Multiple sequence alignment - TraesCS2B01G594300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G594300 chr2B 100.000 2348 0 0 1 2348 779041923 779039576 0.000000e+00 4337.0
1 TraesCS2B01G594300 chr2B 85.561 187 20 4 2047 2233 778990799 778990620 3.080000e-44 189.0
2 TraesCS2B01G594300 chr2B 98.246 57 1 0 2101 2157 779034262 779034206 1.480000e-17 100.0
3 TraesCS2B01G594300 chr2B 90.698 43 4 0 2276 2318 6995489 6995531 9.060000e-05 58.4
4 TraesCS2B01G594300 chr2B 90.698 43 4 0 2276 2318 454688663 454688705 9.060000e-05 58.4
5 TraesCS2B01G594300 chr2D 90.492 915 45 18 693 1577 635089947 635089045 0.000000e+00 1170.0
6 TraesCS2B01G594300 chr2D 83.884 484 29 16 1363 1829 564406017 564405566 1.300000e-112 416.0
7 TraesCS2B01G594300 chr2D 86.631 374 26 9 1837 2203 635088771 635088415 2.190000e-105 392.0
8 TraesCS2B01G594300 chr2D 94.286 35 1 1 2286 2320 4020575 4020608 4.000000e-03 52.8
9 TraesCS2B01G594300 chr2A 88.817 921 43 24 657 1560 778159871 778160748 0.000000e+00 1075.0
10 TraesCS2B01G594300 chr2A 92.086 417 25 5 1 409 778159266 778159682 4.350000e-162 580.0
11 TraesCS2B01G594300 chr2A 88.400 250 14 4 1934 2183 778161103 778161337 1.060000e-73 287.0
12 TraesCS2B01G594300 chr2A 84.615 208 17 6 1953 2160 778806787 778806979 2.380000e-45 193.0
13 TraesCS2B01G594300 chr5B 80.659 941 86 37 920 1829 162827153 162826278 1.970000e-180 641.0
14 TraesCS2B01G594300 chr5B 89.807 363 28 5 1 362 264913110 264912756 7.650000e-125 457.0
15 TraesCS2B01G594300 chr5B 89.011 364 34 5 1 362 425667242 425667601 1.660000e-121 446.0
16 TraesCS2B01G594300 chr5B 95.726 117 3 2 405 520 659973743 659973858 1.110000e-43 187.0
17 TraesCS2B01G594300 chr5B 92.623 122 7 2 393 514 439062708 439062589 8.630000e-40 174.0
18 TraesCS2B01G594300 chr5B 95.000 80 3 1 331 409 264912755 264912676 8.810000e-25 124.0
19 TraesCS2B01G594300 chr7D 86.000 550 41 15 943 1477 451488131 451487603 7.330000e-155 556.0
20 TraesCS2B01G594300 chr7D 85.119 336 25 11 1498 1829 451486432 451486118 1.050000e-83 320.0
21 TraesCS2B01G594300 chr7D 95.652 115 5 0 404 518 479651715 479651829 3.980000e-43 185.0
22 TraesCS2B01G594300 chr7D 92.562 121 9 0 407 527 267574995 267575115 8.630000e-40 174.0
23 TraesCS2B01G594300 chr1A 88.119 404 38 9 1041 1435 237228277 237228679 2.730000e-129 472.0
24 TraesCS2B01G594300 chr1A 82.400 375 43 8 37 409 525005310 525004957 2.930000e-79 305.0
25 TraesCS2B01G594300 chr1A 83.562 146 13 4 265 409 524984596 524984461 2.450000e-25 126.0
26 TraesCS2B01G594300 chr1A 97.368 38 1 0 372 409 523124220 523124257 5.420000e-07 65.8
27 TraesCS2B01G594300 chr1A 96.875 32 1 0 511 542 523122869 523122900 1.000000e-03 54.7
28 TraesCS2B01G594300 chr1A 96.875 32 1 0 511 542 523125264 523125295 1.000000e-03 54.7
29 TraesCS2B01G594300 chr1A 100.000 28 0 0 511 538 523124254 523124281 4.000000e-03 52.8
30 TraesCS2B01G594300 chr1A 100.000 28 0 0 511 538 525003947 525003920 4.000000e-03 52.8
31 TraesCS2B01G594300 chr1A 100.000 28 0 0 511 538 525005941 525005914 4.000000e-03 52.8
32 TraesCS2B01G594300 chr7B 86.758 438 36 9 1049 1477 505000602 505000178 3.530000e-128 468.0
33 TraesCS2B01G594300 chr7B 82.327 447 36 22 1393 1829 669996865 669997278 4.800000e-92 348.0
34 TraesCS2B01G594300 chr3B 89.560 364 32 5 1 362 174464286 174463927 7.650000e-125 457.0
35 TraesCS2B01G594300 chr1B 88.462 364 36 5 1 362 656527187 656526828 3.580000e-118 435.0
36 TraesCS2B01G594300 chr4D 89.049 347 19 7 1138 1477 16298667 16298333 1.680000e-111 412.0
37 TraesCS2B01G594300 chr4D 88.761 347 20 7 1138 1477 16323882 16323548 7.810000e-110 407.0
38 TraesCS2B01G594300 chr4D 90.517 116 4 3 1715 1829 16297482 16297373 1.880000e-31 147.0
39 TraesCS2B01G594300 chr4D 90.517 116 4 3 1715 1829 16322403 16322294 1.880000e-31 147.0
40 TraesCS2B01G594300 chr4D 91.667 60 5 0 2261 2320 221302116 221302057 1.500000e-12 84.2
41 TraesCS2B01G594300 chr6B 88.785 321 21 4 1160 1477 620275469 620275161 1.700000e-101 379.0
42 TraesCS2B01G594300 chr6B 87.029 239 29 2 168 405 608997536 608997773 3.850000e-68 268.0
43 TraesCS2B01G594300 chr6B 96.491 114 3 1 405 517 679091037 679090924 1.110000e-43 187.0
44 TraesCS2B01G594300 chr1D 85.714 336 23 11 1498 1829 21733079 21732765 4.840000e-87 331.0
45 TraesCS2B01G594300 chr3A 84.384 333 31 9 940 1260 715508737 715509060 8.150000e-80 307.0
46 TraesCS2B01G594300 chr3A 83.146 267 20 13 1567 1829 715534513 715534758 1.090000e-53 220.0
47 TraesCS2B01G594300 chr3A 94.783 115 6 0 404 518 638982428 638982542 1.850000e-41 180.0
48 TraesCS2B01G594300 chr3A 92.562 121 8 1 404 523 661930649 661930769 3.100000e-39 172.0
49 TraesCS2B01G594300 chr3A 91.667 72 6 0 1498 1569 715511337 715511408 1.480000e-17 100.0
50 TraesCS2B01G594300 chr6A 87.295 244 29 2 168 410 551639885 551640127 6.390000e-71 278.0
51 TraesCS2B01G594300 chr6A 87.963 216 24 2 37 250 551639671 551639886 1.080000e-63 254.0
52 TraesCS2B01G594300 chr6A 93.548 124 6 2 399 520 542057047 542057170 1.430000e-42 183.0
53 TraesCS2B01G594300 chr4A 92.000 125 8 2 404 527 5772134 5772011 8.630000e-40 174.0
54 TraesCS2B01G594300 chr4A 95.745 47 2 0 2271 2317 389242236 389242282 2.500000e-10 76.8
55 TraesCS2B01G594300 chr4A 93.617 47 3 0 2271 2317 441757698 441757652 1.160000e-08 71.3
56 TraesCS2B01G594300 chrUn 94.000 50 3 0 2271 2320 56924744 56924695 2.500000e-10 76.8
57 TraesCS2B01G594300 chr6D 88.000 50 6 0 2271 2320 365847397 365847348 2.520000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G594300 chr2B 779039576 779041923 2347 True 4337.000000 4337 100.000000 1 2348 1 chr2B.!!$R3 2347
1 TraesCS2B01G594300 chr2D 635088415 635089947 1532 True 781.000000 1170 88.561500 693 2203 2 chr2D.!!$R2 1510
2 TraesCS2B01G594300 chr2A 778159266 778161337 2071 False 647.333333 1075 89.767667 1 2183 3 chr2A.!!$F2 2182
3 TraesCS2B01G594300 chr5B 162826278 162827153 875 True 641.000000 641 80.659000 920 1829 1 chr5B.!!$R1 909
4 TraesCS2B01G594300 chr7D 451486118 451488131 2013 True 438.000000 556 85.559500 943 1829 2 chr7D.!!$R1 886
5 TraesCS2B01G594300 chr4D 16297373 16298667 1294 True 279.500000 412 89.783000 1138 1829 2 chr4D.!!$R2 691
6 TraesCS2B01G594300 chr4D 16322294 16323882 1588 True 277.000000 407 89.639000 1138 1829 2 chr4D.!!$R3 691
7 TraesCS2B01G594300 chr3A 715508737 715511408 2671 False 203.500000 307 88.025500 940 1569 2 chr3A.!!$F4 629

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
599 641 0.177141 TATCTTCTCCGGTTTGCGGG 59.823 55.0 0.0 0.0 36.54 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2204 5303 0.105039 GATCGGCGACCCTCAAGAAT 59.895 55.0 13.76 0.0 0.0 2.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.880890 AGTCTGTGTTTGAGGCAATGAC 59.119 45.455 0.00 0.00 0.00 3.06
50 51 4.463891 ACCATAAAAAGGATGGAGCTGTTG 59.536 41.667 8.62 0.00 45.89 3.33
64 65 1.698165 CTGTTGCTGCTTGCTCATTG 58.302 50.000 0.00 0.00 43.37 2.82
71 72 2.163815 GCTGCTTGCTCATTGATTGACT 59.836 45.455 0.00 0.00 38.95 3.41
72 73 3.376234 GCTGCTTGCTCATTGATTGACTA 59.624 43.478 0.00 0.00 38.95 2.59
98 102 5.584442 TCCTTCGCAAATTCAATCATCATG 58.416 37.500 0.00 0.00 0.00 3.07
100 104 6.040054 TCCTTCGCAAATTCAATCATCATGAT 59.960 34.615 1.18 1.18 39.09 2.45
125 129 2.094675 CCTCCATGTTCACATTCACCC 58.905 52.381 0.00 0.00 33.61 4.61
151 155 0.177604 CTGACCTCATCCTGAGCACC 59.822 60.000 0.00 0.00 42.98 5.01
158 162 1.134699 TCATCCTGAGCACCGCTAAAG 60.135 52.381 0.00 0.00 39.88 1.85
247 251 8.204160 TCACTTTTAGTATCCATCGATCAATGT 58.796 33.333 0.00 0.00 0.00 2.71
248 252 8.278408 CACTTTTAGTATCCATCGATCAATGTG 58.722 37.037 0.00 0.00 0.00 3.21
262 266 5.163723 CGATCAATGTGTAGAATTTGGCAGT 60.164 40.000 0.00 0.00 0.00 4.40
264 268 5.069318 TCAATGTGTAGAATTTGGCAGTGA 58.931 37.500 0.00 0.00 0.00 3.41
300 304 5.047519 AGTTTGAGAATTTGGATTGCAGGAG 60.048 40.000 0.00 0.00 0.00 3.69
333 338 3.181454 GGGTTCAGACCTTCAGAGTTTGA 60.181 47.826 0.00 0.00 45.75 2.69
334 339 4.505742 GGGTTCAGACCTTCAGAGTTTGAT 60.506 45.833 0.00 0.00 45.75 2.57
364 369 1.474077 GCACTTGCTGTATTTGGGGAG 59.526 52.381 0.00 0.00 38.21 4.30
366 371 3.012518 CACTTGCTGTATTTGGGGAGAG 58.987 50.000 0.00 0.00 0.00 3.20
373 378 4.687219 GCTGTATTTGGGGAGAGCAATACT 60.687 45.833 0.00 0.00 34.50 2.12
409 418 4.881850 AGGGCTACAACTAATTGCATGTAC 59.118 41.667 0.00 0.00 39.66 2.90
410 419 4.881850 GGGCTACAACTAATTGCATGTACT 59.118 41.667 0.00 0.00 39.66 2.73
411 420 5.007724 GGGCTACAACTAATTGCATGTACTC 59.992 44.000 0.00 0.00 39.66 2.59
412 421 5.584649 GGCTACAACTAATTGCATGTACTCA 59.415 40.000 0.00 0.00 39.66 3.41
413 422 6.456988 GGCTACAACTAATTGCATGTACTCAC 60.457 42.308 0.00 0.00 39.66 3.51
414 423 6.313905 GCTACAACTAATTGCATGTACTCACT 59.686 38.462 0.00 0.00 39.66 3.41
415 424 6.727824 ACAACTAATTGCATGTACTCACTC 57.272 37.500 0.00 0.00 39.66 3.51
416 425 5.643777 ACAACTAATTGCATGTACTCACTCC 59.356 40.000 0.00 0.00 39.66 3.85
417 426 4.433615 ACTAATTGCATGTACTCACTCCG 58.566 43.478 0.00 0.00 0.00 4.63
418 427 3.334583 AATTGCATGTACTCACTCCGT 57.665 42.857 0.00 0.00 0.00 4.69
419 428 2.831685 TTGCATGTACTCACTCCGTT 57.168 45.000 0.00 0.00 0.00 4.44
420 429 2.363788 TGCATGTACTCACTCCGTTC 57.636 50.000 0.00 0.00 0.00 3.95
421 430 1.269166 GCATGTACTCACTCCGTTCG 58.731 55.000 0.00 0.00 0.00 3.95
422 431 1.909376 CATGTACTCACTCCGTTCGG 58.091 55.000 4.74 4.74 0.00 4.30
423 432 1.471287 CATGTACTCACTCCGTTCGGA 59.529 52.381 13.34 13.34 0.00 4.55
424 433 1.608055 TGTACTCACTCCGTTCGGAA 58.392 50.000 14.79 0.04 33.41 4.30
425 434 2.165167 TGTACTCACTCCGTTCGGAAT 58.835 47.619 14.79 2.10 33.41 3.01
426 435 2.559668 TGTACTCACTCCGTTCGGAATT 59.440 45.455 14.79 2.66 33.41 2.17
427 436 3.758023 TGTACTCACTCCGTTCGGAATTA 59.242 43.478 14.79 0.00 33.41 1.40
428 437 3.227810 ACTCACTCCGTTCGGAATTAC 57.772 47.619 14.79 0.00 33.41 1.89
429 438 2.824341 ACTCACTCCGTTCGGAATTACT 59.176 45.455 14.79 0.00 33.41 2.24
430 439 3.257624 ACTCACTCCGTTCGGAATTACTT 59.742 43.478 14.79 0.00 33.41 2.24
431 440 3.581755 TCACTCCGTTCGGAATTACTTG 58.418 45.455 14.79 4.43 33.41 3.16
432 441 3.006110 TCACTCCGTTCGGAATTACTTGT 59.994 43.478 14.79 5.03 33.41 3.16
433 442 3.367025 CACTCCGTTCGGAATTACTTGTC 59.633 47.826 14.79 0.00 33.41 3.18
434 443 3.257624 ACTCCGTTCGGAATTACTTGTCT 59.742 43.478 14.79 0.00 33.41 3.41
435 444 4.243270 CTCCGTTCGGAATTACTTGTCTT 58.757 43.478 14.79 0.00 33.41 3.01
436 445 3.991773 TCCGTTCGGAATTACTTGTCTTG 59.008 43.478 11.66 0.00 0.00 3.02
437 446 3.124636 CCGTTCGGAATTACTTGTCTTGG 59.875 47.826 5.19 0.00 0.00 3.61
438 447 3.991773 CGTTCGGAATTACTTGTCTTGGA 59.008 43.478 0.00 0.00 0.00 3.53
439 448 4.449743 CGTTCGGAATTACTTGTCTTGGAA 59.550 41.667 0.00 0.00 0.00 3.53
440 449 5.049954 CGTTCGGAATTACTTGTCTTGGAAA 60.050 40.000 0.00 0.00 0.00 3.13
441 450 6.348213 CGTTCGGAATTACTTGTCTTGGAAAT 60.348 38.462 0.00 0.00 0.00 2.17
442 451 6.494893 TCGGAATTACTTGTCTTGGAAATG 57.505 37.500 0.00 0.00 0.00 2.32
443 452 5.414454 TCGGAATTACTTGTCTTGGAAATGG 59.586 40.000 0.00 0.00 0.00 3.16
444 453 5.414454 CGGAATTACTTGTCTTGGAAATGGA 59.586 40.000 0.00 0.00 0.00 3.41
445 454 6.095440 CGGAATTACTTGTCTTGGAAATGGAT 59.905 38.462 0.00 0.00 0.00 3.41
446 455 7.260603 GGAATTACTTGTCTTGGAAATGGATG 58.739 38.462 0.00 0.00 0.00 3.51
447 456 7.093771 GGAATTACTTGTCTTGGAAATGGATGT 60.094 37.037 0.00 0.00 0.00 3.06
448 457 8.877864 AATTACTTGTCTTGGAAATGGATGTA 57.122 30.769 0.00 0.00 0.00 2.29
449 458 9.479549 AATTACTTGTCTTGGAAATGGATGTAT 57.520 29.630 0.00 0.00 0.00 2.29
450 459 8.506168 TTACTTGTCTTGGAAATGGATGTATC 57.494 34.615 0.00 0.00 0.00 2.24
451 460 6.725364 ACTTGTCTTGGAAATGGATGTATCT 58.275 36.000 0.00 0.00 0.00 1.98
452 461 7.861629 ACTTGTCTTGGAAATGGATGTATCTA 58.138 34.615 0.00 0.00 0.00 1.98
453 462 7.989741 ACTTGTCTTGGAAATGGATGTATCTAG 59.010 37.037 0.00 0.00 0.00 2.43
454 463 7.675161 TGTCTTGGAAATGGATGTATCTAGA 57.325 36.000 0.00 0.00 0.00 2.43
455 464 8.089625 TGTCTTGGAAATGGATGTATCTAGAA 57.910 34.615 0.00 0.00 0.00 2.10
456 465 7.987458 TGTCTTGGAAATGGATGTATCTAGAAC 59.013 37.037 0.00 0.00 0.00 3.01
457 466 8.207545 GTCTTGGAAATGGATGTATCTAGAACT 58.792 37.037 0.00 0.00 0.00 3.01
458 467 9.434275 TCTTGGAAATGGATGTATCTAGAACTA 57.566 33.333 0.00 0.00 0.00 2.24
487 496 9.794685 ATATGTCTAGATACATGTATTTCTGCG 57.205 33.333 19.19 9.62 40.29 5.18
488 497 7.272037 TGTCTAGATACATGTATTTCTGCGA 57.728 36.000 19.19 11.43 0.00 5.10
489 498 7.139392 TGTCTAGATACATGTATTTCTGCGAC 58.861 38.462 19.19 19.96 0.00 5.19
490 499 7.139392 GTCTAGATACATGTATTTCTGCGACA 58.861 38.462 19.19 0.00 0.00 4.35
491 500 7.648112 GTCTAGATACATGTATTTCTGCGACAA 59.352 37.037 19.19 0.00 0.00 3.18
492 501 6.834959 AGATACATGTATTTCTGCGACAAG 57.165 37.500 19.19 0.00 0.00 3.16
493 502 6.341316 AGATACATGTATTTCTGCGACAAGT 58.659 36.000 19.19 0.00 0.00 3.16
494 503 7.489160 AGATACATGTATTTCTGCGACAAGTA 58.511 34.615 19.19 0.00 33.36 2.24
495 504 7.979537 AGATACATGTATTTCTGCGACAAGTAA 59.020 33.333 19.19 0.00 32.79 2.24
496 505 6.985188 ACATGTATTTCTGCGACAAGTAAT 57.015 33.333 0.00 0.00 0.00 1.89
497 506 7.377766 ACATGTATTTCTGCGACAAGTAATT 57.622 32.000 0.00 0.00 0.00 1.40
498 507 7.464358 ACATGTATTTCTGCGACAAGTAATTC 58.536 34.615 0.00 0.00 0.00 2.17
499 508 6.417191 TGTATTTCTGCGACAAGTAATTCC 57.583 37.500 0.00 0.00 0.00 3.01
500 509 4.600012 ATTTCTGCGACAAGTAATTCCG 57.400 40.909 0.00 0.00 0.00 4.30
501 510 3.306917 TTCTGCGACAAGTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
502 511 3.306917 TCTGCGACAAGTAATTCCGAA 57.693 42.857 0.00 0.00 0.00 4.30
503 512 2.991190 TCTGCGACAAGTAATTCCGAAC 59.009 45.455 0.00 0.00 0.00 3.95
504 513 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95
505 514 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
506 515 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
507 516 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
508 517 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
509 518 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
510 519 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
511 520 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
512 521 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
513 522 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
518 527 4.371624 TCCGAACGGAGGGAGTATATAA 57.628 45.455 12.04 0.00 39.76 0.98
522 531 5.221303 CCGAACGGAGGGAGTATATAAACAA 60.221 44.000 7.53 0.00 37.50 2.83
538 547 2.949451 ACAAGGTAGTGATCAGCTCG 57.051 50.000 0.00 0.00 0.00 5.03
542 584 0.671251 GGTAGTGATCAGCTCGGAGG 59.329 60.000 7.20 0.00 0.00 4.30
546 588 1.456518 TGATCAGCTCGGAGGGAGG 60.457 63.158 7.20 0.00 43.36 4.30
553 595 1.542175 CTCGGAGGGAGGGGTCATA 59.458 63.158 0.00 0.00 39.22 2.15
565 607 1.705997 GGGTCATACCGCATTCCCCT 61.706 60.000 0.00 0.00 39.83 4.79
571 613 0.251386 TACCGCATTCCCCTGCAAAA 60.251 50.000 0.00 0.00 42.40 2.44
572 614 1.216178 CCGCATTCCCCTGCAAAAG 59.784 57.895 0.00 0.00 42.40 2.27
578 620 1.872773 TTCCCCTGCAAAAGTTTGGT 58.127 45.000 5.95 0.00 38.57 3.67
581 623 2.035632 CCCCTGCAAAAGTTTGGTGTA 58.964 47.619 5.95 0.00 38.57 2.90
584 626 3.573967 CCCTGCAAAAGTTTGGTGTATCT 59.426 43.478 5.95 0.00 38.57 1.98
598 640 1.287425 GTATCTTCTCCGGTTTGCGG 58.713 55.000 0.00 0.00 0.00 5.69
599 641 0.177141 TATCTTCTCCGGTTTGCGGG 59.823 55.000 0.00 0.00 36.54 6.13
606 648 0.675522 TCCGGTTTGCGGGAGAAATC 60.676 55.000 0.00 0.00 38.90 2.17
608 650 0.878416 CGGTTTGCGGGAGAAATCAA 59.122 50.000 0.00 0.00 0.00 2.57
609 651 1.135689 CGGTTTGCGGGAGAAATCAAG 60.136 52.381 0.00 0.00 0.00 3.02
611 653 2.296190 GGTTTGCGGGAGAAATCAAGTT 59.704 45.455 0.00 0.00 0.00 2.66
613 655 1.438651 TGCGGGAGAAATCAAGTTCG 58.561 50.000 0.00 0.00 32.50 3.95
614 656 1.001520 TGCGGGAGAAATCAAGTTCGA 59.998 47.619 0.00 0.00 32.50 3.71
622 664 0.958876 AATCAAGTTCGAACCGCCCC 60.959 55.000 24.22 0.00 0.00 5.80
627 682 3.383681 TTCGAACCGCCCCGATCA 61.384 61.111 0.00 0.00 34.58 2.92
629 684 3.192922 CGAACCGCCCCGATCAAC 61.193 66.667 0.00 0.00 0.00 3.18
638 693 1.714899 CCCCGATCAACGTTGGATGC 61.715 60.000 27.02 13.11 40.78 3.91
644 699 1.974265 TCAACGTTGGATGCCTTTCA 58.026 45.000 27.02 1.57 0.00 2.69
646 701 3.680490 TCAACGTTGGATGCCTTTCATA 58.320 40.909 27.02 0.81 35.05 2.15
647 702 3.689161 TCAACGTTGGATGCCTTTCATAG 59.311 43.478 27.02 0.00 35.05 2.23
648 703 3.350219 ACGTTGGATGCCTTTCATAGT 57.650 42.857 0.00 0.00 35.05 2.12
650 705 3.689649 ACGTTGGATGCCTTTCATAGTTC 59.310 43.478 0.00 0.00 35.05 3.01
651 706 3.689161 CGTTGGATGCCTTTCATAGTTCA 59.311 43.478 0.00 0.00 35.05 3.18
652 707 4.201851 CGTTGGATGCCTTTCATAGTTCAG 60.202 45.833 0.00 0.00 35.05 3.02
654 709 4.517285 TGGATGCCTTTCATAGTTCAGAC 58.483 43.478 0.00 0.00 35.05 3.51
655 710 4.019411 TGGATGCCTTTCATAGTTCAGACA 60.019 41.667 0.00 0.00 35.05 3.41
663 718 2.002586 CATAGTTCAGACAGTTGCGGG 58.997 52.381 0.00 0.00 0.00 6.13
666 721 0.951040 GTTCAGACAGTTGCGGGAGG 60.951 60.000 0.00 0.00 0.00 4.30
671 726 0.534203 GACAGTTGCGGGAGGTTTGA 60.534 55.000 0.00 0.00 0.00 2.69
673 728 1.073199 AGTTGCGGGAGGTTTGAGG 59.927 57.895 0.00 0.00 0.00 3.86
674 729 1.228154 GTTGCGGGAGGTTTGAGGT 60.228 57.895 0.00 0.00 0.00 3.85
675 730 1.072505 TTGCGGGAGGTTTGAGGTC 59.927 57.895 0.00 0.00 0.00 3.85
676 731 1.415672 TTGCGGGAGGTTTGAGGTCT 61.416 55.000 0.00 0.00 0.00 3.85
683 739 0.535102 AGGTTTGAGGTCTGCGTTGG 60.535 55.000 0.00 0.00 0.00 3.77
730 786 8.428063 TGGATAATGTCTTTGTGTTTCCAAATT 58.572 29.630 0.00 0.00 34.07 1.82
779 835 2.742589 GAGGAGAAACCAGCGGTAAAAG 59.257 50.000 0.62 0.00 42.04 2.27
796 852 5.361571 GGTAAAAGGACAAGGAAGGAAAACA 59.638 40.000 0.00 0.00 0.00 2.83
1013 1071 4.170947 GGCAATGCCTCCATCTCC 57.829 61.111 18.47 0.00 46.69 3.71
1014 1072 1.228228 GGCAATGCCTCCATCTCCA 59.772 57.895 18.47 0.00 46.69 3.86
1015 1073 0.178970 GGCAATGCCTCCATCTCCAT 60.179 55.000 18.47 0.00 46.69 3.41
1016 1074 0.959553 GCAATGCCTCCATCTCCATG 59.040 55.000 0.00 0.00 0.00 3.66
1023 1081 4.193893 CCATCTCCATGGGCGGCA 62.194 66.667 13.02 0.00 45.63 5.69
1065 1138 3.048475 CTGCTGCTGCTGCTCGTT 61.048 61.111 27.67 0.00 40.48 3.85
1105 1178 2.515290 CCATCGGCATCAGCAGCA 60.515 61.111 0.00 0.00 44.61 4.41
1275 2762 1.076533 CCTACTACAACTGCCGCGTG 61.077 60.000 4.92 0.00 0.00 5.34
1353 2840 1.753649 GACGACCCTTCCTAGGTAACC 59.246 57.143 9.08 0.00 40.19 2.85
1359 2852 2.236395 CCCTTCCTAGGTAACCACTGTG 59.764 54.545 9.08 0.00 40.19 3.66
1395 2888 2.688666 TGGATCCAGAAGGCGGCT 60.689 61.111 11.44 5.25 33.74 5.52
1431 2924 2.062777 TGTTTTGCTTGCTGGGCCA 61.063 52.632 5.85 5.85 0.00 5.36
1433 2926 1.761667 TTTTGCTTGCTGGGCCAGT 60.762 52.632 32.80 0.00 33.43 4.00
1434 2927 0.468958 TTTTGCTTGCTGGGCCAGTA 60.469 50.000 32.80 27.45 33.43 2.74
1435 2928 0.895100 TTTGCTTGCTGGGCCAGTAG 60.895 55.000 32.80 28.13 33.43 2.57
1436 2929 2.067932 TTGCTTGCTGGGCCAGTAGT 62.068 55.000 32.80 0.00 33.43 2.73
1437 2930 2.042831 GCTTGCTGGGCCAGTAGTG 61.043 63.158 32.80 24.21 33.43 2.74
1438 2931 1.679311 CTTGCTGGGCCAGTAGTGA 59.321 57.895 32.80 14.40 33.43 3.41
1562 4523 3.055094 CGGAGGAACCTGGATTATATGGG 60.055 52.174 0.00 0.00 36.31 4.00
1585 4572 7.742213 TGGGGTGTTATATTATAGAACCTGGAT 59.258 37.037 0.00 0.00 0.00 3.41
1586 4573 8.612145 GGGGTGTTATATTATAGAACCTGGATT 58.388 37.037 0.00 0.00 0.00 3.01
1599 4605 7.446106 AGAACCTGGATTATATGGTGTGTAA 57.554 36.000 0.00 0.00 32.53 2.41
1601 4607 8.502738 AGAACCTGGATTATATGGTGTGTAATT 58.497 33.333 0.00 0.00 32.53 1.40
1641 4660 5.306937 TGTTGTGATCCTCCTAGTCTTTTCA 59.693 40.000 0.00 0.00 0.00 2.69
1651 4673 9.042450 TCCTCCTAGTCTTTTCATGTATGTTTA 57.958 33.333 0.00 0.00 0.00 2.01
1681 4705 4.321824 GGTCAGTAGGTGAAGTCAGTAACC 60.322 50.000 0.00 0.00 36.74 2.85
1700 4724 1.670811 CCACTGACGGGTGAATAATGC 59.329 52.381 6.94 0.00 39.34 3.56
1707 4731 2.158475 ACGGGTGAATAATGCATCCCAT 60.158 45.455 16.74 1.05 32.79 4.00
1708 4732 2.892852 CGGGTGAATAATGCATCCCATT 59.107 45.455 16.74 9.53 45.75 3.16
1710 4734 3.259123 GGGTGAATAATGCATCCCATTCC 59.741 47.826 18.57 10.78 42.99 3.01
1711 4735 3.259123 GGTGAATAATGCATCCCATTCCC 59.741 47.826 18.57 16.01 42.99 3.97
1713 4737 1.549203 ATAATGCATCCCATTCCCGC 58.451 50.000 0.00 0.00 42.99 6.13
1735 4761 1.443802 GGAGGCACTACTGAACTTGC 58.556 55.000 0.00 0.00 41.55 4.01
1736 4762 1.270839 GGAGGCACTACTGAACTTGCA 60.271 52.381 0.00 0.00 41.55 4.08
1737 4763 2.072298 GAGGCACTACTGAACTTGCAG 58.928 52.381 0.00 0.00 41.55 4.41
1738 4764 0.519077 GGCACTACTGAACTTGCAGC 59.481 55.000 0.00 0.00 39.51 5.25
1739 4765 1.229428 GCACTACTGAACTTGCAGCA 58.771 50.000 0.00 0.00 39.51 4.41
1740 4766 1.603802 GCACTACTGAACTTGCAGCAA 59.396 47.619 7.81 7.81 39.51 3.91
1741 4767 2.227388 GCACTACTGAACTTGCAGCAAT 59.773 45.455 8.67 0.00 39.51 3.56
1742 4768 3.818387 CACTACTGAACTTGCAGCAATG 58.182 45.455 8.67 5.70 39.51 2.82
1743 4769 2.816087 ACTACTGAACTTGCAGCAATGG 59.184 45.455 8.67 0.00 39.51 3.16
1744 4770 0.316204 ACTGAACTTGCAGCAATGGC 59.684 50.000 8.67 1.36 39.51 4.40
1745 4771 0.315886 CTGAACTTGCAGCAATGGCA 59.684 50.000 8.67 6.08 44.61 4.92
1772 4798 0.036952 AGCAACGGATGACACCAGAG 60.037 55.000 0.00 0.00 0.00 3.35
1885 4980 0.041839 CCAATCGCGTAATGAGCTGC 60.042 55.000 5.77 0.00 0.00 5.25
1893 4988 2.540361 GCGTAATGAGCTGCTTTGATGG 60.540 50.000 2.53 0.00 0.00 3.51
1902 5000 0.403655 TGCTTTGATGGTGCTACCCA 59.596 50.000 3.33 0.00 37.50 4.51
1920 5018 1.561542 CCACAGCTGGGTTCTAGGATT 59.438 52.381 19.93 0.00 33.23 3.01
1929 5027 5.036117 TGGGTTCTAGGATTAACATCTGC 57.964 43.478 0.00 0.00 0.00 4.26
1959 5057 2.034558 GTCTGATAGAGACTCTGCTGCC 59.965 54.545 15.55 0.00 46.85 4.85
1982 5080 2.542020 TTTCATCAGTTGTCGGCAGA 57.458 45.000 0.00 0.00 0.00 4.26
2000 5098 4.321974 GGCAGACGATGGATTTTCCTTTTT 60.322 41.667 0.00 0.00 37.46 1.94
2160 5259 1.077005 ACTGCTTTATCCTTTGGCCCA 59.923 47.619 0.00 0.00 0.00 5.36
2161 5260 2.178580 CTGCTTTATCCTTTGGCCCAA 58.821 47.619 0.00 0.00 0.00 4.12
2185 5284 3.119708 GGACTGAAACACAAGATGGATGC 60.120 47.826 0.00 0.00 0.00 3.91
2195 5294 5.357878 ACACAAGATGGATGCACGAAATAAT 59.642 36.000 0.00 0.00 0.00 1.28
2218 5317 7.907214 ATTGTATTATATTCTTGAGGGTCGC 57.093 36.000 0.00 0.00 0.00 5.19
2219 5318 5.790593 TGTATTATATTCTTGAGGGTCGCC 58.209 41.667 0.00 0.00 0.00 5.54
2220 5319 3.380479 TTATATTCTTGAGGGTCGCCG 57.620 47.619 0.00 0.00 0.00 6.46
2221 5320 1.410004 ATATTCTTGAGGGTCGCCGA 58.590 50.000 0.00 0.00 0.00 5.54
2222 5321 1.410004 TATTCTTGAGGGTCGCCGAT 58.590 50.000 0.00 0.00 0.00 4.18
2223 5322 0.105039 ATTCTTGAGGGTCGCCGATC 59.895 55.000 0.00 0.00 0.00 3.69
2224 5323 0.970937 TTCTTGAGGGTCGCCGATCT 60.971 55.000 0.00 0.00 0.00 2.75
2225 5324 0.970937 TCTTGAGGGTCGCCGATCTT 60.971 55.000 0.00 0.00 0.00 2.40
2226 5325 0.108138 CTTGAGGGTCGCCGATCTTT 60.108 55.000 0.00 0.00 0.00 2.52
2227 5326 0.323629 TTGAGGGTCGCCGATCTTTT 59.676 50.000 0.00 0.00 0.00 2.27
2228 5327 0.391130 TGAGGGTCGCCGATCTTTTG 60.391 55.000 0.00 0.00 0.00 2.44
2229 5328 1.078426 AGGGTCGCCGATCTTTTGG 60.078 57.895 0.00 0.00 0.00 3.28
2230 5329 1.376812 GGGTCGCCGATCTTTTGGT 60.377 57.895 0.00 0.00 0.00 3.67
2231 5330 0.108041 GGGTCGCCGATCTTTTGGTA 60.108 55.000 0.00 0.00 0.00 3.25
2232 5331 1.004595 GGTCGCCGATCTTTTGGTAC 58.995 55.000 0.00 0.00 0.00 3.34
2233 5332 1.405121 GGTCGCCGATCTTTTGGTACT 60.405 52.381 0.00 0.00 0.00 2.73
2234 5333 1.925185 GTCGCCGATCTTTTGGTACTC 59.075 52.381 0.00 0.00 0.00 2.59
2235 5334 1.546923 TCGCCGATCTTTTGGTACTCA 59.453 47.619 0.00 0.00 0.00 3.41
2236 5335 2.028839 TCGCCGATCTTTTGGTACTCAA 60.029 45.455 0.00 0.00 0.00 3.02
2237 5336 2.348666 CGCCGATCTTTTGGTACTCAAG 59.651 50.000 0.00 0.00 36.62 3.02
2238 5337 2.678336 GCCGATCTTTTGGTACTCAAGG 59.322 50.000 0.00 0.00 36.62 3.61
2239 5338 3.270877 CCGATCTTTTGGTACTCAAGGG 58.729 50.000 0.00 0.00 36.62 3.95
2240 5339 2.678336 CGATCTTTTGGTACTCAAGGGC 59.322 50.000 0.00 0.00 36.62 5.19
2241 5340 3.686016 GATCTTTTGGTACTCAAGGGCA 58.314 45.455 0.00 0.00 36.62 5.36
2242 5341 3.586470 TCTTTTGGTACTCAAGGGCAA 57.414 42.857 0.00 0.00 36.62 4.52
2243 5342 4.112634 TCTTTTGGTACTCAAGGGCAAT 57.887 40.909 0.00 0.00 36.62 3.56
2244 5343 4.079253 TCTTTTGGTACTCAAGGGCAATC 58.921 43.478 0.00 0.00 36.62 2.67
2245 5344 2.507407 TTGGTACTCAAGGGCAATCC 57.493 50.000 0.00 0.00 0.00 3.01
2257 5356 2.749280 GGCAATCCCTTTCCAACTTG 57.251 50.000 0.00 0.00 0.00 3.16
2258 5357 1.338105 GGCAATCCCTTTCCAACTTGC 60.338 52.381 0.00 0.00 38.53 4.01
2259 5358 1.669795 GCAATCCCTTTCCAACTTGCG 60.670 52.381 0.00 0.00 30.96 4.85
2260 5359 1.067635 CAATCCCTTTCCAACTTGCGG 60.068 52.381 0.00 0.00 0.00 5.69
2261 5360 0.112412 ATCCCTTTCCAACTTGCGGT 59.888 50.000 0.00 0.00 0.00 5.68
2262 5361 0.106419 TCCCTTTCCAACTTGCGGTT 60.106 50.000 0.00 0.00 38.93 4.44
2263 5362 1.143277 TCCCTTTCCAACTTGCGGTTA 59.857 47.619 0.00 0.00 36.23 2.85
2264 5363 1.957877 CCCTTTCCAACTTGCGGTTAA 59.042 47.619 0.00 0.00 36.23 2.01
2265 5364 2.362717 CCCTTTCCAACTTGCGGTTAAA 59.637 45.455 0.00 0.00 36.23 1.52
2266 5365 3.377439 CCTTTCCAACTTGCGGTTAAAC 58.623 45.455 0.00 0.00 36.23 2.01
2267 5366 3.181485 CCTTTCCAACTTGCGGTTAAACA 60.181 43.478 0.00 0.00 36.23 2.83
2268 5367 4.425520 CTTTCCAACTTGCGGTTAAACAA 58.574 39.130 0.00 0.00 36.23 2.83
2269 5368 3.701532 TCCAACTTGCGGTTAAACAAG 57.298 42.857 10.88 10.88 46.91 3.16
2275 5374 4.400036 CTTGCGGTTAAACAAGTACTCC 57.600 45.455 0.00 0.00 38.75 3.85
2276 5375 2.769893 TGCGGTTAAACAAGTACTCCC 58.230 47.619 0.00 0.00 0.00 4.30
2277 5376 2.369532 TGCGGTTAAACAAGTACTCCCT 59.630 45.455 0.00 0.00 0.00 4.20
2278 5377 2.998670 GCGGTTAAACAAGTACTCCCTC 59.001 50.000 0.00 0.00 0.00 4.30
2279 5378 3.593096 CGGTTAAACAAGTACTCCCTCC 58.407 50.000 0.00 0.00 0.00 4.30
2280 5379 3.593096 GGTTAAACAAGTACTCCCTCCG 58.407 50.000 0.00 0.00 0.00 4.63
2281 5380 3.007290 GGTTAAACAAGTACTCCCTCCGT 59.993 47.826 0.00 0.00 0.00 4.69
2282 5381 4.240888 GTTAAACAAGTACTCCCTCCGTC 58.759 47.826 0.00 0.00 0.00 4.79
2283 5382 1.264295 AACAAGTACTCCCTCCGTCC 58.736 55.000 0.00 0.00 0.00 4.79
2284 5383 0.113776 ACAAGTACTCCCTCCGTCCA 59.886 55.000 0.00 0.00 0.00 4.02
2285 5384 1.263356 CAAGTACTCCCTCCGTCCAA 58.737 55.000 0.00 0.00 0.00 3.53
2286 5385 1.831736 CAAGTACTCCCTCCGTCCAAT 59.168 52.381 0.00 0.00 0.00 3.16
2287 5386 2.236395 CAAGTACTCCCTCCGTCCAATT 59.764 50.000 0.00 0.00 0.00 2.32
2288 5387 2.547990 AGTACTCCCTCCGTCCAATTT 58.452 47.619 0.00 0.00 0.00 1.82
2289 5388 2.910977 AGTACTCCCTCCGTCCAATTTT 59.089 45.455 0.00 0.00 0.00 1.82
2290 5389 4.098894 AGTACTCCCTCCGTCCAATTTTA 58.901 43.478 0.00 0.00 0.00 1.52
2291 5390 4.533311 AGTACTCCCTCCGTCCAATTTTAA 59.467 41.667 0.00 0.00 0.00 1.52
2292 5391 4.586306 ACTCCCTCCGTCCAATTTTAAT 57.414 40.909 0.00 0.00 0.00 1.40
2293 5392 4.930696 ACTCCCTCCGTCCAATTTTAATT 58.069 39.130 0.00 0.00 0.00 1.40
2294 5393 4.705023 ACTCCCTCCGTCCAATTTTAATTG 59.295 41.667 7.98 7.98 44.12 2.32
2295 5394 4.924625 TCCCTCCGTCCAATTTTAATTGA 58.075 39.130 15.02 1.37 46.72 2.57
2296 5395 4.703093 TCCCTCCGTCCAATTTTAATTGAC 59.297 41.667 15.02 10.52 46.72 3.18
2297 5396 4.438200 CCCTCCGTCCAATTTTAATTGACG 60.438 45.833 20.53 20.53 46.72 4.35
2298 5397 4.086199 TCCGTCCAATTTTAATTGACGC 57.914 40.909 21.29 10.94 46.72 5.19
2299 5398 3.754323 TCCGTCCAATTTTAATTGACGCT 59.246 39.130 21.29 0.00 46.72 5.07
2300 5399 4.095610 CCGTCCAATTTTAATTGACGCTC 58.904 43.478 21.29 8.43 46.72 5.03
2301 5400 4.378978 CCGTCCAATTTTAATTGACGCTCA 60.379 41.667 21.29 0.00 46.72 4.26
2302 5401 5.150683 CGTCCAATTTTAATTGACGCTCAA 58.849 37.500 15.02 3.49 46.72 3.02
2303 5402 5.627367 CGTCCAATTTTAATTGACGCTCAAA 59.373 36.000 15.02 0.00 46.72 2.69
2304 5403 6.307800 CGTCCAATTTTAATTGACGCTCAAAT 59.692 34.615 15.02 0.48 46.72 2.32
2305 5404 7.447430 GTCCAATTTTAATTGACGCTCAAATG 58.553 34.615 15.02 0.00 46.72 2.32
2306 5405 6.589523 TCCAATTTTAATTGACGCTCAAATGG 59.410 34.615 15.02 0.00 46.72 3.16
2307 5406 6.589523 CCAATTTTAATTGACGCTCAAATGGA 59.410 34.615 15.02 0.00 46.72 3.41
2308 5407 7.278424 CCAATTTTAATTGACGCTCAAATGGAT 59.722 33.333 15.02 0.00 46.72 3.41
2309 5408 7.760131 ATTTTAATTGACGCTCAAATGGATG 57.240 32.000 4.87 0.00 40.12 3.51
2310 5409 5.895636 TTAATTGACGCTCAAATGGATGT 57.104 34.783 4.87 0.00 40.12 3.06
2311 5410 6.993786 TTAATTGACGCTCAAATGGATGTA 57.006 33.333 4.87 0.00 40.12 2.29
2312 5411 7.566760 TTAATTGACGCTCAAATGGATGTAT 57.433 32.000 4.87 0.00 40.12 2.29
2313 5412 5.679734 ATTGACGCTCAAATGGATGTATC 57.320 39.130 4.87 0.00 40.12 2.24
2314 5413 4.406648 TGACGCTCAAATGGATGTATCT 57.593 40.909 0.00 0.00 0.00 1.98
2315 5414 5.529581 TGACGCTCAAATGGATGTATCTA 57.470 39.130 0.00 0.00 0.00 1.98
2316 5415 5.532557 TGACGCTCAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 0.00 2.43
2317 5416 5.301805 TGACGCTCAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 0.00 2.43
2318 5417 6.161855 ACGCTCAAATGGATGTATCTAGAA 57.838 37.500 0.00 0.00 0.00 2.10
2319 5418 5.986135 ACGCTCAAATGGATGTATCTAGAAC 59.014 40.000 0.00 0.00 0.00 3.01
2320 5419 5.117745 CGCTCAAATGGATGTATCTAGAACG 59.882 44.000 0.00 0.00 0.00 3.95
2321 5420 5.107298 GCTCAAATGGATGTATCTAGAACGC 60.107 44.000 0.00 0.00 0.00 4.84
2322 5421 4.982295 TCAAATGGATGTATCTAGAACGCG 59.018 41.667 3.53 3.53 0.00 6.01
2323 5422 4.848562 AATGGATGTATCTAGAACGCGA 57.151 40.909 15.93 0.00 0.00 5.87
2324 5423 3.898517 TGGATGTATCTAGAACGCGAG 57.101 47.619 15.93 0.00 0.00 5.03
2325 5424 2.552743 TGGATGTATCTAGAACGCGAGG 59.447 50.000 15.93 0.00 0.00 4.63
2326 5425 2.812591 GGATGTATCTAGAACGCGAGGA 59.187 50.000 15.93 3.28 0.00 3.71
2327 5426 3.252701 GGATGTATCTAGAACGCGAGGAA 59.747 47.826 15.93 0.00 0.00 3.36
2328 5427 3.965292 TGTATCTAGAACGCGAGGAAG 57.035 47.619 15.93 4.93 0.00 3.46
2329 5428 3.276857 TGTATCTAGAACGCGAGGAAGT 58.723 45.455 15.93 0.00 0.00 3.01
2330 5429 4.445453 TGTATCTAGAACGCGAGGAAGTA 58.555 43.478 15.93 0.00 0.00 2.24
2331 5430 4.510711 TGTATCTAGAACGCGAGGAAGTAG 59.489 45.833 15.93 4.78 0.00 2.57
2332 5431 2.983229 TCTAGAACGCGAGGAAGTAGT 58.017 47.619 15.93 0.00 0.00 2.73
2333 5432 4.128925 TCTAGAACGCGAGGAAGTAGTA 57.871 45.455 15.93 0.00 0.00 1.82
2334 5433 4.701765 TCTAGAACGCGAGGAAGTAGTAT 58.298 43.478 15.93 0.00 0.00 2.12
2335 5434 5.121811 TCTAGAACGCGAGGAAGTAGTATT 58.878 41.667 15.93 0.00 0.00 1.89
2336 5435 4.715527 AGAACGCGAGGAAGTAGTATTT 57.284 40.909 15.93 0.00 0.00 1.40
2337 5436 4.421948 AGAACGCGAGGAAGTAGTATTTG 58.578 43.478 15.93 0.00 0.00 2.32
2338 5437 4.157289 AGAACGCGAGGAAGTAGTATTTGA 59.843 41.667 15.93 0.00 0.00 2.69
2339 5438 4.030134 ACGCGAGGAAGTAGTATTTGAG 57.970 45.455 15.93 0.00 0.00 3.02
2340 5439 3.442977 ACGCGAGGAAGTAGTATTTGAGT 59.557 43.478 15.93 0.00 0.00 3.41
2341 5440 4.637534 ACGCGAGGAAGTAGTATTTGAGTA 59.362 41.667 15.93 0.00 0.00 2.59
2342 5441 5.298777 ACGCGAGGAAGTAGTATTTGAGTAT 59.701 40.000 15.93 0.00 0.00 2.12
2343 5442 5.625721 CGCGAGGAAGTAGTATTTGAGTATG 59.374 44.000 0.00 0.00 0.00 2.39
2344 5443 6.512903 CGCGAGGAAGTAGTATTTGAGTATGA 60.513 42.308 0.00 0.00 0.00 2.15
2345 5444 7.201145 GCGAGGAAGTAGTATTTGAGTATGAA 58.799 38.462 0.00 0.00 0.00 2.57
2346 5445 7.705325 GCGAGGAAGTAGTATTTGAGTATGAAA 59.295 37.037 0.00 0.00 0.00 2.69
2347 5446 9.751542 CGAGGAAGTAGTATTTGAGTATGAAAT 57.248 33.333 0.00 0.00 35.63 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 5.541868 TCCTTTTTATGGTCATTGCCTCAAA 59.458 36.000 0.00 0.00 0.00 2.69
28 29 4.678840 GCAACAGCTCCATCCTTTTTATGG 60.679 45.833 0.00 0.00 44.51 2.74
50 51 2.163815 AGTCAATCAATGAGCAAGCAGC 59.836 45.455 0.00 0.00 39.19 5.25
64 65 5.803020 ATTTGCGAAGGAAGTAGTCAATC 57.197 39.130 0.00 0.00 40.30 2.67
71 72 6.374053 TGATGATTGAATTTGCGAAGGAAGTA 59.626 34.615 0.00 0.00 40.30 2.24
72 73 5.183713 TGATGATTGAATTTGCGAAGGAAGT 59.816 36.000 0.00 0.00 40.30 3.01
98 102 1.098050 GTGAACATGGAGGGTGCATC 58.902 55.000 0.00 0.00 0.00 3.91
100 104 0.405198 ATGTGAACATGGAGGGTGCA 59.595 50.000 0.00 0.00 34.83 4.57
125 129 2.951745 GATGAGGTCAGTCGCGCG 60.952 66.667 26.76 26.76 0.00 6.86
151 155 9.834628 TTTGATTTAACTTTCATACCTTTAGCG 57.165 29.630 0.00 0.00 0.00 4.26
196 200 9.167311 GAGAACTGATTTAACACATTGACCTAT 57.833 33.333 0.00 0.00 0.00 2.57
214 218 7.122204 TCGATGGATACTAAAAGTGAGAACTGA 59.878 37.037 0.00 0.00 37.61 3.41
247 251 6.839124 AATTGATCACTGCCAAATTCTACA 57.161 33.333 0.00 0.00 0.00 2.74
324 329 3.278367 CAACAGGTGCATCAAACTCTG 57.722 47.619 0.00 0.00 0.00 3.35
347 352 2.019984 GCTCTCCCCAAATACAGCAAG 58.980 52.381 0.00 0.00 0.00 4.01
364 369 3.232213 TCGACCACTGAAGTATTGCTC 57.768 47.619 0.00 0.00 0.00 4.26
366 371 3.125316 CCTTTCGACCACTGAAGTATTGC 59.875 47.826 0.00 0.00 0.00 3.56
373 378 1.001633 GTAGCCCTTTCGACCACTGAA 59.998 52.381 0.00 0.00 0.00 3.02
409 418 3.505464 AGTAATTCCGAACGGAGTGAG 57.495 47.619 15.34 0.00 45.00 3.51
410 419 3.006110 ACAAGTAATTCCGAACGGAGTGA 59.994 43.478 15.34 3.95 45.00 3.41
411 420 3.323243 ACAAGTAATTCCGAACGGAGTG 58.677 45.455 15.34 10.42 45.00 3.51
413 422 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
414 423 3.947910 AGACAAGTAATTCCGAACGGA 57.052 42.857 12.04 12.04 43.52 4.69
415 424 3.124636 CCAAGACAAGTAATTCCGAACGG 59.875 47.826 6.94 6.94 0.00 4.44
416 425 3.991773 TCCAAGACAAGTAATTCCGAACG 59.008 43.478 0.00 0.00 0.00 3.95
417 426 5.934935 TTCCAAGACAAGTAATTCCGAAC 57.065 39.130 0.00 0.00 0.00 3.95
418 427 6.072175 CCATTTCCAAGACAAGTAATTCCGAA 60.072 38.462 0.00 0.00 0.00 4.30
419 428 5.414454 CCATTTCCAAGACAAGTAATTCCGA 59.586 40.000 0.00 0.00 0.00 4.55
420 429 5.414454 TCCATTTCCAAGACAAGTAATTCCG 59.586 40.000 0.00 0.00 0.00 4.30
421 430 6.834168 TCCATTTCCAAGACAAGTAATTCC 57.166 37.500 0.00 0.00 0.00 3.01
422 431 7.830739 ACATCCATTTCCAAGACAAGTAATTC 58.169 34.615 0.00 0.00 0.00 2.17
423 432 7.781324 ACATCCATTTCCAAGACAAGTAATT 57.219 32.000 0.00 0.00 0.00 1.40
424 433 9.125026 GATACATCCATTTCCAAGACAAGTAAT 57.875 33.333 0.00 0.00 0.00 1.89
425 434 8.328758 AGATACATCCATTTCCAAGACAAGTAA 58.671 33.333 0.00 0.00 0.00 2.24
426 435 7.861629 AGATACATCCATTTCCAAGACAAGTA 58.138 34.615 0.00 0.00 0.00 2.24
427 436 6.725364 AGATACATCCATTTCCAAGACAAGT 58.275 36.000 0.00 0.00 0.00 3.16
428 437 8.206867 TCTAGATACATCCATTTCCAAGACAAG 58.793 37.037 0.00 0.00 0.00 3.16
429 438 8.089625 TCTAGATACATCCATTTCCAAGACAA 57.910 34.615 0.00 0.00 0.00 3.18
430 439 7.675161 TCTAGATACATCCATTTCCAAGACA 57.325 36.000 0.00 0.00 0.00 3.41
431 440 8.207545 AGTTCTAGATACATCCATTTCCAAGAC 58.792 37.037 0.00 0.00 0.00 3.01
432 441 8.324191 AGTTCTAGATACATCCATTTCCAAGA 57.676 34.615 0.00 0.00 0.00 3.02
461 470 9.794685 CGCAGAAATACATGTATCTAGACATAT 57.205 33.333 18.52 0.00 37.99 1.78
462 471 9.010029 TCGCAGAAATACATGTATCTAGACATA 57.990 33.333 18.52 0.00 37.99 2.29
463 472 7.810282 GTCGCAGAAATACATGTATCTAGACAT 59.190 37.037 18.52 0.00 38.49 3.06
464 473 7.139392 GTCGCAGAAATACATGTATCTAGACA 58.861 38.462 18.52 0.00 39.69 3.41
465 474 7.139392 TGTCGCAGAAATACATGTATCTAGAC 58.861 38.462 18.52 20.89 39.69 2.59
466 475 7.272037 TGTCGCAGAAATACATGTATCTAGA 57.728 36.000 18.52 12.43 39.69 2.43
467 476 7.649705 ACTTGTCGCAGAAATACATGTATCTAG 59.350 37.037 18.52 11.42 39.69 2.43
468 477 7.489160 ACTTGTCGCAGAAATACATGTATCTA 58.511 34.615 18.52 0.00 39.69 1.98
469 478 6.341316 ACTTGTCGCAGAAATACATGTATCT 58.659 36.000 18.52 10.68 39.69 1.98
470 479 6.589830 ACTTGTCGCAGAAATACATGTATC 57.410 37.500 18.52 8.49 39.69 2.24
471 480 8.662781 ATTACTTGTCGCAGAAATACATGTAT 57.337 30.769 12.75 12.75 39.69 2.29
472 481 8.487313 AATTACTTGTCGCAGAAATACATGTA 57.513 30.769 8.27 8.27 39.69 2.29
473 482 6.985188 ATTACTTGTCGCAGAAATACATGT 57.015 33.333 2.69 2.69 39.69 3.21
474 483 6.907212 GGAATTACTTGTCGCAGAAATACATG 59.093 38.462 0.00 0.00 39.69 3.21
475 484 6.238103 CGGAATTACTTGTCGCAGAAATACAT 60.238 38.462 0.00 0.00 39.69 2.29
476 485 5.062934 CGGAATTACTTGTCGCAGAAATACA 59.937 40.000 0.00 0.00 39.69 2.29
477 486 5.290158 TCGGAATTACTTGTCGCAGAAATAC 59.710 40.000 0.00 0.00 39.69 1.89
478 487 5.412640 TCGGAATTACTTGTCGCAGAAATA 58.587 37.500 0.00 0.00 39.69 1.40
479 488 4.250464 TCGGAATTACTTGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
480 489 3.655486 TCGGAATTACTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
481 490 3.306917 TCGGAATTACTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
482 491 2.991190 GTTCGGAATTACTTGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
483 492 2.222508 CGTTCGGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
484 493 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
485 494 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
486 495 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
487 496 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
488 497 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
489 498 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
490 499 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
491 500 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
492 501 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
493 502 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
494 503 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
495 504 2.083628 ATACTCCCTCCGTTCGGAAT 57.916 50.000 14.79 2.14 33.41 3.01
496 505 2.734755 TATACTCCCTCCGTTCGGAA 57.265 50.000 14.79 0.00 33.41 4.30
497 506 2.965671 ATATACTCCCTCCGTTCGGA 57.034 50.000 13.34 13.34 0.00 4.55
498 507 4.279169 TGTTTATATACTCCCTCCGTTCGG 59.721 45.833 4.74 4.74 0.00 4.30
499 508 5.443185 TGTTTATATACTCCCTCCGTTCG 57.557 43.478 0.00 0.00 0.00 3.95
500 509 6.183360 ACCTTGTTTATATACTCCCTCCGTTC 60.183 42.308 0.00 0.00 0.00 3.95
501 510 5.664457 ACCTTGTTTATATACTCCCTCCGTT 59.336 40.000 0.00 0.00 0.00 4.44
502 511 5.214293 ACCTTGTTTATATACTCCCTCCGT 58.786 41.667 0.00 0.00 0.00 4.69
503 512 5.803237 ACCTTGTTTATATACTCCCTCCG 57.197 43.478 0.00 0.00 0.00 4.63
504 513 7.508296 TCACTACCTTGTTTATATACTCCCTCC 59.492 40.741 0.00 0.00 0.00 4.30
505 514 8.474710 TCACTACCTTGTTTATATACTCCCTC 57.525 38.462 0.00 0.00 0.00 4.30
506 515 9.091220 GATCACTACCTTGTTTATATACTCCCT 57.909 37.037 0.00 0.00 0.00 4.20
507 516 8.867097 TGATCACTACCTTGTTTATATACTCCC 58.133 37.037 0.00 0.00 0.00 4.30
508 517 9.915629 CTGATCACTACCTTGTTTATATACTCC 57.084 37.037 0.00 0.00 0.00 3.85
509 518 9.413048 GCTGATCACTACCTTGTTTATATACTC 57.587 37.037 0.00 0.00 0.00 2.59
510 519 9.148879 AGCTGATCACTACCTTGTTTATATACT 57.851 33.333 0.00 0.00 0.00 2.12
511 520 9.413048 GAGCTGATCACTACCTTGTTTATATAC 57.587 37.037 0.00 0.00 0.00 1.47
512 521 8.297426 CGAGCTGATCACTACCTTGTTTATATA 58.703 37.037 0.00 0.00 0.00 0.86
513 522 7.148641 CGAGCTGATCACTACCTTGTTTATAT 58.851 38.462 0.00 0.00 0.00 0.86
518 527 2.093973 CCGAGCTGATCACTACCTTGTT 60.094 50.000 0.00 0.00 0.00 2.83
522 531 1.686355 CTCCGAGCTGATCACTACCT 58.314 55.000 0.00 0.00 0.00 3.08
538 547 1.837499 CGGTATGACCCCTCCCTCC 60.837 68.421 0.00 0.00 33.75 4.30
542 584 0.250338 GAATGCGGTATGACCCCTCC 60.250 60.000 0.00 0.00 33.75 4.30
546 588 1.228154 GGGGAATGCGGTATGACCC 60.228 63.158 11.23 11.23 33.75 4.46
558 600 2.104622 CACCAAACTTTTGCAGGGGAAT 59.895 45.455 0.00 0.00 36.86 3.01
561 603 0.829990 ACACCAAACTTTTGCAGGGG 59.170 50.000 0.00 0.00 36.86 4.79
565 607 5.009610 GGAGAAGATACACCAAACTTTTGCA 59.990 40.000 0.00 0.00 36.86 4.08
571 613 2.904434 ACCGGAGAAGATACACCAAACT 59.096 45.455 9.46 0.00 0.00 2.66
572 614 3.329929 ACCGGAGAAGATACACCAAAC 57.670 47.619 9.46 0.00 0.00 2.93
578 620 2.004583 CGCAAACCGGAGAAGATACA 57.995 50.000 9.46 0.00 0.00 2.29
598 640 2.159693 GCGGTTCGAACTTGATTTCTCC 60.160 50.000 26.32 6.17 0.00 3.71
599 641 2.159693 GGCGGTTCGAACTTGATTTCTC 60.160 50.000 26.32 6.78 0.00 2.87
601 643 1.135774 GGGCGGTTCGAACTTGATTTC 60.136 52.381 26.32 8.18 0.00 2.17
606 648 3.419759 CGGGGCGGTTCGAACTTG 61.420 66.667 26.32 19.67 0.00 3.16
608 650 3.366739 GATCGGGGCGGTTCGAACT 62.367 63.158 26.32 5.18 38.92 3.01
609 651 2.889018 GATCGGGGCGGTTCGAAC 60.889 66.667 20.14 20.14 38.92 3.95
611 653 3.383681 TTGATCGGGGCGGTTCGA 61.384 61.111 0.00 0.00 39.79 3.71
613 655 3.192922 CGTTGATCGGGGCGGTTC 61.193 66.667 0.00 0.00 35.71 3.62
614 656 3.540367 AACGTTGATCGGGGCGGTT 62.540 57.895 0.00 0.00 44.69 4.44
622 664 1.086696 AAGGCATCCAACGTTGATCG 58.913 50.000 29.35 16.57 46.00 3.69
627 682 3.686016 ACTATGAAAGGCATCCAACGTT 58.314 40.909 0.00 0.00 38.44 3.99
629 684 3.689161 TGAACTATGAAAGGCATCCAACG 59.311 43.478 0.00 0.00 38.44 4.10
638 693 4.143030 CGCAACTGTCTGAACTATGAAAGG 60.143 45.833 0.00 0.00 0.00 3.11
644 699 1.899814 TCCCGCAACTGTCTGAACTAT 59.100 47.619 0.00 0.00 0.00 2.12
646 701 0.034059 CTCCCGCAACTGTCTGAACT 59.966 55.000 0.00 0.00 0.00 3.01
647 702 0.951040 CCTCCCGCAACTGTCTGAAC 60.951 60.000 0.00 0.00 0.00 3.18
648 703 1.371183 CCTCCCGCAACTGTCTGAA 59.629 57.895 0.00 0.00 0.00 3.02
650 705 0.535102 AAACCTCCCGCAACTGTCTG 60.535 55.000 0.00 0.00 0.00 3.51
651 706 0.535102 CAAACCTCCCGCAACTGTCT 60.535 55.000 0.00 0.00 0.00 3.41
652 707 0.534203 TCAAACCTCCCGCAACTGTC 60.534 55.000 0.00 0.00 0.00 3.51
654 709 1.237285 CCTCAAACCTCCCGCAACTG 61.237 60.000 0.00 0.00 0.00 3.16
655 710 1.073199 CCTCAAACCTCCCGCAACT 59.927 57.895 0.00 0.00 0.00 3.16
663 718 0.868406 CAACGCAGACCTCAAACCTC 59.132 55.000 0.00 0.00 0.00 3.85
666 721 0.868406 CTCCAACGCAGACCTCAAAC 59.132 55.000 0.00 0.00 0.00 2.93
671 726 1.078848 GCATCTCCAACGCAGACCT 60.079 57.895 0.00 0.00 0.00 3.85
673 728 1.089920 AATGCATCTCCAACGCAGAC 58.910 50.000 0.00 0.00 39.39 3.51
674 729 2.689553 TAATGCATCTCCAACGCAGA 57.310 45.000 0.00 0.00 39.39 4.26
675 730 3.976793 ATTAATGCATCTCCAACGCAG 57.023 42.857 0.00 0.00 39.39 5.18
676 731 5.356751 AGTTTATTAATGCATCTCCAACGCA 59.643 36.000 0.00 0.00 40.50 5.24
683 739 7.320443 TCCACACAGTTTATTAATGCATCTC 57.680 36.000 0.00 0.00 0.00 2.75
693 749 9.077885 ACAAAGACATTATCCACACAGTTTATT 57.922 29.630 0.00 0.00 0.00 1.40
718 774 3.243267 ACAGTACGCCAATTTGGAAACAC 60.243 43.478 19.76 10.03 40.96 3.32
730 786 0.241749 AATCGTTCGACAGTACGCCA 59.758 50.000 2.54 0.00 40.28 5.69
779 835 5.221185 GGTTTACTGTTTTCCTTCCTTGTCC 60.221 44.000 0.00 0.00 0.00 4.02
1027 1085 4.410400 GAGGAGGGGCAACACCGG 62.410 72.222 0.00 0.00 46.76 5.28
1028 1086 4.410400 GGAGGAGGGGCAACACCG 62.410 72.222 0.00 0.00 46.76 4.94
1029 1087 2.936032 AGGAGGAGGGGCAACACC 60.936 66.667 0.00 0.00 46.76 4.16
1030 1088 2.671682 GAGGAGGAGGGGCAACAC 59.328 66.667 0.00 0.00 44.66 3.32
1031 1089 2.610859 GGAGGAGGAGGGGCAACA 60.611 66.667 0.00 0.00 39.74 3.33
1032 1090 2.285743 AGGAGGAGGAGGGGCAAC 60.286 66.667 0.00 0.00 0.00 4.17
1033 1091 2.285668 CAGGAGGAGGAGGGGCAA 60.286 66.667 0.00 0.00 0.00 4.52
1035 1093 4.814041 AGCAGGAGGAGGAGGGGC 62.814 72.222 0.00 0.00 0.00 5.80
1039 1097 2.901813 CAGCAGCAGGAGGAGGAG 59.098 66.667 0.00 0.00 0.00 3.69
1041 1099 3.400928 AGCAGCAGCAGGAGGAGG 61.401 66.667 3.17 0.00 45.49 4.30
1105 1178 2.423803 CCATGTCCATGTCCATGTCCAT 60.424 50.000 16.31 5.17 37.37 3.41
1353 2840 4.247267 ACTTTGGCAATCAATCACAGTG 57.753 40.909 0.00 0.00 34.98 3.66
1359 2852 2.997986 CCAGCAACTTTGGCAATCAATC 59.002 45.455 0.00 0.00 34.98 2.67
1395 2888 1.750206 ACACACACAAAATGAGCAGCA 59.250 42.857 0.00 0.00 0.00 4.41
1431 2924 3.077359 GCAAAATGCTCCACTCACTACT 58.923 45.455 0.00 0.00 40.96 2.57
1577 4564 8.278639 TCAATTACACACCATATAATCCAGGTT 58.721 33.333 0.00 0.00 30.44 3.50
1578 4565 7.811282 TCAATTACACACCATATAATCCAGGT 58.189 34.615 0.00 0.00 33.91 4.00
1579 4566 8.868522 ATCAATTACACACCATATAATCCAGG 57.131 34.615 0.00 0.00 0.00 4.45
1580 4567 8.950210 GGATCAATTACACACCATATAATCCAG 58.050 37.037 0.00 0.00 0.00 3.86
1582 4569 8.862325 TGGATCAATTACACACCATATAATCC 57.138 34.615 0.00 0.00 0.00 3.01
1585 4572 8.490311 TGTCTGGATCAATTACACACCATATAA 58.510 33.333 0.00 0.00 0.00 0.98
1586 4573 8.028652 TGTCTGGATCAATTACACACCATATA 57.971 34.615 0.00 0.00 0.00 0.86
1587 4574 6.899089 TGTCTGGATCAATTACACACCATAT 58.101 36.000 0.00 0.00 0.00 1.78
1589 4576 5.178096 TGTCTGGATCAATTACACACCAT 57.822 39.130 0.00 0.00 0.00 3.55
1590 4577 4.565444 CCTGTCTGGATCAATTACACACCA 60.565 45.833 0.00 0.00 38.35 4.17
1591 4578 3.941483 CCTGTCTGGATCAATTACACACC 59.059 47.826 0.00 0.00 38.35 4.16
1592 4579 3.941483 CCCTGTCTGGATCAATTACACAC 59.059 47.826 0.00 0.00 38.35 3.82
1599 4605 1.637553 ACAAGCCCTGTCTGGATCAAT 59.362 47.619 0.00 0.00 38.35 2.57
1601 4607 1.067295 AACAAGCCCTGTCTGGATCA 58.933 50.000 0.00 0.00 37.23 2.92
1641 4660 5.509498 ACTGACCCAGCAATAAACATACAT 58.491 37.500 0.00 0.00 34.37 2.29
1651 4673 1.656587 TCACCTACTGACCCAGCAAT 58.343 50.000 0.00 0.00 34.37 3.56
1681 4705 2.355197 TGCATTATTCACCCGTCAGTG 58.645 47.619 0.00 0.00 39.20 3.66
1690 4714 3.057315 CGGGAATGGGATGCATTATTCAC 60.057 47.826 22.60 20.22 32.57 3.18
1700 4724 0.322975 CTCCTAGCGGGAATGGGATG 59.677 60.000 3.27 0.00 44.58 3.51
1707 4731 1.041447 GTAGTGCCTCCTAGCGGGAA 61.041 60.000 3.27 0.00 44.58 3.97
1708 4732 1.455217 GTAGTGCCTCCTAGCGGGA 60.455 63.158 3.77 1.75 42.77 5.14
1710 4734 0.752009 TCAGTAGTGCCTCCTAGCGG 60.752 60.000 0.00 0.00 34.65 5.52
1711 4735 1.103803 TTCAGTAGTGCCTCCTAGCG 58.896 55.000 0.00 0.00 34.65 4.26
1713 4737 3.677424 GCAAGTTCAGTAGTGCCTCCTAG 60.677 52.174 0.00 0.00 0.00 3.02
1737 4763 2.380081 GCTTCAGCATTGCCATTGC 58.620 52.632 4.70 3.42 41.59 3.56
1772 4798 6.619801 ATTGGAAACTAGTGACAGTTTGTC 57.380 37.500 14.64 2.34 46.23 3.18
1794 4856 7.168637 GCATTCATTCATAATTCAGCAACGAAT 59.831 33.333 0.00 0.00 37.20 3.34
1847 4938 0.798771 GAGCGACGGCGATATCATCC 60.799 60.000 18.90 0.00 46.35 3.51
1885 4980 2.086869 CTGTGGGTAGCACCATCAAAG 58.913 52.381 7.49 0.00 43.59 2.77
1902 5000 3.844211 TGTTAATCCTAGAACCCAGCTGT 59.156 43.478 13.81 0.00 0.00 4.40
1920 5018 0.398696 ACACAACCGGGCAGATGTTA 59.601 50.000 6.32 0.00 0.00 2.41
1929 5027 2.100197 TCTCTATCAGACACAACCGGG 58.900 52.381 6.32 0.00 0.00 5.73
1959 5057 1.062587 GCCGACAACTGATGAAATCCG 59.937 52.381 0.00 0.00 44.73 4.18
2010 5108 3.414700 CCGACGGCAGTGTCAAGC 61.415 66.667 0.00 0.00 38.84 4.01
2011 5109 1.284982 CTTCCGACGGCAGTGTCAAG 61.285 60.000 9.66 1.65 38.84 3.02
2024 5123 0.874390 GCACTGCAATCAACTTCCGA 59.126 50.000 0.00 0.00 0.00 4.55
2025 5124 0.592637 TGCACTGCAATCAACTTCCG 59.407 50.000 0.00 0.00 34.76 4.30
2160 5259 4.792068 TCCATCTTGTGTTTCAGTCCTTT 58.208 39.130 0.00 0.00 0.00 3.11
2161 5260 4.437682 TCCATCTTGTGTTTCAGTCCTT 57.562 40.909 0.00 0.00 0.00 3.36
2164 5263 3.503363 TGCATCCATCTTGTGTTTCAGTC 59.497 43.478 0.00 0.00 0.00 3.51
2195 5294 6.228258 GGCGACCCTCAAGAATATAATACAA 58.772 40.000 0.00 0.00 0.00 2.41
2203 5302 1.340248 GATCGGCGACCCTCAAGAATA 59.660 52.381 13.76 0.00 0.00 1.75
2204 5303 0.105039 GATCGGCGACCCTCAAGAAT 59.895 55.000 13.76 0.00 0.00 2.40
2205 5304 0.970937 AGATCGGCGACCCTCAAGAA 60.971 55.000 13.76 0.00 0.00 2.52
2206 5305 0.970937 AAGATCGGCGACCCTCAAGA 60.971 55.000 13.76 0.00 0.00 3.02
2207 5306 0.108138 AAAGATCGGCGACCCTCAAG 60.108 55.000 13.76 0.00 0.00 3.02
2208 5307 0.323629 AAAAGATCGGCGACCCTCAA 59.676 50.000 13.76 0.00 0.00 3.02
2209 5308 0.391130 CAAAAGATCGGCGACCCTCA 60.391 55.000 13.76 0.00 0.00 3.86
2210 5309 1.090052 CCAAAAGATCGGCGACCCTC 61.090 60.000 13.76 6.26 0.00 4.30
2211 5310 1.078426 CCAAAAGATCGGCGACCCT 60.078 57.895 13.76 10.06 0.00 4.34
2212 5311 0.108041 TACCAAAAGATCGGCGACCC 60.108 55.000 13.76 7.47 0.00 4.46
2213 5312 1.004595 GTACCAAAAGATCGGCGACC 58.995 55.000 13.76 0.24 0.00 4.79
2214 5313 1.925185 GAGTACCAAAAGATCGGCGAC 59.075 52.381 13.76 6.55 0.00 5.19
2215 5314 1.546923 TGAGTACCAAAAGATCGGCGA 59.453 47.619 13.87 13.87 0.00 5.54
2216 5315 2.004583 TGAGTACCAAAAGATCGGCG 57.995 50.000 0.00 0.00 0.00 6.46
2217 5316 2.678336 CCTTGAGTACCAAAAGATCGGC 59.322 50.000 0.00 0.00 33.76 5.54
2218 5317 3.270877 CCCTTGAGTACCAAAAGATCGG 58.729 50.000 0.00 0.00 33.76 4.18
2219 5318 2.678336 GCCCTTGAGTACCAAAAGATCG 59.322 50.000 0.00 0.00 33.76 3.69
2220 5319 3.686016 TGCCCTTGAGTACCAAAAGATC 58.314 45.455 0.00 0.00 33.76 2.75
2221 5320 3.806949 TGCCCTTGAGTACCAAAAGAT 57.193 42.857 0.00 0.00 33.76 2.40
2222 5321 3.586470 TTGCCCTTGAGTACCAAAAGA 57.414 42.857 0.00 0.00 33.76 2.52
2223 5322 3.193479 GGATTGCCCTTGAGTACCAAAAG 59.807 47.826 0.00 0.00 33.76 2.27
2224 5323 3.161866 GGATTGCCCTTGAGTACCAAAA 58.838 45.455 0.00 0.00 33.76 2.44
2225 5324 2.802719 GGATTGCCCTTGAGTACCAAA 58.197 47.619 0.00 0.00 33.76 3.28
2226 5325 2.507407 GGATTGCCCTTGAGTACCAA 57.493 50.000 0.00 0.00 0.00 3.67
2238 5337 1.338105 GCAAGTTGGAAAGGGATTGCC 60.338 52.381 4.75 0.00 37.62 4.52
2239 5338 1.669795 CGCAAGTTGGAAAGGGATTGC 60.670 52.381 4.75 0.00 39.62 3.56
2240 5339 1.067635 CCGCAAGTTGGAAAGGGATTG 60.068 52.381 4.75 0.00 0.00 2.67
2241 5340 1.256812 CCGCAAGTTGGAAAGGGATT 58.743 50.000 4.75 0.00 0.00 3.01
2242 5341 0.112412 ACCGCAAGTTGGAAAGGGAT 59.888 50.000 4.75 0.00 0.00 3.85
2243 5342 0.106419 AACCGCAAGTTGGAAAGGGA 60.106 50.000 4.75 0.00 37.29 4.20
2244 5343 1.611519 TAACCGCAAGTTGGAAAGGG 58.388 50.000 4.75 0.00 39.67 3.95
2245 5344 3.181485 TGTTTAACCGCAAGTTGGAAAGG 60.181 43.478 4.75 0.00 39.67 3.11
2246 5345 4.035278 TGTTTAACCGCAAGTTGGAAAG 57.965 40.909 4.75 0.00 39.67 2.62
2247 5346 4.425520 CTTGTTTAACCGCAAGTTGGAAA 58.574 39.130 4.75 0.00 39.67 3.13
2248 5347 4.035278 CTTGTTTAACCGCAAGTTGGAA 57.965 40.909 4.75 0.00 39.67 3.53
2249 5348 3.701532 CTTGTTTAACCGCAAGTTGGA 57.298 42.857 4.75 0.00 39.67 3.53
2254 5353 3.187842 GGGAGTACTTGTTTAACCGCAAG 59.812 47.826 0.00 10.36 45.33 4.01
2255 5354 3.140623 GGGAGTACTTGTTTAACCGCAA 58.859 45.455 0.00 0.00 0.00 4.85
2256 5355 2.369532 AGGGAGTACTTGTTTAACCGCA 59.630 45.455 0.00 0.00 0.00 5.69
2257 5356 2.998670 GAGGGAGTACTTGTTTAACCGC 59.001 50.000 0.00 0.00 0.00 5.68
2258 5357 3.593096 GGAGGGAGTACTTGTTTAACCG 58.407 50.000 0.00 0.00 0.00 4.44
2259 5358 3.007290 ACGGAGGGAGTACTTGTTTAACC 59.993 47.826 0.00 0.00 0.00 2.85
2260 5359 4.240888 GACGGAGGGAGTACTTGTTTAAC 58.759 47.826 0.00 0.00 0.00 2.01
2261 5360 3.259123 GGACGGAGGGAGTACTTGTTTAA 59.741 47.826 0.00 0.00 0.00 1.52
2262 5361 2.827921 GGACGGAGGGAGTACTTGTTTA 59.172 50.000 0.00 0.00 0.00 2.01
2263 5362 1.622312 GGACGGAGGGAGTACTTGTTT 59.378 52.381 0.00 0.00 0.00 2.83
2264 5363 1.264295 GGACGGAGGGAGTACTTGTT 58.736 55.000 0.00 0.00 0.00 2.83
2265 5364 0.113776 TGGACGGAGGGAGTACTTGT 59.886 55.000 0.00 0.00 0.00 3.16
2266 5365 1.263356 TTGGACGGAGGGAGTACTTG 58.737 55.000 0.00 0.00 0.00 3.16
2267 5366 2.249309 ATTGGACGGAGGGAGTACTT 57.751 50.000 0.00 0.00 0.00 2.24
2268 5367 2.249309 AATTGGACGGAGGGAGTACT 57.751 50.000 0.00 0.00 0.00 2.73
2269 5368 3.345508 AAAATTGGACGGAGGGAGTAC 57.654 47.619 0.00 0.00 0.00 2.73
2270 5369 5.703730 ATTAAAATTGGACGGAGGGAGTA 57.296 39.130 0.00 0.00 0.00 2.59
2271 5370 4.586306 ATTAAAATTGGACGGAGGGAGT 57.414 40.909 0.00 0.00 0.00 3.85
2272 5371 4.947388 TCAATTAAAATTGGACGGAGGGAG 59.053 41.667 13.89 0.00 44.51 4.30
2273 5372 4.703093 GTCAATTAAAATTGGACGGAGGGA 59.297 41.667 13.89 0.00 44.51 4.20
2274 5373 4.438200 CGTCAATTAAAATTGGACGGAGGG 60.438 45.833 20.42 5.12 44.51 4.30
2275 5374 4.658071 CGTCAATTAAAATTGGACGGAGG 58.342 43.478 20.42 6.19 44.51 4.30
2276 5375 4.095610 GCGTCAATTAAAATTGGACGGAG 58.904 43.478 24.62 11.52 44.51 4.63
2277 5376 3.754323 AGCGTCAATTAAAATTGGACGGA 59.246 39.130 24.62 6.28 44.51 4.69
2278 5377 4.091453 AGCGTCAATTAAAATTGGACGG 57.909 40.909 24.62 15.31 44.51 4.79
2279 5378 4.717991 TGAGCGTCAATTAAAATTGGACG 58.282 39.130 22.10 22.10 44.51 4.79
2280 5379 7.411804 CCATTTGAGCGTCAATTAAAATTGGAC 60.412 37.037 13.89 10.19 44.51 4.02
2281 5380 6.589523 CCATTTGAGCGTCAATTAAAATTGGA 59.410 34.615 13.89 1.00 44.51 3.53
2282 5381 6.589523 TCCATTTGAGCGTCAATTAAAATTGG 59.410 34.615 13.89 2.46 44.51 3.16
2283 5382 7.579589 TCCATTTGAGCGTCAATTAAAATTG 57.420 32.000 8.79 8.79 45.49 2.32
2284 5383 7.818930 ACATCCATTTGAGCGTCAATTAAAATT 59.181 29.630 2.09 0.00 36.11 1.82
2285 5384 7.322664 ACATCCATTTGAGCGTCAATTAAAAT 58.677 30.769 2.09 0.00 36.11 1.82
2286 5385 6.686630 ACATCCATTTGAGCGTCAATTAAAA 58.313 32.000 2.09 0.00 36.11 1.52
2287 5386 6.266168 ACATCCATTTGAGCGTCAATTAAA 57.734 33.333 2.09 0.00 36.11 1.52
2288 5387 5.895636 ACATCCATTTGAGCGTCAATTAA 57.104 34.783 2.09 0.00 36.11 1.40
2289 5388 6.992123 AGATACATCCATTTGAGCGTCAATTA 59.008 34.615 2.09 0.00 36.11 1.40
2290 5389 5.824624 AGATACATCCATTTGAGCGTCAATT 59.175 36.000 2.09 0.00 36.11 2.32
2291 5390 5.371526 AGATACATCCATTTGAGCGTCAAT 58.628 37.500 2.09 0.00 36.11 2.57
2292 5391 4.769688 AGATACATCCATTTGAGCGTCAA 58.230 39.130 0.00 0.00 34.03 3.18
2293 5392 4.406648 AGATACATCCATTTGAGCGTCA 57.593 40.909 0.00 0.00 0.00 4.35
2294 5393 5.773575 TCTAGATACATCCATTTGAGCGTC 58.226 41.667 0.00 0.00 0.00 5.19
2295 5394 5.791336 TCTAGATACATCCATTTGAGCGT 57.209 39.130 0.00 0.00 0.00 5.07
2296 5395 5.117745 CGTTCTAGATACATCCATTTGAGCG 59.882 44.000 0.00 0.00 0.00 5.03
2297 5396 5.107298 GCGTTCTAGATACATCCATTTGAGC 60.107 44.000 0.00 0.00 0.00 4.26
2298 5397 5.117745 CGCGTTCTAGATACATCCATTTGAG 59.882 44.000 0.00 0.00 0.00 3.02
2299 5398 4.982295 CGCGTTCTAGATACATCCATTTGA 59.018 41.667 0.00 0.00 0.00 2.69
2300 5399 4.982295 TCGCGTTCTAGATACATCCATTTG 59.018 41.667 5.77 0.00 0.00 2.32
2301 5400 5.196341 TCGCGTTCTAGATACATCCATTT 57.804 39.130 5.77 0.00 0.00 2.32
2302 5401 4.321304 CCTCGCGTTCTAGATACATCCATT 60.321 45.833 5.77 0.00 0.00 3.16
2303 5402 3.191581 CCTCGCGTTCTAGATACATCCAT 59.808 47.826 5.77 0.00 0.00 3.41
2304 5403 2.552743 CCTCGCGTTCTAGATACATCCA 59.447 50.000 5.77 0.00 0.00 3.41
2305 5404 2.812591 TCCTCGCGTTCTAGATACATCC 59.187 50.000 5.77 0.00 0.00 3.51
2306 5405 4.023878 ACTTCCTCGCGTTCTAGATACATC 60.024 45.833 5.77 0.00 0.00 3.06
2307 5406 3.884091 ACTTCCTCGCGTTCTAGATACAT 59.116 43.478 5.77 0.00 0.00 2.29
2308 5407 3.276857 ACTTCCTCGCGTTCTAGATACA 58.723 45.455 5.77 0.00 0.00 2.29
2309 5408 3.967203 ACTTCCTCGCGTTCTAGATAC 57.033 47.619 5.77 0.00 0.00 2.24
2310 5409 4.701765 ACTACTTCCTCGCGTTCTAGATA 58.298 43.478 5.77 0.00 0.00 1.98
2311 5410 3.543665 ACTACTTCCTCGCGTTCTAGAT 58.456 45.455 5.77 0.00 0.00 1.98
2312 5411 2.983229 ACTACTTCCTCGCGTTCTAGA 58.017 47.619 5.77 0.00 0.00 2.43
2313 5412 5.421212 AATACTACTTCCTCGCGTTCTAG 57.579 43.478 5.77 2.68 0.00 2.43
2314 5413 5.355071 TCAAATACTACTTCCTCGCGTTCTA 59.645 40.000 5.77 0.00 0.00 2.10
2315 5414 4.157289 TCAAATACTACTTCCTCGCGTTCT 59.843 41.667 5.77 0.00 0.00 3.01
2316 5415 4.418392 TCAAATACTACTTCCTCGCGTTC 58.582 43.478 5.77 0.00 0.00 3.95
2317 5416 4.082354 ACTCAAATACTACTTCCTCGCGTT 60.082 41.667 5.77 0.00 0.00 4.84
2318 5417 3.442977 ACTCAAATACTACTTCCTCGCGT 59.557 43.478 5.77 0.00 0.00 6.01
2319 5418 4.030134 ACTCAAATACTACTTCCTCGCG 57.970 45.455 0.00 0.00 0.00 5.87
2320 5419 6.736123 TCATACTCAAATACTACTTCCTCGC 58.264 40.000 0.00 0.00 0.00 5.03
2321 5420 9.751542 ATTTCATACTCAAATACTACTTCCTCG 57.248 33.333 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.