Multiple sequence alignment - TraesCS2B01G594500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G594500 chr2B 100.000 3718 0 0 1 3718 779103747 779100030 0.000000e+00 6866.0
1 TraesCS2B01G594500 chr2D 93.408 2928 119 36 1 2906 635094994 635092119 0.000000e+00 4270.0
2 TraesCS2B01G594500 chr2D 80.632 253 22 9 2490 2721 635091997 635091751 1.780000e-38 171.0
3 TraesCS2B01G594500 chr2A 92.057 2392 127 26 145 2510 778018772 778021126 0.000000e+00 3306.0
4 TraesCS2B01G594500 chr2A 88.283 367 27 6 2538 2903 778021122 778021473 3.430000e-115 425.0
5 TraesCS2B01G594500 chr2A 87.923 207 17 6 3461 3660 778021634 778021839 1.730000e-58 237.0
6 TraesCS2B01G594500 chr2A 90.789 152 12 1 1 152 778017151 778017300 6.300000e-48 202.0
7 TraesCS2B01G594500 chr2A 94.595 111 5 1 3122 3231 778021515 778021625 1.780000e-38 171.0
8 TraesCS2B01G594500 chr2A 97.561 41 1 0 3678 3718 778021838 778021878 1.850000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G594500 chr2B 779100030 779103747 3717 True 6866.000000 6866 100.000 1 3718 1 chr2B.!!$R1 3717
1 TraesCS2B01G594500 chr2D 635091751 635094994 3243 True 2220.500000 4270 87.020 1 2906 2 chr2D.!!$R1 2905
2 TraesCS2B01G594500 chr2A 778017151 778021878 4727 False 735.383333 3306 91.868 1 3718 6 chr2A.!!$F1 3717

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
569 2065 0.027979 CATGAAGGTACAATGCGGCG 59.972 55.0 0.51 0.51 0.00 6.46 F
617 2113 0.035820 GATGGTTAGGCCGTTGGTGA 60.036 55.0 0.00 0.00 41.21 4.02 F
631 2127 0.108377 TGGTGATGGACGGATCAACG 60.108 55.0 0.00 0.00 42.17 4.10 F
1067 2578 0.681243 GCAAACCCCACCATCTCCTC 60.681 60.0 0.00 0.00 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1740 3255 0.100682 TTATCAGAGACACGGCGAGC 59.899 55.0 16.62 1.82 0.00 5.03 R
2241 3756 0.541998 TGAACTCCTCCTCGAAGGCA 60.542 55.0 0.00 0.00 36.29 4.75 R
2564 4079 0.733150 GGATGCCGCTCAAGTTTACC 59.267 55.0 0.00 0.00 0.00 2.85 R
3048 4586 0.250858 TGTGCAGTGAGTTCCATGGG 60.251 55.0 13.02 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 7.860872 ACTGACGTGATTTTTACCTCATTTTTC 59.139 33.333 0.00 0.00 0.00 2.29
59 61 6.613755 TTTTCTGTACTTTTGTCCTAGTGC 57.386 37.500 0.00 0.00 0.00 4.40
60 62 3.909430 TCTGTACTTTTGTCCTAGTGCG 58.091 45.455 0.00 0.00 30.72 5.34
97 99 3.290710 CGAATGGGATCCTGGTGAAAAT 58.709 45.455 12.58 0.00 0.00 1.82
100 102 5.687441 CGAATGGGATCCTGGTGAAAATAGA 60.687 44.000 12.58 0.00 0.00 1.98
132 134 0.041576 GCGGACGCGATAAAATTCCC 60.042 55.000 15.93 0.00 0.00 3.97
191 1672 9.981114 ATAAAAAGTAGTTGGAAATTGGACTTG 57.019 29.630 0.00 0.00 0.00 3.16
257 1738 3.668447 TCAGCTTCAAGTGATCAAGGAC 58.332 45.455 0.00 0.00 0.00 3.85
272 1753 4.817517 TCAAGGACGAGTCTTTGGATTAC 58.182 43.478 22.13 0.00 43.97 1.89
290 1784 6.373216 TGGATTACCACACCTTTTTCTATTCG 59.627 38.462 0.00 0.00 41.77 3.34
311 1805 5.143660 TCGACTATTCAAACATGCAAAACG 58.856 37.500 0.00 0.00 0.00 3.60
314 1808 6.072112 ACTATTCAAACATGCAAAACGAGT 57.928 33.333 0.00 0.00 0.00 4.18
426 1920 5.812127 CCGAATACAAGAATCACATGACTGA 59.188 40.000 0.00 0.00 0.00 3.41
429 1923 7.463780 CGAATACAAGAATCACATGACTGACTG 60.464 40.741 0.00 0.00 0.00 3.51
482 1976 0.320771 CCTGCATATAGGGCCGACAC 60.321 60.000 0.00 0.00 34.06 3.67
552 2048 0.261696 GGGTGTTAAGGGATGGCCAT 59.738 55.000 20.96 20.96 35.15 4.40
562 2058 1.064017 GGGATGGCCATGAAGGTACAA 60.064 52.381 26.56 0.00 40.61 2.41
569 2065 0.027979 CATGAAGGTACAATGCGGCG 59.972 55.000 0.51 0.51 0.00 6.46
617 2113 0.035820 GATGGTTAGGCCGTTGGTGA 60.036 55.000 0.00 0.00 41.21 4.02
618 2114 0.623723 ATGGTTAGGCCGTTGGTGAT 59.376 50.000 0.00 0.00 41.21 3.06
619 2115 0.322098 TGGTTAGGCCGTTGGTGATG 60.322 55.000 0.00 0.00 41.21 3.07
631 2127 0.108377 TGGTGATGGACGGATCAACG 60.108 55.000 0.00 0.00 42.17 4.10
634 2130 0.892063 TGATGGACGGATCAACGACA 59.108 50.000 0.00 0.00 37.61 4.35
639 2135 1.135527 GGACGGATCAACGACATGGTA 59.864 52.381 0.00 0.00 37.61 3.25
645 2141 5.953363 CGGATCAACGACATGGTACACTTG 61.953 50.000 0.00 0.00 37.27 3.16
658 2154 3.243501 GGTACACTTGTCTACAACGGTGA 60.244 47.826 7.88 0.00 37.53 4.02
699 2195 3.423907 CGGTACAATTTTTCTTCCGTCGG 60.424 47.826 4.39 4.39 33.20 4.79
881 2391 8.232913 TGGATTTTTATCAAGTAGCAATACCC 57.767 34.615 0.00 0.00 0.00 3.69
1064 2575 2.046285 CGGCAAACCCCACCATCTC 61.046 63.158 0.00 0.00 0.00 2.75
1065 2576 1.682344 GGCAAACCCCACCATCTCC 60.682 63.158 0.00 0.00 0.00 3.71
1066 2577 1.384191 GCAAACCCCACCATCTCCT 59.616 57.895 0.00 0.00 0.00 3.69
1067 2578 0.681243 GCAAACCCCACCATCTCCTC 60.681 60.000 0.00 0.00 0.00 3.71
1076 2587 2.283809 CATCTCCTCCCTCCCCGT 59.716 66.667 0.00 0.00 0.00 5.28
1450 2964 3.520862 GCCCCATACGACGACCGA 61.521 66.667 0.00 0.00 41.76 4.69
1453 2967 1.588139 CCCATACGACGACCGAAGC 60.588 63.158 0.00 0.00 41.76 3.86
1485 2999 3.490759 CAGCCGCAGTTACAGCCG 61.491 66.667 0.00 0.00 0.00 5.52
1707 3222 4.093011 CCCATTTCCATTCCAACCTACAA 58.907 43.478 0.00 0.00 0.00 2.41
1725 3240 2.538449 ACAACACGTTTCGTCATCTGTC 59.462 45.455 0.00 0.00 38.32 3.51
1734 3249 1.064654 TCGTCATCTGTCGATCAGCTG 59.935 52.381 7.63 7.63 43.32 4.24
1735 3250 1.064654 CGTCATCTGTCGATCAGCTGA 59.935 52.381 20.79 20.79 43.94 4.26
1736 3251 2.287487 CGTCATCTGTCGATCAGCTGAT 60.287 50.000 29.09 29.09 46.36 2.90
1737 3252 3.715495 GTCATCTGTCGATCAGCTGATT 58.285 45.455 29.26 13.91 46.36 2.57
1738 3253 3.735240 GTCATCTGTCGATCAGCTGATTC 59.265 47.826 29.26 21.22 46.36 2.52
1739 3254 3.382546 TCATCTGTCGATCAGCTGATTCA 59.617 43.478 29.26 23.98 42.14 2.57
1740 3255 3.433513 TCTGTCGATCAGCTGATTCAG 57.566 47.619 30.13 30.13 43.32 3.02
1766 3281 2.418976 CCGTGTCTCTGATAACTCGTCA 59.581 50.000 11.31 0.00 32.24 4.35
1998 3513 2.815647 GAGCGCACCTGCCACTAC 60.816 66.667 11.47 0.00 37.91 2.73
2241 3756 1.452651 CTGCATCCGCCCTGACAAT 60.453 57.895 0.00 0.00 37.32 2.71
2282 3797 1.320344 TACGAGCTGAAGATGCCGGT 61.320 55.000 1.90 0.00 0.00 5.28
2397 3912 4.335647 CCTGACAAGCTGCCCGGT 62.336 66.667 0.00 0.00 0.00 5.28
2510 4025 3.343617 GTTCTGGTTGCAGCATTACCTA 58.656 45.455 15.89 3.45 33.05 3.08
2543 4058 4.288105 AGGATAGGATTAATGTCTGCCTGG 59.712 45.833 0.00 0.00 0.00 4.45
2564 4079 2.969628 AGAGTTCTGTTCATAGCCGG 57.030 50.000 0.00 0.00 0.00 6.13
2702 4219 2.634940 TGTCTTTTCTGAGGAGGGTGAG 59.365 50.000 0.00 0.00 0.00 3.51
2703 4220 1.625818 TCTTTTCTGAGGAGGGTGAGC 59.374 52.381 0.00 0.00 0.00 4.26
2722 4239 3.228453 AGCTGGGATATGCTGAATTTGG 58.772 45.455 0.00 0.00 38.21 3.28
2731 4248 1.892474 TGCTGAATTTGGTGGTAAGCC 59.108 47.619 0.00 0.00 0.00 4.35
2732 4249 2.171003 GCTGAATTTGGTGGTAAGCCT 58.829 47.619 0.00 0.00 35.27 4.58
2771 4288 0.179111 TGGACGTGGCGATCTTGATC 60.179 55.000 0.00 0.78 0.00 2.92
2862 4379 7.330946 TGGTCGTGAGTTCATTAGTTTATTCTG 59.669 37.037 0.00 0.00 0.00 3.02
2870 4390 9.535878 AGTTCATTAGTTTATTCTGCTAGTAGC 57.464 33.333 15.56 15.56 42.82 3.58
2884 4404 3.431486 GCTAGTAGCTTTCAGATGGTGCT 60.431 47.826 15.16 0.00 38.45 4.40
2903 4423 3.758554 TGCTTGCTGGAGTTTATTCTTCC 59.241 43.478 0.00 0.00 0.00 3.46
2936 4474 4.970860 ATAGCATATCTGGTGACTGCTT 57.029 40.909 0.10 0.00 41.66 3.91
2939 4477 2.357009 GCATATCTGGTGACTGCTTTGG 59.643 50.000 0.00 0.00 33.76 3.28
2940 4478 2.113860 TATCTGGTGACTGCTTTGGC 57.886 50.000 0.00 0.00 39.26 4.52
2950 4488 2.725811 TGCTTTGGCATTTCGTGGA 58.274 47.368 0.00 0.00 44.28 4.02
2954 4492 2.412770 GCTTTGGCATTTCGTGGATTTG 59.587 45.455 0.00 0.00 38.54 2.32
2957 4495 1.336702 TGGCATTTCGTGGATTTGCAC 60.337 47.619 0.00 0.00 35.04 4.57
2958 4496 1.349234 GCATTTCGTGGATTTGCACC 58.651 50.000 0.00 0.00 33.58 5.01
2959 4497 1.336702 GCATTTCGTGGATTTGCACCA 60.337 47.619 0.00 0.00 33.58 4.17
2960 4498 2.674747 GCATTTCGTGGATTTGCACCAT 60.675 45.455 0.00 0.00 39.69 3.55
2964 4502 2.016318 TCGTGGATTTGCACCATCATC 58.984 47.619 7.26 0.15 39.69 2.92
2965 4503 1.744522 CGTGGATTTGCACCATCATCA 59.255 47.619 7.26 0.00 39.69 3.07
2966 4504 2.359848 CGTGGATTTGCACCATCATCAT 59.640 45.455 7.26 0.00 39.69 2.45
2968 4506 4.036616 CGTGGATTTGCACCATCATCATTA 59.963 41.667 7.26 0.00 39.69 1.90
2970 4508 5.924254 GTGGATTTGCACCATCATCATTATG 59.076 40.000 7.26 0.00 39.69 1.90
2971 4509 5.834204 TGGATTTGCACCATCATCATTATGA 59.166 36.000 0.00 0.00 46.01 2.15
2992 4530 9.585099 TTATGATAGTTTTGATTGCATTGTTCC 57.415 29.630 0.00 0.00 0.00 3.62
2993 4531 6.990798 TGATAGTTTTGATTGCATTGTTCCA 58.009 32.000 0.00 0.00 0.00 3.53
2994 4532 7.613585 TGATAGTTTTGATTGCATTGTTCCAT 58.386 30.769 0.00 0.00 0.00 3.41
2995 4533 7.760794 TGATAGTTTTGATTGCATTGTTCCATC 59.239 33.333 0.00 0.00 0.00 3.51
2996 4534 6.105397 AGTTTTGATTGCATTGTTCCATCT 57.895 33.333 0.00 0.00 0.00 2.90
2997 4535 5.929992 AGTTTTGATTGCATTGTTCCATCTG 59.070 36.000 0.00 0.00 0.00 2.90
2998 4536 5.725325 TTTGATTGCATTGTTCCATCTGA 57.275 34.783 0.00 0.00 0.00 3.27
2999 4537 5.725325 TTGATTGCATTGTTCCATCTGAA 57.275 34.783 0.00 0.00 0.00 3.02
3000 4538 5.319140 TGATTGCATTGTTCCATCTGAAG 57.681 39.130 0.00 0.00 32.37 3.02
3001 4539 5.011586 TGATTGCATTGTTCCATCTGAAGA 58.988 37.500 0.00 0.00 32.37 2.87
3002 4540 5.124936 TGATTGCATTGTTCCATCTGAAGAG 59.875 40.000 0.00 0.00 32.37 2.85
3003 4541 2.751259 TGCATTGTTCCATCTGAAGAGC 59.249 45.455 0.00 0.00 32.37 4.09
3004 4542 3.015327 GCATTGTTCCATCTGAAGAGCT 58.985 45.455 0.00 0.00 32.37 4.09
3005 4543 3.442977 GCATTGTTCCATCTGAAGAGCTT 59.557 43.478 0.00 0.00 32.37 3.74
3006 4544 4.438472 GCATTGTTCCATCTGAAGAGCTTC 60.438 45.833 3.32 3.32 39.91 3.86
3007 4545 4.630644 TTGTTCCATCTGAAGAGCTTCT 57.369 40.909 11.16 0.00 40.14 2.85
3008 4546 5.745312 TTGTTCCATCTGAAGAGCTTCTA 57.255 39.130 11.16 1.00 40.14 2.10
3009 4547 5.336150 TGTTCCATCTGAAGAGCTTCTAG 57.664 43.478 11.16 7.34 40.14 2.43
3010 4548 4.161189 TGTTCCATCTGAAGAGCTTCTAGG 59.839 45.833 11.16 7.75 40.14 3.02
3011 4549 4.256983 TCCATCTGAAGAGCTTCTAGGA 57.743 45.455 11.16 9.55 40.14 2.94
3012 4550 4.813809 TCCATCTGAAGAGCTTCTAGGAT 58.186 43.478 11.16 9.02 40.14 3.24
3013 4551 5.215069 TCCATCTGAAGAGCTTCTAGGATT 58.785 41.667 11.16 0.00 40.14 3.01
3014 4552 5.664908 TCCATCTGAAGAGCTTCTAGGATTT 59.335 40.000 11.16 0.00 40.14 2.17
3015 4553 6.841229 TCCATCTGAAGAGCTTCTAGGATTTA 59.159 38.462 11.16 2.16 40.14 1.40
3016 4554 6.928492 CCATCTGAAGAGCTTCTAGGATTTAC 59.072 42.308 11.16 0.00 40.14 2.01
3017 4555 7.201992 CCATCTGAAGAGCTTCTAGGATTTACT 60.202 40.741 11.16 0.00 40.14 2.24
3018 4556 8.855110 CATCTGAAGAGCTTCTAGGATTTACTA 58.145 37.037 11.16 0.00 40.14 1.82
3019 4557 9.600432 ATCTGAAGAGCTTCTAGGATTTACTAT 57.400 33.333 11.16 0.00 40.14 2.12
3020 4558 9.073475 TCTGAAGAGCTTCTAGGATTTACTATC 57.927 37.037 11.16 0.00 40.14 2.08
3021 4559 9.077885 CTGAAGAGCTTCTAGGATTTACTATCT 57.922 37.037 11.16 0.00 40.14 1.98
3022 4560 8.855110 TGAAGAGCTTCTAGGATTTACTATCTG 58.145 37.037 11.16 0.00 40.14 2.90
3023 4561 7.227049 AGAGCTTCTAGGATTTACTATCTGC 57.773 40.000 0.00 0.00 0.00 4.26
3024 4562 6.780031 AGAGCTTCTAGGATTTACTATCTGCA 59.220 38.462 0.00 0.00 0.00 4.41
3025 4563 7.454380 AGAGCTTCTAGGATTTACTATCTGCAT 59.546 37.037 0.00 0.00 0.00 3.96
3046 4584 8.071122 TGCATATTGTTTGTTAGTTTTTCTGC 57.929 30.769 0.00 0.00 0.00 4.26
3048 4586 8.427774 GCATATTGTTTGTTAGTTTTTCTGCTC 58.572 33.333 0.00 0.00 0.00 4.26
3049 4587 8.915654 CATATTGTTTGTTAGTTTTTCTGCTCC 58.084 33.333 0.00 0.00 0.00 4.70
3052 4590 5.362430 TGTTTGTTAGTTTTTCTGCTCCCAT 59.638 36.000 0.00 0.00 0.00 4.00
3053 4591 5.452078 TTGTTAGTTTTTCTGCTCCCATG 57.548 39.130 0.00 0.00 0.00 3.66
3054 4592 3.826157 TGTTAGTTTTTCTGCTCCCATGG 59.174 43.478 4.14 4.14 0.00 3.66
3055 4593 2.978156 AGTTTTTCTGCTCCCATGGA 57.022 45.000 15.22 0.00 0.00 3.41
3056 4594 3.243359 AGTTTTTCTGCTCCCATGGAA 57.757 42.857 15.22 0.00 0.00 3.53
3057 4595 2.893489 AGTTTTTCTGCTCCCATGGAAC 59.107 45.455 15.22 6.18 0.00 3.62
3058 4596 2.893489 GTTTTTCTGCTCCCATGGAACT 59.107 45.455 15.22 0.00 0.00 3.01
3060 4598 1.361204 TTCTGCTCCCATGGAACTCA 58.639 50.000 15.22 4.58 0.00 3.41
3061 4599 0.615331 TCTGCTCCCATGGAACTCAC 59.385 55.000 15.22 0.00 0.00 3.51
3063 4601 0.325933 TGCTCCCATGGAACTCACTG 59.674 55.000 15.22 0.00 0.00 3.66
3064 4602 1.028868 GCTCCCATGGAACTCACTGC 61.029 60.000 15.22 1.60 0.00 4.40
3065 4603 0.325933 CTCCCATGGAACTCACTGCA 59.674 55.000 15.22 0.00 0.00 4.41
3066 4604 0.036732 TCCCATGGAACTCACTGCAC 59.963 55.000 15.22 0.00 0.00 4.57
3067 4605 0.250858 CCCATGGAACTCACTGCACA 60.251 55.000 15.22 0.00 0.00 4.57
3069 4607 2.356022 CCCATGGAACTCACTGCACATA 60.356 50.000 15.22 0.00 0.00 2.29
3070 4608 2.941064 CCATGGAACTCACTGCACATAG 59.059 50.000 5.56 0.00 0.00 2.23
3071 4609 2.768253 TGGAACTCACTGCACATAGG 57.232 50.000 0.00 0.00 0.00 2.57
3072 4610 1.977854 TGGAACTCACTGCACATAGGT 59.022 47.619 0.00 0.00 0.00 3.08
3088 4688 5.671493 ACATAGGTGACTTGTAGTATTGGC 58.329 41.667 0.00 0.00 43.67 4.52
3092 4692 3.368116 GGTGACTTGTAGTATTGGCGACT 60.368 47.826 0.00 0.00 0.00 4.18
3094 4694 4.689345 GTGACTTGTAGTATTGGCGACTTT 59.311 41.667 0.00 0.00 0.00 2.66
3101 4701 6.225318 TGTAGTATTGGCGACTTTGTTAGTT 58.775 36.000 0.00 0.00 37.17 2.24
3144 4750 0.921896 ACATGGAAGCATGGGTAGCT 59.078 50.000 0.00 0.00 45.97 3.32
3231 4847 6.487689 TTTGTTGGTAAGCTTTTGTTTTGG 57.512 33.333 3.20 0.00 0.00 3.28
3234 4850 3.526534 TGGTAAGCTTTTGTTTTGGTGC 58.473 40.909 3.20 0.00 0.00 5.01
3236 4852 4.188462 GGTAAGCTTTTGTTTTGGTGCTT 58.812 39.130 3.20 0.00 42.36 3.91
3237 4853 4.033932 GGTAAGCTTTTGTTTTGGTGCTTG 59.966 41.667 3.20 0.00 40.36 4.01
3238 4854 3.333029 AGCTTTTGTTTTGGTGCTTGT 57.667 38.095 0.00 0.00 0.00 3.16
3239 4855 3.261580 AGCTTTTGTTTTGGTGCTTGTC 58.738 40.909 0.00 0.00 0.00 3.18
3240 4856 3.055891 AGCTTTTGTTTTGGTGCTTGTCT 60.056 39.130 0.00 0.00 0.00 3.41
3241 4857 3.062504 GCTTTTGTTTTGGTGCTTGTCTG 59.937 43.478 0.00 0.00 0.00 3.51
3242 4858 2.957491 TTGTTTTGGTGCTTGTCTGG 57.043 45.000 0.00 0.00 0.00 3.86
3243 4859 2.136298 TGTTTTGGTGCTTGTCTGGA 57.864 45.000 0.00 0.00 0.00 3.86
3244 4860 2.665165 TGTTTTGGTGCTTGTCTGGAT 58.335 42.857 0.00 0.00 0.00 3.41
3245 4861 2.361757 TGTTTTGGTGCTTGTCTGGATG 59.638 45.455 0.00 0.00 0.00 3.51
3246 4862 2.362077 GTTTTGGTGCTTGTCTGGATGT 59.638 45.455 0.00 0.00 0.00 3.06
3247 4863 1.608055 TTGGTGCTTGTCTGGATGTG 58.392 50.000 0.00 0.00 0.00 3.21
3248 4864 0.764271 TGGTGCTTGTCTGGATGTGA 59.236 50.000 0.00 0.00 0.00 3.58
3249 4865 1.160137 GGTGCTTGTCTGGATGTGAC 58.840 55.000 0.00 0.00 35.21 3.67
3250 4866 0.792640 GTGCTTGTCTGGATGTGACG 59.207 55.000 0.00 0.00 37.26 4.35
3251 4867 0.678950 TGCTTGTCTGGATGTGACGA 59.321 50.000 0.00 0.00 37.26 4.20
3252 4868 1.276138 TGCTTGTCTGGATGTGACGAT 59.724 47.619 0.00 0.00 37.26 3.73
3253 4869 1.929836 GCTTGTCTGGATGTGACGATC 59.070 52.381 0.00 0.00 37.26 3.69
3254 4870 2.417924 GCTTGTCTGGATGTGACGATCT 60.418 50.000 0.00 0.00 37.26 2.75
3255 4871 3.854666 CTTGTCTGGATGTGACGATCTT 58.145 45.455 0.00 0.00 37.26 2.40
3256 4872 3.236632 TGTCTGGATGTGACGATCTTG 57.763 47.619 0.00 0.00 37.26 3.02
3257 4873 2.825532 TGTCTGGATGTGACGATCTTGA 59.174 45.455 0.00 0.00 37.26 3.02
3258 4874 3.448660 TGTCTGGATGTGACGATCTTGAT 59.551 43.478 0.00 0.00 37.26 2.57
3259 4875 3.801050 GTCTGGATGTGACGATCTTGATG 59.199 47.826 0.00 0.00 0.00 3.07
3260 4876 3.448660 TCTGGATGTGACGATCTTGATGT 59.551 43.478 0.00 0.00 0.00 3.06
3261 4877 4.081476 TCTGGATGTGACGATCTTGATGTT 60.081 41.667 0.00 0.00 0.00 2.71
3262 4878 3.934579 TGGATGTGACGATCTTGATGTTG 59.065 43.478 0.00 0.00 0.00 3.33
3263 4879 4.183865 GGATGTGACGATCTTGATGTTGA 58.816 43.478 0.00 0.00 0.00 3.18
3264 4880 4.631377 GGATGTGACGATCTTGATGTTGAA 59.369 41.667 0.00 0.00 0.00 2.69
3265 4881 5.122239 GGATGTGACGATCTTGATGTTGAAA 59.878 40.000 0.00 0.00 0.00 2.69
3266 4882 6.183360 GGATGTGACGATCTTGATGTTGAAAT 60.183 38.462 0.00 0.00 0.00 2.17
3267 4883 5.930405 TGTGACGATCTTGATGTTGAAATG 58.070 37.500 0.00 0.00 0.00 2.32
3268 4884 5.106594 TGTGACGATCTTGATGTTGAAATGG 60.107 40.000 0.00 0.00 0.00 3.16
3269 4885 4.395854 TGACGATCTTGATGTTGAAATGGG 59.604 41.667 0.00 0.00 0.00 4.00
3270 4886 4.335416 ACGATCTTGATGTTGAAATGGGT 58.665 39.130 0.00 0.00 0.00 4.51
3271 4887 5.496556 ACGATCTTGATGTTGAAATGGGTA 58.503 37.500 0.00 0.00 0.00 3.69
3272 4888 5.943416 ACGATCTTGATGTTGAAATGGGTAA 59.057 36.000 0.00 0.00 0.00 2.85
3273 4889 6.128007 ACGATCTTGATGTTGAAATGGGTAAC 60.128 38.462 0.00 0.00 0.00 2.50
3287 4903 2.589338 GGTAACCGCTGTTTCTTTCG 57.411 50.000 0.00 0.00 35.87 3.46
3288 4904 1.196127 GGTAACCGCTGTTTCTTTCGG 59.804 52.381 0.00 0.00 46.61 4.30
3291 4907 1.574428 CCGCTGTTTCTTTCGGTGG 59.426 57.895 0.00 0.00 37.33 4.61
3292 4908 0.882927 CCGCTGTTTCTTTCGGTGGA 60.883 55.000 0.00 0.00 42.48 4.02
3293 4909 1.156736 CGCTGTTTCTTTCGGTGGAT 58.843 50.000 0.00 0.00 0.00 3.41
3294 4910 1.535462 CGCTGTTTCTTTCGGTGGATT 59.465 47.619 0.00 0.00 0.00 3.01
3295 4911 2.665519 CGCTGTTTCTTTCGGTGGATTG 60.666 50.000 0.00 0.00 0.00 2.67
3296 4912 2.922335 GCTGTTTCTTTCGGTGGATTGC 60.922 50.000 0.00 0.00 0.00 3.56
3297 4913 1.611491 TGTTTCTTTCGGTGGATTGCC 59.389 47.619 0.00 0.00 0.00 4.52
3298 4914 1.886542 GTTTCTTTCGGTGGATTGCCT 59.113 47.619 0.00 0.00 34.31 4.75
3299 4915 3.078837 GTTTCTTTCGGTGGATTGCCTA 58.921 45.455 0.00 0.00 34.31 3.93
3300 4916 2.691409 TCTTTCGGTGGATTGCCTAG 57.309 50.000 0.00 0.00 34.31 3.02
3301 4917 2.184533 TCTTTCGGTGGATTGCCTAGA 58.815 47.619 0.00 0.00 34.31 2.43
3302 4918 2.771943 TCTTTCGGTGGATTGCCTAGAT 59.228 45.455 0.00 0.00 34.31 1.98
3303 4919 2.620251 TTCGGTGGATTGCCTAGATG 57.380 50.000 0.00 0.00 34.31 2.90
3304 4920 0.106708 TCGGTGGATTGCCTAGATGC 59.893 55.000 0.00 0.00 34.31 3.91
3305 4921 0.107456 CGGTGGATTGCCTAGATGCT 59.893 55.000 0.00 0.00 34.31 3.79
3306 4922 1.602311 GGTGGATTGCCTAGATGCTG 58.398 55.000 0.00 0.00 34.31 4.41
3307 4923 0.950116 GTGGATTGCCTAGATGCTGC 59.050 55.000 0.00 0.00 34.31 5.25
3308 4924 0.841961 TGGATTGCCTAGATGCTGCT 59.158 50.000 0.00 0.00 34.31 4.24
3309 4925 1.236628 GGATTGCCTAGATGCTGCTG 58.763 55.000 0.00 0.00 0.00 4.41
3310 4926 1.476471 GGATTGCCTAGATGCTGCTGT 60.476 52.381 0.00 0.00 0.00 4.40
3311 4927 1.872313 GATTGCCTAGATGCTGCTGTC 59.128 52.381 0.00 0.00 0.00 3.51
3312 4928 0.907486 TTGCCTAGATGCTGCTGTCT 59.093 50.000 11.65 11.65 0.00 3.41
3313 4929 1.780503 TGCCTAGATGCTGCTGTCTA 58.219 50.000 0.00 8.02 0.00 2.59
3314 4930 1.410517 TGCCTAGATGCTGCTGTCTAC 59.589 52.381 0.00 0.00 0.00 2.59
3315 4931 1.270041 GCCTAGATGCTGCTGTCTACC 60.270 57.143 0.00 0.00 0.00 3.18
3316 4932 1.000827 CCTAGATGCTGCTGTCTACCG 60.001 57.143 0.00 0.00 0.00 4.02
3317 4933 0.385751 TAGATGCTGCTGTCTACCGC 59.614 55.000 0.00 0.00 0.00 5.68
3318 4934 1.142748 GATGCTGCTGTCTACCGCT 59.857 57.895 0.00 0.00 0.00 5.52
3319 4935 0.460987 GATGCTGCTGTCTACCGCTT 60.461 55.000 0.00 0.00 0.00 4.68
3320 4936 0.742281 ATGCTGCTGTCTACCGCTTG 60.742 55.000 0.00 0.00 0.00 4.01
3321 4937 2.744768 GCTGCTGTCTACCGCTTGC 61.745 63.158 0.00 0.06 0.00 4.01
3322 4938 1.374631 CTGCTGTCTACCGCTTGCA 60.375 57.895 0.00 0.00 0.00 4.08
3323 4939 0.950555 CTGCTGTCTACCGCTTGCAA 60.951 55.000 0.00 0.00 0.00 4.08
3324 4940 0.950555 TGCTGTCTACCGCTTGCAAG 60.951 55.000 22.44 22.44 0.00 4.01
3325 4941 0.951040 GCTGTCTACCGCTTGCAAGT 60.951 55.000 26.55 11.44 0.00 3.16
3326 4942 1.512926 CTGTCTACCGCTTGCAAGTT 58.487 50.000 26.55 14.20 0.00 2.66
3327 4943 1.873591 CTGTCTACCGCTTGCAAGTTT 59.126 47.619 26.55 13.87 0.00 2.66
3328 4944 3.064207 CTGTCTACCGCTTGCAAGTTTA 58.936 45.455 26.55 14.23 0.00 2.01
3329 4945 3.064207 TGTCTACCGCTTGCAAGTTTAG 58.936 45.455 26.55 21.47 0.00 1.85
3330 4946 3.243941 TGTCTACCGCTTGCAAGTTTAGA 60.244 43.478 26.55 23.05 0.00 2.10
3331 4947 3.368236 GTCTACCGCTTGCAAGTTTAGAG 59.632 47.826 26.55 16.93 0.00 2.43
3332 4948 2.256117 ACCGCTTGCAAGTTTAGAGT 57.744 45.000 26.55 12.52 0.00 3.24
3333 4949 2.572290 ACCGCTTGCAAGTTTAGAGTT 58.428 42.857 26.55 1.53 0.00 3.01
3334 4950 2.949644 ACCGCTTGCAAGTTTAGAGTTT 59.050 40.909 26.55 0.01 0.00 2.66
3335 4951 4.131596 ACCGCTTGCAAGTTTAGAGTTTA 58.868 39.130 26.55 0.00 0.00 2.01
3336 4952 4.760204 ACCGCTTGCAAGTTTAGAGTTTAT 59.240 37.500 26.55 0.00 0.00 1.40
3337 4953 5.240844 ACCGCTTGCAAGTTTAGAGTTTATT 59.759 36.000 26.55 0.00 0.00 1.40
3338 4954 5.795441 CCGCTTGCAAGTTTAGAGTTTATTC 59.205 40.000 26.55 4.76 0.00 1.75
3339 4955 5.795441 CGCTTGCAAGTTTAGAGTTTATTCC 59.205 40.000 26.55 4.14 0.00 3.01
3340 4956 5.795441 GCTTGCAAGTTTAGAGTTTATTCCG 59.205 40.000 26.55 0.00 0.00 4.30
3341 4957 6.567891 GCTTGCAAGTTTAGAGTTTATTCCGT 60.568 38.462 26.55 0.00 0.00 4.69
3342 4958 6.476243 TGCAAGTTTAGAGTTTATTCCGTC 57.524 37.500 0.00 0.00 0.00 4.79
3343 4959 5.992829 TGCAAGTTTAGAGTTTATTCCGTCA 59.007 36.000 0.00 0.00 0.00 4.35
3344 4960 6.147164 TGCAAGTTTAGAGTTTATTCCGTCAG 59.853 38.462 0.00 0.00 0.00 3.51
3345 4961 6.147328 GCAAGTTTAGAGTTTATTCCGTCAGT 59.853 38.462 0.00 0.00 0.00 3.41
3346 4962 7.330208 GCAAGTTTAGAGTTTATTCCGTCAGTA 59.670 37.037 0.00 0.00 0.00 2.74
3347 4963 8.861101 CAAGTTTAGAGTTTATTCCGTCAGTAG 58.139 37.037 0.00 0.00 0.00 2.57
3348 4964 8.120140 AGTTTAGAGTTTATTCCGTCAGTAGT 57.880 34.615 0.00 0.00 0.00 2.73
3349 4965 8.583296 AGTTTAGAGTTTATTCCGTCAGTAGTT 58.417 33.333 0.00 0.00 0.00 2.24
3350 4966 9.201127 GTTTAGAGTTTATTCCGTCAGTAGTTT 57.799 33.333 0.00 0.00 0.00 2.66
3351 4967 8.976986 TTAGAGTTTATTCCGTCAGTAGTTTC 57.023 34.615 0.00 0.00 0.00 2.78
3352 4968 6.396450 AGAGTTTATTCCGTCAGTAGTTTCC 58.604 40.000 0.00 0.00 0.00 3.13
3353 4969 5.166398 AGTTTATTCCGTCAGTAGTTTCCG 58.834 41.667 0.00 0.00 0.00 4.30
3354 4970 2.005971 ATTCCGTCAGTAGTTTCCGC 57.994 50.000 0.00 0.00 0.00 5.54
3355 4971 0.963962 TTCCGTCAGTAGTTTCCGCT 59.036 50.000 0.00 0.00 0.00 5.52
3356 4972 0.963962 TCCGTCAGTAGTTTCCGCTT 59.036 50.000 0.00 0.00 0.00 4.68
3357 4973 1.068474 CCGTCAGTAGTTTCCGCTTG 58.932 55.000 0.00 0.00 0.00 4.01
3358 4974 1.068474 CGTCAGTAGTTTCCGCTTGG 58.932 55.000 0.00 0.00 0.00 3.61
3359 4975 1.604693 CGTCAGTAGTTTCCGCTTGGT 60.605 52.381 0.00 0.00 0.00 3.67
3360 4976 2.352030 CGTCAGTAGTTTCCGCTTGGTA 60.352 50.000 0.00 0.00 0.00 3.25
3361 4977 3.675228 CGTCAGTAGTTTCCGCTTGGTAT 60.675 47.826 0.00 0.00 0.00 2.73
3362 4978 3.864003 GTCAGTAGTTTCCGCTTGGTATC 59.136 47.826 0.00 0.00 0.00 2.24
3363 4979 3.767673 TCAGTAGTTTCCGCTTGGTATCT 59.232 43.478 0.00 0.00 0.00 1.98
3364 4980 3.865745 CAGTAGTTTCCGCTTGGTATCTG 59.134 47.826 0.00 0.00 0.00 2.90
3365 4981 1.739067 AGTTTCCGCTTGGTATCTGC 58.261 50.000 0.00 0.00 0.00 4.26
3366 4982 1.279271 AGTTTCCGCTTGGTATCTGCT 59.721 47.619 0.00 0.00 0.00 4.24
3367 4983 2.500098 AGTTTCCGCTTGGTATCTGCTA 59.500 45.455 0.00 0.00 0.00 3.49
3368 4984 2.866762 GTTTCCGCTTGGTATCTGCTAG 59.133 50.000 0.00 0.00 0.00 3.42
3369 4985 1.776662 TCCGCTTGGTATCTGCTAGT 58.223 50.000 0.00 0.00 0.00 2.57
3370 4986 2.940158 TCCGCTTGGTATCTGCTAGTA 58.060 47.619 0.00 0.00 0.00 1.82
3371 4987 2.885266 TCCGCTTGGTATCTGCTAGTAG 59.115 50.000 0.63 0.63 0.00 2.57
3372 4988 2.608261 CCGCTTGGTATCTGCTAGTAGC 60.608 54.545 15.56 15.56 42.82 3.58
3373 4989 2.667137 GCTTGGTATCTGCTAGTAGCG 58.333 52.381 17.16 11.81 46.26 4.26
3375 4991 0.959553 TGGTATCTGCTAGTAGCGGC 59.040 55.000 23.87 11.82 46.94 6.53
3376 4992 0.244178 GGTATCTGCTAGTAGCGGCC 59.756 60.000 23.87 16.26 46.94 6.13
3377 4993 0.109689 GTATCTGCTAGTAGCGGCCG 60.110 60.000 24.05 24.05 46.94 6.13
3378 4994 0.250597 TATCTGCTAGTAGCGGCCGA 60.251 55.000 33.48 5.65 46.94 5.54
3379 4995 1.107538 ATCTGCTAGTAGCGGCCGAA 61.108 55.000 33.48 13.92 46.94 4.30
3380 4996 1.141019 CTGCTAGTAGCGGCCGAAA 59.859 57.895 33.48 13.46 46.26 3.46
3381 4997 0.872021 CTGCTAGTAGCGGCCGAAAG 60.872 60.000 33.48 17.98 46.26 2.62
3382 4998 2.238437 GCTAGTAGCGGCCGAAAGC 61.238 63.158 33.48 23.57 42.60 3.51
3383 4999 1.437986 CTAGTAGCGGCCGAAAGCT 59.562 57.895 33.48 19.33 46.53 3.74
3392 5008 2.613730 GGCCGAAAGCTGAACTAAAC 57.386 50.000 0.00 0.00 43.05 2.01
3393 5009 2.152016 GGCCGAAAGCTGAACTAAACT 58.848 47.619 0.00 0.00 43.05 2.66
3394 5010 2.095718 GGCCGAAAGCTGAACTAAACTG 60.096 50.000 0.00 0.00 43.05 3.16
3395 5011 2.806244 GCCGAAAGCTGAACTAAACTGA 59.194 45.455 0.00 0.00 38.99 3.41
3396 5012 3.250040 GCCGAAAGCTGAACTAAACTGAA 59.750 43.478 0.00 0.00 38.99 3.02
3397 5013 4.083271 GCCGAAAGCTGAACTAAACTGAAT 60.083 41.667 0.00 0.00 38.99 2.57
3398 5014 5.121768 GCCGAAAGCTGAACTAAACTGAATA 59.878 40.000 0.00 0.00 38.99 1.75
3399 5015 6.673316 GCCGAAAGCTGAACTAAACTGAATAG 60.673 42.308 0.00 0.00 38.99 1.73
3400 5016 6.369065 CCGAAAGCTGAACTAAACTGAATAGT 59.631 38.462 0.00 0.00 39.32 2.12
3401 5017 7.230222 CGAAAGCTGAACTAAACTGAATAGTG 58.770 38.462 0.00 0.00 37.19 2.74
3402 5018 7.116376 CGAAAGCTGAACTAAACTGAATAGTGA 59.884 37.037 0.00 0.00 37.19 3.41
3403 5019 8.677148 AAAGCTGAACTAAACTGAATAGTGAA 57.323 30.769 0.00 0.00 37.19 3.18
3404 5020 8.854614 AAGCTGAACTAAACTGAATAGTGAAT 57.145 30.769 0.00 0.00 37.19 2.57
3405 5021 9.944376 AAGCTGAACTAAACTGAATAGTGAATA 57.056 29.630 0.00 0.00 37.19 1.75
3406 5022 9.372369 AGCTGAACTAAACTGAATAGTGAATAC 57.628 33.333 0.00 0.00 37.19 1.89
3407 5023 8.604890 GCTGAACTAAACTGAATAGTGAATACC 58.395 37.037 0.00 0.00 37.19 2.73
3408 5024 9.653287 CTGAACTAAACTGAATAGTGAATACCA 57.347 33.333 0.00 0.00 37.19 3.25
3428 5044 5.426689 CCATATATGGTGACTGCTATGGT 57.573 43.478 21.85 0.00 43.05 3.55
3429 5045 6.544928 CCATATATGGTGACTGCTATGGTA 57.455 41.667 21.85 0.00 43.05 3.25
3430 5046 7.129457 CCATATATGGTGACTGCTATGGTAT 57.871 40.000 21.85 0.00 43.05 2.73
3431 5047 7.568349 CCATATATGGTGACTGCTATGGTATT 58.432 38.462 21.85 0.00 43.05 1.89
3432 5048 8.049117 CCATATATGGTGACTGCTATGGTATTT 58.951 37.037 21.85 0.00 43.05 1.40
3433 5049 9.102757 CATATATGGTGACTGCTATGGTATTTC 57.897 37.037 4.68 0.00 0.00 2.17
3434 5050 3.792401 TGGTGACTGCTATGGTATTTCG 58.208 45.455 0.00 0.00 0.00 3.46
3435 5051 3.196901 TGGTGACTGCTATGGTATTTCGT 59.803 43.478 0.00 0.00 0.00 3.85
3436 5052 3.555956 GGTGACTGCTATGGTATTTCGTG 59.444 47.826 0.00 0.00 0.00 4.35
3437 5053 3.555956 GTGACTGCTATGGTATTTCGTGG 59.444 47.826 0.00 0.00 0.00 4.94
3438 5054 3.449377 TGACTGCTATGGTATTTCGTGGA 59.551 43.478 0.00 0.00 0.00 4.02
3439 5055 4.100963 TGACTGCTATGGTATTTCGTGGAT 59.899 41.667 0.00 0.00 0.00 3.41
3440 5056 5.036117 ACTGCTATGGTATTTCGTGGATT 57.964 39.130 0.00 0.00 0.00 3.01
3441 5057 5.057149 ACTGCTATGGTATTTCGTGGATTC 58.943 41.667 0.00 0.00 0.00 2.52
3442 5058 5.163301 ACTGCTATGGTATTTCGTGGATTCT 60.163 40.000 0.00 0.00 0.00 2.40
3443 5059 5.297547 TGCTATGGTATTTCGTGGATTCTC 58.702 41.667 0.00 0.00 0.00 2.87
3444 5060 4.691216 GCTATGGTATTTCGTGGATTCTCC 59.309 45.833 0.00 0.00 36.96 3.71
3445 5061 3.173668 TGGTATTTCGTGGATTCTCCG 57.826 47.619 0.00 0.00 40.17 4.63
3446 5062 2.761767 TGGTATTTCGTGGATTCTCCGA 59.238 45.455 0.00 0.00 40.17 4.55
3447 5063 3.386726 TGGTATTTCGTGGATTCTCCGAT 59.613 43.478 0.00 0.00 40.17 4.18
3448 5064 3.741344 GGTATTTCGTGGATTCTCCGATG 59.259 47.826 0.00 0.00 40.17 3.84
3449 5065 3.819564 ATTTCGTGGATTCTCCGATGA 57.180 42.857 0.00 0.00 40.17 2.92
3450 5066 2.579207 TTCGTGGATTCTCCGATGAC 57.421 50.000 0.00 0.00 40.17 3.06
3451 5067 1.470051 TCGTGGATTCTCCGATGACA 58.530 50.000 0.00 0.00 40.17 3.58
3452 5068 1.134367 TCGTGGATTCTCCGATGACAC 59.866 52.381 0.00 0.00 40.17 3.67
3453 5069 1.560923 GTGGATTCTCCGATGACACG 58.439 55.000 0.00 0.00 40.17 4.49
3476 5092 1.424403 TTGCACCGTCATAGTCGTTG 58.576 50.000 0.00 0.00 0.00 4.10
3482 5098 4.417506 CACCGTCATAGTCGTTGTGATTA 58.582 43.478 0.00 0.00 0.00 1.75
3483 5099 4.860352 CACCGTCATAGTCGTTGTGATTAA 59.140 41.667 0.00 0.00 0.00 1.40
3491 5107 9.820229 TCATAGTCGTTGTGATTAAATTGTTTC 57.180 29.630 0.00 0.00 0.00 2.78
3493 5109 7.033530 AGTCGTTGTGATTAAATTGTTTCCA 57.966 32.000 0.00 0.00 0.00 3.53
3494 5110 7.657336 AGTCGTTGTGATTAAATTGTTTCCAT 58.343 30.769 0.00 0.00 0.00 3.41
3495 5111 7.807907 AGTCGTTGTGATTAAATTGTTTCCATC 59.192 33.333 0.00 0.00 0.00 3.51
3496 5112 7.807907 GTCGTTGTGATTAAATTGTTTCCATCT 59.192 33.333 0.00 0.00 0.00 2.90
3497 5113 7.807433 TCGTTGTGATTAAATTGTTTCCATCTG 59.193 33.333 0.00 0.00 0.00 2.90
3499 5115 9.474920 GTTGTGATTAAATTGTTTCCATCTGAA 57.525 29.630 0.00 0.00 0.00 3.02
3501 5117 8.306038 TGTGATTAAATTGTTTCCATCTGAAGG 58.694 33.333 0.00 0.00 33.63 3.46
3502 5118 7.761249 GTGATTAAATTGTTTCCATCTGAAGGG 59.239 37.037 0.00 0.00 33.63 3.95
3504 5120 3.833559 ATTGTTTCCATCTGAAGGGGT 57.166 42.857 0.00 0.00 33.63 4.95
3522 5145 3.244596 GGGGTTCTAGGATTACCATCTGC 60.245 52.174 0.00 0.00 38.94 4.26
3525 5148 5.059833 GGTTCTAGGATTACCATCTGCAAG 58.940 45.833 0.00 0.00 38.94 4.01
3566 5189 0.857935 CTCCGATGAAGCTCGATTGC 59.142 55.000 0.00 0.00 41.12 3.56
3584 5207 1.542472 TGCAATGCACATTCCTGACTG 59.458 47.619 2.72 0.00 31.71 3.51
3592 5215 5.368145 TGCACATTCCTGACTGTTATATCC 58.632 41.667 0.00 0.00 0.00 2.59
3630 5253 5.012664 TCAGGGAGCAGTACAATTTTCTACA 59.987 40.000 0.00 0.00 0.00 2.74
3635 5258 4.094887 AGCAGTACAATTTTCTACATGGCG 59.905 41.667 0.00 0.00 0.00 5.69
3646 5269 3.609853 TCTACATGGCGCTGAGAAAATT 58.390 40.909 7.64 0.00 0.00 1.82
3659 5282 7.866393 GCGCTGAGAAAATTAGTAGGTATCTTA 59.134 37.037 0.00 0.00 0.00 2.10
3660 5283 9.182933 CGCTGAGAAAATTAGTAGGTATCTTAC 57.817 37.037 0.00 0.00 0.00 2.34
3676 5299 7.971455 GGTATCTTACCTGTTTCATGTTACAC 58.029 38.462 0.00 0.00 45.52 2.90
3677 5300 7.822822 GGTATCTTACCTGTTTCATGTTACACT 59.177 37.037 0.00 0.00 45.52 3.55
3712 5335 3.006940 TCATTATTTCGAACTTGCGGCT 58.993 40.909 0.00 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 2.412089 GCGCACTAGGACAAAAGTACAG 59.588 50.000 0.30 0.00 0.00 2.74
59 61 2.074547 TCGTGAGGAGTTTTAAGGCG 57.925 50.000 0.00 0.00 0.00 5.52
60 62 3.127030 CCATTCGTGAGGAGTTTTAAGGC 59.873 47.826 0.00 0.00 0.00 4.35
97 99 1.075542 CCGCACGCATCTTTTGTCTA 58.924 50.000 0.00 0.00 0.00 2.59
100 102 1.574428 GTCCGCACGCATCTTTTGT 59.426 52.632 0.00 0.00 0.00 2.83
132 134 6.533819 TGTATCGTAGACAAAGGTTTTGTG 57.466 37.500 11.52 0.00 42.51 3.33
257 1738 3.000727 GGTGTGGTAATCCAAAGACTCG 58.999 50.000 0.00 0.00 46.15 4.18
272 1753 7.333423 TGAATAGTCGAATAGAAAAAGGTGTGG 59.667 37.037 0.00 0.00 0.00 4.17
290 1784 6.142817 ACTCGTTTTGCATGTTTGAATAGTC 58.857 36.000 0.00 0.00 0.00 2.59
365 1859 0.959553 ACCACGACATCGACTGAACT 59.040 50.000 8.54 0.00 43.02 3.01
407 1901 4.931601 GCAGTCAGTCATGTGATTCTTGTA 59.068 41.667 0.00 0.00 0.00 2.41
426 1920 3.435601 CCCCTTGCTAGGAATAATGCAGT 60.436 47.826 16.43 0.00 45.05 4.40
429 1923 1.889170 GCCCCTTGCTAGGAATAATGC 59.111 52.381 16.43 4.69 45.05 3.56
469 1963 3.546009 GCCTGTGTCGGCCCTATA 58.454 61.111 0.00 0.00 44.41 1.31
482 1976 3.052082 CCACACTTGCTCCGCCTG 61.052 66.667 0.00 0.00 0.00 4.85
488 1982 2.282462 CCCCACCCACACTTGCTC 60.282 66.667 0.00 0.00 0.00 4.26
528 2022 1.361197 CCATCCCTTAACACCCCCTTT 59.639 52.381 0.00 0.00 0.00 3.11
552 2048 0.604243 AACGCCGCATTGTACCTTCA 60.604 50.000 0.00 0.00 0.00 3.02
569 2065 3.712881 GCAGTGGTCGTCGCCAAC 61.713 66.667 9.50 0.00 40.68 3.77
617 2113 1.473257 CCATGTCGTTGATCCGTCCAT 60.473 52.381 0.00 0.00 0.00 3.41
618 2114 0.108377 CCATGTCGTTGATCCGTCCA 60.108 55.000 0.00 0.00 0.00 4.02
619 2115 0.108329 ACCATGTCGTTGATCCGTCC 60.108 55.000 0.00 0.00 0.00 4.79
631 2127 4.384846 CGTTGTAGACAAGTGTACCATGTC 59.615 45.833 12.39 12.39 42.91 3.06
634 2130 3.322828 ACCGTTGTAGACAAGTGTACCAT 59.677 43.478 5.24 0.00 36.39 3.55
639 2135 2.797087 CGTCACCGTTGTAGACAAGTGT 60.797 50.000 12.06 3.74 36.39 3.55
645 2141 1.080298 CCCCGTCACCGTTGTAGAC 60.080 63.158 0.00 0.00 0.00 2.59
658 2154 2.439409 CGGTAAATTTTTCTCCCCCGT 58.561 47.619 0.00 0.00 0.00 5.28
699 2195 5.183904 ACAAAAAGGAGTGCATATCTTCCAC 59.816 40.000 0.00 0.00 0.00 4.02
809 2314 4.873827 GGAACACTATTCACAGCCGATTTA 59.126 41.667 0.00 0.00 0.00 1.40
810 2315 3.689649 GGAACACTATTCACAGCCGATTT 59.310 43.478 0.00 0.00 0.00 2.17
811 2316 3.270877 GGAACACTATTCACAGCCGATT 58.729 45.455 0.00 0.00 0.00 3.34
812 2317 2.236146 TGGAACACTATTCACAGCCGAT 59.764 45.455 0.00 0.00 0.00 4.18
880 2390 3.947834 CCAGTTACTAGCAGAAAATGGGG 59.052 47.826 6.39 0.00 35.32 4.96
1148 2662 3.148279 ACCACCCGAGATCGAGGC 61.148 66.667 3.31 0.00 43.02 4.70
1149 2663 2.808315 CACCACCCGAGATCGAGG 59.192 66.667 3.31 6.05 43.02 4.63
1150 2664 2.105128 GCACCACCCGAGATCGAG 59.895 66.667 3.31 0.00 43.02 4.04
1151 2665 2.362503 AGCACCACCCGAGATCGA 60.363 61.111 3.31 0.00 43.02 3.59
1152 2666 2.021068 ATCAGCACCACCCGAGATCG 62.021 60.000 0.00 0.00 39.44 3.69
1467 2981 3.804193 GGCTGTAACTGCGGCTGC 61.804 66.667 11.65 11.65 40.42 5.25
1510 3024 2.362120 TTCCCGTCCGTCTCCTCC 60.362 66.667 0.00 0.00 0.00 4.30
1678 3192 4.879295 TGGAATGGAAATGGGTATCAGT 57.121 40.909 0.00 0.00 0.00 3.41
1679 3193 4.342092 GGTTGGAATGGAAATGGGTATCAG 59.658 45.833 0.00 0.00 0.00 2.90
1680 3194 4.016666 AGGTTGGAATGGAAATGGGTATCA 60.017 41.667 0.00 0.00 0.00 2.15
1681 3195 4.546674 AGGTTGGAATGGAAATGGGTATC 58.453 43.478 0.00 0.00 0.00 2.24
1682 3196 4.625225 AGGTTGGAATGGAAATGGGTAT 57.375 40.909 0.00 0.00 0.00 2.73
1683 3197 4.292571 TGTAGGTTGGAATGGAAATGGGTA 59.707 41.667 0.00 0.00 0.00 3.69
1707 3222 1.002142 TCGACAGATGACGAAACGTGT 60.002 47.619 4.98 0.00 41.37 4.49
1734 3249 1.142778 GAGACACGGCGAGCTGAATC 61.143 60.000 16.62 7.38 0.00 2.52
1735 3250 1.153745 GAGACACGGCGAGCTGAAT 60.154 57.895 16.62 0.00 0.00 2.57
1736 3251 2.258591 GAGACACGGCGAGCTGAA 59.741 61.111 16.62 0.00 0.00 3.02
1737 3252 2.673341 AGAGACACGGCGAGCTGA 60.673 61.111 16.62 0.00 0.00 4.26
1738 3253 2.276863 ATCAGAGACACGGCGAGCTG 62.277 60.000 16.62 12.80 0.00 4.24
1739 3254 0.748367 TATCAGAGACACGGCGAGCT 60.748 55.000 16.62 7.50 0.00 4.09
1740 3255 0.100682 TTATCAGAGACACGGCGAGC 59.899 55.000 16.62 1.82 0.00 5.03
1741 3256 1.402259 AGTTATCAGAGACACGGCGAG 59.598 52.381 16.62 8.85 0.00 5.03
1742 3257 1.400846 GAGTTATCAGAGACACGGCGA 59.599 52.381 16.62 0.00 0.00 5.54
1766 3281 1.601166 CACGGATGCCATCACATCAT 58.399 50.000 7.06 0.00 46.81 2.45
1998 3513 4.785453 GGGCAGAAGCAGGGGTCG 62.785 72.222 0.00 0.00 44.61 4.79
2214 3729 1.233285 GGCGGATGCAGATCATGGAC 61.233 60.000 0.00 0.00 45.35 4.02
2241 3756 0.541998 TGAACTCCTCCTCGAAGGCA 60.542 55.000 0.00 0.00 36.29 4.75
2397 3912 4.284123 GCACAGCCATTCTCGACA 57.716 55.556 0.00 0.00 0.00 4.35
2510 4025 8.980832 ACATTAATCCTATCCTAGAACCAGAT 57.019 34.615 0.00 0.00 0.00 2.90
2543 4058 3.491104 CCCGGCTATGAACAGAACTCTAC 60.491 52.174 0.00 0.00 0.00 2.59
2564 4079 0.733150 GGATGCCGCTCAAGTTTACC 59.267 55.000 0.00 0.00 0.00 2.85
2702 4219 2.961062 ACCAAATTCAGCATATCCCAGC 59.039 45.455 0.00 0.00 0.00 4.85
2703 4220 3.319972 CCACCAAATTCAGCATATCCCAG 59.680 47.826 0.00 0.00 0.00 4.45
2722 4239 4.331443 CACCAAAACAAAAAGGCTTACCAC 59.669 41.667 0.00 0.00 39.06 4.16
2731 4248 5.353678 TCCAGAAATGCACCAAAACAAAAAG 59.646 36.000 0.00 0.00 0.00 2.27
2732 4249 5.123027 GTCCAGAAATGCACCAAAACAAAAA 59.877 36.000 0.00 0.00 0.00 1.94
2836 4353 7.330946 CAGAATAAACTAATGAACTCACGACCA 59.669 37.037 0.00 0.00 0.00 4.02
2862 4379 2.869192 GCACCATCTGAAAGCTACTAGC 59.131 50.000 0.00 0.00 42.84 3.42
2870 4390 1.201647 CCAGCAAGCACCATCTGAAAG 59.798 52.381 0.00 0.00 0.00 2.62
2884 4404 4.202567 ACCTGGAAGAATAAACTCCAGCAA 60.203 41.667 11.14 0.00 44.73 3.91
2903 4423 7.172190 CACCAGATATGCTATTCAGTTTACCTG 59.828 40.741 0.00 0.00 42.97 4.00
2918 4456 2.357009 CCAAAGCAGTCACCAGATATGC 59.643 50.000 0.00 0.00 38.74 3.14
2936 4474 1.342496 TGCAAATCCACGAAATGCCAA 59.658 42.857 0.00 0.00 36.20 4.52
2939 4477 1.336702 TGGTGCAAATCCACGAAATGC 60.337 47.619 0.00 0.00 36.59 3.56
2940 4478 2.721274 TGGTGCAAATCCACGAAATG 57.279 45.000 0.00 0.00 36.59 2.32
2941 4479 2.824936 TGATGGTGCAAATCCACGAAAT 59.175 40.909 7.90 0.00 37.81 2.17
2943 4481 1.902938 TGATGGTGCAAATCCACGAA 58.097 45.000 7.90 0.00 37.81 3.85
2944 4482 2.016318 GATGATGGTGCAAATCCACGA 58.984 47.619 7.90 0.00 37.81 4.35
2945 4483 1.744522 TGATGATGGTGCAAATCCACG 59.255 47.619 7.90 0.00 37.81 4.94
2946 4484 4.395959 AATGATGATGGTGCAAATCCAC 57.604 40.909 7.90 3.76 37.81 4.02
2947 4485 5.834204 TCATAATGATGATGGTGCAAATCCA 59.166 36.000 7.90 2.80 37.15 3.41
2966 4504 9.585099 GGAACAATGCAATCAAAACTATCATAA 57.415 29.630 0.00 0.00 0.00 1.90
2968 4506 7.613585 TGGAACAATGCAATCAAAACTATCAT 58.386 30.769 0.00 0.00 31.92 2.45
2980 4518 9.445419 GAAGCTCTTCAGATGGAACAATGCAAT 62.445 40.741 4.85 0.00 39.99 3.56
2981 4519 8.229028 GAAGCTCTTCAGATGGAACAATGCAA 62.229 42.308 4.85 0.00 39.99 4.08
2982 4520 6.830193 GAAGCTCTTCAGATGGAACAATGCA 61.830 44.000 4.85 0.00 39.99 3.96
2983 4521 4.438472 GAAGCTCTTCAGATGGAACAATGC 60.438 45.833 4.85 0.00 39.99 3.56
2984 4522 4.942483 AGAAGCTCTTCAGATGGAACAATG 59.058 41.667 11.69 0.00 41.79 2.82
2987 4525 4.161189 CCTAGAAGCTCTTCAGATGGAACA 59.839 45.833 11.69 0.00 42.40 3.18
2989 4527 4.614475 TCCTAGAAGCTCTTCAGATGGAA 58.386 43.478 11.69 0.00 41.84 3.53
2990 4528 4.256983 TCCTAGAAGCTCTTCAGATGGA 57.743 45.455 11.69 9.53 41.84 3.41
2991 4529 5.549742 AATCCTAGAAGCTCTTCAGATGG 57.450 43.478 11.69 7.75 41.84 3.51
2992 4530 7.725251 AGTAAATCCTAGAAGCTCTTCAGATG 58.275 38.462 11.69 0.00 41.84 2.90
2993 4531 7.912778 AGTAAATCCTAGAAGCTCTTCAGAT 57.087 36.000 11.69 7.82 41.84 2.90
2994 4532 9.073475 GATAGTAAATCCTAGAAGCTCTTCAGA 57.927 37.037 11.69 6.08 41.84 3.27
2995 4533 9.077885 AGATAGTAAATCCTAGAAGCTCTTCAG 57.922 37.037 11.69 7.09 41.84 3.02
2996 4534 8.855110 CAGATAGTAAATCCTAGAAGCTCTTCA 58.145 37.037 11.69 0.00 41.84 3.02
2997 4535 7.812669 GCAGATAGTAAATCCTAGAAGCTCTTC 59.187 40.741 1.52 1.52 39.78 2.87
2998 4536 7.288852 TGCAGATAGTAAATCCTAGAAGCTCTT 59.711 37.037 0.00 0.00 0.00 2.85
2999 4537 6.780031 TGCAGATAGTAAATCCTAGAAGCTCT 59.220 38.462 0.00 0.00 0.00 4.09
3000 4538 6.987386 TGCAGATAGTAAATCCTAGAAGCTC 58.013 40.000 0.00 0.00 0.00 4.09
3001 4539 6.985653 TGCAGATAGTAAATCCTAGAAGCT 57.014 37.500 0.00 0.00 0.00 3.74
3002 4540 9.883142 AATATGCAGATAGTAAATCCTAGAAGC 57.117 33.333 0.00 0.00 0.00 3.86
3008 4546 9.632638 ACAAACAATATGCAGATAGTAAATCCT 57.367 29.630 0.00 0.00 0.00 3.24
3019 4557 9.462174 CAGAAAAACTAACAAACAATATGCAGA 57.538 29.630 0.00 0.00 0.00 4.26
3020 4558 8.216453 GCAGAAAAACTAACAAACAATATGCAG 58.784 33.333 0.00 0.00 0.00 4.41
3021 4559 7.925483 AGCAGAAAAACTAACAAACAATATGCA 59.075 29.630 0.00 0.00 0.00 3.96
3022 4560 8.298030 AGCAGAAAAACTAACAAACAATATGC 57.702 30.769 0.00 0.00 0.00 3.14
3023 4561 8.915654 GGAGCAGAAAAACTAACAAACAATATG 58.084 33.333 0.00 0.00 0.00 1.78
3024 4562 8.088365 GGGAGCAGAAAAACTAACAAACAATAT 58.912 33.333 0.00 0.00 0.00 1.28
3025 4563 7.068839 TGGGAGCAGAAAAACTAACAAACAATA 59.931 33.333 0.00 0.00 0.00 1.90
3032 4570 3.826157 CCATGGGAGCAGAAAAACTAACA 59.174 43.478 2.85 0.00 0.00 2.41
3033 4571 4.079253 TCCATGGGAGCAGAAAAACTAAC 58.921 43.478 13.02 0.00 0.00 2.34
3037 4575 2.893489 AGTTCCATGGGAGCAGAAAAAC 59.107 45.455 13.02 5.48 35.33 2.43
3040 4578 1.704628 TGAGTTCCATGGGAGCAGAAA 59.295 47.619 13.02 0.00 35.33 2.52
3046 4584 0.325933 TGCAGTGAGTTCCATGGGAG 59.674 55.000 13.02 0.00 31.21 4.30
3048 4586 0.250858 TGTGCAGTGAGTTCCATGGG 60.251 55.000 13.02 0.00 0.00 4.00
3049 4587 1.830279 ATGTGCAGTGAGTTCCATGG 58.170 50.000 4.97 4.97 0.00 3.66
3052 4590 1.977854 ACCTATGTGCAGTGAGTTCCA 59.022 47.619 0.00 0.00 0.00 3.53
3053 4591 2.028112 TCACCTATGTGCAGTGAGTTCC 60.028 50.000 1.86 0.00 42.46 3.62
3054 4592 2.996621 GTCACCTATGTGCAGTGAGTTC 59.003 50.000 6.01 0.00 40.98 3.01
3055 4593 2.634940 AGTCACCTATGTGCAGTGAGTT 59.365 45.455 6.01 0.00 40.43 3.01
3056 4594 2.251818 AGTCACCTATGTGCAGTGAGT 58.748 47.619 6.01 6.74 40.98 3.41
3057 4595 2.998670 CAAGTCACCTATGTGCAGTGAG 59.001 50.000 6.01 0.00 40.98 3.51
3058 4596 2.368548 ACAAGTCACCTATGTGCAGTGA 59.631 45.455 1.86 1.86 42.46 3.41
3060 4598 3.578716 ACTACAAGTCACCTATGTGCAGT 59.421 43.478 0.00 0.00 42.46 4.40
3061 4599 4.193826 ACTACAAGTCACCTATGTGCAG 57.806 45.455 0.00 0.00 42.46 4.41
3063 4601 5.523916 CCAATACTACAAGTCACCTATGTGC 59.476 44.000 0.00 0.00 42.46 4.57
3064 4602 5.523916 GCCAATACTACAAGTCACCTATGTG 59.476 44.000 0.00 0.00 44.18 3.21
3065 4603 5.671493 GCCAATACTACAAGTCACCTATGT 58.329 41.667 0.00 0.00 0.00 2.29
3066 4604 4.745125 CGCCAATACTACAAGTCACCTATG 59.255 45.833 0.00 0.00 0.00 2.23
3067 4605 4.647853 TCGCCAATACTACAAGTCACCTAT 59.352 41.667 0.00 0.00 0.00 2.57
3069 4607 2.829720 TCGCCAATACTACAAGTCACCT 59.170 45.455 0.00 0.00 0.00 4.00
3070 4608 2.928116 GTCGCCAATACTACAAGTCACC 59.072 50.000 0.00 0.00 0.00 4.02
3071 4609 3.846360 AGTCGCCAATACTACAAGTCAC 58.154 45.455 0.00 0.00 0.00 3.67
3072 4610 4.530710 AAGTCGCCAATACTACAAGTCA 57.469 40.909 0.00 0.00 0.00 3.41
3075 4613 5.607119 AACAAAGTCGCCAATACTACAAG 57.393 39.130 0.00 0.00 0.00 3.16
3077 4615 5.786311 ACTAACAAAGTCGCCAATACTACA 58.214 37.500 0.00 0.00 30.33 2.74
3078 4616 6.716898 AACTAACAAAGTCGCCAATACTAC 57.283 37.500 0.00 0.00 37.50 2.73
3101 4701 3.278574 CCTGCCGTGAGATCCATAAAAA 58.721 45.455 0.00 0.00 0.00 1.94
3105 4705 0.752658 CACCTGCCGTGAGATCCATA 59.247 55.000 0.00 0.00 46.20 2.74
3106 4706 0.977627 TCACCTGCCGTGAGATCCAT 60.978 55.000 0.00 0.00 46.80 3.41
3108 4708 3.298958 TCACCTGCCGTGAGATCC 58.701 61.111 0.00 0.00 46.80 3.36
3114 4714 1.300971 CTTCCATGTCACCTGCCGTG 61.301 60.000 0.00 0.00 44.50 4.94
3115 4715 1.003355 CTTCCATGTCACCTGCCGT 60.003 57.895 0.00 0.00 0.00 5.68
3116 4716 2.401766 GCTTCCATGTCACCTGCCG 61.402 63.158 0.00 0.00 0.00 5.69
3117 4717 0.682209 ATGCTTCCATGTCACCTGCC 60.682 55.000 0.00 0.00 0.00 4.85
3118 4718 0.454600 CATGCTTCCATGTCACCTGC 59.545 55.000 0.00 0.00 43.07 4.85
3119 4719 1.100510 CCATGCTTCCATGTCACCTG 58.899 55.000 3.34 0.00 45.90 4.00
3120 4720 0.033796 CCCATGCTTCCATGTCACCT 60.034 55.000 3.34 0.00 45.90 4.00
3121 4721 0.323725 ACCCATGCTTCCATGTCACC 60.324 55.000 3.34 0.00 45.90 4.02
3126 4732 1.679680 CAAGCTACCCATGCTTCCATG 59.320 52.381 0.00 0.00 46.39 3.66
3182 4797 3.136443 CAGCATATCCCAGTTTACCCTCA 59.864 47.826 0.00 0.00 0.00 3.86
3231 4847 0.792640 CGTCACATCCAGACAAGCAC 59.207 55.000 0.00 0.00 35.77 4.40
3234 4850 3.516981 AGATCGTCACATCCAGACAAG 57.483 47.619 0.00 0.00 35.77 3.16
3236 4852 2.825532 TCAAGATCGTCACATCCAGACA 59.174 45.455 0.00 0.00 35.77 3.41
3237 4853 3.510388 TCAAGATCGTCACATCCAGAC 57.490 47.619 0.00 0.00 0.00 3.51
3238 4854 3.448660 ACATCAAGATCGTCACATCCAGA 59.551 43.478 0.00 0.00 0.00 3.86
3239 4855 3.790091 ACATCAAGATCGTCACATCCAG 58.210 45.455 0.00 0.00 0.00 3.86
3240 4856 3.893326 ACATCAAGATCGTCACATCCA 57.107 42.857 0.00 0.00 0.00 3.41
3241 4857 4.183865 TCAACATCAAGATCGTCACATCC 58.816 43.478 0.00 0.00 0.00 3.51
3242 4858 5.784750 TTCAACATCAAGATCGTCACATC 57.215 39.130 0.00 0.00 0.00 3.06
3243 4859 6.403964 CCATTTCAACATCAAGATCGTCACAT 60.404 38.462 0.00 0.00 0.00 3.21
3244 4860 5.106594 CCATTTCAACATCAAGATCGTCACA 60.107 40.000 0.00 0.00 0.00 3.58
3245 4861 5.327091 CCATTTCAACATCAAGATCGTCAC 58.673 41.667 0.00 0.00 0.00 3.67
3246 4862 4.395854 CCCATTTCAACATCAAGATCGTCA 59.604 41.667 0.00 0.00 0.00 4.35
3247 4863 4.396166 ACCCATTTCAACATCAAGATCGTC 59.604 41.667 0.00 0.00 0.00 4.20
3248 4864 4.335416 ACCCATTTCAACATCAAGATCGT 58.665 39.130 0.00 0.00 0.00 3.73
3249 4865 4.970662 ACCCATTTCAACATCAAGATCG 57.029 40.909 0.00 0.00 0.00 3.69
3250 4866 6.564328 GGTTACCCATTTCAACATCAAGATC 58.436 40.000 0.00 0.00 0.00 2.75
3251 4867 5.125417 CGGTTACCCATTTCAACATCAAGAT 59.875 40.000 0.00 0.00 0.00 2.40
3252 4868 4.457603 CGGTTACCCATTTCAACATCAAGA 59.542 41.667 0.00 0.00 0.00 3.02
3253 4869 4.732784 CGGTTACCCATTTCAACATCAAG 58.267 43.478 0.00 0.00 0.00 3.02
3254 4870 3.057174 GCGGTTACCCATTTCAACATCAA 60.057 43.478 0.00 0.00 0.00 2.57
3255 4871 2.490115 GCGGTTACCCATTTCAACATCA 59.510 45.455 0.00 0.00 0.00 3.07
3256 4872 2.752903 AGCGGTTACCCATTTCAACATC 59.247 45.455 0.00 0.00 0.00 3.06
3257 4873 2.491693 CAGCGGTTACCCATTTCAACAT 59.508 45.455 0.00 0.00 0.00 2.71
3258 4874 1.883275 CAGCGGTTACCCATTTCAACA 59.117 47.619 0.00 0.00 0.00 3.33
3259 4875 1.883926 ACAGCGGTTACCCATTTCAAC 59.116 47.619 0.00 0.00 0.00 3.18
3260 4876 2.279935 ACAGCGGTTACCCATTTCAA 57.720 45.000 0.00 0.00 0.00 2.69
3261 4877 2.279935 AACAGCGGTTACCCATTTCA 57.720 45.000 0.00 0.00 34.87 2.69
3262 4878 2.817844 AGAAACAGCGGTTACCCATTTC 59.182 45.455 1.70 1.46 35.82 2.17
3263 4879 2.871453 AGAAACAGCGGTTACCCATTT 58.129 42.857 1.70 0.00 35.82 2.32
3264 4880 2.579410 AGAAACAGCGGTTACCCATT 57.421 45.000 1.70 0.00 35.82 3.16
3265 4881 2.579410 AAGAAACAGCGGTTACCCAT 57.421 45.000 1.70 0.00 35.82 4.00
3266 4882 2.223745 GAAAGAAACAGCGGTTACCCA 58.776 47.619 1.70 0.00 35.82 4.51
3267 4883 1.196127 CGAAAGAAACAGCGGTTACCC 59.804 52.381 1.70 0.00 35.82 3.69
3268 4884 1.196127 CCGAAAGAAACAGCGGTTACC 59.804 52.381 1.70 0.00 38.99 2.85
3269 4885 2.589338 CCGAAAGAAACAGCGGTTAC 57.411 50.000 1.70 0.00 38.99 2.50
3274 4890 1.156736 ATCCACCGAAAGAAACAGCG 58.843 50.000 0.00 0.00 0.00 5.18
3275 4891 2.922335 GCAATCCACCGAAAGAAACAGC 60.922 50.000 0.00 0.00 0.00 4.40
3276 4892 2.351738 GGCAATCCACCGAAAGAAACAG 60.352 50.000 0.00 0.00 0.00 3.16
3277 4893 1.611491 GGCAATCCACCGAAAGAAACA 59.389 47.619 0.00 0.00 0.00 2.83
3278 4894 1.886542 AGGCAATCCACCGAAAGAAAC 59.113 47.619 0.00 0.00 33.74 2.78
3279 4895 2.286365 AGGCAATCCACCGAAAGAAA 57.714 45.000 0.00 0.00 33.74 2.52
3280 4896 2.569853 TCTAGGCAATCCACCGAAAGAA 59.430 45.455 0.00 0.00 33.74 2.52
3281 4897 2.184533 TCTAGGCAATCCACCGAAAGA 58.815 47.619 0.00 0.00 33.74 2.52
3282 4898 2.691409 TCTAGGCAATCCACCGAAAG 57.309 50.000 0.00 0.00 33.74 2.62
3283 4899 2.917933 CATCTAGGCAATCCACCGAAA 58.082 47.619 0.00 0.00 33.74 3.46
3284 4900 1.475034 GCATCTAGGCAATCCACCGAA 60.475 52.381 0.00 0.00 33.74 4.30
3285 4901 0.106708 GCATCTAGGCAATCCACCGA 59.893 55.000 0.00 0.00 33.74 4.69
3286 4902 0.107456 AGCATCTAGGCAATCCACCG 59.893 55.000 0.00 0.00 35.83 4.94
3287 4903 1.602311 CAGCATCTAGGCAATCCACC 58.398 55.000 0.00 0.00 35.83 4.61
3288 4904 0.950116 GCAGCATCTAGGCAATCCAC 59.050 55.000 0.00 0.00 35.83 4.02
3289 4905 0.841961 AGCAGCATCTAGGCAATCCA 59.158 50.000 0.00 0.00 35.83 3.41
3290 4906 1.236628 CAGCAGCATCTAGGCAATCC 58.763 55.000 0.00 0.00 35.83 3.01
3291 4907 1.872313 GACAGCAGCATCTAGGCAATC 59.128 52.381 0.00 0.00 35.83 2.67
3292 4908 1.489649 AGACAGCAGCATCTAGGCAAT 59.510 47.619 0.00 0.00 35.83 3.56
3293 4909 0.907486 AGACAGCAGCATCTAGGCAA 59.093 50.000 0.00 0.00 35.83 4.52
3294 4910 1.410517 GTAGACAGCAGCATCTAGGCA 59.589 52.381 6.65 0.00 35.83 4.75
3295 4911 1.270041 GGTAGACAGCAGCATCTAGGC 60.270 57.143 6.65 0.00 0.00 3.93
3296 4912 1.000827 CGGTAGACAGCAGCATCTAGG 60.001 57.143 6.65 0.34 0.00 3.02
3297 4913 1.601663 GCGGTAGACAGCAGCATCTAG 60.602 57.143 6.65 0.00 37.03 2.43
3298 4914 0.385751 GCGGTAGACAGCAGCATCTA 59.614 55.000 0.00 0.00 37.03 1.98
3299 4915 1.142748 GCGGTAGACAGCAGCATCT 59.857 57.895 0.00 0.00 37.03 2.90
3300 4916 0.460987 AAGCGGTAGACAGCAGCATC 60.461 55.000 7.53 0.00 39.54 3.91
3301 4917 0.742281 CAAGCGGTAGACAGCAGCAT 60.742 55.000 7.53 0.00 39.54 3.79
3302 4918 1.374631 CAAGCGGTAGACAGCAGCA 60.375 57.895 7.53 0.00 39.54 4.41
3303 4919 2.744768 GCAAGCGGTAGACAGCAGC 61.745 63.158 7.53 6.96 39.54 5.25
3304 4920 0.950555 TTGCAAGCGGTAGACAGCAG 60.951 55.000 7.53 0.95 39.54 4.24
3305 4921 0.950555 CTTGCAAGCGGTAGACAGCA 60.951 55.000 14.65 0.00 39.54 4.41
3306 4922 0.951040 ACTTGCAAGCGGTAGACAGC 60.951 55.000 26.27 0.00 37.32 4.40
3307 4923 1.512926 AACTTGCAAGCGGTAGACAG 58.487 50.000 26.27 0.00 0.00 3.51
3308 4924 1.961793 AAACTTGCAAGCGGTAGACA 58.038 45.000 26.27 0.00 0.00 3.41
3309 4925 3.323243 TCTAAACTTGCAAGCGGTAGAC 58.677 45.455 26.27 0.00 0.00 2.59
3310 4926 3.006537 ACTCTAAACTTGCAAGCGGTAGA 59.993 43.478 26.27 24.14 0.00 2.59
3311 4927 3.326747 ACTCTAAACTTGCAAGCGGTAG 58.673 45.455 26.27 21.72 0.00 3.18
3312 4928 3.396260 ACTCTAAACTTGCAAGCGGTA 57.604 42.857 26.27 14.07 0.00 4.02
3313 4929 2.256117 ACTCTAAACTTGCAAGCGGT 57.744 45.000 26.27 13.67 0.00 5.68
3314 4930 3.626028 AAACTCTAAACTTGCAAGCGG 57.374 42.857 26.27 13.24 0.00 5.52
3315 4931 5.795441 GGAATAAACTCTAAACTTGCAAGCG 59.205 40.000 26.27 12.16 0.00 4.68
3316 4932 5.795441 CGGAATAAACTCTAAACTTGCAAGC 59.205 40.000 26.27 4.47 0.00 4.01
3317 4933 6.899114 ACGGAATAAACTCTAAACTTGCAAG 58.101 36.000 24.84 24.84 0.00 4.01
3318 4934 6.483974 TGACGGAATAAACTCTAAACTTGCAA 59.516 34.615 0.00 0.00 0.00 4.08
3319 4935 5.992829 TGACGGAATAAACTCTAAACTTGCA 59.007 36.000 0.00 0.00 0.00 4.08
3320 4936 6.147328 ACTGACGGAATAAACTCTAAACTTGC 59.853 38.462 0.00 0.00 0.00 4.01
3321 4937 7.653767 ACTGACGGAATAAACTCTAAACTTG 57.346 36.000 0.00 0.00 0.00 3.16
3322 4938 8.583296 ACTACTGACGGAATAAACTCTAAACTT 58.417 33.333 0.00 0.00 0.00 2.66
3323 4939 8.120140 ACTACTGACGGAATAAACTCTAAACT 57.880 34.615 0.00 0.00 0.00 2.66
3324 4940 8.754230 AACTACTGACGGAATAAACTCTAAAC 57.246 34.615 0.00 0.00 0.00 2.01
3325 4941 9.415544 GAAACTACTGACGGAATAAACTCTAAA 57.584 33.333 0.00 0.00 0.00 1.85
3326 4942 8.031277 GGAAACTACTGACGGAATAAACTCTAA 58.969 37.037 0.00 0.00 0.00 2.10
3327 4943 7.542025 GGAAACTACTGACGGAATAAACTCTA 58.458 38.462 0.00 0.00 0.00 2.43
3328 4944 6.396450 GGAAACTACTGACGGAATAAACTCT 58.604 40.000 0.00 0.00 0.00 3.24
3329 4945 5.287992 CGGAAACTACTGACGGAATAAACTC 59.712 44.000 0.00 0.00 0.00 3.01
3330 4946 5.166398 CGGAAACTACTGACGGAATAAACT 58.834 41.667 0.00 0.00 0.00 2.66
3331 4947 4.201656 GCGGAAACTACTGACGGAATAAAC 60.202 45.833 0.00 0.00 0.00 2.01
3332 4948 3.928375 GCGGAAACTACTGACGGAATAAA 59.072 43.478 0.00 0.00 0.00 1.40
3333 4949 3.194116 AGCGGAAACTACTGACGGAATAA 59.806 43.478 0.00 0.00 0.00 1.40
3334 4950 2.756760 AGCGGAAACTACTGACGGAATA 59.243 45.455 0.00 0.00 0.00 1.75
3335 4951 1.549170 AGCGGAAACTACTGACGGAAT 59.451 47.619 0.00 0.00 0.00 3.01
3336 4952 0.963962 AGCGGAAACTACTGACGGAA 59.036 50.000 0.00 0.00 0.00 4.30
3337 4953 0.963962 AAGCGGAAACTACTGACGGA 59.036 50.000 0.00 0.00 0.00 4.69
3338 4954 1.068474 CAAGCGGAAACTACTGACGG 58.932 55.000 0.00 0.00 0.00 4.79
3339 4955 1.068474 CCAAGCGGAAACTACTGACG 58.932 55.000 0.00 0.00 0.00 4.35
3340 4956 2.165319 ACCAAGCGGAAACTACTGAC 57.835 50.000 0.00 0.00 35.59 3.51
3341 4957 3.767673 AGATACCAAGCGGAAACTACTGA 59.232 43.478 0.00 0.00 35.59 3.41
3342 4958 3.865745 CAGATACCAAGCGGAAACTACTG 59.134 47.826 0.00 0.00 35.59 2.74
3343 4959 3.679083 GCAGATACCAAGCGGAAACTACT 60.679 47.826 0.00 0.00 35.59 2.57
3344 4960 2.608090 GCAGATACCAAGCGGAAACTAC 59.392 50.000 0.00 0.00 35.59 2.73
3345 4961 2.500098 AGCAGATACCAAGCGGAAACTA 59.500 45.455 0.00 0.00 35.59 2.24
3346 4962 1.279271 AGCAGATACCAAGCGGAAACT 59.721 47.619 0.00 0.00 35.59 2.66
3347 4963 1.739067 AGCAGATACCAAGCGGAAAC 58.261 50.000 0.00 0.00 35.59 2.78
3348 4964 2.500098 ACTAGCAGATACCAAGCGGAAA 59.500 45.455 0.00 0.00 35.59 3.13
3349 4965 2.108168 ACTAGCAGATACCAAGCGGAA 58.892 47.619 0.00 0.00 35.59 4.30
3350 4966 1.776662 ACTAGCAGATACCAAGCGGA 58.223 50.000 0.00 0.00 35.59 5.54
3351 4967 2.608261 GCTACTAGCAGATACCAAGCGG 60.608 54.545 2.96 0.00 41.89 5.52
3352 4968 2.667137 GCTACTAGCAGATACCAAGCG 58.333 52.381 2.96 0.00 41.89 4.68
3353 4969 2.608261 CCGCTACTAGCAGATACCAAGC 60.608 54.545 8.78 0.00 42.58 4.01
3354 4970 2.608261 GCCGCTACTAGCAGATACCAAG 60.608 54.545 8.78 0.00 42.58 3.61
3355 4971 1.340248 GCCGCTACTAGCAGATACCAA 59.660 52.381 8.78 0.00 42.58 3.67
3356 4972 0.959553 GCCGCTACTAGCAGATACCA 59.040 55.000 8.78 0.00 42.58 3.25
3357 4973 0.244178 GGCCGCTACTAGCAGATACC 59.756 60.000 8.78 0.00 42.58 2.73
3358 4974 0.109689 CGGCCGCTACTAGCAGATAC 60.110 60.000 14.67 0.00 42.58 2.24
3359 4975 0.250597 TCGGCCGCTACTAGCAGATA 60.251 55.000 23.51 0.00 42.58 1.98
3360 4976 1.107538 TTCGGCCGCTACTAGCAGAT 61.108 55.000 23.51 0.00 42.58 2.90
3361 4977 1.317431 TTTCGGCCGCTACTAGCAGA 61.317 55.000 23.51 0.00 42.58 4.26
3362 4978 0.872021 CTTTCGGCCGCTACTAGCAG 60.872 60.000 23.51 2.80 42.58 4.24
3363 4979 1.141019 CTTTCGGCCGCTACTAGCA 59.859 57.895 23.51 0.00 42.58 3.49
3364 4980 2.238437 GCTTTCGGCCGCTACTAGC 61.238 63.158 23.51 19.12 38.02 3.42
3365 4981 0.872021 CAGCTTTCGGCCGCTACTAG 60.872 60.000 23.51 13.35 43.05 2.57
3366 4982 1.141019 CAGCTTTCGGCCGCTACTA 59.859 57.895 23.51 0.00 43.05 1.82
3367 4983 2.125512 CAGCTTTCGGCCGCTACT 60.126 61.111 23.51 12.29 43.05 2.57
3368 4984 1.740296 TTCAGCTTTCGGCCGCTAC 60.740 57.895 23.51 9.89 43.05 3.58
3369 4985 1.740296 GTTCAGCTTTCGGCCGCTA 60.740 57.895 23.51 8.19 43.05 4.26
3370 4986 2.167398 TAGTTCAGCTTTCGGCCGCT 62.167 55.000 23.51 9.02 43.05 5.52
3371 4987 1.296056 TTAGTTCAGCTTTCGGCCGC 61.296 55.000 23.51 6.18 43.05 6.53
3372 4988 1.136057 GTTTAGTTCAGCTTTCGGCCG 60.136 52.381 22.12 22.12 43.05 6.13
3373 4989 2.095718 CAGTTTAGTTCAGCTTTCGGCC 60.096 50.000 0.00 0.00 43.05 6.13
3374 4990 2.806244 TCAGTTTAGTTCAGCTTTCGGC 59.194 45.455 0.00 0.00 42.19 5.54
3375 4991 5.613358 ATTCAGTTTAGTTCAGCTTTCGG 57.387 39.130 0.00 0.00 0.00 4.30
3376 4992 7.116376 TCACTATTCAGTTTAGTTCAGCTTTCG 59.884 37.037 0.00 0.00 30.46 3.46
3377 4993 8.311650 TCACTATTCAGTTTAGTTCAGCTTTC 57.688 34.615 0.00 0.00 30.46 2.62
3378 4994 8.677148 TTCACTATTCAGTTTAGTTCAGCTTT 57.323 30.769 0.00 0.00 30.46 3.51
3379 4995 8.854614 ATTCACTATTCAGTTTAGTTCAGCTT 57.145 30.769 0.00 0.00 30.46 3.74
3380 4996 9.372369 GTATTCACTATTCAGTTTAGTTCAGCT 57.628 33.333 0.00 0.00 30.46 4.24
3381 4997 8.604890 GGTATTCACTATTCAGTTTAGTTCAGC 58.395 37.037 0.00 0.00 30.46 4.26
3382 4998 9.653287 TGGTATTCACTATTCAGTTTAGTTCAG 57.347 33.333 0.00 0.00 30.46 3.02
3407 5023 9.102757 GAAATACCATAGCAGTCACCATATATG 57.897 37.037 5.68 5.68 0.00 1.78
3408 5024 7.981789 CGAAATACCATAGCAGTCACCATATAT 59.018 37.037 0.00 0.00 0.00 0.86
3409 5025 7.039293 ACGAAATACCATAGCAGTCACCATATA 60.039 37.037 0.00 0.00 0.00 0.86
3410 5026 6.166279 CGAAATACCATAGCAGTCACCATAT 58.834 40.000 0.00 0.00 0.00 1.78
3411 5027 5.069914 ACGAAATACCATAGCAGTCACCATA 59.930 40.000 0.00 0.00 0.00 2.74
3412 5028 4.141711 ACGAAATACCATAGCAGTCACCAT 60.142 41.667 0.00 0.00 0.00 3.55
3413 5029 3.196901 ACGAAATACCATAGCAGTCACCA 59.803 43.478 0.00 0.00 0.00 4.17
3414 5030 3.555956 CACGAAATACCATAGCAGTCACC 59.444 47.826 0.00 0.00 0.00 4.02
3415 5031 3.555956 CCACGAAATACCATAGCAGTCAC 59.444 47.826 0.00 0.00 0.00 3.67
3416 5032 3.449377 TCCACGAAATACCATAGCAGTCA 59.551 43.478 0.00 0.00 0.00 3.41
3417 5033 4.054780 TCCACGAAATACCATAGCAGTC 57.945 45.455 0.00 0.00 0.00 3.51
3418 5034 4.689612 ATCCACGAAATACCATAGCAGT 57.310 40.909 0.00 0.00 0.00 4.40
3419 5035 5.300752 AGAATCCACGAAATACCATAGCAG 58.699 41.667 0.00 0.00 0.00 4.24
3420 5036 5.290493 AGAATCCACGAAATACCATAGCA 57.710 39.130 0.00 0.00 0.00 3.49
3421 5037 5.847670 GAGAATCCACGAAATACCATAGC 57.152 43.478 0.00 0.00 0.00 2.97
3444 5060 0.096976 GGTGCAAATCCGTGTCATCG 59.903 55.000 0.00 0.00 0.00 3.84
3445 5061 0.096976 CGGTGCAAATCCGTGTCATC 59.903 55.000 6.09 0.00 42.62 2.92
3446 5062 2.170738 CGGTGCAAATCCGTGTCAT 58.829 52.632 6.09 0.00 42.62 3.06
3447 5063 3.649096 CGGTGCAAATCCGTGTCA 58.351 55.556 6.09 0.00 42.62 3.58
3453 5069 1.593006 CGACTATGACGGTGCAAATCC 59.407 52.381 0.00 0.00 0.00 3.01
3454 5070 2.268298 ACGACTATGACGGTGCAAATC 58.732 47.619 0.00 0.00 34.93 2.17
3455 5071 2.380084 ACGACTATGACGGTGCAAAT 57.620 45.000 0.00 0.00 34.93 2.32
3456 5072 1.795872 CAACGACTATGACGGTGCAAA 59.204 47.619 0.00 0.00 41.30 3.68
3457 5073 1.424403 CAACGACTATGACGGTGCAA 58.576 50.000 0.00 0.00 41.30 4.08
3458 5074 3.116073 CAACGACTATGACGGTGCA 57.884 52.632 0.00 0.00 41.30 4.57
3467 5083 8.788806 TGGAAACAATTTAATCACAACGACTAT 58.211 29.630 0.00 0.00 37.44 2.12
3469 5085 7.033530 TGGAAACAATTTAATCACAACGACT 57.966 32.000 0.00 0.00 37.44 4.18
3491 5107 2.764269 TCCTAGAACCCCTTCAGATGG 58.236 52.381 0.00 0.00 0.00 3.51
3493 5109 4.908481 GGTAATCCTAGAACCCCTTCAGAT 59.092 45.833 0.00 0.00 0.00 2.90
3494 5110 4.265124 TGGTAATCCTAGAACCCCTTCAGA 60.265 45.833 0.00 0.00 31.97 3.27
3495 5111 4.037927 TGGTAATCCTAGAACCCCTTCAG 58.962 47.826 0.00 0.00 31.97 3.02
3496 5112 4.083080 TGGTAATCCTAGAACCCCTTCA 57.917 45.455 0.00 0.00 31.97 3.02
3497 5113 4.908481 AGATGGTAATCCTAGAACCCCTTC 59.092 45.833 0.00 0.00 32.77 3.46
3499 5115 4.235372 CAGATGGTAATCCTAGAACCCCT 58.765 47.826 0.00 0.00 32.77 4.79
3501 5117 3.391296 TGCAGATGGTAATCCTAGAACCC 59.609 47.826 0.00 0.00 32.77 4.11
3502 5118 4.689612 TGCAGATGGTAATCCTAGAACC 57.310 45.455 0.00 0.00 32.77 3.62
3504 5120 4.721776 ACCTTGCAGATGGTAATCCTAGAA 59.278 41.667 6.36 0.00 34.36 2.10
3543 5166 1.032114 TCGAGCTTCATCGGAGCAGA 61.032 55.000 0.00 0.00 42.93 4.26
3544 5167 0.031857 ATCGAGCTTCATCGGAGCAG 59.968 55.000 0.00 0.00 42.93 4.24
3549 5172 1.009078 TTGCAATCGAGCTTCATCGG 58.991 50.000 0.00 0.00 42.93 4.18
3566 5189 3.928727 AACAGTCAGGAATGTGCATTG 57.071 42.857 2.90 0.00 38.83 2.82
3630 5253 4.130118 CCTACTAATTTTCTCAGCGCCAT 58.870 43.478 2.29 0.00 0.00 4.40
3635 5258 9.478768 GGTAAGATACCTACTAATTTTCTCAGC 57.521 37.037 0.00 0.00 45.52 4.26
3659 5282 7.676947 ACATACTAGTGTAACATGAAACAGGT 58.323 34.615 5.39 5.43 41.43 4.00
3660 5283 9.084164 GTACATACTAGTGTAACATGAAACAGG 57.916 37.037 5.39 0.00 41.43 4.00
3661 5284 9.634163 TGTACATACTAGTGTAACATGAAACAG 57.366 33.333 5.39 0.00 41.43 3.16
3662 5285 9.984190 TTGTACATACTAGTGTAACATGAAACA 57.016 29.630 5.39 8.16 41.43 2.83
3664 5287 9.146984 GCTTGTACATACTAGTGTAACATGAAA 57.853 33.333 5.39 0.00 41.43 2.69
3665 5288 8.528643 AGCTTGTACATACTAGTGTAACATGAA 58.471 33.333 5.39 0.00 41.43 2.57
3666 5289 8.063200 AGCTTGTACATACTAGTGTAACATGA 57.937 34.615 5.39 0.00 41.43 3.07
3667 5290 7.973944 TGAGCTTGTACATACTAGTGTAACATG 59.026 37.037 5.39 9.93 41.43 3.21
3668 5291 8.063200 TGAGCTTGTACATACTAGTGTAACAT 57.937 34.615 5.39 0.00 41.43 2.71
3669 5292 7.457024 TGAGCTTGTACATACTAGTGTAACA 57.543 36.000 5.39 4.34 41.43 2.41
3670 5293 8.928270 AATGAGCTTGTACATACTAGTGTAAC 57.072 34.615 5.39 1.61 36.42 2.50
3675 5298 9.464714 CGAAATAATGAGCTTGTACATACTAGT 57.535 33.333 0.00 0.00 32.77 2.57
3676 5299 9.678941 TCGAAATAATGAGCTTGTACATACTAG 57.321 33.333 0.00 0.00 33.22 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.