Multiple sequence alignment - TraesCS2B01G594200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G594200 chr2B 100.000 4321 0 0 1 4321 778852310 778847990 0.000000e+00 7980.0
1 TraesCS2B01G594200 chr2A 88.762 3604 233 60 819 4320 778428214 778424681 0.000000e+00 4253.0
2 TraesCS2B01G594200 chr2A 87.458 598 68 5 1 594 778428983 778428389 0.000000e+00 682.0
3 TraesCS2B01G594200 chr2A 85.714 91 13 0 3064 3154 24313701 24313791 3.560000e-16 97.1
4 TraesCS2B01G594200 chr2D 91.923 1981 106 21 1661 3611 634874376 634876332 0.000000e+00 2723.0
5 TraesCS2B01G594200 chr2D 88.275 742 41 10 967 1686 634873651 634874368 0.000000e+00 846.0
6 TraesCS2B01G594200 chr2D 93.882 425 20 4 3736 4159 634876515 634876934 1.690000e-178 636.0
7 TraesCS2B01G594200 chr2D 79.345 702 85 40 282 941 634872530 634873213 5.130000e-119 438.0
8 TraesCS2B01G594200 chr2D 88.235 85 8 1 4215 4299 634876949 634877031 2.750000e-17 100.0
9 TraesCS2B01G594200 chr2D 81.443 97 8 9 3627 3721 634876385 634876473 2.160000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G594200 chr2B 778847990 778852310 4320 True 7980.000000 7980 100.000000 1 4321 1 chr2B.!!$R1 4320
1 TraesCS2B01G594200 chr2A 778424681 778428983 4302 True 2467.500000 4253 88.110000 1 4320 2 chr2A.!!$R1 4319
2 TraesCS2B01G594200 chr2D 634872530 634877031 4501 False 802.383333 2723 87.183833 282 4299 6 chr2D.!!$F1 4017

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
971 1018 0.039764 CCAAAAACCTCTCCCCCTCC 59.960 60.0 0.0 0.0 0.0 4.30 F
2010 2564 0.184451 GTGCCCCCATGATGATGAGT 59.816 55.0 0.0 0.0 0.0 3.41 F
2730 3307 0.103390 GGAAGGAGAAGGAGCTACGC 59.897 60.0 0.0 0.0 0.0 4.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2727 3304 0.179140 CTGCAATTATTTGGGCGCGT 60.179 50.0 8.43 0.00 33.22 6.01 R
3303 3880 0.179078 AGCTACTCTGATGCTGCTGC 60.179 55.0 8.89 8.89 35.54 5.25 R
3958 4601 0.598680 CCATCCGGATCAACGAGAGC 60.599 60.0 15.88 0.00 35.47 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 5.194473 AGGAAAGTCCTTTTATTCCCTCC 57.806 43.478 0.00 0.00 46.91 4.30
46 47 3.451540 AGTCCTTTTATTCCCTCCGTCTC 59.548 47.826 0.00 0.00 0.00 3.36
53 54 7.173390 CCTTTTATTCCCTCCGTCTCAATATTC 59.827 40.741 0.00 0.00 0.00 1.75
94 95 7.949690 AATCCTCATCAAATTTGATCACTCA 57.050 32.000 27.08 12.93 45.62 3.41
97 98 7.344134 TCCTCATCAAATTTGATCACTCAGAT 58.656 34.615 27.08 5.13 45.62 2.90
98 99 7.282450 TCCTCATCAAATTTGATCACTCAGATG 59.718 37.037 27.08 17.35 45.62 2.90
117 118 9.265901 CTCAGATGATCATTCCTAAATTTACGT 57.734 33.333 10.14 0.00 0.00 3.57
172 174 1.153005 CCTCTTCCCCTGCTGCATC 60.153 63.158 1.31 0.00 0.00 3.91
180 182 1.376424 CCTGCTGCATCCGACACTT 60.376 57.895 1.31 0.00 0.00 3.16
181 183 1.364626 CCTGCTGCATCCGACACTTC 61.365 60.000 1.31 0.00 0.00 3.01
182 184 1.690283 CTGCTGCATCCGACACTTCG 61.690 60.000 1.31 0.00 45.44 3.79
199 201 0.397675 TCGATGACCCTGGAGCTCAT 60.398 55.000 17.19 0.00 0.00 2.90
225 227 2.771943 TCTAACCTCCACCACCATCATC 59.228 50.000 0.00 0.00 0.00 2.92
229 231 0.105593 CTCCACCACCATCATCTCCG 59.894 60.000 0.00 0.00 0.00 4.63
234 236 1.909302 ACCACCATCATCTCCGTTCTT 59.091 47.619 0.00 0.00 0.00 2.52
237 239 1.212616 CCATCATCTCCGTTCTTCGC 58.787 55.000 0.00 0.00 38.35 4.70
251 253 3.071874 TCTTCGCTCAATTCCACCAAT 57.928 42.857 0.00 0.00 0.00 3.16
253 255 0.810648 TCGCTCAATTCCACCAATGC 59.189 50.000 0.00 0.00 0.00 3.56
276 278 1.098050 CAAGCAAGCATGACCTACCC 58.902 55.000 0.00 0.00 0.00 3.69
278 280 0.916358 AGCAAGCATGACCTACCCCT 60.916 55.000 0.00 0.00 0.00 4.79
279 281 0.837272 GCAAGCATGACCTACCCCTA 59.163 55.000 0.00 0.00 0.00 3.53
280 282 1.421646 GCAAGCATGACCTACCCCTAT 59.578 52.381 0.00 0.00 0.00 2.57
283 285 0.764890 GCATGACCTACCCCTATGCA 59.235 55.000 0.00 0.00 42.63 3.96
317 319 3.567478 AATCGAGCGCACACCACGA 62.567 57.895 11.47 10.95 37.39 4.35
336 338 1.454111 CGAGATCCTCCTCCACCGT 60.454 63.158 0.00 0.00 0.00 4.83
358 360 1.739466 CAACCTCATCACACAATCCCG 59.261 52.381 0.00 0.00 0.00 5.14
393 395 2.470057 ACCAACACCCCATGAAAGTT 57.530 45.000 0.00 0.00 0.00 2.66
406 408 6.351286 CCCCATGAAAGTTCCCTTAAAATGAG 60.351 42.308 0.00 0.00 0.00 2.90
411 413 4.657814 AGTTCCCTTAAAATGAGCCTCA 57.342 40.909 0.00 0.00 0.00 3.86
430 432 1.067354 CAAATGAACTGAAGGGGCAGC 60.067 52.381 0.00 0.00 39.51 5.25
454 461 0.807667 GCGATTCGTGCTCTCATGGT 60.808 55.000 8.03 0.00 0.00 3.55
492 499 3.366679 GGCAACACTTGAATCATGTGGAG 60.367 47.826 26.03 19.83 41.69 3.86
517 527 0.442699 CTACAAGGAGAAAACGCGGC 59.557 55.000 12.47 0.00 0.00 6.53
521 531 1.084289 AAGGAGAAAACGCGGCATAC 58.916 50.000 12.47 0.00 0.00 2.39
526 536 2.606440 GAAAACGCGGCATACGACGG 62.606 60.000 12.47 0.00 46.79 4.79
563 573 1.945394 CGAGAGAGGCAATGAATTGGG 59.055 52.381 5.25 0.00 38.21 4.12
569 579 0.107268 GGCAATGAATTGGGGGATGC 59.893 55.000 5.25 0.00 38.21 3.91
574 584 1.754234 GAATTGGGGGATGCAGCGT 60.754 57.895 0.00 0.00 0.00 5.07
575 585 1.728490 GAATTGGGGGATGCAGCGTC 61.728 60.000 6.00 6.00 0.00 5.19
584 594 1.536072 GGATGCAGCGTCGTCAGATAA 60.536 52.381 8.57 0.00 0.00 1.75
595 605 1.799181 CGTCAGATAACTGCCGAGGTG 60.799 57.143 0.00 0.00 46.31 4.00
624 650 2.430332 GAGACAGATGAGGAAGGGACTG 59.570 54.545 0.00 0.00 40.86 3.51
632 658 0.612453 AGGAAGGGACTGGACGTCTC 60.612 60.000 16.46 5.06 43.82 3.36
643 669 2.035961 CTGGACGTCTCCTTTTCTCACA 59.964 50.000 16.46 0.00 37.48 3.58
649 675 4.202264 ACGTCTCCTTTTCTCACACTGATT 60.202 41.667 0.00 0.00 0.00 2.57
650 676 4.752101 CGTCTCCTTTTCTCACACTGATTT 59.248 41.667 0.00 0.00 0.00 2.17
652 678 4.516698 TCTCCTTTTCTCACACTGATTTGC 59.483 41.667 0.00 0.00 0.00 3.68
661 698 4.883026 CTGATTTGCAGTGCTGGC 57.117 55.556 17.60 3.89 39.85 4.85
667 704 3.755526 TTGCAGTGCTGGCGTGAGT 62.756 57.895 17.60 0.00 0.00 3.41
680 717 1.498865 CGTGAGTGTGCCAGTGGTTC 61.499 60.000 11.74 4.93 0.00 3.62
727 764 4.973055 CCACCGGGCGAACGTTCA 62.973 66.667 26.71 0.00 0.00 3.18
730 767 3.110178 CCGGGCGAACGTTCACTC 61.110 66.667 26.71 17.14 0.00 3.51
732 769 2.372690 CGGGCGAACGTTCACTCTG 61.373 63.158 26.71 15.83 0.00 3.35
736 773 1.337821 GCGAACGTTCACTCTGTAGG 58.662 55.000 26.71 9.10 0.00 3.18
738 775 2.095567 GCGAACGTTCACTCTGTAGGTA 60.096 50.000 26.71 0.00 0.00 3.08
739 776 3.744987 CGAACGTTCACTCTGTAGGTAG 58.255 50.000 26.71 3.07 0.00 3.18
740 777 3.434641 CGAACGTTCACTCTGTAGGTAGA 59.565 47.826 26.71 0.00 0.00 2.59
742 779 5.391736 CGAACGTTCACTCTGTAGGTAGATT 60.392 44.000 26.71 0.00 0.00 2.40
744 781 6.342338 ACGTTCACTCTGTAGGTAGATTTT 57.658 37.500 0.00 0.00 0.00 1.82
745 782 6.756221 ACGTTCACTCTGTAGGTAGATTTTT 58.244 36.000 0.00 0.00 0.00 1.94
746 783 6.867293 ACGTTCACTCTGTAGGTAGATTTTTC 59.133 38.462 0.00 0.00 0.00 2.29
748 785 7.062371 CGTTCACTCTGTAGGTAGATTTTTCAG 59.938 40.741 0.00 0.00 0.00 3.02
749 786 6.936279 TCACTCTGTAGGTAGATTTTTCAGG 58.064 40.000 0.00 0.00 0.00 3.86
750 787 6.070767 TCACTCTGTAGGTAGATTTTTCAGGG 60.071 42.308 0.00 0.00 0.00 4.45
751 788 5.785940 ACTCTGTAGGTAGATTTTTCAGGGT 59.214 40.000 0.00 0.00 31.52 4.34
752 789 6.272558 ACTCTGTAGGTAGATTTTTCAGGGTT 59.727 38.462 0.00 0.00 32.28 4.11
753 790 7.086685 TCTGTAGGTAGATTTTTCAGGGTTT 57.913 36.000 0.00 0.00 0.00 3.27
886 926 1.062121 TCCAAATCCAAAACCACCCCA 60.062 47.619 0.00 0.00 0.00 4.96
918 965 2.356313 ACGCGAAGTCCACAGCAG 60.356 61.111 15.93 0.00 0.00 4.24
933 980 3.357079 CAGCAGTCCAACCGCACC 61.357 66.667 0.00 0.00 0.00 5.01
934 981 4.643387 AGCAGTCCAACCGCACCC 62.643 66.667 0.00 0.00 0.00 4.61
963 1010 2.258726 GCGCCGACCAAAAACCTCT 61.259 57.895 0.00 0.00 0.00 3.69
968 1015 0.608308 CGACCAAAAACCTCTCCCCC 60.608 60.000 0.00 0.00 0.00 5.40
969 1016 0.778083 GACCAAAAACCTCTCCCCCT 59.222 55.000 0.00 0.00 0.00 4.79
971 1018 0.039764 CCAAAAACCTCTCCCCCTCC 59.960 60.000 0.00 0.00 0.00 4.30
979 1438 4.825679 CTCCCCCTCCCTCCCCAC 62.826 77.778 0.00 0.00 0.00 4.61
1172 1666 3.430497 CCCCGAGGAGGAGGAGGA 61.430 72.222 0.00 0.00 45.00 3.71
1173 1667 2.197324 CCCGAGGAGGAGGAGGAG 59.803 72.222 0.00 0.00 45.00 3.69
1174 1668 2.197324 CCGAGGAGGAGGAGGAGG 59.803 72.222 0.00 0.00 45.00 4.30
1175 1669 2.387772 CCGAGGAGGAGGAGGAGGA 61.388 68.421 0.00 0.00 45.00 3.71
1176 1670 1.150536 CGAGGAGGAGGAGGAGGAG 59.849 68.421 0.00 0.00 0.00 3.69
1177 1671 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
1178 1672 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
1179 1673 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
1180 1674 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
1181 1675 2.123033 GGAGGAGGAGGAGGAGGC 60.123 72.222 0.00 0.00 0.00 4.70
1390 1884 4.717313 GGTGAGAACCGCCCCCAC 62.717 72.222 0.00 0.00 39.55 4.61
1410 1904 1.090052 CCGATCCCTTTTCGCCTGTC 61.090 60.000 0.00 0.00 35.31 3.51
1454 1948 4.893601 GCTAGGGTTCCGGCGCTC 62.894 72.222 7.64 0.00 33.59 5.03
1455 1949 3.458163 CTAGGGTTCCGGCGCTCA 61.458 66.667 7.64 0.00 33.59 4.26
1458 1952 4.821589 GGGTTCCGGCGCTCAGAG 62.822 72.222 7.64 0.00 0.00 3.35
1460 1954 2.507324 GTTCCGGCGCTCAGAGTC 60.507 66.667 7.64 0.00 0.00 3.36
1481 1975 5.825679 AGTCAGATCTAATCTAACGCTCTGT 59.174 40.000 0.00 0.00 37.58 3.41
1539 2033 1.039785 CCTGGAGGTGCTGATCTCGA 61.040 60.000 0.00 0.00 28.76 4.04
1542 2036 2.625314 CTGGAGGTGCTGATCTCGATTA 59.375 50.000 0.00 0.00 28.76 1.75
1548 2042 5.053145 AGGTGCTGATCTCGATTACAATTC 58.947 41.667 0.00 0.00 0.00 2.17
1560 2054 5.803461 TCGATTACAATTCTGTGTACGGAAG 59.197 40.000 11.49 2.71 43.69 3.46
1562 2056 2.423577 ACAATTCTGTGTACGGAAGCC 58.576 47.619 11.49 0.00 43.69 4.35
1563 2057 2.038557 ACAATTCTGTGTACGGAAGCCT 59.961 45.455 11.49 0.00 43.69 4.58
1576 2070 5.813080 ACGGAAGCCTGTATTTTTATGTC 57.187 39.130 0.00 0.00 0.00 3.06
1613 2107 4.338879 AGGATGGAACTGGAAATTGAGTG 58.661 43.478 0.00 0.00 0.00 3.51
1651 2148 3.253188 CACCAAGTTTCATCGTGTGGATT 59.747 43.478 0.00 0.00 31.28 3.01
1669 2180 6.988580 TGTGGATTTATGACTGAATCTGCTAG 59.011 38.462 0.00 0.00 33.75 3.42
1678 2189 5.105716 TGACTGAATCTGCTAGTTACAGTCC 60.106 44.000 17.50 5.09 46.50 3.85
1686 2197 5.357314 TCTGCTAGTTACAGTCCATCTACAC 59.643 44.000 0.00 0.00 36.50 2.90
1688 2199 5.125578 TGCTAGTTACAGTCCATCTACACTG 59.874 44.000 0.00 0.00 44.83 3.66
1696 2240 3.138304 GTCCATCTACACTGTTGCAACA 58.862 45.455 29.36 29.36 37.37 3.33
1715 2267 3.594134 ACACTGCATCTAGTTCAAGCTC 58.406 45.455 0.00 0.00 0.00 4.09
1719 2271 3.854666 TGCATCTAGTTCAAGCTCTGAC 58.145 45.455 0.00 0.00 32.21 3.51
1743 2297 9.821662 GACATTTACATGGTTAAGTTAACAGTC 57.178 33.333 23.64 9.99 40.39 3.51
1745 2299 9.825972 CATTTACATGGTTAAGTTAACAGTCTG 57.174 33.333 23.64 16.72 40.39 3.51
1754 2308 8.947115 GGTTAAGTTAACAGTCTGCTGATTATT 58.053 33.333 23.64 0.00 45.28 1.40
1765 2319 9.539825 CAGTCTGCTGATTATTACTGAACTTAT 57.460 33.333 0.00 0.00 45.28 1.73
1800 2354 4.826733 ACATGGTTGTCATAGAAAAGTGCA 59.173 37.500 0.00 0.00 34.12 4.57
1803 2357 3.821033 GGTTGTCATAGAAAAGTGCAGGT 59.179 43.478 0.00 0.00 0.00 4.00
1807 2361 5.616270 TGTCATAGAAAAGTGCAGGTTGTA 58.384 37.500 0.00 0.00 0.00 2.41
1808 2362 6.237901 TGTCATAGAAAAGTGCAGGTTGTAT 58.762 36.000 0.00 0.00 0.00 2.29
1845 2399 2.879026 GGGTCACTTGTTCAGTTCCTTC 59.121 50.000 0.00 0.00 30.92 3.46
1867 2421 5.199424 CGAGTAAATCGTGGTTTAACCTG 57.801 43.478 15.68 8.03 46.62 4.00
1932 2486 5.640732 CATAAATGTGGTAGGCTTGTGAAC 58.359 41.667 0.00 0.00 0.00 3.18
1955 2509 5.839063 ACCTATCTAAGCTACCTTGTATGCA 59.161 40.000 0.00 0.00 32.47 3.96
2010 2564 0.184451 GTGCCCCCATGATGATGAGT 59.816 55.000 0.00 0.00 0.00 3.41
2032 2586 7.094334 TGAGTTGTACATATCGTCTCTTTCAGT 60.094 37.037 0.00 0.00 0.00 3.41
2036 2590 3.859961 ACATATCGTCTCTTTCAGTTGCG 59.140 43.478 0.00 0.00 0.00 4.85
2073 2627 8.656849 AGCGTAACTGATACTTTACTTTCATTG 58.343 33.333 0.00 0.00 31.96 2.82
2207 2763 0.953727 TGGCCGAGCATGCATTATTC 59.046 50.000 21.98 7.16 0.00 1.75
2265 2834 5.450592 TGCATTGCTTTTCTGAACATGTA 57.549 34.783 10.49 0.00 0.00 2.29
2293 2868 5.961396 TTTTTAAAATTGCTGCATGCCAT 57.039 30.435 16.68 0.00 42.00 4.40
2295 2870 7.444629 TTTTTAAAATTGCTGCATGCCATAA 57.555 28.000 16.68 7.64 42.00 1.90
2296 2871 7.444629 TTTTAAAATTGCTGCATGCCATAAA 57.555 28.000 16.68 4.94 42.00 1.40
2316 2891 8.567948 CCATAAATATCGGCAACTGTAATTCTT 58.432 33.333 0.00 0.00 0.00 2.52
2544 3119 1.281867 TGAACCCTGATAACTGGCCTG 59.718 52.381 8.29 8.29 34.43 4.85
2621 3196 4.283212 CCTTTTTCTGGTTTCCCTTGCATA 59.717 41.667 0.00 0.00 0.00 3.14
2631 3206 6.268847 TGGTTTCCCTTGCATAGTGTAAATTT 59.731 34.615 0.00 0.00 0.00 1.82
2727 3304 2.100989 GAACGGAAGGAGAAGGAGCTA 58.899 52.381 0.00 0.00 0.00 3.32
2730 3307 0.103390 GGAAGGAGAAGGAGCTACGC 59.897 60.000 0.00 0.00 0.00 4.42
2857 3434 2.358898 CGTGAGGGGGCATTTCTTAATG 59.641 50.000 0.00 0.00 43.28 1.90
3170 3747 3.579302 CAACCTCCACCAGCCCCA 61.579 66.667 0.00 0.00 0.00 4.96
3302 3879 3.378399 GACGGAGAAGGAGCAGCCC 62.378 68.421 0.00 0.00 37.37 5.19
3303 3880 4.521062 CGGAGAAGGAGCAGCCCG 62.521 72.222 0.00 0.00 37.37 6.13
3304 3881 4.847444 GGAGAAGGAGCAGCCCGC 62.847 72.222 0.00 0.00 42.91 6.13
3305 3882 4.087892 GAGAAGGAGCAGCCCGCA 62.088 66.667 0.00 0.00 46.13 5.69
3382 3959 7.316640 TGACTATGCTTAGACTGAAACTTCTC 58.683 38.462 13.22 0.00 0.00 2.87
3409 3986 1.985662 AATACCCGGAGTGTCGCCA 60.986 57.895 0.73 0.00 0.00 5.69
3445 4023 0.989164 TTTTGTAGAGATGCGCGTCG 59.011 50.000 23.15 0.00 0.00 5.12
3513 4091 2.754552 AGCAAACAACTGCACTCTTCAA 59.245 40.909 0.00 0.00 45.18 2.69
3535 4113 2.507886 TGTTTTCTCCTGGTTCCAGACA 59.492 45.455 19.12 11.48 36.24 3.41
3555 4133 5.418840 AGACATTTTGGATGGGTGAATACAC 59.581 40.000 0.00 0.00 45.27 2.90
3602 4180 7.386025 TGAGAAGTTAACTGAATGTGATGACAG 59.614 37.037 9.34 0.00 34.87 3.51
3605 4183 2.865119 ACTGAATGTGATGACAGGCA 57.135 45.000 0.00 0.00 34.87 4.75
3616 4194 3.455543 TGATGACAGGCATGATTCTACCA 59.544 43.478 4.84 0.00 37.34 3.25
3622 4200 6.013119 TGACAGGCATGATTCTACCATCATAT 60.013 38.462 4.84 0.00 41.20 1.78
3665 4280 5.243981 CCCTGGCATGAATCACTAATCTAG 58.756 45.833 0.00 0.00 0.00 2.43
3666 4281 5.221803 CCCTGGCATGAATCACTAATCTAGT 60.222 44.000 0.00 0.00 40.28 2.57
3667 4282 6.014242 CCCTGGCATGAATCACTAATCTAGTA 60.014 42.308 0.00 0.00 37.23 1.82
3668 4283 7.310921 CCCTGGCATGAATCACTAATCTAGTAT 60.311 40.741 0.00 0.00 37.23 2.12
3669 4284 8.753133 CCTGGCATGAATCACTAATCTAGTATA 58.247 37.037 0.00 0.00 37.23 1.47
3698 4314 8.911918 TTTACAATTTCTAACTTGCCTCACTA 57.088 30.769 0.00 0.00 0.00 2.74
3700 4316 7.440523 ACAATTTCTAACTTGCCTCACTAAG 57.559 36.000 0.00 0.00 0.00 2.18
3748 4391 1.838077 GTGCCCTCTGTAACCCTACAT 59.162 52.381 0.00 0.00 37.41 2.29
3749 4392 3.036091 GTGCCCTCTGTAACCCTACATA 58.964 50.000 0.00 0.00 37.41 2.29
3750 4393 3.646637 GTGCCCTCTGTAACCCTACATAT 59.353 47.826 0.00 0.00 37.41 1.78
3758 4401 8.314751 CCTCTGTAACCCTACATATAATGGAAG 58.685 40.741 0.00 0.00 37.41 3.46
3776 4419 6.377327 TGGAAGTAAAGAAACAAAGCAGAG 57.623 37.500 0.00 0.00 0.00 3.35
3785 4428 1.377994 CAAAGCAGAGCACCCTCCT 59.622 57.895 0.00 0.00 38.96 3.69
3859 4502 1.061131 GTGCTGAACATGTCGGAATCG 59.939 52.381 0.00 0.00 34.07 3.34
3949 4592 4.910585 CTGATGTACCCCGGCGCC 62.911 72.222 19.07 19.07 0.00 6.53
3976 4619 0.936764 CGCTCTCGTTGATCCGGATG 60.937 60.000 24.82 7.51 0.00 3.51
4012 4655 1.450848 CACCACCTGCAGCATCGAT 60.451 57.895 8.66 0.00 0.00 3.59
4015 4658 2.515523 ACCTGCAGCATCGATGGC 60.516 61.111 26.00 21.03 0.00 4.40
4090 4733 2.334023 GCCTCCTCATCAGGGTAATCT 58.666 52.381 0.00 0.00 40.80 2.40
4121 4764 2.087646 GATCAACCAGTTCCTTGAGGC 58.912 52.381 0.00 0.00 34.44 4.70
4144 4787 1.474677 CCTGCTTCATACAGCTCCCAG 60.475 57.143 0.00 0.00 40.79 4.45
4159 4802 2.038952 CTCCCAGGTCTGTTGTCAATGA 59.961 50.000 0.00 0.00 0.00 2.57
4160 4803 2.441375 TCCCAGGTCTGTTGTCAATGAA 59.559 45.455 0.00 0.00 0.00 2.57
4161 4804 3.074390 TCCCAGGTCTGTTGTCAATGAAT 59.926 43.478 0.00 0.00 0.00 2.57
4162 4805 3.192001 CCCAGGTCTGTTGTCAATGAATG 59.808 47.826 0.00 0.00 0.00 2.67
4168 4811 5.239306 GGTCTGTTGTCAATGAATGTTCAGA 59.761 40.000 1.65 0.00 41.08 3.27
4176 4819 6.650807 TGTCAATGAATGTTCAGAGTTAGACC 59.349 38.462 1.65 0.00 41.08 3.85
4177 4820 6.650807 GTCAATGAATGTTCAGAGTTAGACCA 59.349 38.462 1.65 0.00 41.08 4.02
4178 4821 6.875726 TCAATGAATGTTCAGAGTTAGACCAG 59.124 38.462 1.65 0.00 41.08 4.00
4179 4822 5.152623 TGAATGTTCAGAGTTAGACCAGG 57.847 43.478 0.00 0.00 32.50 4.45
4181 4824 4.810191 ATGTTCAGAGTTAGACCAGGAC 57.190 45.455 0.00 0.00 0.00 3.85
4182 4825 2.897969 TGTTCAGAGTTAGACCAGGACC 59.102 50.000 0.00 0.00 0.00 4.46
4183 4826 2.897969 GTTCAGAGTTAGACCAGGACCA 59.102 50.000 0.00 0.00 0.00 4.02
4204 4848 6.323203 CCAGAGGCTGGTATAAATCATTTG 57.677 41.667 5.31 0.00 45.82 2.32
4212 4856 6.145048 GCTGGTATAAATCATTTGATGCTTGC 59.855 38.462 0.00 0.00 34.49 4.01
4247 4893 2.225467 GCATAAAGTCAGGGAGATGCC 58.775 52.381 0.00 0.00 34.88 4.40
4252 4898 1.377202 GTCAGGGAGATGCCGCAAA 60.377 57.895 0.00 0.00 37.63 3.68
4257 4903 1.004277 AGGGAGATGCCGCAAACTAAA 59.996 47.619 0.00 0.00 37.63 1.85
4262 4908 4.096732 AGATGCCGCAAACTAAATTCAC 57.903 40.909 0.00 0.00 0.00 3.18
4263 4909 2.715737 TGCCGCAAACTAAATTCACC 57.284 45.000 0.00 0.00 0.00 4.02
4278 4924 3.343941 TTCACCCCACATAACTGTAGC 57.656 47.619 0.00 0.00 33.14 3.58
4280 4926 2.236146 TCACCCCACATAACTGTAGCAG 59.764 50.000 0.00 0.00 37.52 4.24
4320 4966 6.275335 ACAATGTTGTTGTTCTGATTTCTGG 58.725 36.000 0.00 0.00 38.47 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 6.524586 GGCTTTTGAGTTTGAATATTGAGACG 59.475 38.462 0.00 0.00 0.00 4.18
46 47 8.592105 TTTCAGGCTTTTGAGTTTGAATATTG 57.408 30.769 0.00 0.00 0.00 1.90
53 54 5.205759 AGGATTTCAGGCTTTTGAGTTTG 57.794 39.130 0.00 0.00 0.00 2.93
132 133 5.782845 AGGCTGTAACATCCCCAAATTTTAA 59.217 36.000 0.00 0.00 0.00 1.52
133 134 5.337788 AGGCTGTAACATCCCCAAATTTTA 58.662 37.500 0.00 0.00 0.00 1.52
139 140 1.668826 AGAGGCTGTAACATCCCCAA 58.331 50.000 0.00 0.00 0.00 4.12
180 182 1.000359 TGAGCTCCAGGGTCATCGA 60.000 57.895 12.15 0.00 45.96 3.59
181 183 3.621225 TGAGCTCCAGGGTCATCG 58.379 61.111 12.15 0.00 45.96 3.84
199 201 2.116238 GGTGGTGGAGGTTAGATAGCA 58.884 52.381 0.00 0.00 0.00 3.49
202 204 4.002256 TGATGGTGGTGGAGGTTAGATA 57.998 45.455 0.00 0.00 0.00 1.98
225 227 1.661112 GGAATTGAGCGAAGAACGGAG 59.339 52.381 0.00 0.00 42.83 4.63
229 231 2.151202 TGGTGGAATTGAGCGAAGAAC 58.849 47.619 0.00 0.00 0.00 3.01
234 236 0.810648 GCATTGGTGGAATTGAGCGA 59.189 50.000 0.00 0.00 0.00 4.93
251 253 1.600356 TCATGCTTGCTTGACCGCA 60.600 52.632 7.03 0.00 38.31 5.69
261 263 2.811873 GCATAGGGGTAGGTCATGCTTG 60.812 54.545 0.00 0.00 39.09 4.01
272 274 2.054799 GGAAGTGGATGCATAGGGGTA 58.945 52.381 0.00 0.00 0.00 3.69
276 278 2.288702 CGAGAGGAAGTGGATGCATAGG 60.289 54.545 0.00 0.00 0.00 2.57
278 280 2.666317 TCGAGAGGAAGTGGATGCATA 58.334 47.619 0.00 0.00 0.00 3.14
279 281 1.489481 TCGAGAGGAAGTGGATGCAT 58.511 50.000 0.00 0.00 0.00 3.96
280 282 1.266178 TTCGAGAGGAAGTGGATGCA 58.734 50.000 0.00 0.00 0.00 3.96
283 285 3.024547 TCGATTTCGAGAGGAAGTGGAT 58.975 45.455 0.00 0.00 44.22 3.41
317 319 1.454111 CGGTGGAGGAGGATCTCGT 60.454 63.158 0.00 0.00 34.74 4.18
336 338 2.161855 GGATTGTGTGATGAGGTTGCA 58.838 47.619 0.00 0.00 0.00 4.08
358 360 0.912487 TGGTAGGGGTGGGACATGAC 60.912 60.000 0.00 0.00 44.52 3.06
393 395 5.579047 TCATTTGAGGCTCATTTTAAGGGA 58.421 37.500 19.50 8.56 0.00 4.20
406 408 1.821136 CCCCTTCAGTTCATTTGAGGC 59.179 52.381 0.00 0.00 0.00 4.70
411 413 1.260544 GCTGCCCCTTCAGTTCATTT 58.739 50.000 0.00 0.00 36.49 2.32
430 432 3.607987 GAGCACGAATCGCGACCG 61.608 66.667 24.89 24.89 44.57 4.79
454 461 2.491693 GTTGCCCAGTAGCATGCTTTTA 59.508 45.455 28.02 4.72 43.64 1.52
492 499 2.985139 CGTTTTCTCCTTGTAGTCGTCC 59.015 50.000 0.00 0.00 0.00 4.79
517 527 1.821241 CGCATTGCCTCCGTCGTATG 61.821 60.000 2.41 0.00 0.00 2.39
521 531 2.202690 TACGCATTGCCTCCGTCG 60.203 61.111 2.41 0.00 36.51 5.12
536 546 5.440234 TTCATTGCCTCTCTCGTATCTAC 57.560 43.478 0.00 0.00 0.00 2.59
537 547 6.450545 CAATTCATTGCCTCTCTCGTATCTA 58.549 40.000 0.00 0.00 0.00 1.98
538 548 5.295950 CAATTCATTGCCTCTCTCGTATCT 58.704 41.667 0.00 0.00 0.00 1.98
539 549 4.450419 CCAATTCATTGCCTCTCTCGTATC 59.550 45.833 0.00 0.00 36.48 2.24
555 565 1.753848 CGCTGCATCCCCCAATTCA 60.754 57.895 0.00 0.00 0.00 2.57
563 573 2.635229 ATCTGACGACGCTGCATCCC 62.635 60.000 0.00 0.00 0.00 3.85
569 579 0.917259 GCAGTTATCTGACGACGCTG 59.083 55.000 4.94 0.00 43.76 5.18
595 605 1.403679 CCTCATCTGTCTCCACGAGTC 59.596 57.143 0.00 0.00 0.00 3.36
600 610 1.484240 CCCTTCCTCATCTGTCTCCAC 59.516 57.143 0.00 0.00 0.00 4.02
624 650 2.036089 AGTGTGAGAAAAGGAGACGTCC 59.964 50.000 13.01 3.55 44.33 4.79
632 658 4.543692 CTGCAAATCAGTGTGAGAAAAGG 58.456 43.478 0.00 0.00 38.02 3.11
649 675 2.974148 CTCACGCCAGCACTGCAA 60.974 61.111 3.30 0.00 0.00 4.08
650 676 4.240103 ACTCACGCCAGCACTGCA 62.240 61.111 3.30 0.00 0.00 4.41
652 678 2.280389 ACACTCACGCCAGCACTG 60.280 61.111 0.00 0.00 0.00 3.66
661 698 1.498865 GAACCACTGGCACACTCACG 61.499 60.000 0.00 0.00 0.00 4.35
667 704 1.152984 CCACTGAACCACTGGCACA 60.153 57.895 0.00 0.00 0.00 4.57
675 712 0.813610 CGTTCACTGCCACTGAACCA 60.814 55.000 10.40 0.00 43.10 3.67
680 717 2.943345 GACGCGTTCACTGCCACTG 61.943 63.158 15.53 0.00 0.00 3.66
716 753 1.337821 CTACAGAGTGAACGTTCGCC 58.662 55.000 32.22 24.16 38.43 5.54
727 764 5.785940 ACCCTGAAAAATCTACCTACAGAGT 59.214 40.000 0.00 0.00 0.00 3.24
730 767 7.761038 AAAACCCTGAAAAATCTACCTACAG 57.239 36.000 0.00 0.00 0.00 2.74
816 854 1.504359 CCACGCGTTCCTTTACTCAA 58.496 50.000 10.22 0.00 0.00 3.02
1170 1664 4.779733 TCCACCGCCTCCTCCTCC 62.780 72.222 0.00 0.00 0.00 4.30
1171 1665 3.462678 GTCCACCGCCTCCTCCTC 61.463 72.222 0.00 0.00 0.00 3.71
1174 1668 3.827898 CTCGTCCACCGCCTCCTC 61.828 72.222 0.00 0.00 36.19 3.71
1177 1671 3.827898 CTCCTCGTCCACCGCCTC 61.828 72.222 0.00 0.00 36.19 4.70
1178 1672 3.663815 ATCTCCTCGTCCACCGCCT 62.664 63.158 0.00 0.00 36.19 5.52
1179 1673 3.140225 GATCTCCTCGTCCACCGCC 62.140 68.421 0.00 0.00 36.19 6.13
1180 1674 2.413765 GATCTCCTCGTCCACCGC 59.586 66.667 0.00 0.00 36.19 5.68
1181 1675 2.716244 CGATCTCCTCGTCCACCG 59.284 66.667 0.00 0.00 42.56 4.94
1390 1884 1.819632 CAGGCGAAAAGGGATCGGG 60.820 63.158 0.00 0.00 40.54 5.14
1410 1904 2.280186 GCCAGGAACCGGATAGCG 60.280 66.667 9.46 0.00 0.00 4.26
1454 1948 6.204688 AGAGCGTTAGATTAGATCTGACTCTG 59.795 42.308 5.18 0.00 39.90 3.35
1455 1949 6.296026 AGAGCGTTAGATTAGATCTGACTCT 58.704 40.000 5.18 7.08 41.69 3.24
1481 1975 3.388024 ACATTAGGCGAGAATAGCAGGAA 59.612 43.478 0.00 0.00 39.04 3.36
1534 2028 5.124297 TCCGTACACAGAATTGTAATCGAGA 59.876 40.000 0.00 0.00 35.25 4.04
1539 2033 4.634443 GGCTTCCGTACACAGAATTGTAAT 59.366 41.667 0.00 0.00 35.25 1.89
1542 2036 2.038557 AGGCTTCCGTACACAGAATTGT 59.961 45.455 0.00 0.00 38.31 2.71
1548 2042 2.961526 ATACAGGCTTCCGTACACAG 57.038 50.000 0.00 0.00 0.00 3.66
1560 2054 4.570772 TCGAGCAGACATAAAAATACAGGC 59.429 41.667 0.00 0.00 0.00 4.85
1562 2056 7.043391 TCGAATCGAGCAGACATAAAAATACAG 60.043 37.037 0.00 0.00 0.00 2.74
1563 2057 6.754675 TCGAATCGAGCAGACATAAAAATACA 59.245 34.615 0.00 0.00 0.00 2.29
1576 2070 3.057245 TCCATCCTAATCGAATCGAGCAG 60.057 47.826 12.00 10.07 39.91 4.24
1629 2123 2.217750 TCCACACGATGAAACTTGGTG 58.782 47.619 0.00 0.00 34.87 4.17
1651 2148 8.067751 ACTGTAACTAGCAGATTCAGTCATAA 57.932 34.615 3.21 0.00 37.40 1.90
1696 2240 3.513119 TCAGAGCTTGAACTAGATGCAGT 59.487 43.478 0.00 0.00 31.34 4.40
1702 2254 6.993079 TGTAAATGTCAGAGCTTGAACTAGA 58.007 36.000 0.00 0.00 37.61 2.43
1703 2255 7.201591 CCATGTAAATGTCAGAGCTTGAACTAG 60.202 40.741 0.00 0.00 37.61 2.57
1715 2267 9.825972 CTGTTAACTTAACCATGTAAATGTCAG 57.174 33.333 7.22 0.00 37.88 3.51
1719 2271 9.825972 CAGACTGTTAACTTAACCATGTAAATG 57.174 33.333 7.22 0.00 37.88 2.32
1754 2308 7.898918 TGTAAGCACCTACAATAAGTTCAGTA 58.101 34.615 0.00 0.00 0.00 2.74
1765 2319 4.069304 GACAACCATGTAAGCACCTACAA 58.931 43.478 0.00 0.00 40.74 2.41
1766 2320 3.071747 TGACAACCATGTAAGCACCTACA 59.928 43.478 0.00 0.00 40.74 2.74
1845 2399 4.687483 ACAGGTTAAACCACGATTTACTCG 59.313 41.667 0.00 0.00 44.12 4.18
1932 2486 6.346477 TGCATACAAGGTAGCTTAGATAGG 57.654 41.667 6.90 3.85 0.00 2.57
1955 2509 6.005198 TCACCAAAATACCAAACTATCGGTT 58.995 36.000 0.00 0.00 40.28 4.44
1993 2547 1.325355 CAACTCATCATCATGGGGGC 58.675 55.000 0.00 0.00 34.30 5.80
1998 2552 7.811713 AGACGATATGTACAACTCATCATCATG 59.188 37.037 0.00 0.00 0.00 3.07
2010 2564 6.310467 GCAACTGAAAGAGACGATATGTACAA 59.690 38.462 0.00 0.00 37.43 2.41
2032 2586 0.528924 ACGCTACAGGACATACGCAA 59.471 50.000 0.00 0.00 0.00 4.85
2036 2590 4.627611 TCAGTTACGCTACAGGACATAC 57.372 45.455 0.00 0.00 0.00 2.39
2112 2666 5.741011 ACTGATCGGTTTTAATGGAGCTTA 58.259 37.500 0.00 0.00 0.00 3.09
2207 2763 2.930040 AGACACACACTTCAGAAACACG 59.070 45.455 0.00 0.00 0.00 4.49
2352 2927 8.778358 GGGCAAAAATATACAACACAAATTCAA 58.222 29.630 0.00 0.00 0.00 2.69
2392 2967 1.283347 ATGCCCAGATCACACAGAGT 58.717 50.000 0.00 0.00 0.00 3.24
2621 3196 6.656693 AGCTCATAGACAGCAAAATTTACACT 59.343 34.615 0.00 0.00 39.56 3.55
2631 3206 8.860088 TCAAACTATATAGCTCATAGACAGCAA 58.140 33.333 17.81 1.48 39.56 3.91
2727 3304 0.179140 CTGCAATTATTTGGGCGCGT 60.179 50.000 8.43 0.00 33.22 6.01
2730 3307 2.159198 AGCTTCTGCAATTATTTGGGCG 60.159 45.455 0.00 0.00 42.74 6.13
2857 3434 9.226345 GCATGTTTGCTTACAGAATATTACTTC 57.774 33.333 0.00 0.00 45.77 3.01
2879 3456 3.014623 AGTCCACAGTGATCAATGCATG 58.985 45.455 22.33 13.91 0.00 4.06
3212 3789 4.347453 CCGTTTGCTGGTGCTGGC 62.347 66.667 0.00 0.00 40.48 4.85
3302 3879 1.489070 GCTACTCTGATGCTGCTGCG 61.489 60.000 11.21 0.00 43.34 5.18
3303 3880 0.179078 AGCTACTCTGATGCTGCTGC 60.179 55.000 8.89 8.89 35.54 5.25
3304 3881 2.159071 AGAAGCTACTCTGATGCTGCTG 60.159 50.000 0.00 0.00 40.86 4.41
3305 3882 2.109774 AGAAGCTACTCTGATGCTGCT 58.890 47.619 0.00 3.15 37.84 4.24
3342 3919 4.142600 GCATAGTCATGGTTCTGGTGTTTC 60.143 45.833 0.00 0.00 32.36 2.78
3343 3920 3.758554 GCATAGTCATGGTTCTGGTGTTT 59.241 43.478 0.00 0.00 32.36 2.83
3344 3921 3.009473 AGCATAGTCATGGTTCTGGTGTT 59.991 43.478 0.00 0.00 39.90 3.32
3345 3922 2.573462 AGCATAGTCATGGTTCTGGTGT 59.427 45.455 0.00 0.00 39.90 4.16
3382 3959 3.756434 ACACTCCGGGTATTGAAAACATG 59.244 43.478 0.00 0.00 0.00 3.21
3442 4019 1.202486 TCGATACAAAGCCATCCCGAC 60.202 52.381 0.00 0.00 0.00 4.79
3445 4023 3.070018 CTGATCGATACAAAGCCATCCC 58.930 50.000 0.00 0.00 0.00 3.85
3454 4032 4.718940 TGTTCAGAGCTGATCGATACAA 57.281 40.909 0.00 0.00 39.64 2.41
3513 4091 3.138283 TGTCTGGAACCAGGAGAAAACAT 59.862 43.478 18.99 0.00 43.75 2.71
3535 4113 6.550854 CCATAGTGTATTCACCCATCCAAAAT 59.449 38.462 0.00 0.00 44.83 1.82
3602 4180 6.660521 TGGAAATATGATGGTAGAATCATGCC 59.339 38.462 9.40 6.59 44.96 4.40
3605 4183 7.464273 TGCTGGAAATATGATGGTAGAATCAT 58.536 34.615 5.14 5.14 46.55 2.45
3669 4284 9.023962 TGAGGCAAGTTAGAAATTGTAAATGAT 57.976 29.630 4.57 0.00 36.45 2.45
3680 4295 6.929606 GTCTTCTTAGTGAGGCAAGTTAGAAA 59.070 38.462 0.00 0.00 0.00 2.52
3685 4300 4.689612 TGTCTTCTTAGTGAGGCAAGTT 57.310 40.909 0.00 0.00 0.00 2.66
3698 4314 5.238214 GTCTGCTCATGAGTTTTGTCTTCTT 59.762 40.000 23.38 0.00 0.00 2.52
3700 4316 4.512944 TGTCTGCTCATGAGTTTTGTCTTC 59.487 41.667 23.38 4.56 0.00 2.87
3749 4392 9.077885 TCTGCTTTGTTTCTTTACTTCCATTAT 57.922 29.630 0.00 0.00 0.00 1.28
3750 4393 8.458573 TCTGCTTTGTTTCTTTACTTCCATTA 57.541 30.769 0.00 0.00 0.00 1.90
3758 4401 4.290969 GGTGCTCTGCTTTGTTTCTTTAC 58.709 43.478 0.00 0.00 0.00 2.01
3764 4407 1.322442 GAGGGTGCTCTGCTTTGTTT 58.678 50.000 0.00 0.00 0.00 2.83
3838 4481 1.061131 GATTCCGACATGTTCAGCACG 59.939 52.381 0.00 0.00 0.00 5.34
3859 4502 4.353437 AACTCGACCACGGCGGAC 62.353 66.667 13.24 0.00 40.21 4.79
3949 4592 2.148982 CAACGAGAGCGAGCTGACG 61.149 63.158 0.84 10.28 41.64 4.35
3958 4601 0.598680 CCATCCGGATCAACGAGAGC 60.599 60.000 15.88 0.00 35.47 4.09
4121 4764 1.202627 GGAGCTGTATGAAGCAGGGAG 60.203 57.143 0.00 0.00 46.08 4.30
4144 4787 5.239306 TCTGAACATTCATTGACAACAGACC 59.761 40.000 0.00 0.00 36.46 3.85
4159 4802 4.020128 GGTCCTGGTCTAACTCTGAACATT 60.020 45.833 0.00 0.00 30.13 2.71
4160 4803 3.515901 GGTCCTGGTCTAACTCTGAACAT 59.484 47.826 0.00 0.00 30.13 2.71
4161 4804 2.897969 GGTCCTGGTCTAACTCTGAACA 59.102 50.000 0.00 0.00 0.00 3.18
4162 4805 2.897969 TGGTCCTGGTCTAACTCTGAAC 59.102 50.000 0.00 0.00 0.00 3.18
4168 4811 1.897647 GCCTCTGGTCCTGGTCTAACT 60.898 57.143 0.00 0.00 0.00 2.24
4181 4824 7.309012 CATCAAATGATTTATACCAGCCTCTGG 60.309 40.741 11.07 11.07 44.09 3.86
4182 4825 7.591165 CATCAAATGATTTATACCAGCCTCTG 58.409 38.462 0.00 0.00 31.21 3.35
4183 4826 6.208204 GCATCAAATGATTTATACCAGCCTCT 59.792 38.462 0.00 0.00 31.21 3.69
4191 4835 7.912949 TTCGCAAGCATCAAATGATTTATAC 57.087 32.000 0.00 0.00 36.64 1.47
4204 4848 4.795278 CCAGTAAAAAGATTCGCAAGCATC 59.205 41.667 0.00 0.00 40.48 3.91
4212 4856 7.526608 TGACTTTATGCCAGTAAAAAGATTCG 58.473 34.615 0.00 0.00 33.98 3.34
4247 4893 2.294791 TGTGGGGTGAATTTAGTTTGCG 59.705 45.455 0.00 0.00 0.00 4.85
4252 4898 5.887754 ACAGTTATGTGGGGTGAATTTAGT 58.112 37.500 0.00 0.00 38.57 2.24
4257 4903 3.265737 TGCTACAGTTATGTGGGGTGAAT 59.734 43.478 0.00 0.00 40.79 2.57
4262 4908 3.389329 AGATCTGCTACAGTTATGTGGGG 59.611 47.826 0.00 0.00 40.79 4.96
4263 4909 4.679373 AGATCTGCTACAGTTATGTGGG 57.321 45.455 0.00 0.00 40.79 4.61
4292 4938 8.902806 AGAAATCAGAACAACAACATTGTCTAA 58.097 29.630 0.00 0.00 41.31 2.10
4294 4940 7.198390 CAGAAATCAGAACAACAACATTGTCT 58.802 34.615 0.00 0.00 41.31 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.