45.73 3.97
2457 2576 1.226974 CCTCGTCGTCGCATTCCAT 60.227 57.895 0.00 0.00 36.96 3.41
2537 2656 5.343860 CACGTTTGATGATAGTGTACGAACA 59.656 40.000 0.00 0.00 0.00 3.18
2563 2682 2.529151 GTTGCCGTGCATTATTTCCAG 58.471 47.619 0.00 0.00 38.76 3.86
2636 2755 0.883833 CCCACTTGACTTGGATGTGC 59.116 55.000 0.00 0.00 36.02 4.57
2651 2770 3.284449 GTGGTGTCGTTGCCCCAC 61.284 66.667 0.00 0.00 40.47 4.61
2811 2933 7.663081 AGTGACCCTGTATGCAAAATATATGAG 59.337 37.037 0.00 0.00 0.00 2.90
2822 2944 3.719268 AATGAAGTGACCCTGTATGCA 57.281 42.857 0.00 0.00 0.00 3.96
2823 2945 6.699575 ATAAAATGAAGTGACCCTGTATGC 57.300 37.500 0.00 0.00 0.00 3.14
3101 3434 6.001449 TCTCATGGGGTAATACCTGAAAAG 57.999 41.667 9.58 2.92 38.64 2.27
3333 3671 5.698741 ACATCTGTTGGATCATTGTCCTA 57.301 39.130 0.00 0.00 39.12 2.94
3354 3692 0.733150 GCGCCTTGGATGTTCCTAAC 59.267 55.000 0.00 0.00 37.46 2.34
3355 3693 0.742990 CGCGCCTTGGATGTTCCTAA 60.743 55.000 0.00 0.00 37.46 2.69
3362 3700 3.976701 AACCCTCGCGCCTTGGATG 62.977 63.158 0.00 0.00 0.00 3.51
3374 3712 1.671379 GCCACCGTCTTCAACCCTC 60.671 63.158 0.00 0.00 0.00 4.30
3427 3765 2.482333 CCCAACCGGTTTGTTCGCA 61.482 57.895 19.55 0.00 32.71 5.10
3428 3766 2.333581 CCCAACCGGTTTGTTCGC 59.666 61.111 19.55 0.00 32.71 4.70
3429 3767 1.357334 CACCCAACCGGTTTGTTCG 59.643 57.895 19.55 5.79 45.36 3.95
3470 3808 1.930371 GCCAACACTTGAATTGCCGAC 60.930 52.381 0.00 0.00 0.00 4.79
3475 3813 2.666619 GCTCGAGCCAACACTTGAATTG 60.667 50.000 27.22 0.00 34.31 2.32
3476 3814 1.537202 GCTCGAGCCAACACTTGAATT 59.463 47.619 27.22 0.00 34.31 2.17
3477 3815 1.160137 GCTCGAGCCAACACTTGAAT 58.840 50.000 27.22 0.00 34.31 2.57
3515 3856 2.727916 CGAGATTGACGTCGATGTGTGA 60.728 50.000 23.05 0.72 38.50 3.58
3517 3858 1.467543 CCGAGATTGACGTCGATGTGT 60.468 52.381 23.05 7.27 38.50 3.72
3525 3866 1.338674 TGGCAAATCCGAGATTGACGT 60.339 47.619 0.00 0.00 37.37 4.34
3532 3873 1.746615 GCAGCTGGCAAATCCGAGA 60.747 57.895 17.12 0.00 43.97 4.04
3552 3893 3.132646 ACTTCAACAACATTGTGCATGGT 59.867 39.130 0.00 0.00 41.31 3.55
3576 3917 1.450134 CCAAGGCTACATGCGCAGA 60.450 57.895 18.32 2.30 44.05 4.26
3579 3920 2.438434 ACCCAAGGCTACATGCGC 60.438 61.111 0.00 0.00 44.05 6.09
3588 3929 1.375523 CGTGACTACCACCCAAGGC 60.376 63.158 0.00 0.00 42.76 4.35
3620 3961 3.302347 CTCCGTGACAGTGCCCTCC 62.302 68.421 0.00 0.00 0.00 4.30
3722 4063 4.655440 TTTTAACGTGTCATCATCACCG 57.345 40.909 0.00 0.00 32.86 4.94
3758 4099 2.568003 CGGAGGACTCTGCACTACA 58.432 57.895 0.00 0.00 0.00 2.74
4095 4436 5.092554 TGACAAACACCTGTGAAAGTAGA 57.907 39.130 3.94 0.00 0.00 2.59
4096 4437 6.377327 AATGACAAACACCTGTGAAAGTAG 57.623 37.500 3.94 0.00 0.00 2.57
4160 4501 4.852134 TGTGGCTAGTCTAACGTTTGTA 57.148 40.909 5.91 0.00 0.00 2.41
4171 4512 5.479306 TGTTACTCTTCATTGTGGCTAGTC 58.521 41.667 0.00 0.00 0.00 2.59
4172 4513 5.483685 TGTTACTCTTCATTGTGGCTAGT 57.516 39.130 0.00 0.00 0.00 2.57
4174 4515 8.700973 TGTATATGTTACTCTTCATTGTGGCTA 58.299 33.333 0.00 0.00 0.00 3.93
4175 4516 7.564793 TGTATATGTTACTCTTCATTGTGGCT 58.435 34.615 0.00 0.00 0.00 4.75
4176 4517 7.786178 TGTATATGTTACTCTTCATTGTGGC 57.214 36.000 0.00 0.00 0.00 5.01
4209 4550 9.893975 ACCCACTATGAAGGTAGTAATATAGTT 57.106 33.333 0.00 0.00 33.29 2.24
4239 4580 9.927668 GGCTTTGCATGTTACCATATTTATATT 57.072 29.630 0.00 0.00 0.00 1.28
4240 4581 9.312904 AGGCTTTGCATGTTACCATATTTATAT 57.687 29.630 0.00 0.00 0.00 0.86
4241 4582 8.704849 AGGCTTTGCATGTTACCATATTTATA 57.295 30.769 0.00 0.00 0.00 0.98
4242 4583 7.287466 TGAGGCTTTGCATGTTACCATATTTAT 59.713 33.333 0.00 0.00 0.00 1.40
4243 4584 6.605194 TGAGGCTTTGCATGTTACCATATTTA 59.395 34.615 0.00 0.00 0.00 1.40
4244 4585 5.421693 TGAGGCTTTGCATGTTACCATATTT 59.578 36.000 0.00 0.00 0.00 1.40
4245 4586 4.955450 TGAGGCTTTGCATGTTACCATATT 59.045 37.500 0.00 0.00 0.00 1.28
4246 4587 4.535781 TGAGGCTTTGCATGTTACCATAT 58.464 39.130 0.00 0.00 0.00 1.78
4247 4588 3.961849 TGAGGCTTTGCATGTTACCATA 58.038 40.909 0.00 0.00 0.00 2.74
4248 4589 2.806434 TGAGGCTTTGCATGTTACCAT 58.194 42.857 0.00 0.00 0.00 3.55
4249 4590 2.284754 TGAGGCTTTGCATGTTACCA 57.715 45.000 0.00 0.00 0.00 3.25
4250 4591 3.874392 AATGAGGCTTTGCATGTTACC 57.126 42.857 0.00 0.00 0.00 2.85
4251 4592 8.405531 TCTAATAAATGAGGCTTTGCATGTTAC 58.594 33.333 0.00 0.00 0.00 2.50
4252 4593 8.518430 TCTAATAAATGAGGCTTTGCATGTTA 57.482 30.769 0.00 0.00 0.00 2.41
4253 4594 7.408756 TCTAATAAATGAGGCTTTGCATGTT 57.591 32.000 0.00 0.00 0.00 2.71
4254 4595 7.592885 ATCTAATAAATGAGGCTTTGCATGT 57.407 32.000 0.00 0.00 0.00 3.21
4279 4620 9.649167 CATGTCTCAATGCAATATGAGTCTATA 57.351 33.333 20.36 6.88 42.86 1.31
4280 4621 8.155510 ACATGTCTCAATGCAATATGAGTCTAT 58.844 33.333 20.36 13.30 42.86 1.98
4281 4622 7.440255 CACATGTCTCAATGCAATATGAGTCTA 59.560 37.037 20.36 12.13 42.86 2.59
4282 4623 6.260271 CACATGTCTCAATGCAATATGAGTCT 59.740 38.462 20.36 9.05 42.86 3.24
4283 4624 6.427974 CACATGTCTCAATGCAATATGAGTC 58.572 40.000 20.36 16.98 42.86 3.36
4284 4625 5.298527 CCACATGTCTCAATGCAATATGAGT 59.701 40.000 20.36 5.71 42.86 3.41
4285 4626 5.298527 ACCACATGTCTCAATGCAATATGAG 59.701 40.000 17.01 17.01 43.51 2.90
4286 4627 5.066764 CACCACATGTCTCAATGCAATATGA 59.933 40.000 0.00 0.00 0.00 2.15
4287 4628 5.163591 ACACCACATGTCTCAATGCAATATG 60.164 40.000 0.00 0.00 36.54 1.78
4288 4629 4.951715 ACACCACATGTCTCAATGCAATAT 59.048 37.500 0.00 0.00 36.54 1.28
4289 4630 4.334552 ACACCACATGTCTCAATGCAATA 58.665 39.130 0.00 0.00 36.54 1.90
4290 4631 3.159472 ACACCACATGTCTCAATGCAAT 58.841 40.909 0.00 0.00 36.54 3.56
4291 4632 2.585330 ACACCACATGTCTCAATGCAA 58.415 42.857 0.00 0.00 36.54 4.08
4292 4633 2.275134 ACACCACATGTCTCAATGCA 57.725 45.000 0.00 0.00 36.54 3.96
4293 4634 3.501828 TGTAACACCACATGTCTCAATGC 59.498 43.478 0.00 0.00 42.31 3.56
4294 4635 4.756642 ACTGTAACACCACATGTCTCAATG 59.243 41.667 0.00 0.00 42.31 2.82
4295 4636 4.973168 ACTGTAACACCACATGTCTCAAT 58.027 39.130 0.00 0.00 42.31 2.57
4296 4637 4.415881 ACTGTAACACCACATGTCTCAA 57.584 40.909 0.00 0.00 42.31 3.02
4297 4638 5.069914 AGTTACTGTAACACCACATGTCTCA 59.930 40.000 27.12 0.00 42.31 3.27
4298 4639 5.539048 AGTTACTGTAACACCACATGTCTC 58.461 41.667 27.12 1.55 42.31 3.36
4299 4640 5.546621 AGTTACTGTAACACCACATGTCT 57.453 39.130 27.12 5.02 42.31 3.41
4300 4641 6.927381 AGTTAGTTACTGTAACACCACATGTC 59.073 38.462 27.12 10.44 41.07 3.06
4301 4642 6.823497 AGTTAGTTACTGTAACACCACATGT 58.177 36.000 27.12 10.64 41.07 3.21
4302 4643 8.706035 GTTAGTTAGTTACTGTAACACCACATG 58.294 37.037 27.12 0.00 41.07 3.21
4303 4644 8.645110 AGTTAGTTAGTTACTGTAACACCACAT 58.355 33.333 27.12 11.85 41.07 3.21
4304 4645 8.010733 AGTTAGTTAGTTACTGTAACACCACA 57.989 34.615 27.12 10.61 41.07 4.17
4305 4646 8.877808 AAGTTAGTTAGTTACTGTAACACCAC 57.122 34.615 27.12 20.09 41.07 4.16
4306 4647 9.965824 GTAAGTTAGTTAGTTACTGTAACACCA 57.034 33.333 27.12 12.70 41.07 4.17
4319 4660 9.585369 AGAGGTAGTTTGAGTAAGTTAGTTAGT 57.415 33.333 0.00 0.00 0.00 2.24
4321 4662 9.804977 AGAGAGGTAGTTTGAGTAAGTTAGTTA 57.195 33.333 0.00 0.00 0.00 2.24
4322 4663 8.709272 AGAGAGGTAGTTTGAGTAAGTTAGTT 57.291 34.615 0.00 0.00 0.00 2.24
4323 4664 8.709272 AAGAGAGGTAGTTTGAGTAAGTTAGT 57.291 34.615 0.00 0.00 0.00 2.24
4324 4665 9.016438 AGAAGAGAGGTAGTTTGAGTAAGTTAG 57.984 37.037 0.00 0.00 0.00 2.34
4325 4666 8.937207 AGAAGAGAGGTAGTTTGAGTAAGTTA 57.063 34.615 0.00 0.00 0.00 2.24
4326 4667 7.506261 TGAGAAGAGAGGTAGTTTGAGTAAGTT 59.494 37.037 0.00 0.00 0.00 2.66
4327 4668 7.005296 TGAGAAGAGAGGTAGTTTGAGTAAGT 58.995 38.462 0.00 0.00 0.00 2.24
4328 4669 7.455641 TGAGAAGAGAGGTAGTTTGAGTAAG 57.544 40.000 0.00 0.00 0.00 2.34
4329 4670 8.423906 AATGAGAAGAGAGGTAGTTTGAGTAA 57.576 34.615 0.00 0.00 0.00 2.24
4330 4671 9.529823 TTAATGAGAAGAGAGGTAGTTTGAGTA 57.470 33.333 0.00 0.00 0.00 2.59
4331 4672 6.926630 AATGAGAAGAGAGGTAGTTTGAGT 57.073 37.500 0.00 0.00 0.00 3.41
4332 4673 8.527810 AGTTAATGAGAAGAGAGGTAGTTTGAG 58.472 37.037 0.00 0.00 0.00 3.02
4333 4674 8.423906 AGTTAATGAGAAGAGAGGTAGTTTGA 57.576 34.615 0.00 0.00 0.00 2.69
4334 4675 8.307483 TGAGTTAATGAGAAGAGAGGTAGTTTG 58.693 37.037 0.00 0.00 0.00 2.93
4335 4676 8.423906 TGAGTTAATGAGAAGAGAGGTAGTTT 57.576 34.615 0.00 0.00 0.00 2.66
4336 4677 8.602472 ATGAGTTAATGAGAAGAGAGGTAGTT 57.398 34.615 0.00 0.00 0.00 2.24
4337 4678 8.474025 CAATGAGTTAATGAGAAGAGAGGTAGT 58.526 37.037 0.00 0.00 0.00 2.73
4338 4679 7.437862 GCAATGAGTTAATGAGAAGAGAGGTAG 59.562 40.741 0.00 0.00 0.00 3.18
4339 4680 7.268586 GCAATGAGTTAATGAGAAGAGAGGTA 58.731 38.462 0.00 0.00 0.00 3.08
4340 4681 6.112058 GCAATGAGTTAATGAGAAGAGAGGT 58.888 40.000 0.00 0.00 0.00 3.85
4341 4682 5.526846 GGCAATGAGTTAATGAGAAGAGAGG 59.473 44.000 0.00 0.00 0.00 3.69
4342 4683 6.036953 GTGGCAATGAGTTAATGAGAAGAGAG 59.963 42.308 0.00 0.00 0.00 3.20
4343 4684 5.877012 GTGGCAATGAGTTAATGAGAAGAGA 59.123 40.000 0.00 0.00 0.00 3.10
4344 4685 5.645067 TGTGGCAATGAGTTAATGAGAAGAG 59.355 40.000 0.00 0.00 0.00 2.85
4345 4686 5.559770 TGTGGCAATGAGTTAATGAGAAGA 58.440 37.500 0.00 0.00 0.00 2.87
4346 4687 5.885230 TGTGGCAATGAGTTAATGAGAAG 57.115 39.130 0.00 0.00 0.00 2.85
4347 4688 6.433716 TCAATGTGGCAATGAGTTAATGAGAA 59.566 34.615 0.00 0.00 0.00 2.87
4348 4689 5.945191 TCAATGTGGCAATGAGTTAATGAGA 59.055 36.000 0.00 0.00 0.00 3.27
4349 4690 6.198650 TCAATGTGGCAATGAGTTAATGAG 57.801 37.500 0.00 0.00 0.00 2.90
4350 4691 6.198650 CTCAATGTGGCAATGAGTTAATGA 57.801 37.500 14.65 0.00 36.84 2.57
4357 4698 2.821378 TCCAACTCAATGTGGCAATGAG 59.179 45.455 19.00 19.00 44.29 2.90
4358 4699 2.557924 GTCCAACTCAATGTGGCAATGA 59.442 45.455 0.00 0.00 0.00 2.57
4359 4700 2.559668 AGTCCAACTCAATGTGGCAATG 59.440 45.455 0.00 0.00 0.00 2.82
4360 4701 2.821969 GAGTCCAACTCAATGTGGCAAT 59.178 45.455 2.28 0.00 44.45 3.56
4361 4702 2.229792 GAGTCCAACTCAATGTGGCAA 58.770 47.619 2.28 0.00 44.45 4.52
4362 4703 1.877680 CGAGTCCAACTCAATGTGGCA 60.878 52.381 7.78 0.00 45.30 4.92
4363 4704 0.798776 CGAGTCCAACTCAATGTGGC 59.201 55.000 7.78 0.00 45.30 5.01
4364 4705 2.455674 TCGAGTCCAACTCAATGTGG 57.544 50.000 7.78 0.00 45.30 4.17
4366 4707 3.685139 ACATCGAGTCCAACTCAATGT 57.315 42.857 7.65 7.65 45.23 2.71
4367 4708 3.369147 GTGACATCGAGTCCAACTCAATG 59.631 47.826 6.50 6.50 45.30 2.82
4368 4709 3.259374 AGTGACATCGAGTCCAACTCAAT 59.741 43.478 7.78 0.00 45.30 2.57
4369 4710 2.628178 AGTGACATCGAGTCCAACTCAA 59.372 45.455 7.78 0.00 45.30 3.02
4370 4711 2.029918 CAGTGACATCGAGTCCAACTCA 60.030 50.000 7.78 0.00 45.30 3.41
4378 4719 4.527509 AACTTCATCAGTGACATCGAGT 57.472 40.909 0.00 0.00 35.12 4.18
4379 4720 5.645624 AGTAACTTCATCAGTGACATCGAG 58.354 41.667 0.00 0.00 39.26 4.04
4380 4721 5.393135 GGAGTAACTTCATCAGTGACATCGA 60.393 44.000 0.00 0.00 39.26 3.59
4381 4722 4.800993 GGAGTAACTTCATCAGTGACATCG 59.199 45.833 0.00 0.00 39.26 3.84
4382 4723 5.112686 GGGAGTAACTTCATCAGTGACATC 58.887 45.833 0.00 0.00 39.26 3.06
4383 4724 4.532126 TGGGAGTAACTTCATCAGTGACAT 59.468 41.667 0.00 0.00 39.26 3.06
4384 4725 3.901222 TGGGAGTAACTTCATCAGTGACA 59.099 43.478 0.00 0.00 39.26 3.58
4385 4726 4.021016 AGTGGGAGTAACTTCATCAGTGAC 60.021 45.833 0.00 0.00 37.14 3.67
4386 4727 4.021104 CAGTGGGAGTAACTTCATCAGTGA 60.021 45.833 0.00 0.00 35.12 3.41
4387 4728 4.248859 CAGTGGGAGTAACTTCATCAGTG 58.751 47.826 0.00 0.00 35.12 3.66
4388 4729 3.904339 ACAGTGGGAGTAACTTCATCAGT 59.096 43.478 0.00 0.00 37.30 3.41
4389 4730 4.248859 CACAGTGGGAGTAACTTCATCAG 58.751 47.826 0.00 0.00 0.00 2.90
4390 4731 3.007940 CCACAGTGGGAGTAACTTCATCA 59.992 47.826 12.40 0.00 32.67 3.07
4391 4732 3.600388 CCACAGTGGGAGTAACTTCATC 58.400 50.000 12.40 0.00 32.67 2.92
4392 4733 2.290323 GCCACAGTGGGAGTAACTTCAT 60.290 50.000 21.77 0.00 38.19 2.57
4393 4734 1.071699 GCCACAGTGGGAGTAACTTCA 59.928 52.381 21.77 0.00 38.19 3.02
4394 4735 1.348036 AGCCACAGTGGGAGTAACTTC 59.652 52.381 21.77 0.78 38.19 3.01
4395 4736 1.435256 AGCCACAGTGGGAGTAACTT 58.565 50.000 21.77 0.00 38.19 2.66
4396 4737 2.180276 CTAGCCACAGTGGGAGTAACT 58.820 52.381 21.77 10.69 38.19 2.24
4397 4738 1.900486 ACTAGCCACAGTGGGAGTAAC 59.100 52.381 21.77 3.06 38.19 2.50
4398 4739 2.176889 GACTAGCCACAGTGGGAGTAA 58.823 52.381 21.77 0.00 38.19 2.24
4399 4740 1.358103 AGACTAGCCACAGTGGGAGTA 59.642 52.381 21.77 0.00 38.19 2.59
4400 4741 0.115349 AGACTAGCCACAGTGGGAGT 59.885 55.000 21.77 2.87 38.19 3.85
4401 4742 1.270907 AAGACTAGCCACAGTGGGAG 58.729 55.000 21.77 0.00 38.19 4.30
4402 4743 2.565834 GTTAAGACTAGCCACAGTGGGA 59.434 50.000 21.77 0.00 38.19 4.37
4403 4744 2.354805 GGTTAAGACTAGCCACAGTGGG 60.355 54.545 21.77 7.25 38.19 4.61
4404 4745 2.301870 TGGTTAAGACTAGCCACAGTGG 59.698 50.000 16.16 16.16 41.55 4.00
4405 4746 3.006967 ACTGGTTAAGACTAGCCACAGTG 59.993 47.826 0.00 0.00 37.86 3.66
4406 4747 3.006967 CACTGGTTAAGACTAGCCACAGT 59.993 47.826 0.00 0.00 37.86 3.55
4407 4748 3.589988 CACTGGTTAAGACTAGCCACAG 58.410 50.000 0.00 0.00 37.86 3.66
4408 4749 2.289444 GCACTGGTTAAGACTAGCCACA 60.289 50.000 0.00 0.00 37.86 4.17
4409 4750 2.028020 AGCACTGGTTAAGACTAGCCAC 60.028 50.000 0.00 0.00 37.86 5.01
4410 4751 2.257207 AGCACTGGTTAAGACTAGCCA 58.743 47.619 0.00 0.00 37.86 4.75
4411 4752 3.738590 GCTAGCACTGGTTAAGACTAGCC 60.739 52.174 10.63 0.00 45.88 3.93
4412 4753 3.449632 GCTAGCACTGGTTAAGACTAGC 58.550 50.000 10.63 12.75 45.72 3.42
4413 4754 4.642885 AGAGCTAGCACTGGTTAAGACTAG 59.357 45.833 18.83 0.00 39.99 2.57
4414 4755 4.601084 AGAGCTAGCACTGGTTAAGACTA 58.399 43.478 18.83 0.00 0.00 2.59
4415 4756 3.436243 AGAGCTAGCACTGGTTAAGACT 58.564 45.455 18.83 0.00 0.00 3.24
4416 4757 3.878160 AGAGCTAGCACTGGTTAAGAC 57.122 47.619 18.83 0.00 0.00 3.01
4417 4758 4.040461 ACAAAGAGCTAGCACTGGTTAAGA 59.960 41.667 18.83 0.00 0.00 2.10
4418 4759 4.319177 ACAAAGAGCTAGCACTGGTTAAG 58.681 43.478 18.83 5.96 0.00 1.85
4484 4825 3.842007 TTCTGAACCGTCTTAACCCAA 57.158 42.857 0.00 0.00 0.00 4.12
4795 5146 2.308690 GAAGGAGCGATAGTACACCCT 58.691 52.381 0.00 0.00 39.35 4.34
4796 5147 1.001597 CGAAGGAGCGATAGTACACCC 60.002 57.143 0.00 0.00 39.35 4.61
4911 5262 4.379243 AGCAGGCTTGACGTCCCG 62.379 66.667 14.12 4.90 0.00 5.14
5341 5692 8.774586 AGTACATCTGGCGATAAAATCAATAAC 58.225 33.333 0.00 0.00 0.00 1.89
5356 5708 5.770663 TGGAGTATTCTCTAGTACATCTGGC 59.229 44.000 0.00 0.00 40.29 4.85
5358 5710 8.296000 CACATGGAGTATTCTCTAGTACATCTG 58.704 40.741 0.00 0.00 40.29 2.90
5438 5802 2.094417 GTCCGTTAACAGATGCTGAAGC 59.906 50.000 6.39 0.00 42.50 3.86
5441 5805 3.056179 TCATGTCCGTTAACAGATGCTGA 60.056 43.478 6.39 2.32 35.18 4.26
5452 5816 0.252330 TCCCCCACTCATGTCCGTTA 60.252 55.000 0.00 0.00 0.00 3.18
5455 5819 2.735772 CCTCCCCCACTCATGTCCG 61.736 68.421 0.00 0.00 0.00 4.79
5531 5895 2.498481 CCCCGGTAGTTATCTTGTGTCA 59.502 50.000 0.00 0.00 0.00 3.58
5546 5910 2.660258 GATATGCTGTTCGCCCCGGT 62.660 60.000 0.00 0.00 38.05 5.28
5548 5912 0.813610 TTGATATGCTGTTCGCCCCG 60.814 55.000 0.00 0.00 38.05 5.73
5723 6096 1.783031 CGGGCAGTAGCGTCGTCTAT 61.783 60.000 0.00 0.00 43.41 1.98
5735 6108 1.048601 CTATGGTATGTCCGGGCAGT 58.951 55.000 16.89 5.50 39.52 4.40
5766 6139 4.003788 CCACTCCCTTCCGCGTGT 62.004 66.667 4.92 0.00 0.00 4.49
6104 6480 1.878522 CGGACGGCTACTGTGATGC 60.879 63.158 0.00 0.00 0.00 3.91
6350 6763 2.178273 GTCGTTGGCGGCAAATCC 59.822 61.111 27.23 13.25 43.09 3.01
6492 6905 0.814010 CCCGATGCTTTTACCCTCCG 60.814 60.000 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.