Multiple sequence alignment - TraesCS2B01G595500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G595500 chr2B 100.000 3638 0 0 1 3638 779364108 779367745 0.000000e+00 6719.0
1 TraesCS2B01G595500 chr2B 90.235 1321 89 22 939 2253 675716671 675717957 0.000000e+00 1688.0
2 TraesCS2B01G595500 chr2B 85.902 915 68 18 1533 2430 601745273 601746143 0.000000e+00 918.0
3 TraesCS2B01G595500 chr2B 91.837 343 24 3 941 1282 601739319 601739658 3.290000e-130 475.0
4 TraesCS2B01G595500 chr2B 92.558 215 11 3 1278 1492 601745066 601745275 1.640000e-78 303.0
5 TraesCS2B01G595500 chr2B 87.435 191 19 4 421 607 601739122 601739311 7.910000e-52 215.0
6 TraesCS2B01G595500 chr2B 88.043 184 18 2 428 607 675716494 675716677 7.910000e-52 215.0
7 TraesCS2B01G595500 chr2B 97.959 49 0 1 3206 3253 779367269 779367317 2.330000e-12 84.2
8 TraesCS2B01G595500 chr2B 97.959 49 0 1 3162 3210 779367313 779367360 2.330000e-12 84.2
9 TraesCS2B01G595500 chr2D 94.943 2373 49 19 889 3210 635262931 635265283 0.000000e+00 3651.0
10 TraesCS2B01G595500 chr2D 88.792 687 48 7 1643 2304 564473694 564474376 0.000000e+00 815.0
11 TraesCS2B01G595500 chr2D 91.815 562 42 3 1097 1654 564472894 564473455 0.000000e+00 780.0
12 TraesCS2B01G595500 chr2D 86.975 476 9 8 441 863 635262057 635262532 1.520000e-133 486.0
13 TraesCS2B01G595500 chr2D 91.331 323 24 2 958 1280 601804304 601803986 4.310000e-119 438.0
14 TraesCS2B01G595500 chr2D 97.452 157 3 1 3482 3638 635265922 635266077 2.150000e-67 267.0
15 TraesCS2B01G595500 chr2D 95.455 132 6 0 3211 3342 635265241 635265372 1.020000e-50 211.0
16 TraesCS2B01G595500 chr2D 86.264 182 21 3 430 607 601804502 601804321 1.030000e-45 195.0
17 TraesCS2B01G595500 chr2D 89.634 164 1 1 3343 3490 635265428 635265591 1.030000e-45 195.0
18 TraesCS2B01G595500 chr2D 94.444 108 6 0 1 108 635261824 635261931 2.250000e-37 167.0
19 TraesCS2B01G595500 chr4B 89.629 781 59 8 1697 2468 22444316 22443549 0.000000e+00 974.0
20 TraesCS2B01G595500 chr4B 87.602 613 46 10 1097 1704 22445081 22444494 0.000000e+00 684.0
21 TraesCS2B01G595500 chr3D 84.932 584 57 11 1862 2435 482748833 482748271 2.450000e-156 562.0
22 TraesCS2B01G595500 chr3D 93.351 376 21 3 1299 1674 482831835 482831464 1.480000e-153 553.0
23 TraesCS2B01G595500 chr3D 89.241 316 25 7 958 1265 482832142 482831828 1.580000e-103 387.0
24 TraesCS2B01G595500 chr3D 91.795 195 16 0 1679 1873 482762507 482762313 4.630000e-69 272.0
25 TraesCS2B01G595500 chr3D 87.222 180 21 2 430 607 482832338 482832159 1.710000e-48 204.0
26 TraesCS2B01G595500 chr4A 93.067 375 18 4 1299 1673 30781415 30781781 3.200000e-150 542.0
27 TraesCS2B01G595500 chr4A 83.102 361 39 8 1862 2222 30866501 30866839 3.530000e-80 309.0
28 TraesCS2B01G595500 chr4A 94.872 195 10 0 1676 1870 30810525 30810719 4.560000e-79 305.0
29 TraesCS2B01G595500 chr4A 84.656 189 25 3 420 604 30780908 30781096 6.200000e-43 185.0
30 TraesCS2B01G595500 chr6D 92.027 301 20 3 133 432 382124280 382123983 1.560000e-113 420.0
31 TraesCS2B01G595500 chr6D 90.526 285 19 4 1001 1280 428290230 428290511 1.600000e-98 370.0
32 TraesCS2B01G595500 chr6D 91.071 168 15 0 1507 1674 428290512 428290679 1.020000e-55 228.0
33 TraesCS2B01G595500 chr3B 92.517 294 19 3 132 424 756674847 756675138 5.620000e-113 418.0
34 TraesCS2B01G595500 chr3B 91.275 298 23 2 127 423 41426475 41426180 1.570000e-108 403.0
35 TraesCS2B01G595500 chr5A 92.230 296 19 3 131 424 598982497 598982204 2.020000e-112 416.0
36 TraesCS2B01G595500 chr4D 92.466 292 19 2 133 423 473193276 473193565 7.270000e-112 414.0
37 TraesCS2B01G595500 chr3A 92.123 292 20 2 133 423 669949001 669949290 3.380000e-110 409.0
38 TraesCS2B01G595500 chr3A 89.041 73 6 1 887 959 501724598 501724668 5.000000e-14 89.8
39 TraesCS2B01G595500 chr5D 92.361 288 19 3 135 421 72764101 72764386 1.220000e-109 407.0
40 TraesCS2B01G595500 chr5D 92.308 52 3 1 887 938 321857782 321857832 5.040000e-09 73.1
41 TraesCS2B01G595500 chr2A 91.809 293 21 2 132 423 188032350 188032060 4.370000e-109 405.0
42 TraesCS2B01G595500 chr1A 91.304 299 22 3 125 421 27754256 27754552 4.370000e-109 405.0
43 TraesCS2B01G595500 chr1A 97.727 44 1 0 896 939 589989147 589989190 3.900000e-10 76.8
44 TraesCS2B01G595500 chr6A 92.079 101 8 0 1574 1674 561576544 561576444 3.790000e-30 143.0
45 TraesCS2B01G595500 chr6A 100.000 41 0 0 1006 1046 561463450 561463410 3.900000e-10 76.8
46 TraesCS2B01G595500 chr6A 100.000 41 0 0 1006 1046 561576607 561576647 3.900000e-10 76.8
47 TraesCS2B01G595500 chrUn 94.000 50 3 0 889 938 338578116 338578067 3.900000e-10 76.8
48 TraesCS2B01G595500 chr1D 92.453 53 3 1 887 939 460822075 460822024 1.400000e-09 75.0
49 TraesCS2B01G595500 chr1D 90.385 52 4 1 887 938 420714646 420714596 2.340000e-07 67.6
50 TraesCS2B01G595500 chr5B 92.308 52 2 2 887 938 372826755 372826804 5.040000e-09 73.1
51 TraesCS2B01G595500 chr7A 92.000 50 4 0 889 938 671199820 671199869 1.810000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G595500 chr2B 779364108 779367745 3637 False 2295.800000 6719 98.639333 1 3638 3 chr2B.!!$F4 3637
1 TraesCS2B01G595500 chr2B 675716494 675717957 1463 False 951.500000 1688 89.139000 428 2253 2 chr2B.!!$F3 1825
2 TraesCS2B01G595500 chr2B 601745066 601746143 1077 False 610.500000 918 89.230000 1278 2430 2 chr2B.!!$F2 1152
3 TraesCS2B01G595500 chr2B 601739122 601739658 536 False 345.000000 475 89.636000 421 1282 2 chr2B.!!$F1 861
4 TraesCS2B01G595500 chr2D 635261824 635266077 4253 False 829.500000 3651 93.150500 1 3638 6 chr2D.!!$F2 3637
5 TraesCS2B01G595500 chr2D 564472894 564474376 1482 False 797.500000 815 90.303500 1097 2304 2 chr2D.!!$F1 1207
6 TraesCS2B01G595500 chr2D 601803986 601804502 516 True 316.500000 438 88.797500 430 1280 2 chr2D.!!$R1 850
7 TraesCS2B01G595500 chr4B 22443549 22445081 1532 True 829.000000 974 88.615500 1097 2468 2 chr4B.!!$R1 1371
8 TraesCS2B01G595500 chr3D 482748271 482748833 562 True 562.000000 562 84.932000 1862 2435 1 chr3D.!!$R1 573
9 TraesCS2B01G595500 chr3D 482831464 482832338 874 True 381.333333 553 89.938000 430 1674 3 chr3D.!!$R3 1244
10 TraesCS2B01G595500 chr4A 30780908 30781781 873 False 363.500000 542 88.861500 420 1673 2 chr4A.!!$F3 1253

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
313 314 0.105760 TGCAAGGGGTGTTGGTTCAT 60.106 50.000 0.00 0.00 0.00 2.57 F
314 315 0.318120 GCAAGGGGTGTTGGTTCATG 59.682 55.000 0.00 0.00 0.00 3.07 F
776 833 1.227497 CAATCCGCTCAGAGCCTCC 60.227 63.158 17.16 0.00 38.18 4.30 F
1998 2919 0.749049 GGGCATTCTTGGAATCCTGC 59.251 55.000 0.00 0.96 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1287 1732 0.321564 TGGAGAAAGCGGTGATGGTG 60.322 55.000 0.00 0.00 0.00 4.17 R
1552 2009 4.141846 TGTCAGATAGTCCAATTCCAGCTC 60.142 45.833 0.00 0.00 0.00 4.09 R
2556 3488 0.806102 CTGTGGAACCGATAGCACCG 60.806 60.000 0.00 0.00 34.36 4.94 R
3197 4177 0.318445 GCAGCAGCTGTTGGACTTTG 60.318 55.000 28.73 5.15 37.91 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 9.345517 CCTGTTTGATATTTAATGCGATATTGG 57.654 33.333 0.00 0.00 0.00 3.16
69 70 7.389803 CCATGTCATATGGTAAACACAGAAA 57.610 36.000 2.13 0.00 34.56 2.52
74 75 8.729756 TGTCATATGGTAAACACAGAAATCTTG 58.270 33.333 2.13 0.00 0.00 3.02
108 109 9.474313 TTTGGGCATTTAATAGAGATTTGTACT 57.526 29.630 0.00 0.00 0.00 2.73
109 110 9.474313 TTGGGCATTTAATAGAGATTTGTACTT 57.526 29.630 0.00 0.00 0.00 2.24
122 123 9.606631 AGAGATTTGTACTTATTGTGATCCTTC 57.393 33.333 0.00 0.00 0.00 3.46
123 124 9.606631 GAGATTTGTACTTATTGTGATCCTTCT 57.393 33.333 0.00 0.00 0.00 2.85
125 126 9.994432 GATTTGTACTTATTGTGATCCTTCTTG 57.006 33.333 0.00 0.00 0.00 3.02
128 129 8.997621 TGTACTTATTGTGATCCTTCTTGTAC 57.002 34.615 0.00 0.00 0.00 2.90
129 130 8.812972 TGTACTTATTGTGATCCTTCTTGTACT 58.187 33.333 0.00 0.00 0.00 2.73
131 132 8.553459 ACTTATTGTGATCCTTCTTGTACTTG 57.447 34.615 0.00 0.00 0.00 3.16
132 133 8.157476 ACTTATTGTGATCCTTCTTGTACTTGT 58.843 33.333 0.00 0.00 0.00 3.16
137 138 7.378966 TGTGATCCTTCTTGTACTTGTAAGAG 58.621 38.462 0.00 0.00 34.68 2.85
138 139 6.311690 GTGATCCTTCTTGTACTTGTAAGAGC 59.688 42.308 0.00 0.00 34.68 4.09
139 140 5.801531 TCCTTCTTGTACTTGTAAGAGCA 57.198 39.130 0.00 0.00 34.68 4.26
140 141 6.360370 TCCTTCTTGTACTTGTAAGAGCAT 57.640 37.500 0.00 0.00 34.68 3.79
162 163 8.616076 AGCATCTTCAATAGTTTGTATGTTAGC 58.384 33.333 0.00 0.00 34.32 3.09
163 164 8.616076 GCATCTTCAATAGTTTGTATGTTAGCT 58.384 33.333 0.00 0.00 34.32 3.32
166 167 9.502091 TCTTCAATAGTTTGTATGTTAGCTTGT 57.498 29.630 0.00 0.00 34.32 3.16
168 169 9.891828 TTCAATAGTTTGTATGTTAGCTTGTTG 57.108 29.630 0.00 0.00 34.32 3.33
169 170 8.511321 TCAATAGTTTGTATGTTAGCTTGTTGG 58.489 33.333 0.00 0.00 34.32 3.77
172 173 7.811117 AGTTTGTATGTTAGCTTGTTGGTAA 57.189 32.000 0.00 0.00 36.42 2.85
173 174 8.228035 AGTTTGTATGTTAGCTTGTTGGTAAA 57.772 30.769 0.00 0.00 39.88 2.01
174 175 8.688151 AGTTTGTATGTTAGCTTGTTGGTAAAA 58.312 29.630 0.00 0.00 39.88 1.52
175 176 9.471084 GTTTGTATGTTAGCTTGTTGGTAAAAT 57.529 29.630 0.00 0.00 39.88 1.82
182 183 9.019656 TGTTAGCTTGTTGGTAAAATATGACAT 57.980 29.630 0.00 0.00 39.88 3.06
183 184 9.289303 GTTAGCTTGTTGGTAAAATATGACATG 57.711 33.333 0.00 0.00 39.88 3.21
186 187 7.176515 AGCTTGTTGGTAAAATATGACATGTCA 59.823 33.333 29.67 29.67 44.59 3.58
189 190 8.572855 TGTTGGTAAAATATGACATGTCATCA 57.427 30.769 37.89 26.14 46.57 3.07
192 193 7.995289 TGGTAAAATATGACATGTCATCAACC 58.005 34.615 37.89 32.41 46.57 3.77
193 194 7.613411 TGGTAAAATATGACATGTCATCAACCA 59.387 33.333 37.89 33.95 46.57 3.67
194 195 8.465999 GGTAAAATATGACATGTCATCAACCAA 58.534 33.333 37.89 23.27 46.57 3.67
195 196 9.289303 GTAAAATATGACATGTCATCAACCAAC 57.711 33.333 37.89 25.85 46.57 3.77
198 199 2.884012 TGACATGTCATCAACCAACACC 59.116 45.455 24.56 0.00 34.14 4.16
199 200 3.149196 GACATGTCATCAACCAACACCT 58.851 45.455 21.07 0.00 0.00 4.00
200 201 3.565307 ACATGTCATCAACCAACACCTT 58.435 40.909 0.00 0.00 0.00 3.50
201 202 4.724399 ACATGTCATCAACCAACACCTTA 58.276 39.130 0.00 0.00 0.00 2.69
203 204 5.009610 ACATGTCATCAACCAACACCTTAAC 59.990 40.000 0.00 0.00 0.00 2.01
204 205 3.562141 TGTCATCAACCAACACCTTAACG 59.438 43.478 0.00 0.00 0.00 3.18
206 207 4.751098 GTCATCAACCAACACCTTAACGTA 59.249 41.667 0.00 0.00 0.00 3.57
208 209 4.134379 TCAACCAACACCTTAACGTACA 57.866 40.909 0.00 0.00 0.00 2.90
209 210 4.511527 TCAACCAACACCTTAACGTACAA 58.488 39.130 0.00 0.00 0.00 2.41
210 211 4.332268 TCAACCAACACCTTAACGTACAAC 59.668 41.667 0.00 0.00 0.00 3.32
211 212 3.871485 ACCAACACCTTAACGTACAACA 58.129 40.909 0.00 0.00 0.00 3.33
212 213 4.260170 ACCAACACCTTAACGTACAACAA 58.740 39.130 0.00 0.00 0.00 2.83
213 214 4.094739 ACCAACACCTTAACGTACAACAAC 59.905 41.667 0.00 0.00 0.00 3.32
214 215 4.333372 CCAACACCTTAACGTACAACAACT 59.667 41.667 0.00 0.00 0.00 3.16
215 216 5.163733 CCAACACCTTAACGTACAACAACTT 60.164 40.000 0.00 0.00 0.00 2.66
216 217 5.723492 ACACCTTAACGTACAACAACTTC 57.277 39.130 0.00 0.00 0.00 3.01
217 218 5.177326 ACACCTTAACGTACAACAACTTCA 58.823 37.500 0.00 0.00 0.00 3.02
219 220 6.316890 ACACCTTAACGTACAACAACTTCAAT 59.683 34.615 0.00 0.00 0.00 2.57
220 221 7.495279 ACACCTTAACGTACAACAACTTCAATA 59.505 33.333 0.00 0.00 0.00 1.90
222 223 8.553696 ACCTTAACGTACAACAACTTCAATAAG 58.446 33.333 0.00 0.00 38.77 1.73
253 254 9.647918 ATCTAGTTTGTCTAATAGGATGTGAGA 57.352 33.333 0.00 0.00 0.00 3.27
254 255 9.647918 TCTAGTTTGTCTAATAGGATGTGAGAT 57.352 33.333 0.00 0.00 0.00 2.75
283 284 9.905713 AATAAATAAGGTGCTCTCTCATTTACA 57.094 29.630 0.00 0.00 0.00 2.41
285 286 8.814038 AAATAAGGTGCTCTCTCATTTACATT 57.186 30.769 0.00 0.00 0.00 2.71
286 287 7.798596 ATAAGGTGCTCTCTCATTTACATTG 57.201 36.000 0.00 0.00 0.00 2.82
287 288 4.521146 AGGTGCTCTCTCATTTACATTGG 58.479 43.478 0.00 0.00 0.00 3.16
288 289 4.225942 AGGTGCTCTCTCATTTACATTGGA 59.774 41.667 0.00 0.00 0.00 3.53
289 290 4.574013 GGTGCTCTCTCATTTACATTGGAG 59.426 45.833 0.00 0.00 0.00 3.86
290 291 4.034975 GTGCTCTCTCATTTACATTGGAGC 59.965 45.833 0.00 0.00 43.30 4.70
291 292 4.080695 TGCTCTCTCATTTACATTGGAGCT 60.081 41.667 11.81 0.00 43.37 4.09
292 293 4.880696 GCTCTCTCATTTACATTGGAGCTT 59.119 41.667 0.00 0.00 40.87 3.74
293 294 5.220815 GCTCTCTCATTTACATTGGAGCTTG 60.221 44.000 0.00 0.00 40.87 4.01
294 295 5.809001 TCTCTCATTTACATTGGAGCTTGT 58.191 37.500 0.00 0.00 0.00 3.16
295 296 5.645067 TCTCTCATTTACATTGGAGCTTGTG 59.355 40.000 0.00 0.00 0.00 3.33
296 297 4.156556 TCTCATTTACATTGGAGCTTGTGC 59.843 41.667 0.00 0.00 40.05 4.57
297 298 3.825585 TCATTTACATTGGAGCTTGTGCA 59.174 39.130 0.00 0.00 42.74 4.57
298 299 4.280425 TCATTTACATTGGAGCTTGTGCAA 59.720 37.500 0.00 0.00 41.30 4.08
299 300 3.921119 TTACATTGGAGCTTGTGCAAG 57.079 42.857 7.51 7.51 40.25 4.01
300 301 0.963962 ACATTGGAGCTTGTGCAAGG 59.036 50.000 13.07 0.00 43.30 3.61
301 302 0.245539 CATTGGAGCTTGTGCAAGGG 59.754 55.000 13.07 0.00 40.25 3.95
302 303 0.901580 ATTGGAGCTTGTGCAAGGGG 60.902 55.000 13.07 0.00 40.25 4.79
303 304 2.116125 GGAGCTTGTGCAAGGGGT 59.884 61.111 13.07 0.00 42.74 4.95
304 305 2.270986 GGAGCTTGTGCAAGGGGTG 61.271 63.158 13.07 0.00 42.74 4.61
305 306 1.529244 GAGCTTGTGCAAGGGGTGT 60.529 57.895 13.07 0.00 42.74 4.16
306 307 1.076044 AGCTTGTGCAAGGGGTGTT 60.076 52.632 13.07 0.00 42.74 3.32
307 308 1.067916 GCTTGTGCAAGGGGTGTTG 59.932 57.895 13.07 0.00 38.80 3.33
308 309 1.741525 CTTGTGCAAGGGGTGTTGG 59.258 57.895 4.13 0.00 34.87 3.77
309 310 1.000993 TTGTGCAAGGGGTGTTGGT 59.999 52.632 0.00 0.00 0.00 3.67
310 311 0.616111 TTGTGCAAGGGGTGTTGGTT 60.616 50.000 0.00 0.00 0.00 3.67
311 312 1.040339 TGTGCAAGGGGTGTTGGTTC 61.040 55.000 0.00 0.00 0.00 3.62
312 313 1.040339 GTGCAAGGGGTGTTGGTTCA 61.040 55.000 0.00 0.00 0.00 3.18
313 314 0.105760 TGCAAGGGGTGTTGGTTCAT 60.106 50.000 0.00 0.00 0.00 2.57
314 315 0.318120 GCAAGGGGTGTTGGTTCATG 59.682 55.000 0.00 0.00 0.00 3.07
315 316 1.703411 CAAGGGGTGTTGGTTCATGT 58.297 50.000 0.00 0.00 0.00 3.21
316 317 2.870175 CAAGGGGTGTTGGTTCATGTA 58.130 47.619 0.00 0.00 0.00 2.29
317 318 2.556622 CAAGGGGTGTTGGTTCATGTAC 59.443 50.000 0.00 0.00 0.00 2.90
318 319 1.777878 AGGGGTGTTGGTTCATGTACA 59.222 47.619 0.00 0.00 0.00 2.90
319 320 2.378547 AGGGGTGTTGGTTCATGTACAT 59.621 45.455 1.41 1.41 0.00 2.29
320 321 3.589735 AGGGGTGTTGGTTCATGTACATA 59.410 43.478 8.32 0.00 0.00 2.29
321 322 3.692593 GGGGTGTTGGTTCATGTACATAC 59.307 47.826 8.32 4.04 0.00 2.39
322 323 4.328536 GGGTGTTGGTTCATGTACATACA 58.671 43.478 8.32 5.41 40.98 2.29
323 324 4.762765 GGGTGTTGGTTCATGTACATACAA 59.237 41.667 8.32 8.86 39.99 2.41
324 325 5.335348 GGGTGTTGGTTCATGTACATACAAC 60.335 44.000 23.71 23.71 39.99 3.32
325 326 5.335348 GGTGTTGGTTCATGTACATACAACC 60.335 44.000 27.58 27.58 39.99 3.77
326 327 5.472137 GTGTTGGTTCATGTACATACAACCT 59.528 40.000 30.80 4.24 39.99 3.50
327 328 6.016610 GTGTTGGTTCATGTACATACAACCTT 60.017 38.462 30.80 3.60 39.99 3.50
328 329 6.205853 TGTTGGTTCATGTACATACAACCTTC 59.794 38.462 30.80 25.51 39.99 3.46
329 330 5.250200 TGGTTCATGTACATACAACCTTCC 58.750 41.667 30.80 16.91 39.99 3.46
330 331 5.013704 TGGTTCATGTACATACAACCTTCCT 59.986 40.000 30.80 1.91 39.99 3.36
331 332 5.585047 GGTTCATGTACATACAACCTTCCTC 59.415 44.000 27.27 11.06 39.99 3.71
332 333 6.407202 GTTCATGTACATACAACCTTCCTCT 58.593 40.000 8.32 0.00 39.99 3.69
333 334 6.222038 TCATGTACATACAACCTTCCTCTC 57.778 41.667 8.32 0.00 39.99 3.20
334 335 5.958380 TCATGTACATACAACCTTCCTCTCT 59.042 40.000 8.32 0.00 39.99 3.10
335 336 6.440647 TCATGTACATACAACCTTCCTCTCTT 59.559 38.462 8.32 0.00 39.99 2.85
336 337 6.681729 TGTACATACAACCTTCCTCTCTTT 57.318 37.500 0.00 0.00 32.40 2.52
337 338 6.698380 TGTACATACAACCTTCCTCTCTTTC 58.302 40.000 0.00 0.00 32.40 2.62
338 339 5.167303 ACATACAACCTTCCTCTCTTTCC 57.833 43.478 0.00 0.00 0.00 3.13
339 340 4.846940 ACATACAACCTTCCTCTCTTTCCT 59.153 41.667 0.00 0.00 0.00 3.36
340 341 5.046231 ACATACAACCTTCCTCTCTTTCCTC 60.046 44.000 0.00 0.00 0.00 3.71
341 342 3.318313 ACAACCTTCCTCTCTTTCCTCA 58.682 45.455 0.00 0.00 0.00 3.86
342 343 3.071747 ACAACCTTCCTCTCTTTCCTCAC 59.928 47.826 0.00 0.00 0.00 3.51
343 344 3.268034 ACCTTCCTCTCTTTCCTCACT 57.732 47.619 0.00 0.00 0.00 3.41
344 345 3.592865 ACCTTCCTCTCTTTCCTCACTT 58.407 45.455 0.00 0.00 0.00 3.16
345 346 4.753186 ACCTTCCTCTCTTTCCTCACTTA 58.247 43.478 0.00 0.00 0.00 2.24
346 347 5.346270 ACCTTCCTCTCTTTCCTCACTTAT 58.654 41.667 0.00 0.00 0.00 1.73
347 348 5.788014 ACCTTCCTCTCTTTCCTCACTTATT 59.212 40.000 0.00 0.00 0.00 1.40
348 349 6.112058 CCTTCCTCTCTTTCCTCACTTATTG 58.888 44.000 0.00 0.00 0.00 1.90
349 350 6.296145 CCTTCCTCTCTTTCCTCACTTATTGT 60.296 42.308 0.00 0.00 0.00 2.71
350 351 7.093289 CCTTCCTCTCTTTCCTCACTTATTGTA 60.093 40.741 0.00 0.00 0.00 2.41
351 352 7.979786 TCCTCTCTTTCCTCACTTATTGTAT 57.020 36.000 0.00 0.00 0.00 2.29
352 353 7.786030 TCCTCTCTTTCCTCACTTATTGTATG 58.214 38.462 0.00 0.00 0.00 2.39
353 354 7.619698 TCCTCTCTTTCCTCACTTATTGTATGA 59.380 37.037 0.00 0.00 0.00 2.15
354 355 7.708752 CCTCTCTTTCCTCACTTATTGTATGAC 59.291 40.741 0.00 0.00 0.00 3.06
355 356 8.134202 TCTCTTTCCTCACTTATTGTATGACA 57.866 34.615 0.00 0.00 0.00 3.58
356 357 8.035394 TCTCTTTCCTCACTTATTGTATGACAC 58.965 37.037 0.00 0.00 0.00 3.67
357 358 7.676004 TCTTTCCTCACTTATTGTATGACACA 58.324 34.615 0.00 0.00 34.51 3.72
358 359 8.321353 TCTTTCCTCACTTATTGTATGACACAT 58.679 33.333 0.00 0.00 36.90 3.21
359 360 8.492673 TTTCCTCACTTATTGTATGACACATC 57.507 34.615 0.00 0.00 36.90 3.06
360 361 7.181569 TCCTCACTTATTGTATGACACATCA 57.818 36.000 0.00 0.00 36.90 3.07
362 363 8.923270 TCCTCACTTATTGTATGACACATCATA 58.077 33.333 0.00 0.00 44.11 2.15
363 364 9.546428 CCTCACTTATTGTATGACACATCATAA 57.454 33.333 0.00 0.00 46.95 1.90
390 391 8.498054 AAATCATATGTGTCAAAGTCTACTGG 57.502 34.615 1.90 0.00 0.00 4.00
391 392 5.419542 TCATATGTGTCAAAGTCTACTGGC 58.580 41.667 1.90 0.00 0.00 4.85
392 393 3.769739 ATGTGTCAAAGTCTACTGGCA 57.230 42.857 0.00 0.00 0.00 4.92
393 394 3.552132 TGTGTCAAAGTCTACTGGCAA 57.448 42.857 0.00 0.00 0.00 4.52
394 395 3.202906 TGTGTCAAAGTCTACTGGCAAC 58.797 45.455 0.00 0.00 0.00 4.17
395 396 3.118408 TGTGTCAAAGTCTACTGGCAACT 60.118 43.478 0.00 0.00 37.61 3.16
396 397 4.100344 TGTGTCAAAGTCTACTGGCAACTA 59.900 41.667 0.00 0.00 37.61 2.24
397 398 5.054477 GTGTCAAAGTCTACTGGCAACTAA 58.946 41.667 0.00 0.00 37.61 2.24
398 399 5.050295 GTGTCAAAGTCTACTGGCAACTAAC 60.050 44.000 0.00 0.00 37.61 2.34
399 400 5.163343 TGTCAAAGTCTACTGGCAACTAACT 60.163 40.000 0.00 0.00 37.61 2.24
400 401 5.758784 GTCAAAGTCTACTGGCAACTAACTT 59.241 40.000 0.00 0.00 37.61 2.66
401 402 6.927381 GTCAAAGTCTACTGGCAACTAACTTA 59.073 38.462 5.70 0.00 37.61 2.24
402 403 6.927381 TCAAAGTCTACTGGCAACTAACTTAC 59.073 38.462 5.70 0.00 37.61 2.34
403 404 6.415206 AAGTCTACTGGCAACTAACTTACA 57.585 37.500 3.92 0.00 37.61 2.41
404 405 6.415206 AGTCTACTGGCAACTAACTTACAA 57.585 37.500 0.00 0.00 37.61 2.41
405 406 6.221659 AGTCTACTGGCAACTAACTTACAAC 58.778 40.000 0.00 0.00 37.61 3.32
406 407 5.407691 GTCTACTGGCAACTAACTTACAACC 59.592 44.000 0.00 0.00 37.61 3.77
407 408 4.159244 ACTGGCAACTAACTTACAACCA 57.841 40.909 0.00 0.00 37.61 3.67
408 409 4.725490 ACTGGCAACTAACTTACAACCAT 58.275 39.130 0.00 0.00 37.61 3.55
409 410 5.137551 ACTGGCAACTAACTTACAACCATT 58.862 37.500 0.00 0.00 37.61 3.16
410 411 5.009610 ACTGGCAACTAACTTACAACCATTG 59.990 40.000 0.00 0.00 37.61 2.82
411 412 4.279671 TGGCAACTAACTTACAACCATTGG 59.720 41.667 0.00 0.00 33.45 3.16
412 413 4.521256 GGCAACTAACTTACAACCATTGGA 59.479 41.667 10.37 0.00 34.12 3.53
413 414 5.335661 GGCAACTAACTTACAACCATTGGAG 60.336 44.000 10.37 4.02 34.12 3.86
414 415 5.472137 GCAACTAACTTACAACCATTGGAGA 59.528 40.000 10.37 0.00 34.12 3.71
415 416 6.151144 GCAACTAACTTACAACCATTGGAGAT 59.849 38.462 10.37 0.00 34.12 2.75
416 417 7.530010 CAACTAACTTACAACCATTGGAGATG 58.470 38.462 10.37 7.91 34.12 2.90
417 418 5.648092 ACTAACTTACAACCATTGGAGATGC 59.352 40.000 10.37 0.00 34.12 3.91
418 419 3.356290 ACTTACAACCATTGGAGATGCC 58.644 45.455 10.37 0.00 34.12 4.40
425 426 1.949525 CCATTGGAGATGCCCTAAACG 59.050 52.381 0.00 0.00 34.97 3.60
426 427 1.949525 CATTGGAGATGCCCTAAACGG 59.050 52.381 0.00 0.00 34.97 4.44
462 463 4.859798 TGTTTTGCTTAACTGTTTTGTCCG 59.140 37.500 0.00 0.00 0.00 4.79
477 478 1.341852 TGTCCGATGAAGTTCCGTTGA 59.658 47.619 0.00 0.00 0.00 3.18
527 528 8.384693 AGCTGGTTCCATATTATGATCATAGA 57.615 34.615 14.86 8.40 0.00 1.98
776 833 1.227497 CAATCCGCTCAGAGCCTCC 60.227 63.158 17.16 0.00 38.18 4.30
917 1347 2.764637 AATCGGCCCACCCTGTTGTC 62.765 60.000 0.00 0.00 0.00 3.18
958 1388 8.148999 CCACTGAGCTGACATGCATATATATAT 58.851 37.037 0.00 0.00 34.99 0.86
1158 1602 2.999331 TGGTTGGCTTACTTGCTATCC 58.001 47.619 0.00 0.00 34.96 2.59
1203 1647 3.018856 TGGCCAGCTTTCATTACATGAG 58.981 45.455 0.00 0.00 40.94 2.90
1287 1732 1.909700 TTCATCTTGGTGGGCAAGAC 58.090 50.000 0.00 0.00 40.89 3.01
1552 2009 4.034510 GTCAATTTCCTGATCTACAAGGCG 59.965 45.833 0.00 0.00 0.00 5.52
1674 2382 7.916914 AGGTAACATACAGACAACATTTACC 57.083 36.000 0.00 0.00 38.23 2.85
1927 2845 3.192466 GCATTGTTCATTGGAGCATTCC 58.808 45.455 0.00 0.00 44.31 3.01
1998 2919 0.749049 GGGCATTCTTGGAATCCTGC 59.251 55.000 0.00 0.96 0.00 4.85
2532 3464 5.339008 ACATAAGCGACATACTGAAGGAA 57.661 39.130 0.00 0.00 0.00 3.36
2546 3478 2.844072 AAGGAAGCTTCGGAGAGCGC 62.844 60.000 19.91 0.00 38.43 5.92
2573 3505 1.520787 CCGGTGCTATCGGTTCCAC 60.521 63.158 0.00 0.00 42.33 4.02
2574 3506 1.216977 CGGTGCTATCGGTTCCACA 59.783 57.895 1.62 0.00 0.00 4.17
2575 3507 0.806102 CGGTGCTATCGGTTCCACAG 60.806 60.000 1.62 0.00 0.00 3.66
2576 3508 0.535335 GGTGCTATCGGTTCCACAGA 59.465 55.000 1.62 0.00 0.00 3.41
2577 3509 1.641577 GTGCTATCGGTTCCACAGAC 58.358 55.000 0.00 0.00 0.00 3.51
2578 3510 0.535335 TGCTATCGGTTCCACAGACC 59.465 55.000 0.00 0.00 0.00 3.85
2579 3511 0.535335 GCTATCGGTTCCACAGACCA 59.465 55.000 0.00 0.00 36.99 4.02
2677 3609 3.769536 CTTTGTTTTTCAAGGTGAGCGT 58.230 40.909 0.00 0.00 37.35 5.07
2733 3665 2.103094 CGTGGGCAATGATTCTCCTCTA 59.897 50.000 0.00 0.00 0.00 2.43
2865 3813 3.010420 GCTTGTTAGACCAAGTGGGATC 58.990 50.000 1.69 0.00 43.03 3.36
2938 3886 3.501062 CCGGTGAAGAAAAACCCTAACTC 59.499 47.826 0.00 0.00 32.44 3.01
2955 3903 2.582052 ACTCATGTTGCCTTCCGAAAA 58.418 42.857 0.00 0.00 0.00 2.29
2956 3904 3.157087 ACTCATGTTGCCTTCCGAAAAT 58.843 40.909 0.00 0.00 0.00 1.82
2979 3957 4.397103 TGCAGTTTGATCCTAGCATTTCTG 59.603 41.667 0.00 0.00 0.00 3.02
2980 3958 9.707269 AATGCAGTTTGATCCTAGCATTTCTGC 62.707 40.741 12.30 0.00 46.83 4.26
3040 4018 7.068702 TCCGTTCCTATTACTAATACAAGGGA 58.931 38.462 10.21 10.21 30.28 4.20
3041 4019 7.731688 TCCGTTCCTATTACTAATACAAGGGAT 59.268 37.037 10.21 0.00 29.06 3.85
3042 4020 9.028284 CCGTTCCTATTACTAATACAAGGGATA 57.972 37.037 7.81 0.00 0.00 2.59
3070 4048 4.742438 TTTGTTGCGTGATTAGAAGGAC 57.258 40.909 0.00 0.00 0.00 3.85
3165 4145 4.111255 TGGGATGTCCAGAATTGAACAA 57.889 40.909 0.86 0.00 41.46 2.83
3166 4146 4.081406 TGGGATGTCCAGAATTGAACAAG 58.919 43.478 0.86 0.00 41.46 3.16
3167 4147 3.119352 GGGATGTCCAGAATTGAACAAGC 60.119 47.826 0.86 0.00 37.91 4.01
3168 4148 3.760684 GGATGTCCAGAATTGAACAAGCT 59.239 43.478 0.00 0.00 35.64 3.74
3170 4150 2.294233 TGTCCAGAATTGAACAAGCTGC 59.706 45.455 11.83 0.00 0.00 5.25
3171 4151 2.555757 GTCCAGAATTGAACAAGCTGCT 59.444 45.455 0.00 0.00 0.00 4.24
3172 4152 2.555325 TCCAGAATTGAACAAGCTGCTG 59.445 45.455 1.35 0.00 0.00 4.41
3188 4168 5.695851 GCTGCTGCTATATATTGGTTGTT 57.304 39.130 8.53 0.00 36.03 2.83
3189 4169 6.801539 GCTGCTGCTATATATTGGTTGTTA 57.198 37.500 8.53 0.00 36.03 2.41
3190 4170 7.383102 GCTGCTGCTATATATTGGTTGTTAT 57.617 36.000 8.53 0.00 36.03 1.89
3191 4171 8.492673 GCTGCTGCTATATATTGGTTGTTATA 57.507 34.615 8.53 0.00 36.03 0.98
3192 4172 8.391106 GCTGCTGCTATATATTGGTTGTTATAC 58.609 37.037 8.53 0.00 36.03 1.47
3193 4173 8.474006 TGCTGCTATATATTGGTTGTTATACG 57.526 34.615 0.00 0.00 0.00 3.06
3194 4174 8.308207 TGCTGCTATATATTGGTTGTTATACGA 58.692 33.333 0.00 0.00 0.00 3.43
3195 4175 8.808529 GCTGCTATATATTGGTTGTTATACGAG 58.191 37.037 0.00 0.00 0.00 4.18
3196 4176 9.856488 CTGCTATATATTGGTTGTTATACGAGT 57.144 33.333 0.00 0.00 0.00 4.18
3197 4177 9.850628 TGCTATATATTGGTTGTTATACGAGTC 57.149 33.333 0.00 0.00 0.00 3.36
3198 4178 9.850628 GCTATATATTGGTTGTTATACGAGTCA 57.149 33.333 0.00 0.00 0.00 3.41
3203 4183 6.774354 TTGGTTGTTATACGAGTCAAAGTC 57.226 37.500 0.00 0.00 0.00 3.01
3204 4184 5.232463 TGGTTGTTATACGAGTCAAAGTCC 58.768 41.667 0.00 0.00 0.00 3.85
3205 4185 5.221481 TGGTTGTTATACGAGTCAAAGTCCA 60.221 40.000 0.00 0.00 0.00 4.02
3206 4186 5.697633 GGTTGTTATACGAGTCAAAGTCCAA 59.302 40.000 0.00 0.00 0.00 3.53
3207 4187 6.347160 GGTTGTTATACGAGTCAAAGTCCAAC 60.347 42.308 0.00 0.00 0.00 3.77
3208 4188 5.845103 TGTTATACGAGTCAAAGTCCAACA 58.155 37.500 0.00 0.00 0.00 3.33
3209 4189 5.924254 TGTTATACGAGTCAAAGTCCAACAG 59.076 40.000 0.00 0.00 0.00 3.16
3210 4190 1.583054 ACGAGTCAAAGTCCAACAGC 58.417 50.000 0.00 0.00 0.00 4.40
3211 4191 1.139058 ACGAGTCAAAGTCCAACAGCT 59.861 47.619 0.00 0.00 0.00 4.24
3212 4192 1.528586 CGAGTCAAAGTCCAACAGCTG 59.471 52.381 13.48 13.48 0.00 4.24
3213 4193 1.265365 GAGTCAAAGTCCAACAGCTGC 59.735 52.381 15.27 0.00 0.00 5.25
3214 4194 1.133976 AGTCAAAGTCCAACAGCTGCT 60.134 47.619 15.27 0.00 0.00 4.24
3215 4195 1.002033 GTCAAAGTCCAACAGCTGCTG 60.002 52.381 27.02 27.02 37.52 4.41
3216 4196 0.318445 CAAAGTCCAACAGCTGCTGC 60.318 55.000 28.39 12.42 34.37 5.25
3304 4284 4.587684 TCCAACTCTCGTTAAGTTCCTCTT 59.412 41.667 0.00 0.00 34.79 2.85
3317 4297 3.005155 AGTTCCTCTTTCACTTGCAATGC 59.995 43.478 0.00 0.00 0.00 3.56
3318 4298 2.585330 TCCTCTTTCACTTGCAATGCA 58.415 42.857 2.72 2.72 36.47 3.96
3320 4300 9.517168 AAGTTCCTCTTTCACTTGCAATGCAAT 62.517 37.037 21.68 8.91 39.45 3.56
3443 4494 0.537188 ATGGAGTGCTACCGTGGAAG 59.463 55.000 0.00 0.00 0.00 3.46
3597 4987 7.231317 ACATTTTGAAATCAACCTGAGCTCTTA 59.769 33.333 16.19 0.00 35.28 2.10
3606 4996 6.769512 TCAACCTGAGCTCTTATGTTTTAGT 58.230 36.000 16.19 0.00 0.00 2.24
3617 5007 7.481798 GCTCTTATGTTTTAGTGAATTCAACCG 59.518 37.037 10.35 0.00 0.00 4.44
3619 5009 4.231718 TGTTTTAGTGAATTCAACCGGC 57.768 40.909 10.35 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 9.897744 ACCAATATCGCATTAAATATCAAACAG 57.102 29.630 0.00 0.00 0.00 3.16
24 25 4.340666 TGGTGCACCAATATCGCATTAAAT 59.659 37.500 36.10 0.00 44.35 1.40
65 66 3.160269 CCAAAGAGCACCCAAGATTTCT 58.840 45.455 0.00 0.00 0.00 2.52
69 70 0.613012 GCCCAAAGAGCACCCAAGAT 60.613 55.000 0.00 0.00 0.00 2.40
74 75 1.555967 TAAATGCCCAAAGAGCACCC 58.444 50.000 0.00 0.00 44.40 4.61
109 110 9.653287 CTTACAAGTACAAGAAGGATCACAATA 57.347 33.333 0.00 0.00 0.00 1.90
110 111 8.375506 TCTTACAAGTACAAGAAGGATCACAAT 58.624 33.333 0.00 0.00 0.00 2.71
111 112 7.732025 TCTTACAAGTACAAGAAGGATCACAA 58.268 34.615 0.00 0.00 0.00 3.33
113 114 6.311690 GCTCTTACAAGTACAAGAAGGATCAC 59.688 42.308 0.00 0.00 30.68 3.06
114 115 6.014584 TGCTCTTACAAGTACAAGAAGGATCA 60.015 38.462 0.00 0.00 30.68 2.92
116 117 6.360370 TGCTCTTACAAGTACAAGAAGGAT 57.640 37.500 0.00 0.00 30.68 3.24
117 118 5.801531 TGCTCTTACAAGTACAAGAAGGA 57.198 39.130 0.00 0.00 30.68 3.36
119 120 7.600375 TGAAGATGCTCTTACAAGTACAAGAAG 59.400 37.037 0.00 0.00 36.73 2.85
120 121 7.441836 TGAAGATGCTCTTACAAGTACAAGAA 58.558 34.615 0.00 0.00 36.73 2.52
121 122 6.993079 TGAAGATGCTCTTACAAGTACAAGA 58.007 36.000 0.00 0.00 36.73 3.02
122 123 7.658179 TTGAAGATGCTCTTACAAGTACAAG 57.342 36.000 0.00 0.00 36.73 3.16
123 124 9.371136 CTATTGAAGATGCTCTTACAAGTACAA 57.629 33.333 0.00 0.00 36.73 2.41
125 126 8.934507 ACTATTGAAGATGCTCTTACAAGTAC 57.065 34.615 0.00 0.00 36.73 2.73
127 128 8.725148 CAAACTATTGAAGATGCTCTTACAAGT 58.275 33.333 0.00 0.00 36.73 3.16
128 129 8.725148 ACAAACTATTGAAGATGCTCTTACAAG 58.275 33.333 0.00 0.00 36.73 3.16
129 130 8.621532 ACAAACTATTGAAGATGCTCTTACAA 57.378 30.769 0.00 0.00 36.73 2.41
132 133 9.890629 ACATACAAACTATTGAAGATGCTCTTA 57.109 29.630 0.00 0.00 36.73 2.10
137 138 8.616076 AGCTAACATACAAACTATTGAAGATGC 58.384 33.333 0.00 0.00 38.94 3.91
140 141 9.502091 ACAAGCTAACATACAAACTATTGAAGA 57.498 29.630 0.00 0.00 38.94 2.87
142 143 9.891828 CAACAAGCTAACATACAAACTATTGAA 57.108 29.630 0.00 0.00 38.94 2.69
144 145 8.296713 ACCAACAAGCTAACATACAAACTATTG 58.703 33.333 0.00 0.00 42.46 1.90
147 148 8.905660 TTACCAACAAGCTAACATACAAACTA 57.094 30.769 0.00 0.00 0.00 2.24
149 150 8.859517 TTTTACCAACAAGCTAACATACAAAC 57.140 30.769 0.00 0.00 0.00 2.93
155 156 9.019656 TGTCATATTTTACCAACAAGCTAACAT 57.980 29.630 0.00 0.00 0.00 2.71
156 157 8.397575 TGTCATATTTTACCAACAAGCTAACA 57.602 30.769 0.00 0.00 0.00 2.41
157 158 9.289303 CATGTCATATTTTACCAACAAGCTAAC 57.711 33.333 0.00 0.00 0.00 2.34
158 159 9.019656 ACATGTCATATTTTACCAACAAGCTAA 57.980 29.630 0.00 0.00 0.00 3.09
177 178 2.884012 GGTGTTGGTTGATGACATGTCA 59.116 45.455 29.67 29.67 44.59 3.58
180 181 5.460646 GTTAAGGTGTTGGTTGATGACATG 58.539 41.667 0.00 0.00 0.00 3.21
182 183 3.562141 CGTTAAGGTGTTGGTTGATGACA 59.438 43.478 0.00 0.00 0.00 3.58
183 184 3.562557 ACGTTAAGGTGTTGGTTGATGAC 59.437 43.478 0.00 0.00 0.00 3.06
186 187 4.706035 TGTACGTTAAGGTGTTGGTTGAT 58.294 39.130 10.99 0.00 0.00 2.57
187 188 4.134379 TGTACGTTAAGGTGTTGGTTGA 57.866 40.909 10.99 0.00 0.00 3.18
189 190 4.260170 TGTTGTACGTTAAGGTGTTGGTT 58.740 39.130 10.99 0.00 0.00 3.67
192 193 5.473796 AGTTGTTGTACGTTAAGGTGTTG 57.526 39.130 10.99 0.00 0.00 3.33
193 194 5.642919 TGAAGTTGTTGTACGTTAAGGTGTT 59.357 36.000 10.99 0.00 0.00 3.32
194 195 5.177326 TGAAGTTGTTGTACGTTAAGGTGT 58.823 37.500 10.99 0.00 0.00 4.16
195 196 5.721876 TGAAGTTGTTGTACGTTAAGGTG 57.278 39.130 10.99 0.00 0.00 4.00
228 229 9.647918 ATCTCACATCCTATTAGACAAACTAGA 57.352 33.333 0.00 0.00 32.30 2.43
257 258 9.905713 TGTAAATGAGAGAGCACCTTATTTATT 57.094 29.630 10.67 0.00 35.77 1.40
259 260 9.905713 AATGTAAATGAGAGAGCACCTTATTTA 57.094 29.630 0.00 0.00 33.66 1.40
260 261 8.680903 CAATGTAAATGAGAGAGCACCTTATTT 58.319 33.333 0.00 0.00 35.16 1.40
261 262 7.284034 CCAATGTAAATGAGAGAGCACCTTATT 59.716 37.037 0.00 0.00 0.00 1.40
262 263 6.769822 CCAATGTAAATGAGAGAGCACCTTAT 59.230 38.462 0.00 0.00 0.00 1.73
263 264 6.070251 TCCAATGTAAATGAGAGAGCACCTTA 60.070 38.462 0.00 0.00 0.00 2.69
264 265 4.946157 CCAATGTAAATGAGAGAGCACCTT 59.054 41.667 0.00 0.00 0.00 3.50
265 266 4.225942 TCCAATGTAAATGAGAGAGCACCT 59.774 41.667 0.00 0.00 0.00 4.00
266 267 4.517285 TCCAATGTAAATGAGAGAGCACC 58.483 43.478 0.00 0.00 0.00 5.01
267 268 4.034975 GCTCCAATGTAAATGAGAGAGCAC 59.965 45.833 0.00 0.00 43.79 4.40
268 269 4.080695 AGCTCCAATGTAAATGAGAGAGCA 60.081 41.667 10.88 0.00 46.11 4.26
269 270 4.450053 AGCTCCAATGTAAATGAGAGAGC 58.550 43.478 0.00 0.00 44.49 4.09
270 271 5.879223 ACAAGCTCCAATGTAAATGAGAGAG 59.121 40.000 0.00 0.00 0.00 3.20
271 272 5.645067 CACAAGCTCCAATGTAAATGAGAGA 59.355 40.000 0.00 0.00 0.00 3.10
272 273 5.675575 GCACAAGCTCCAATGTAAATGAGAG 60.676 44.000 0.00 0.00 37.91 3.20
273 274 4.156556 GCACAAGCTCCAATGTAAATGAGA 59.843 41.667 0.00 0.00 37.91 3.27
274 275 4.082625 TGCACAAGCTCCAATGTAAATGAG 60.083 41.667 0.00 0.00 42.74 2.90
275 276 3.825585 TGCACAAGCTCCAATGTAAATGA 59.174 39.130 0.00 0.00 42.74 2.57
276 277 4.177165 TGCACAAGCTCCAATGTAAATG 57.823 40.909 0.00 0.00 42.74 2.32
277 278 4.322198 CCTTGCACAAGCTCCAATGTAAAT 60.322 41.667 4.82 0.00 42.74 1.40
278 279 3.005684 CCTTGCACAAGCTCCAATGTAAA 59.994 43.478 4.82 0.00 42.74 2.01
279 280 2.557924 CCTTGCACAAGCTCCAATGTAA 59.442 45.455 4.82 0.00 42.74 2.41
280 281 2.161855 CCTTGCACAAGCTCCAATGTA 58.838 47.619 4.82 0.00 42.74 2.29
281 282 0.963962 CCTTGCACAAGCTCCAATGT 59.036 50.000 4.82 0.00 42.74 2.71
282 283 0.245539 CCCTTGCACAAGCTCCAATG 59.754 55.000 4.82 0.00 42.74 2.82
283 284 0.901580 CCCCTTGCACAAGCTCCAAT 60.902 55.000 4.82 0.00 42.74 3.16
284 285 1.531365 CCCCTTGCACAAGCTCCAA 60.531 57.895 4.82 0.00 42.74 3.53
285 286 2.115910 CCCCTTGCACAAGCTCCA 59.884 61.111 4.82 0.00 42.74 3.86
286 287 2.116125 ACCCCTTGCACAAGCTCC 59.884 61.111 4.82 0.00 42.74 4.70
287 288 1.109323 AACACCCCTTGCACAAGCTC 61.109 55.000 4.82 0.00 42.74 4.09
288 289 1.076044 AACACCCCTTGCACAAGCT 60.076 52.632 4.82 0.00 42.74 3.74
289 290 1.067916 CAACACCCCTTGCACAAGC 59.932 57.895 4.82 0.00 42.57 4.01
290 291 1.042559 ACCAACACCCCTTGCACAAG 61.043 55.000 3.32 3.32 38.14 3.16
291 292 0.616111 AACCAACACCCCTTGCACAA 60.616 50.000 0.00 0.00 0.00 3.33
292 293 1.000993 AACCAACACCCCTTGCACA 59.999 52.632 0.00 0.00 0.00 4.57
293 294 1.040339 TGAACCAACACCCCTTGCAC 61.040 55.000 0.00 0.00 0.00 4.57
294 295 0.105760 ATGAACCAACACCCCTTGCA 60.106 50.000 0.00 0.00 0.00 4.08
295 296 0.318120 CATGAACCAACACCCCTTGC 59.682 55.000 0.00 0.00 0.00 4.01
296 297 1.703411 ACATGAACCAACACCCCTTG 58.297 50.000 0.00 0.00 0.00 3.61
297 298 2.175931 TGTACATGAACCAACACCCCTT 59.824 45.455 0.00 0.00 0.00 3.95
298 299 1.777878 TGTACATGAACCAACACCCCT 59.222 47.619 0.00 0.00 0.00 4.79
299 300 2.279935 TGTACATGAACCAACACCCC 57.720 50.000 0.00 0.00 0.00 4.95
300 301 4.328536 TGTATGTACATGAACCAACACCC 58.671 43.478 18.81 0.00 0.00 4.61
301 302 5.335348 GGTTGTATGTACATGAACCAACACC 60.335 44.000 29.43 19.21 35.95 4.16
302 303 5.472137 AGGTTGTATGTACATGAACCAACAC 59.528 40.000 32.53 22.89 37.22 3.32
303 304 5.626142 AGGTTGTATGTACATGAACCAACA 58.374 37.500 32.53 21.23 37.22 3.33
304 305 6.349033 GGAAGGTTGTATGTACATGAACCAAC 60.349 42.308 32.53 27.14 37.22 3.77
305 306 5.708230 GGAAGGTTGTATGTACATGAACCAA 59.292 40.000 32.53 21.44 37.22 3.67
306 307 5.013704 AGGAAGGTTGTATGTACATGAACCA 59.986 40.000 32.53 18.28 37.22 3.67
307 308 5.497474 AGGAAGGTTGTATGTACATGAACC 58.503 41.667 28.27 28.27 35.89 3.62
308 309 6.407202 AGAGGAAGGTTGTATGTACATGAAC 58.593 40.000 18.81 18.28 35.89 3.18
309 310 6.440647 AGAGAGGAAGGTTGTATGTACATGAA 59.559 38.462 18.81 8.19 35.89 2.57
310 311 5.958380 AGAGAGGAAGGTTGTATGTACATGA 59.042 40.000 18.81 1.91 35.89 3.07
311 312 6.227298 AGAGAGGAAGGTTGTATGTACATG 57.773 41.667 18.81 0.00 35.89 3.21
312 313 6.875972 AAGAGAGGAAGGTTGTATGTACAT 57.124 37.500 13.93 13.93 35.89 2.29
313 314 6.295688 GGAAAGAGAGGAAGGTTGTATGTACA 60.296 42.308 0.00 0.00 0.00 2.90
314 315 6.070710 AGGAAAGAGAGGAAGGTTGTATGTAC 60.071 42.308 0.00 0.00 0.00 2.90
315 316 6.023603 AGGAAAGAGAGGAAGGTTGTATGTA 58.976 40.000 0.00 0.00 0.00 2.29
316 317 4.846940 AGGAAAGAGAGGAAGGTTGTATGT 59.153 41.667 0.00 0.00 0.00 2.29
317 318 5.046304 TGAGGAAAGAGAGGAAGGTTGTATG 60.046 44.000 0.00 0.00 0.00 2.39
318 319 5.046231 GTGAGGAAAGAGAGGAAGGTTGTAT 60.046 44.000 0.00 0.00 0.00 2.29
319 320 4.283722 GTGAGGAAAGAGAGGAAGGTTGTA 59.716 45.833 0.00 0.00 0.00 2.41
320 321 3.071747 GTGAGGAAAGAGAGGAAGGTTGT 59.928 47.826 0.00 0.00 0.00 3.32
321 322 3.326297 AGTGAGGAAAGAGAGGAAGGTTG 59.674 47.826 0.00 0.00 0.00 3.77
322 323 3.592865 AGTGAGGAAAGAGAGGAAGGTT 58.407 45.455 0.00 0.00 0.00 3.50
323 324 3.268034 AGTGAGGAAAGAGAGGAAGGT 57.732 47.619 0.00 0.00 0.00 3.50
324 325 5.948742 ATAAGTGAGGAAAGAGAGGAAGG 57.051 43.478 0.00 0.00 0.00 3.46
325 326 6.706295 ACAATAAGTGAGGAAAGAGAGGAAG 58.294 40.000 0.00 0.00 0.00 3.46
326 327 6.688073 ACAATAAGTGAGGAAAGAGAGGAA 57.312 37.500 0.00 0.00 0.00 3.36
327 328 7.619698 TCATACAATAAGTGAGGAAAGAGAGGA 59.380 37.037 0.00 0.00 0.00 3.71
328 329 7.708752 GTCATACAATAAGTGAGGAAAGAGAGG 59.291 40.741 0.00 0.00 0.00 3.69
329 330 8.253810 TGTCATACAATAAGTGAGGAAAGAGAG 58.746 37.037 0.00 0.00 0.00 3.20
330 331 8.035394 GTGTCATACAATAAGTGAGGAAAGAGA 58.965 37.037 0.00 0.00 0.00 3.10
331 332 7.819415 TGTGTCATACAATAAGTGAGGAAAGAG 59.181 37.037 0.00 0.00 36.06 2.85
332 333 7.676004 TGTGTCATACAATAAGTGAGGAAAGA 58.324 34.615 0.00 0.00 36.06 2.52
333 334 7.905604 TGTGTCATACAATAAGTGAGGAAAG 57.094 36.000 0.00 0.00 36.06 2.62
334 335 8.100164 TGATGTGTCATACAATAAGTGAGGAAA 58.900 33.333 0.00 0.00 43.77 3.13
335 336 7.619965 TGATGTGTCATACAATAAGTGAGGAA 58.380 34.615 0.00 0.00 43.77 3.36
336 337 7.181569 TGATGTGTCATACAATAAGTGAGGA 57.818 36.000 0.00 0.00 43.77 3.71
337 338 9.546428 TTATGATGTGTCATACAATAAGTGAGG 57.454 33.333 0.00 0.00 44.77 3.86
364 365 8.950210 CCAGTAGACTTTGACACATATGATTTT 58.050 33.333 10.38 0.00 0.00 1.82
365 366 7.066284 GCCAGTAGACTTTGACACATATGATTT 59.934 37.037 10.38 0.00 0.00 2.17
366 367 6.540189 GCCAGTAGACTTTGACACATATGATT 59.460 38.462 10.38 0.00 0.00 2.57
367 368 6.051717 GCCAGTAGACTTTGACACATATGAT 58.948 40.000 10.38 0.00 0.00 2.45
368 369 5.046663 TGCCAGTAGACTTTGACACATATGA 60.047 40.000 10.38 0.00 0.00 2.15
369 370 5.178061 TGCCAGTAGACTTTGACACATATG 58.822 41.667 0.00 0.00 0.00 1.78
370 371 5.420725 TGCCAGTAGACTTTGACACATAT 57.579 39.130 0.00 0.00 0.00 1.78
371 372 4.882842 TGCCAGTAGACTTTGACACATA 57.117 40.909 0.00 0.00 0.00 2.29
372 373 3.769739 TGCCAGTAGACTTTGACACAT 57.230 42.857 0.00 0.00 0.00 3.21
373 374 3.118408 AGTTGCCAGTAGACTTTGACACA 60.118 43.478 0.00 0.00 0.00 3.72
374 375 3.467803 AGTTGCCAGTAGACTTTGACAC 58.532 45.455 0.00 0.00 0.00 3.67
375 376 3.838244 AGTTGCCAGTAGACTTTGACA 57.162 42.857 0.00 0.00 0.00 3.58
376 377 5.298347 AGTTAGTTGCCAGTAGACTTTGAC 58.702 41.667 0.00 0.00 0.00 3.18
377 378 5.546621 AGTTAGTTGCCAGTAGACTTTGA 57.453 39.130 0.00 0.00 0.00 2.69
378 379 6.704493 TGTAAGTTAGTTGCCAGTAGACTTTG 59.296 38.462 0.00 0.00 0.00 2.77
379 380 6.823497 TGTAAGTTAGTTGCCAGTAGACTTT 58.177 36.000 0.00 0.00 0.00 2.66
380 381 6.415206 TGTAAGTTAGTTGCCAGTAGACTT 57.585 37.500 0.00 0.00 0.00 3.01
381 382 6.221659 GTTGTAAGTTAGTTGCCAGTAGACT 58.778 40.000 0.00 0.00 0.00 3.24
382 383 5.407691 GGTTGTAAGTTAGTTGCCAGTAGAC 59.592 44.000 0.00 0.00 0.00 2.59
383 384 5.070714 TGGTTGTAAGTTAGTTGCCAGTAGA 59.929 40.000 0.00 0.00 0.00 2.59
384 385 5.302360 TGGTTGTAAGTTAGTTGCCAGTAG 58.698 41.667 0.00 0.00 0.00 2.57
385 386 5.293319 TGGTTGTAAGTTAGTTGCCAGTA 57.707 39.130 0.00 0.00 0.00 2.74
386 387 4.159244 TGGTTGTAAGTTAGTTGCCAGT 57.841 40.909 0.00 0.00 0.00 4.00
387 388 5.460646 CAATGGTTGTAAGTTAGTTGCCAG 58.539 41.667 0.00 0.00 0.00 4.85
388 389 4.279671 CCAATGGTTGTAAGTTAGTTGCCA 59.720 41.667 0.00 0.00 0.00 4.92
389 390 4.521256 TCCAATGGTTGTAAGTTAGTTGCC 59.479 41.667 0.00 0.00 0.00 4.52
390 391 5.472137 TCTCCAATGGTTGTAAGTTAGTTGC 59.528 40.000 0.00 0.00 0.00 4.17
391 392 7.530010 CATCTCCAATGGTTGTAAGTTAGTTG 58.470 38.462 0.00 0.00 0.00 3.16
392 393 6.151144 GCATCTCCAATGGTTGTAAGTTAGTT 59.849 38.462 0.00 0.00 0.00 2.24
393 394 5.648092 GCATCTCCAATGGTTGTAAGTTAGT 59.352 40.000 0.00 0.00 0.00 2.24
394 395 5.066505 GGCATCTCCAATGGTTGTAAGTTAG 59.933 44.000 0.00 0.00 34.01 2.34
395 396 4.947388 GGCATCTCCAATGGTTGTAAGTTA 59.053 41.667 0.00 0.00 34.01 2.24
396 397 3.763897 GGCATCTCCAATGGTTGTAAGTT 59.236 43.478 0.00 0.00 34.01 2.66
397 398 3.356290 GGCATCTCCAATGGTTGTAAGT 58.644 45.455 0.00 0.00 34.01 2.24
398 399 2.689983 GGGCATCTCCAATGGTTGTAAG 59.310 50.000 0.00 0.00 36.21 2.34
399 400 2.311542 AGGGCATCTCCAATGGTTGTAA 59.688 45.455 0.00 0.00 36.21 2.41
400 401 1.922447 AGGGCATCTCCAATGGTTGTA 59.078 47.619 0.00 0.00 36.21 2.41
401 402 0.706433 AGGGCATCTCCAATGGTTGT 59.294 50.000 0.00 0.00 36.21 3.32
402 403 2.734755 TAGGGCATCTCCAATGGTTG 57.265 50.000 0.00 0.00 36.21 3.77
403 404 3.365472 GTTTAGGGCATCTCCAATGGTT 58.635 45.455 0.00 0.00 36.21 3.67
404 405 2.683742 CGTTTAGGGCATCTCCAATGGT 60.684 50.000 0.00 0.00 36.21 3.55
405 406 1.949525 CGTTTAGGGCATCTCCAATGG 59.050 52.381 0.00 0.00 36.21 3.16
406 407 1.949525 CCGTTTAGGGCATCTCCAATG 59.050 52.381 0.00 0.00 36.21 2.82
407 408 2.348411 CCGTTTAGGGCATCTCCAAT 57.652 50.000 0.00 0.00 36.21 3.16
408 409 3.873781 CCGTTTAGGGCATCTCCAA 57.126 52.632 0.00 0.00 36.21 3.53
418 419 5.361427 ACAAAATTGTTTTCCCCGTTTAGG 58.639 37.500 0.00 0.00 38.47 2.69
436 437 7.569591 CGGACAAAACAGTTAAGCAAAACAAAA 60.570 33.333 4.30 0.00 0.00 2.44
439 440 4.859798 CGGACAAAACAGTTAAGCAAAACA 59.140 37.500 4.30 0.00 0.00 2.83
462 463 3.365220 CGACTCTTCAACGGAACTTCATC 59.635 47.826 0.00 0.00 0.00 2.92
477 478 4.372656 GGCTAACATTATGCTCGACTCTT 58.627 43.478 0.00 0.00 0.00 2.85
531 532 9.784531 CATGGACAGTGTTTATATTCCTAATCT 57.215 33.333 0.00 0.00 0.00 2.40
532 533 9.778741 TCATGGACAGTGTTTATATTCCTAATC 57.221 33.333 0.00 0.00 0.00 1.75
534 535 9.559732 CATCATGGACAGTGTTTATATTCCTAA 57.440 33.333 0.00 0.00 0.00 2.69
757 814 1.519719 GAGGCTCTGAGCGGATTGT 59.480 57.895 22.25 3.59 43.62 2.71
788 845 1.150081 CAGGATGGGGTGGATCAGC 59.850 63.158 0.00 0.00 0.00 4.26
896 1326 3.282374 AACAGGGTGGGCCGATTCC 62.282 63.158 0.00 0.00 34.97 3.01
959 1389 9.950496 GTGTGATTTCCTCAATCCTGTATATAT 57.050 33.333 0.00 0.00 40.80 0.86
960 1390 9.159254 AGTGTGATTTCCTCAATCCTGTATATA 57.841 33.333 0.00 0.00 40.80 0.86
961 1391 8.038862 AGTGTGATTTCCTCAATCCTGTATAT 57.961 34.615 0.00 0.00 40.80 0.86
962 1392 7.437713 AGTGTGATTTCCTCAATCCTGTATA 57.562 36.000 0.00 0.00 40.80 1.47
963 1393 6.319048 AGTGTGATTTCCTCAATCCTGTAT 57.681 37.500 0.00 0.00 40.80 2.29
964 1394 5.762179 AGTGTGATTTCCTCAATCCTGTA 57.238 39.130 0.00 0.00 40.80 2.74
965 1395 4.647564 AGTGTGATTTCCTCAATCCTGT 57.352 40.909 0.00 0.00 40.80 4.00
980 1416 7.389330 TCGGCATCTTTAGAATTAAAAGTGTGA 59.611 33.333 16.16 11.52 35.79 3.58
1203 1647 0.743701 CAGCTCCAGGCACATCACTC 60.744 60.000 0.00 0.00 44.79 3.51
1287 1732 0.321564 TGGAGAAAGCGGTGATGGTG 60.322 55.000 0.00 0.00 0.00 4.17
1552 2009 4.141846 TGTCAGATAGTCCAATTCCAGCTC 60.142 45.833 0.00 0.00 0.00 4.09
1674 2382 5.151389 GGTACTTGAAAAACATTACCAGCG 58.849 41.667 0.00 0.00 37.41 5.18
2556 3488 0.806102 CTGTGGAACCGATAGCACCG 60.806 60.000 0.00 0.00 34.36 4.94
2570 3502 0.944386 CGTTCCTTTGTGGTCTGTGG 59.056 55.000 0.00 0.00 37.07 4.17
2573 3505 1.602377 GAACCGTTCCTTTGTGGTCTG 59.398 52.381 0.00 0.00 37.07 3.51
2574 3506 1.476291 GGAACCGTTCCTTTGTGGTCT 60.476 52.381 21.22 0.00 46.57 3.85
2575 3507 0.949397 GGAACCGTTCCTTTGTGGTC 59.051 55.000 21.22 0.00 46.57 4.02
2576 3508 3.105187 GGAACCGTTCCTTTGTGGT 57.895 52.632 21.22 0.00 46.57 4.16
2677 3609 7.398047 AGAAATTCCAATGATTCATGACAAGGA 59.602 33.333 0.00 1.02 0.00 3.36
2733 3665 0.958822 GTGGGATTTTCCAGCAACGT 59.041 50.000 0.00 0.00 38.64 3.99
2865 3813 3.204827 CCGCCGCCTTCCTCATTG 61.205 66.667 0.00 0.00 0.00 2.82
2938 3886 1.994779 GCATTTTCGGAAGGCAACATG 59.005 47.619 4.62 0.00 41.41 3.21
2955 3903 5.067413 CAGAAATGCTAGGATCAAACTGCAT 59.933 40.000 0.00 0.26 42.01 3.96
2956 3904 4.397103 CAGAAATGCTAGGATCAAACTGCA 59.603 41.667 0.00 0.00 34.88 4.41
2992 3970 8.930760 CGGAGCAATATAGATAGAAAAAGGAAG 58.069 37.037 0.00 0.00 0.00 3.46
2993 3971 8.429641 ACGGAGCAATATAGATAGAAAAAGGAA 58.570 33.333 0.00 0.00 0.00 3.36
2994 3972 7.963532 ACGGAGCAATATAGATAGAAAAAGGA 58.036 34.615 0.00 0.00 0.00 3.36
2995 3973 8.608844 AACGGAGCAATATAGATAGAAAAAGG 57.391 34.615 0.00 0.00 0.00 3.11
3013 3991 6.867293 CCTTGTATTAGTAATAGGAACGGAGC 59.133 42.308 2.71 0.00 0.00 4.70
3014 3992 7.232127 TCCCTTGTATTAGTAATAGGAACGGAG 59.768 40.741 10.60 2.47 0.00 4.63
3043 4021 9.990360 TCCTTCTAATCACGCAACAAATATATA 57.010 29.630 0.00 0.00 0.00 0.86
3070 4048 3.836949 ACACAAACTTGCAGTGAAAGTG 58.163 40.909 17.56 8.47 37.90 3.16
3166 4146 5.695851 AACAACCAATATATAGCAGCAGC 57.304 39.130 0.00 0.00 42.56 5.25
3167 4147 8.595533 CGTATAACAACCAATATATAGCAGCAG 58.404 37.037 0.00 0.00 0.00 4.24
3168 4148 8.308207 TCGTATAACAACCAATATATAGCAGCA 58.692 33.333 0.00 0.00 0.00 4.41
3170 4150 9.856488 ACTCGTATAACAACCAATATATAGCAG 57.144 33.333 0.00 0.00 0.00 4.24
3171 4151 9.850628 GACTCGTATAACAACCAATATATAGCA 57.149 33.333 0.00 0.00 0.00 3.49
3172 4152 9.850628 TGACTCGTATAACAACCAATATATAGC 57.149 33.333 0.00 0.00 0.00 2.97
3177 4157 9.095065 GACTTTGACTCGTATAACAACCAATAT 57.905 33.333 0.00 0.00 0.00 1.28
3178 4158 7.546667 GGACTTTGACTCGTATAACAACCAATA 59.453 37.037 0.00 0.00 0.00 1.90
3179 4159 6.370718 GGACTTTGACTCGTATAACAACCAAT 59.629 38.462 0.00 0.00 0.00 3.16
3181 4161 5.221481 TGGACTTTGACTCGTATAACAACCA 60.221 40.000 0.00 0.00 0.00 3.67
3182 4162 5.232463 TGGACTTTGACTCGTATAACAACC 58.768 41.667 0.00 0.00 0.00 3.77
3183 4163 6.201425 TGTTGGACTTTGACTCGTATAACAAC 59.799 38.462 0.00 0.00 35.27 3.32
3184 4164 6.282167 TGTTGGACTTTGACTCGTATAACAA 58.718 36.000 0.00 0.00 0.00 2.83
3187 4167 4.927425 GCTGTTGGACTTTGACTCGTATAA 59.073 41.667 0.00 0.00 0.00 0.98
3188 4168 4.219944 AGCTGTTGGACTTTGACTCGTATA 59.780 41.667 0.00 0.00 0.00 1.47
3189 4169 3.006967 AGCTGTTGGACTTTGACTCGTAT 59.993 43.478 0.00 0.00 0.00 3.06
3190 4170 2.364324 AGCTGTTGGACTTTGACTCGTA 59.636 45.455 0.00 0.00 0.00 3.43
3191 4171 1.139058 AGCTGTTGGACTTTGACTCGT 59.861 47.619 0.00 0.00 0.00 4.18
3192 4172 1.528586 CAGCTGTTGGACTTTGACTCG 59.471 52.381 5.25 0.00 0.00 4.18
3193 4173 1.265365 GCAGCTGTTGGACTTTGACTC 59.735 52.381 16.64 0.00 0.00 3.36
3194 4174 1.133976 AGCAGCTGTTGGACTTTGACT 60.134 47.619 16.64 0.00 0.00 3.41
3195 4175 1.002033 CAGCAGCTGTTGGACTTTGAC 60.002 52.381 21.75 0.00 0.00 3.18
3196 4176 1.311859 CAGCAGCTGTTGGACTTTGA 58.688 50.000 21.75 0.00 0.00 2.69
3197 4177 0.318445 GCAGCAGCTGTTGGACTTTG 60.318 55.000 28.73 5.15 37.91 2.77
3198 4178 2.036236 GCAGCAGCTGTTGGACTTT 58.964 52.632 28.73 0.00 37.91 2.66
3199 4179 3.755434 GCAGCAGCTGTTGGACTT 58.245 55.556 28.73 0.00 37.91 3.01
3209 4189 5.695851 AACAACCAATATATAGCAGCAGC 57.304 39.130 0.00 0.00 42.56 5.25
3210 4190 8.595533 CGTATAACAACCAATATATAGCAGCAG 58.404 37.037 0.00 0.00 0.00 4.24
3211 4191 8.308207 TCGTATAACAACCAATATATAGCAGCA 58.692 33.333 0.00 0.00 0.00 4.41
3212 4192 8.697846 TCGTATAACAACCAATATATAGCAGC 57.302 34.615 0.00 0.00 0.00 5.25
3213 4193 9.856488 ACTCGTATAACAACCAATATATAGCAG 57.144 33.333 0.00 0.00 0.00 4.24
3214 4194 9.850628 GACTCGTATAACAACCAATATATAGCA 57.149 33.333 0.00 0.00 0.00 3.49
3215 4195 9.850628 TGACTCGTATAACAACCAATATATAGC 57.149 33.333 0.00 0.00 0.00 2.97
3220 4200 9.095065 GACTTTGACTCGTATAACAACCAATAT 57.905 33.333 0.00 0.00 0.00 1.28
3317 4297 0.454957 CCCGCGAGTTTTGCAGATTG 60.455 55.000 8.23 0.00 0.00 2.67
3318 4298 0.605319 TCCCGCGAGTTTTGCAGATT 60.605 50.000 8.23 0.00 0.00 2.40
3320 4300 0.816018 TTTCCCGCGAGTTTTGCAGA 60.816 50.000 8.23 0.00 0.00 4.26
3443 4494 1.379527 CCCAAACTACATCCGGCTTC 58.620 55.000 0.00 0.00 0.00 3.86
3597 4987 4.279671 TGCCGGTTGAATTCACTAAAACAT 59.720 37.500 7.89 0.00 0.00 2.71
3606 4996 0.400213 AGAGGTGCCGGTTGAATTCA 59.600 50.000 3.38 3.38 0.00 2.57
3617 5007 1.005630 CGGCTGCTATAGAGGTGCC 60.006 63.158 3.21 9.39 37.24 5.01
3619 5009 3.875838 GACGGCTGCTATAGAGGTG 57.124 57.895 3.21 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.