Multiple sequence alignment - TraesCS2B01G592800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G592800 chr2B 100.000 2390 0 0 1 2390 777619914 777617525 0.000000e+00 4414.0
1 TraesCS2B01G592800 chr2B 79.822 1348 142 66 685 1970 777549807 777548528 0.000000e+00 863.0
2 TraesCS2B01G592800 chr2B 80.080 999 91 55 857 1808 777659098 777658161 0.000000e+00 643.0
3 TraesCS2B01G592800 chr2B 77.933 861 100 46 604 1440 777635553 777634759 3.200000e-124 455.0
4 TraesCS2B01G592800 chr2B 76.451 913 107 62 685 1550 777522238 777521387 1.970000e-106 396.0
5 TraesCS2B01G592800 chr2B 80.164 489 53 23 224 688 777608068 777607600 2.620000e-85 326.0
6 TraesCS2B01G592800 chr2B 91.045 134 12 0 911 1044 777605830 777605697 6.000000e-42 182.0
7 TraesCS2B01G592800 chr2B 100.000 41 0 0 1885 1925 777605649 777605609 2.910000e-10 76.8
8 TraesCS2B01G592800 chr2B 100.000 38 0 0 2690 2727 777617225 777617188 1.350000e-08 71.3
9 TraesCS2B01G592800 chr2D 84.848 1881 145 72 1 1795 634576529 634574703 0.000000e+00 1766.0
10 TraesCS2B01G592800 chr2D 82.027 1174 109 49 694 1797 634482759 634481618 0.000000e+00 905.0
11 TraesCS2B01G592800 chr2D 77.267 1522 167 85 511 1928 634659331 634657885 0.000000e+00 728.0
12 TraesCS2B01G592800 chr2D 81.585 820 91 24 1176 1960 634556415 634555621 8.290000e-175 623.0
13 TraesCS2B01G592800 chr2D 92.353 170 13 0 1829 1998 634574705 634574536 2.710000e-60 243.0
14 TraesCS2B01G592800 chr2D 77.124 306 28 20 415 690 634483087 634482794 3.660000e-29 139.0
15 TraesCS2B01G592800 chr2D 91.549 71 5 1 1 70 634659704 634659634 2.240000e-16 97.1
16 TraesCS2B01G592800 chr2A 80.846 1300 141 56 685 1918 778788578 778789835 0.000000e+00 922.0
17 TraesCS2B01G592800 chr2A 80.831 1179 122 59 685 1801 778914421 778915557 0.000000e+00 830.0
18 TraesCS2B01G592800 chr2A 79.731 1263 128 63 783 1974 778876132 778877337 0.000000e+00 797.0
19 TraesCS2B01G592800 chr2A 78.956 1245 116 66 761 1942 778759812 778760973 0.000000e+00 713.0
20 TraesCS2B01G592800 chr2A 81.726 788 83 26 1176 1927 778827458 778828220 3.890000e-168 601.0
21 TraesCS2B01G592800 chr2A 85.838 579 31 14 131 688 778787987 778788535 3.940000e-158 568.0
22 TraesCS2B01G592800 chr2A 85.653 467 26 15 1549 1998 778814331 778814773 1.150000e-123 453.0
23 TraesCS2B01G592800 chr2A 78.454 427 45 22 685 1080 778826971 778827381 4.540000e-58 235.0
24 TraesCS2B01G592800 chr2A 85.430 151 11 4 1 140 778787815 778787965 2.190000e-31 147.0
25 TraesCS2B01G592800 chr2A 83.688 141 7 5 685 820 778814189 778814318 4.770000e-23 119.0
26 TraesCS2B01G592800 chr2A 81.529 157 10 14 1996 2148 703708262 703708403 7.980000e-21 111.0
27 TraesCS2B01G592800 chr6B 96.234 239 9 0 2152 2390 85136637 85136399 2.550000e-105 392.0
28 TraesCS2B01G592800 chr6B 80.392 153 20 8 1997 2147 712247177 712247033 1.030000e-19 108.0
29 TraesCS2B01G592800 chr7D 95.397 239 11 0 2152 2390 382081433 382081671 5.510000e-102 381.0
30 TraesCS2B01G592800 chr7D 95.397 239 11 0 2152 2390 626719561 626719323 5.510000e-102 381.0
31 TraesCS2B01G592800 chr4D 95.397 239 11 0 2152 2390 134954646 134954884 5.510000e-102 381.0
32 TraesCS2B01G592800 chr4D 95.397 239 11 0 2152 2390 414808045 414808283 5.510000e-102 381.0
33 TraesCS2B01G592800 chr3D 95.397 239 11 0 2152 2390 501870271 501870509 5.510000e-102 381.0
34 TraesCS2B01G592800 chr3D 95.397 239 11 0 2152 2390 602868126 602867888 5.510000e-102 381.0
35 TraesCS2B01G592800 chr3D 82.051 156 12 10 1997 2150 376343427 376343286 4.770000e-23 119.0
36 TraesCS2B01G592800 chr3D 80.537 149 18 7 1997 2144 613828298 613828436 1.340000e-18 104.0
37 TraesCS2B01G592800 chr3D 80.795 151 11 14 1997 2145 449740443 449740309 4.800000e-18 102.0
38 TraesCS2B01G592800 chr3A 95.397 239 11 0 2152 2390 209420701 209420463 5.510000e-102 381.0
39 TraesCS2B01G592800 chr1A 95.397 239 11 0 2152 2390 271751398 271751160 5.510000e-102 381.0
40 TraesCS2B01G592800 chr1A 80.263 152 17 10 1997 2147 357768979 357768840 4.800000e-18 102.0
41 TraesCS2B01G592800 chr4B 82.119 151 13 11 1997 2144 66169147 66169286 1.720000e-22 117.0
42 TraesCS2B01G592800 chr4B 79.641 167 16 11 1985 2145 412216532 412216686 1.340000e-18 104.0
43 TraesCS2B01G592800 chr7B 81.457 151 12 13 1997 2145 12186452 12186588 2.870000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G592800 chr2B 777617188 777619914 2726 True 2242.650000 4414 100.0000 1 2727 2 chr2B.!!$R6 2726
1 TraesCS2B01G592800 chr2B 777548528 777549807 1279 True 863.000000 863 79.8220 685 1970 1 chr2B.!!$R2 1285
2 TraesCS2B01G592800 chr2B 777658161 777659098 937 True 643.000000 643 80.0800 857 1808 1 chr2B.!!$R4 951
3 TraesCS2B01G592800 chr2B 777634759 777635553 794 True 455.000000 455 77.9330 604 1440 1 chr2B.!!$R3 836
4 TraesCS2B01G592800 chr2B 777521387 777522238 851 True 396.000000 396 76.4510 685 1550 1 chr2B.!!$R1 865
5 TraesCS2B01G592800 chr2D 634574536 634576529 1993 True 1004.500000 1766 88.6005 1 1998 2 chr2D.!!$R3 1997
6 TraesCS2B01G592800 chr2D 634555621 634556415 794 True 623.000000 623 81.5850 1176 1960 1 chr2D.!!$R1 784
7 TraesCS2B01G592800 chr2D 634481618 634483087 1469 True 522.000000 905 79.5755 415 1797 2 chr2D.!!$R2 1382
8 TraesCS2B01G592800 chr2D 634657885 634659704 1819 True 412.550000 728 84.4080 1 1928 2 chr2D.!!$R4 1927
9 TraesCS2B01G592800 chr2A 778914421 778915557 1136 False 830.000000 830 80.8310 685 1801 1 chr2A.!!$F4 1116
10 TraesCS2B01G592800 chr2A 778876132 778877337 1205 False 797.000000 797 79.7310 783 1974 1 chr2A.!!$F3 1191
11 TraesCS2B01G592800 chr2A 778759812 778760973 1161 False 713.000000 713 78.9560 761 1942 1 chr2A.!!$F2 1181
12 TraesCS2B01G592800 chr2A 778787815 778789835 2020 False 545.666667 922 84.0380 1 1918 3 chr2A.!!$F5 1917
13 TraesCS2B01G592800 chr2A 778826971 778828220 1249 False 418.000000 601 80.0900 685 1927 2 chr2A.!!$F7 1242
14 TraesCS2B01G592800 chr2A 778814189 778814773 584 False 286.000000 453 84.6705 685 1998 2 chr2A.!!$F6 1313

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
101 119 0.040870 CGACGAGCAGAGCATACGAT 60.041 55.0 0.0 0.0 0.00 3.73 F
847 1072 0.325933 CCCATCCAGCTCACACTGAA 59.674 55.0 0.0 0.0 40.25 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1103 1433 0.243907 TACGTGTTGAGGAGAGCAGC 59.756 55.0 0.00 0.00 0.00 5.25 R
2289 2818 0.039180 TGGTCGGAAGCTAGACTCCA 59.961 55.0 14.04 6.38 37.52 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.157120 CCGACCATGTCCCCCGTC 62.157 72.222 0.00 0.00 0.00 4.79
64 71 2.359169 CCTAGCTCGCCAACCTCCA 61.359 63.158 0.00 0.00 0.00 3.86
101 119 0.040870 CGACGAGCAGAGCATACGAT 60.041 55.000 0.00 0.00 0.00 3.73
102 120 1.403493 GACGAGCAGAGCATACGATG 58.597 55.000 0.00 0.00 0.00 3.84
181 230 1.588667 GCACGCAAAACACAGTGGG 60.589 57.895 5.31 0.00 35.35 4.61
193 242 0.627451 ACAGTGGGATGGATGCATGT 59.373 50.000 2.46 0.00 0.00 3.21
205 254 1.291184 ATGCATGTGTCGGTGTCACG 61.291 55.000 0.00 0.00 38.48 4.35
282 331 1.723870 GGCAGATGTTGATGCGACC 59.276 57.895 0.00 0.00 43.49 4.79
361 410 1.202302 ACACATCACAGTATCTCGGCG 60.202 52.381 0.00 0.00 0.00 6.46
393 442 1.001706 GAGGACGTCTACATGCGCATA 60.002 52.381 24.84 7.75 0.00 3.14
504 576 4.796495 GTCATGGACACCCGGCCC 62.796 72.222 0.00 0.00 34.29 5.80
785 982 0.661780 GCTCCCGTCGATCGATTGAG 60.662 60.000 22.50 24.14 42.86 3.02
847 1072 0.325933 CCCATCCAGCTCACACTGAA 59.674 55.000 0.00 0.00 40.25 3.02
848 1073 1.271543 CCCATCCAGCTCACACTGAAA 60.272 52.381 0.00 0.00 40.25 2.69
962 1257 1.740025 CTTCAGCCCCTTTTAAGCGAG 59.260 52.381 0.00 0.00 0.00 5.03
1005 1308 4.133796 GCACCGCAAAGGATGGCC 62.134 66.667 0.00 0.00 45.00 5.36
1116 1446 0.895559 TCAGTCGCTGCTCTCCTCAA 60.896 55.000 0.00 0.00 0.00 3.02
1117 1447 0.735632 CAGTCGCTGCTCTCCTCAAC 60.736 60.000 0.00 0.00 0.00 3.18
1118 1448 1.181741 AGTCGCTGCTCTCCTCAACA 61.182 55.000 0.00 0.00 0.00 3.33
1125 1455 1.269723 TGCTCTCCTCAACACGTACTG 59.730 52.381 0.00 0.00 0.00 2.74
1126 1456 1.983972 CTCTCCTCAACACGTACTGC 58.016 55.000 0.00 0.00 0.00 4.40
1128 1458 1.000607 TCTCCTCAACACGTACTGCAC 60.001 52.381 0.00 0.00 0.00 4.57
1160 1503 1.464608 ACTAGCAAGCGACGTACGTAA 59.535 47.619 22.87 0.00 44.60 3.18
1205 1571 3.423154 GCGCGGTGACCAAGAAGG 61.423 66.667 8.83 0.00 45.67 3.46
1351 1741 4.415332 CGCTACTGGACGCACGGT 62.415 66.667 0.00 0.00 0.00 4.83
1449 1857 4.070552 GCCCTCGTCCAACTCGCT 62.071 66.667 0.00 0.00 0.00 4.93
1451 1859 2.125912 CCTCGTCCAACTCGCTGG 60.126 66.667 0.00 0.00 37.87 4.85
1479 1893 2.432628 GGACCTTCAGGACACGCG 60.433 66.667 3.53 3.53 38.94 6.01
1481 1898 3.575351 GACCTTCAGGACACGCGCT 62.575 63.158 5.73 0.00 38.94 5.92
1512 1932 0.901114 TTCCCATTCCTCACCGACGA 60.901 55.000 0.00 0.00 0.00 4.20
1591 2017 4.309950 GCGACCACGGACCACCTT 62.310 66.667 0.00 0.00 40.15 3.50
1681 2125 4.162690 GACTTCGGCGGCCTGGAT 62.163 66.667 18.34 0.00 0.00 3.41
1697 2153 4.101448 ATCTCACCTGGCCACCGC 62.101 66.667 0.00 0.00 0.00 5.68
1746 2207 1.733041 CGGCGTCGTCATGTCAGTT 60.733 57.895 0.00 0.00 0.00 3.16
1832 2319 1.066645 ACGGGAAATTGTACGTCTCCC 60.067 52.381 10.62 10.62 42.12 4.30
1977 2502 2.028876 ACTTTTCCTCGTGGTTTTGGG 58.971 47.619 2.99 0.00 34.23 4.12
1984 2509 0.035739 TCGTGGTTTTGGGGCTCTAC 59.964 55.000 0.00 0.00 0.00 2.59
1990 2519 4.709886 GTGGTTTTGGGGCTCTACATAAAT 59.290 41.667 0.00 0.00 0.00 1.40
1998 2527 5.304614 TGGGGCTCTACATAAATCTCAGTAC 59.695 44.000 0.00 0.00 0.00 2.73
1999 2528 5.540719 GGGGCTCTACATAAATCTCAGTACT 59.459 44.000 0.00 0.00 0.00 2.73
2000 2529 6.294843 GGGGCTCTACATAAATCTCAGTACTC 60.295 46.154 0.00 0.00 0.00 2.59
2001 2530 6.294843 GGGCTCTACATAAATCTCAGTACTCC 60.295 46.154 0.00 0.00 0.00 3.85
2002 2531 6.294843 GGCTCTACATAAATCTCAGTACTCCC 60.295 46.154 0.00 0.00 0.00 4.30
2003 2532 6.492087 GCTCTACATAAATCTCAGTACTCCCT 59.508 42.308 0.00 0.00 0.00 4.20
2004 2533 7.308951 GCTCTACATAAATCTCAGTACTCCCTC 60.309 44.444 0.00 0.00 0.00 4.30
2005 2534 7.005296 TCTACATAAATCTCAGTACTCCCTCC 58.995 42.308 0.00 0.00 0.00 4.30
2006 2535 4.585162 ACATAAATCTCAGTACTCCCTCCG 59.415 45.833 0.00 0.00 0.00 4.63
2007 2536 2.830651 AATCTCAGTACTCCCTCCGT 57.169 50.000 0.00 0.00 0.00 4.69
2008 2537 2.830651 ATCTCAGTACTCCCTCCGTT 57.169 50.000 0.00 0.00 0.00 4.44
2009 2538 2.125773 TCTCAGTACTCCCTCCGTTC 57.874 55.000 0.00 0.00 0.00 3.95
2010 2539 1.104630 CTCAGTACTCCCTCCGTTCC 58.895 60.000 0.00 0.00 0.00 3.62
2011 2540 0.702902 TCAGTACTCCCTCCGTTCCT 59.297 55.000 0.00 0.00 0.00 3.36
2012 2541 1.918262 TCAGTACTCCCTCCGTTCCTA 59.082 52.381 0.00 0.00 0.00 2.94
2013 2542 2.309755 TCAGTACTCCCTCCGTTCCTAA 59.690 50.000 0.00 0.00 0.00 2.69
2014 2543 3.094572 CAGTACTCCCTCCGTTCCTAAA 58.905 50.000 0.00 0.00 0.00 1.85
2015 2544 3.705072 CAGTACTCCCTCCGTTCCTAAAT 59.295 47.826 0.00 0.00 0.00 1.40
2016 2545 4.891756 CAGTACTCCCTCCGTTCCTAAATA 59.108 45.833 0.00 0.00 0.00 1.40
2017 2546 5.539193 CAGTACTCCCTCCGTTCCTAAATAT 59.461 44.000 0.00 0.00 0.00 1.28
2018 2547 6.718454 CAGTACTCCCTCCGTTCCTAAATATA 59.282 42.308 0.00 0.00 0.00 0.86
2019 2548 7.232127 CAGTACTCCCTCCGTTCCTAAATATAA 59.768 40.741 0.00 0.00 0.00 0.98
2020 2549 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2021 2550 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2022 2551 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2023 2552 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2024 2553 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2025 2554 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2026 2555 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
2027 2556 9.043079 CCTCCGTTCCTAAATATAAGTCTTTTC 57.957 37.037 0.00 0.00 0.00 2.29
2028 2557 9.819267 CTCCGTTCCTAAATATAAGTCTTTTCT 57.181 33.333 0.00 0.00 0.00 2.52
2060 2589 9.475620 TCAATAAAAGACTACTCCTACATGAGA 57.524 33.333 0.00 0.00 36.22 3.27
2063 2592 5.845391 AAGACTACTCCTACATGAGAAGC 57.155 43.478 0.00 0.00 36.22 3.86
2064 2593 4.861196 AGACTACTCCTACATGAGAAGCA 58.139 43.478 0.00 0.00 36.22 3.91
2065 2594 5.265191 AGACTACTCCTACATGAGAAGCAA 58.735 41.667 0.00 0.00 36.22 3.91
2066 2595 5.717178 AGACTACTCCTACATGAGAAGCAAA 59.283 40.000 0.00 0.00 36.22 3.68
2067 2596 6.211584 AGACTACTCCTACATGAGAAGCAAAA 59.788 38.462 0.00 0.00 36.22 2.44
2068 2597 6.951971 ACTACTCCTACATGAGAAGCAAAAT 58.048 36.000 0.00 0.00 36.22 1.82
2069 2598 8.079211 ACTACTCCTACATGAGAAGCAAAATA 57.921 34.615 0.00 0.00 36.22 1.40
2070 2599 8.540388 ACTACTCCTACATGAGAAGCAAAATAA 58.460 33.333 0.00 0.00 36.22 1.40
2071 2600 7.856145 ACTCCTACATGAGAAGCAAAATAAG 57.144 36.000 0.00 0.00 36.22 1.73
2072 2601 7.398024 ACTCCTACATGAGAAGCAAAATAAGT 58.602 34.615 0.00 0.00 36.22 2.24
2073 2602 8.540388 ACTCCTACATGAGAAGCAAAATAAGTA 58.460 33.333 0.00 0.00 36.22 2.24
2074 2603 9.383519 CTCCTACATGAGAAGCAAAATAAGTAA 57.616 33.333 0.00 0.00 34.11 2.24
2075 2604 9.733556 TCCTACATGAGAAGCAAAATAAGTAAA 57.266 29.630 0.00 0.00 0.00 2.01
2101 2630 8.839310 TCTACACTCTAAAGTCTAAACTACGT 57.161 34.615 0.00 0.00 33.48 3.57
2102 2631 9.277783 TCTACACTCTAAAGTCTAAACTACGTT 57.722 33.333 0.00 0.00 33.48 3.99
2103 2632 9.890352 CTACACTCTAAAGTCTAAACTACGTTT 57.110 33.333 0.00 0.00 35.09 3.60
2182 2711 7.830099 ATCTAGCATAAAAGGAGAAATTGGG 57.170 36.000 0.00 0.00 0.00 4.12
2183 2712 4.743057 AGCATAAAAGGAGAAATTGGGC 57.257 40.909 0.00 0.00 0.00 5.36
2184 2713 3.452264 AGCATAAAAGGAGAAATTGGGCC 59.548 43.478 0.00 0.00 0.00 5.80
2185 2714 3.452264 GCATAAAAGGAGAAATTGGGCCT 59.548 43.478 4.53 0.00 0.00 5.19
2186 2715 4.649218 GCATAAAAGGAGAAATTGGGCCTA 59.351 41.667 4.53 0.00 0.00 3.93
2187 2716 5.305386 GCATAAAAGGAGAAATTGGGCCTAT 59.695 40.000 4.53 0.00 0.00 2.57
2188 2717 6.183361 GCATAAAAGGAGAAATTGGGCCTATT 60.183 38.462 7.42 7.42 0.00 1.73
2189 2718 7.635750 GCATAAAAGGAGAAATTGGGCCTATTT 60.636 37.037 23.00 23.00 0.00 1.40
2190 2719 8.923270 CATAAAAGGAGAAATTGGGCCTATTTA 58.077 33.333 22.87 8.05 0.00 1.40
2191 2720 7.995052 AAAAGGAGAAATTGGGCCTATTTAT 57.005 32.000 22.87 20.54 0.00 1.40
2192 2721 7.603180 AAAGGAGAAATTGGGCCTATTTATC 57.397 36.000 28.38 28.38 34.23 1.75
2193 2722 6.279813 AGGAGAAATTGGGCCTATTTATCA 57.720 37.500 33.12 6.26 35.80 2.15
2194 2723 6.071320 AGGAGAAATTGGGCCTATTTATCAC 58.929 40.000 33.12 25.69 35.80 3.06
2195 2724 6.071320 GGAGAAATTGGGCCTATTTATCACT 58.929 40.000 33.12 22.86 35.80 3.41
2196 2725 6.551227 GGAGAAATTGGGCCTATTTATCACTT 59.449 38.462 33.12 12.62 35.80 3.16
2197 2726 7.069950 GGAGAAATTGGGCCTATTTATCACTTT 59.930 37.037 33.12 12.62 35.80 2.66
2198 2727 8.379428 AGAAATTGGGCCTATTTATCACTTTT 57.621 30.769 22.87 1.92 0.00 2.27
2199 2728 8.260114 AGAAATTGGGCCTATTTATCACTTTTG 58.740 33.333 22.87 0.00 0.00 2.44
2200 2729 5.930837 TTGGGCCTATTTATCACTTTTGG 57.069 39.130 4.53 0.00 0.00 3.28
2201 2730 4.941713 TGGGCCTATTTATCACTTTTGGT 58.058 39.130 4.53 0.00 0.00 3.67
2202 2731 6.080969 TGGGCCTATTTATCACTTTTGGTA 57.919 37.500 4.53 0.00 0.00 3.25
2203 2732 5.889289 TGGGCCTATTTATCACTTTTGGTAC 59.111 40.000 4.53 0.00 0.00 3.34
2204 2733 5.301045 GGGCCTATTTATCACTTTTGGTACC 59.699 44.000 4.43 4.43 0.00 3.34
2205 2734 6.127101 GGCCTATTTATCACTTTTGGTACCT 58.873 40.000 14.36 0.00 0.00 3.08
2206 2735 7.284820 GGCCTATTTATCACTTTTGGTACCTA 58.715 38.462 14.36 1.78 0.00 3.08
2207 2736 7.776500 GGCCTATTTATCACTTTTGGTACCTAA 59.224 37.037 14.36 9.33 0.00 2.69
2208 2737 8.618677 GCCTATTTATCACTTTTGGTACCTAAC 58.381 37.037 14.36 0.00 0.00 2.34
2222 2751 5.927281 GTACCTAACCACATGAACTAGGA 57.073 43.478 16.48 3.98 34.43 2.94
2223 2752 6.290294 GTACCTAACCACATGAACTAGGAA 57.710 41.667 16.48 0.00 34.43 3.36
2224 2753 6.885922 GTACCTAACCACATGAACTAGGAAT 58.114 40.000 16.48 3.99 34.43 3.01
2225 2754 8.015185 GTACCTAACCACATGAACTAGGAATA 57.985 38.462 16.48 3.31 34.43 1.75
2226 2755 7.504926 ACCTAACCACATGAACTAGGAATAA 57.495 36.000 16.48 0.00 34.43 1.40
2227 2756 8.102484 ACCTAACCACATGAACTAGGAATAAT 57.898 34.615 16.48 0.00 34.43 1.28
2228 2757 7.993183 ACCTAACCACATGAACTAGGAATAATG 59.007 37.037 16.48 0.00 34.43 1.90
2229 2758 7.445402 CCTAACCACATGAACTAGGAATAATGG 59.555 40.741 0.00 0.00 32.39 3.16
2230 2759 5.133221 ACCACATGAACTAGGAATAATGGC 58.867 41.667 0.00 0.00 0.00 4.40
2231 2760 5.103940 ACCACATGAACTAGGAATAATGGCT 60.104 40.000 0.00 0.00 0.00 4.75
2232 2761 6.101150 ACCACATGAACTAGGAATAATGGCTA 59.899 38.462 0.00 0.00 0.00 3.93
2233 2762 6.998074 CCACATGAACTAGGAATAATGGCTAA 59.002 38.462 0.00 0.00 0.00 3.09
2234 2763 7.502226 CCACATGAACTAGGAATAATGGCTAAA 59.498 37.037 0.00 0.00 0.00 1.85
2235 2764 9.071276 CACATGAACTAGGAATAATGGCTAAAT 57.929 33.333 0.00 0.00 0.00 1.40
2245 2774 9.660544 AGGAATAATGGCTAAATATTGAAGGTT 57.339 29.630 0.00 0.00 0.00 3.50
2246 2775 9.914131 GGAATAATGGCTAAATATTGAAGGTTC 57.086 33.333 0.00 0.00 0.00 3.62
2251 2780 7.568199 TGGCTAAATATTGAAGGTTCTAAGC 57.432 36.000 0.00 0.00 0.00 3.09
2252 2781 6.546034 TGGCTAAATATTGAAGGTTCTAAGCC 59.454 38.462 0.00 0.00 43.82 4.35
2253 2782 6.546034 GGCTAAATATTGAAGGTTCTAAGCCA 59.454 38.462 0.00 0.00 43.20 4.75
2254 2783 7.231519 GGCTAAATATTGAAGGTTCTAAGCCAT 59.768 37.037 0.00 0.00 43.20 4.40
2255 2784 8.078596 GCTAAATATTGAAGGTTCTAAGCCATG 58.921 37.037 0.00 0.00 0.00 3.66
2256 2785 7.961326 AAATATTGAAGGTTCTAAGCCATGT 57.039 32.000 0.00 0.00 0.00 3.21
2258 2787 9.646522 AAATATTGAAGGTTCTAAGCCATGTAT 57.353 29.630 0.00 0.00 0.00 2.29
2259 2788 8.854614 ATATTGAAGGTTCTAAGCCATGTATC 57.145 34.615 0.00 0.00 0.00 2.24
2260 2789 5.692115 TGAAGGTTCTAAGCCATGTATCA 57.308 39.130 0.00 0.00 0.00 2.15
2261 2790 5.674525 TGAAGGTTCTAAGCCATGTATCAG 58.325 41.667 0.00 0.00 0.00 2.90
2262 2791 5.425217 TGAAGGTTCTAAGCCATGTATCAGA 59.575 40.000 0.00 0.00 0.00 3.27
2263 2792 5.543507 AGGTTCTAAGCCATGTATCAGAG 57.456 43.478 0.00 0.00 0.00 3.35
2264 2793 4.061596 GGTTCTAAGCCATGTATCAGAGC 58.938 47.826 0.00 0.00 0.00 4.09
2265 2794 4.061596 GTTCTAAGCCATGTATCAGAGCC 58.938 47.826 0.00 0.00 0.00 4.70
2266 2795 2.297315 TCTAAGCCATGTATCAGAGCCG 59.703 50.000 0.00 0.00 0.00 5.52
2267 2796 0.107456 AAGCCATGTATCAGAGCCGG 59.893 55.000 0.00 0.00 0.00 6.13
2268 2797 1.050988 AGCCATGTATCAGAGCCGGT 61.051 55.000 1.90 0.00 0.00 5.28
2269 2798 0.179045 GCCATGTATCAGAGCCGGTT 60.179 55.000 1.90 0.00 0.00 4.44
2270 2799 1.070134 GCCATGTATCAGAGCCGGTTA 59.930 52.381 1.90 0.00 0.00 2.85
2271 2800 2.289694 GCCATGTATCAGAGCCGGTTAT 60.290 50.000 1.90 0.00 0.00 1.89
2272 2801 3.807209 GCCATGTATCAGAGCCGGTTATT 60.807 47.826 1.90 0.00 0.00 1.40
2273 2802 4.389374 CCATGTATCAGAGCCGGTTATTT 58.611 43.478 1.90 0.00 0.00 1.40
2274 2803 4.214119 CCATGTATCAGAGCCGGTTATTTG 59.786 45.833 1.90 0.00 0.00 2.32
2275 2804 4.746535 TGTATCAGAGCCGGTTATTTGA 57.253 40.909 1.90 2.50 0.00 2.69
2276 2805 4.693283 TGTATCAGAGCCGGTTATTTGAG 58.307 43.478 1.90 0.00 0.00 3.02
2277 2806 3.914426 ATCAGAGCCGGTTATTTGAGT 57.086 42.857 1.90 0.00 0.00 3.41
2278 2807 5.361571 TGTATCAGAGCCGGTTATTTGAGTA 59.638 40.000 1.90 0.00 0.00 2.59
2279 2808 5.552870 ATCAGAGCCGGTTATTTGAGTAT 57.447 39.130 1.90 0.00 0.00 2.12
2280 2809 4.945246 TCAGAGCCGGTTATTTGAGTATC 58.055 43.478 1.90 0.00 0.00 2.24
2281 2810 3.736252 CAGAGCCGGTTATTTGAGTATCG 59.264 47.826 1.90 0.00 38.61 2.92
2282 2811 3.635373 AGAGCCGGTTATTTGAGTATCGA 59.365 43.478 1.90 0.00 38.61 3.59
2283 2812 4.281182 AGAGCCGGTTATTTGAGTATCGAT 59.719 41.667 1.90 2.16 38.61 3.59
2284 2813 4.307432 AGCCGGTTATTTGAGTATCGATG 58.693 43.478 8.54 0.00 38.61 3.84
2285 2814 4.056050 GCCGGTTATTTGAGTATCGATGT 58.944 43.478 8.54 0.00 38.61 3.06
2286 2815 4.510340 GCCGGTTATTTGAGTATCGATGTT 59.490 41.667 8.54 0.00 38.61 2.71
2287 2816 5.558273 GCCGGTTATTTGAGTATCGATGTTG 60.558 44.000 8.54 0.00 38.61 3.33
2288 2817 5.522460 CCGGTTATTTGAGTATCGATGTTGT 59.478 40.000 8.54 0.00 38.61 3.32
2289 2818 6.036735 CCGGTTATTTGAGTATCGATGTTGTT 59.963 38.462 8.54 0.00 38.61 2.83
2290 2819 6.899771 CGGTTATTTGAGTATCGATGTTGTTG 59.100 38.462 8.54 0.00 38.61 3.33
2291 2820 7.186804 GGTTATTTGAGTATCGATGTTGTTGG 58.813 38.462 8.54 0.00 38.61 3.77
2292 2821 7.065324 GGTTATTTGAGTATCGATGTTGTTGGA 59.935 37.037 8.54 0.00 38.61 3.53
2293 2822 6.668541 ATTTGAGTATCGATGTTGTTGGAG 57.331 37.500 8.54 0.00 38.61 3.86
2294 2823 4.801330 TGAGTATCGATGTTGTTGGAGT 57.199 40.909 8.54 0.00 38.61 3.85
2295 2824 4.744570 TGAGTATCGATGTTGTTGGAGTC 58.255 43.478 8.54 0.00 38.61 3.36
2296 2825 4.462834 TGAGTATCGATGTTGTTGGAGTCT 59.537 41.667 8.54 0.00 38.61 3.24
2297 2826 5.650703 TGAGTATCGATGTTGTTGGAGTCTA 59.349 40.000 8.54 0.00 38.61 2.59
2298 2827 6.137794 AGTATCGATGTTGTTGGAGTCTAG 57.862 41.667 8.54 0.00 0.00 2.43
2299 2828 3.232213 TCGATGTTGTTGGAGTCTAGC 57.768 47.619 0.00 0.00 0.00 3.42
2300 2829 2.826128 TCGATGTTGTTGGAGTCTAGCT 59.174 45.455 0.00 0.00 0.00 3.32
2301 2830 3.258372 TCGATGTTGTTGGAGTCTAGCTT 59.742 43.478 0.00 0.00 0.00 3.74
2302 2831 3.614616 CGATGTTGTTGGAGTCTAGCTTC 59.385 47.826 0.00 0.00 0.00 3.86
2303 2832 3.402628 TGTTGTTGGAGTCTAGCTTCC 57.597 47.619 0.00 0.00 0.00 3.46
2304 2833 2.288825 TGTTGTTGGAGTCTAGCTTCCG 60.289 50.000 0.00 0.00 0.00 4.30
2305 2834 1.919240 TGTTGGAGTCTAGCTTCCGA 58.081 50.000 0.00 0.00 0.00 4.55
2306 2835 1.544691 TGTTGGAGTCTAGCTTCCGAC 59.455 52.381 18.77 18.77 37.21 4.79
2307 2836 1.135053 GTTGGAGTCTAGCTTCCGACC 60.135 57.143 16.37 2.44 31.99 4.79
2308 2837 0.039180 TGGAGTCTAGCTTCCGACCA 59.961 55.000 0.00 0.00 0.00 4.02
2309 2838 1.183549 GGAGTCTAGCTTCCGACCAA 58.816 55.000 0.00 0.00 0.00 3.67
2310 2839 1.757699 GGAGTCTAGCTTCCGACCAAT 59.242 52.381 0.00 0.00 0.00 3.16
2311 2840 2.223852 GGAGTCTAGCTTCCGACCAATC 60.224 54.545 0.00 0.00 0.00 2.67
2312 2841 1.757699 AGTCTAGCTTCCGACCAATCC 59.242 52.381 0.00 0.00 0.00 3.01
2313 2842 0.744874 TCTAGCTTCCGACCAATCCG 59.255 55.000 0.00 0.00 0.00 4.18
2314 2843 0.876342 CTAGCTTCCGACCAATCCGC 60.876 60.000 0.00 0.00 0.00 5.54
2315 2844 1.327690 TAGCTTCCGACCAATCCGCT 61.328 55.000 0.00 0.00 0.00 5.52
2316 2845 1.745489 GCTTCCGACCAATCCGCTT 60.745 57.895 0.00 0.00 0.00 4.68
2317 2846 1.706287 GCTTCCGACCAATCCGCTTC 61.706 60.000 0.00 0.00 0.00 3.86
2318 2847 0.391130 CTTCCGACCAATCCGCTTCA 60.391 55.000 0.00 0.00 0.00 3.02
2319 2848 0.672401 TTCCGACCAATCCGCTTCAC 60.672 55.000 0.00 0.00 0.00 3.18
2320 2849 1.079127 CCGACCAATCCGCTTCACT 60.079 57.895 0.00 0.00 0.00 3.41
2321 2850 0.673644 CCGACCAATCCGCTTCACTT 60.674 55.000 0.00 0.00 0.00 3.16
2322 2851 0.721718 CGACCAATCCGCTTCACTTC 59.278 55.000 0.00 0.00 0.00 3.01
2323 2852 0.721718 GACCAATCCGCTTCACTTCG 59.278 55.000 0.00 0.00 0.00 3.79
2324 2853 0.673644 ACCAATCCGCTTCACTTCGG 60.674 55.000 0.00 0.00 46.52 4.30
2329 2858 4.170723 CGCTTCACTTCGGAGGAC 57.829 61.111 0.00 0.00 0.00 3.85
2330 2859 1.289066 CGCTTCACTTCGGAGGACA 59.711 57.895 0.00 0.00 0.00 4.02
2331 2860 0.108615 CGCTTCACTTCGGAGGACAT 60.109 55.000 0.00 0.00 0.00 3.06
2332 2861 1.134367 CGCTTCACTTCGGAGGACATA 59.866 52.381 0.00 0.00 0.00 2.29
2333 2862 2.416836 CGCTTCACTTCGGAGGACATAA 60.417 50.000 0.00 0.00 0.00 1.90
2334 2863 2.930682 GCTTCACTTCGGAGGACATAAC 59.069 50.000 0.00 0.00 0.00 1.89
2335 2864 3.616560 GCTTCACTTCGGAGGACATAACA 60.617 47.826 0.00 0.00 0.00 2.41
2336 2865 3.868757 TCACTTCGGAGGACATAACAG 57.131 47.619 0.00 0.00 0.00 3.16
2337 2866 2.094182 TCACTTCGGAGGACATAACAGC 60.094 50.000 0.00 0.00 0.00 4.40
2338 2867 2.093973 CACTTCGGAGGACATAACAGCT 60.094 50.000 0.00 0.00 0.00 4.24
2339 2868 2.567615 ACTTCGGAGGACATAACAGCTT 59.432 45.455 0.00 0.00 0.00 3.74
2340 2869 3.767673 ACTTCGGAGGACATAACAGCTTA 59.232 43.478 0.00 0.00 0.00 3.09
2341 2870 4.222145 ACTTCGGAGGACATAACAGCTTAA 59.778 41.667 0.00 0.00 0.00 1.85
2342 2871 4.386867 TCGGAGGACATAACAGCTTAAG 57.613 45.455 0.00 0.00 0.00 1.85
2343 2872 4.021229 TCGGAGGACATAACAGCTTAAGA 58.979 43.478 6.67 0.00 0.00 2.10
2344 2873 4.464951 TCGGAGGACATAACAGCTTAAGAA 59.535 41.667 6.67 0.00 0.00 2.52
2345 2874 4.806247 CGGAGGACATAACAGCTTAAGAAG 59.194 45.833 6.67 0.00 0.00 2.85
2346 2875 5.394224 CGGAGGACATAACAGCTTAAGAAGA 60.394 44.000 6.67 0.00 0.00 2.87
2347 2876 6.407202 GGAGGACATAACAGCTTAAGAAGAA 58.593 40.000 6.67 0.00 0.00 2.52
2348 2877 6.879458 GGAGGACATAACAGCTTAAGAAGAAA 59.121 38.462 6.67 0.00 0.00 2.52
2349 2878 7.554476 GGAGGACATAACAGCTTAAGAAGAAAT 59.446 37.037 6.67 0.00 0.00 2.17
2350 2879 8.499403 AGGACATAACAGCTTAAGAAGAAATC 57.501 34.615 6.67 0.00 0.00 2.17
2351 2880 7.278868 AGGACATAACAGCTTAAGAAGAAATCG 59.721 37.037 6.67 0.00 0.00 3.34
2352 2881 7.277981 GGACATAACAGCTTAAGAAGAAATCGA 59.722 37.037 6.67 0.00 0.00 3.59
2353 2882 8.190888 ACATAACAGCTTAAGAAGAAATCGAG 57.809 34.615 6.67 0.00 0.00 4.04
2354 2883 8.035394 ACATAACAGCTTAAGAAGAAATCGAGA 58.965 33.333 6.67 0.00 0.00 4.04
2355 2884 9.039870 CATAACAGCTTAAGAAGAAATCGAGAT 57.960 33.333 6.67 0.00 0.00 2.75
2356 2885 7.532682 AACAGCTTAAGAAGAAATCGAGATC 57.467 36.000 6.67 0.00 0.00 2.75
2357 2886 6.634805 ACAGCTTAAGAAGAAATCGAGATCA 58.365 36.000 6.67 0.00 0.00 2.92
2358 2887 6.756074 ACAGCTTAAGAAGAAATCGAGATCAG 59.244 38.462 6.67 0.00 0.00 2.90
2359 2888 6.200665 CAGCTTAAGAAGAAATCGAGATCAGG 59.799 42.308 6.67 0.00 0.00 3.86
2360 2889 5.050431 GCTTAAGAAGAAATCGAGATCAGGC 60.050 44.000 6.67 0.00 0.00 4.85
2361 2890 3.467374 AGAAGAAATCGAGATCAGGCC 57.533 47.619 0.00 0.00 0.00 5.19
2362 2891 3.037549 AGAAGAAATCGAGATCAGGCCT 58.962 45.455 0.00 0.00 0.00 5.19
2363 2892 4.219115 AGAAGAAATCGAGATCAGGCCTA 58.781 43.478 3.98 0.00 0.00 3.93
2364 2893 4.837860 AGAAGAAATCGAGATCAGGCCTAT 59.162 41.667 3.98 0.00 0.00 2.57
2365 2894 4.533919 AGAAATCGAGATCAGGCCTATG 57.466 45.455 3.98 0.00 0.00 2.23
2366 2895 3.260380 AGAAATCGAGATCAGGCCTATGG 59.740 47.826 3.98 0.00 0.00 2.74
2367 2896 2.612285 ATCGAGATCAGGCCTATGGA 57.388 50.000 3.98 0.00 0.00 3.41
2368 2897 2.381752 TCGAGATCAGGCCTATGGAA 57.618 50.000 3.98 0.00 0.00 3.53
2369 2898 2.677914 TCGAGATCAGGCCTATGGAAA 58.322 47.619 3.98 0.00 0.00 3.13
2370 2899 2.630098 TCGAGATCAGGCCTATGGAAAG 59.370 50.000 3.98 0.00 0.00 2.62
2371 2900 2.777094 GAGATCAGGCCTATGGAAAGC 58.223 52.381 3.98 0.00 0.00 3.51
2372 2901 1.071385 AGATCAGGCCTATGGAAAGCG 59.929 52.381 3.98 0.00 0.00 4.68
2373 2902 0.536006 ATCAGGCCTATGGAAAGCGC 60.536 55.000 3.98 0.00 0.00 5.92
2374 2903 1.451927 CAGGCCTATGGAAAGCGCA 60.452 57.895 11.47 0.00 0.00 6.09
2375 2904 1.452108 AGGCCTATGGAAAGCGCAC 60.452 57.895 11.47 0.00 0.00 5.34
2376 2905 1.748879 GGCCTATGGAAAGCGCACA 60.749 57.895 11.47 2.95 0.00 4.57
2377 2906 1.429423 GCCTATGGAAAGCGCACAC 59.571 57.895 11.47 0.00 0.00 3.82
2378 2907 1.305219 GCCTATGGAAAGCGCACACA 61.305 55.000 11.47 2.94 0.00 3.72
2379 2908 0.447801 CCTATGGAAAGCGCACACAC 59.552 55.000 11.47 0.00 0.00 3.82
2380 2909 1.155889 CTATGGAAAGCGCACACACA 58.844 50.000 11.47 1.68 0.00 3.72
2381 2910 0.871722 TATGGAAAGCGCACACACAC 59.128 50.000 11.47 0.00 0.00 3.82
2382 2911 2.052237 GGAAAGCGCACACACACG 60.052 61.111 11.47 0.00 0.00 4.49
2711 3240 4.886755 ATTCCCCAGATTGAGGAAATGA 57.113 40.909 0.00 0.00 42.71 2.57
2712 3241 3.652057 TCCCCAGATTGAGGAAATGAC 57.348 47.619 0.00 0.00 0.00 3.06
2713 3242 2.242196 TCCCCAGATTGAGGAAATGACC 59.758 50.000 0.00 0.00 0.00 4.02
2714 3243 2.243221 CCCCAGATTGAGGAAATGACCT 59.757 50.000 0.00 0.00 43.64 3.85
2724 3253 3.883669 AGGAAATGACCTCTCATCTTGC 58.116 45.455 0.00 0.00 35.96 4.01
2725 3254 3.522750 AGGAAATGACCTCTCATCTTGCT 59.477 43.478 0.00 0.00 35.96 3.91
2726 3255 4.018597 AGGAAATGACCTCTCATCTTGCTT 60.019 41.667 0.00 0.00 35.96 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 4.388499 GGACATGGTCGGTGCCGT 62.388 66.667 10.60 0.00 40.74 5.68
32 33 1.503818 GCTAGGCGAGAGAGAGGACG 61.504 65.000 0.00 0.00 0.00 4.79
80 98 1.064946 GTATGCTCTGCTCGTCGCT 59.935 57.895 0.00 0.00 40.11 4.93
181 230 0.659427 CACCGACACATGCATCCATC 59.341 55.000 0.00 0.00 0.00 3.51
193 242 4.934942 CACGCCGTGACACCGACA 62.935 66.667 12.85 0.00 35.23 4.35
330 379 2.595386 TGTGATGTGTGATCGACGAAG 58.405 47.619 0.00 0.00 0.00 3.79
487 559 4.796495 GGGCCGGGTGTCCATGAC 62.796 72.222 2.18 0.00 0.00 3.06
504 576 3.475774 CGAGGAAACCGAACGGCG 61.476 66.667 13.32 4.80 39.32 6.46
668 788 1.134699 CCGGCAGAACAAGATGCTCTA 60.135 52.381 0.00 0.00 42.19 2.43
785 982 0.250209 ATGATGATGGAGCTGACGGC 60.250 55.000 0.00 0.00 42.19 5.68
847 1072 2.026636 AGGAGAGAGTGAGACGTAGCTT 60.027 50.000 0.00 0.00 0.00 3.74
848 1073 1.557832 AGGAGAGAGTGAGACGTAGCT 59.442 52.381 0.00 0.00 0.00 3.32
1005 1308 3.013932 AGGGAGGCAGAAGCTGGG 61.014 66.667 0.00 0.00 41.70 4.45
1103 1433 0.243907 TACGTGTTGAGGAGAGCAGC 59.756 55.000 0.00 0.00 0.00 5.25
1125 1455 1.661112 GCTAGTTCAATGGAGACGTGC 59.339 52.381 0.00 0.00 0.00 5.34
1126 1456 2.959516 TGCTAGTTCAATGGAGACGTG 58.040 47.619 0.00 0.00 0.00 4.49
1128 1458 2.349886 GCTTGCTAGTTCAATGGAGACG 59.650 50.000 0.00 0.00 0.00 4.18
1131 1461 2.349886 GTCGCTTGCTAGTTCAATGGAG 59.650 50.000 0.00 0.00 0.00 3.86
1132 1462 2.346803 GTCGCTTGCTAGTTCAATGGA 58.653 47.619 0.00 0.00 0.00 3.41
1133 1463 1.061131 CGTCGCTTGCTAGTTCAATGG 59.939 52.381 0.00 0.00 0.00 3.16
1134 1464 1.726791 ACGTCGCTTGCTAGTTCAATG 59.273 47.619 0.00 0.00 0.00 2.82
1135 1465 2.080286 ACGTCGCTTGCTAGTTCAAT 57.920 45.000 0.00 0.00 0.00 2.57
1205 1571 2.125753 CTGCTGACTCTGGCCGTC 60.126 66.667 0.00 0.00 0.00 4.79
1467 1881 4.373116 GGGAGCGCGTGTCCTGAA 62.373 66.667 23.48 0.00 34.16 3.02
1491 1911 0.613777 GTCGGTGAGGAATGGGAAGT 59.386 55.000 0.00 0.00 0.00 3.01
1721 2180 1.370535 ATGACGACGCCGATCATCG 60.371 57.895 0.00 0.00 41.60 3.84
1977 2502 6.294843 GGGAGTACTGAGATTTATGTAGAGCC 60.295 46.154 0.00 0.00 0.00 4.70
1984 2509 4.585162 ACGGAGGGAGTACTGAGATTTATG 59.415 45.833 0.00 0.00 0.00 1.90
1990 2519 1.340795 GGAACGGAGGGAGTACTGAGA 60.341 57.143 0.00 0.00 0.00 3.27
1998 2527 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
1999 2528 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2000 2529 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2001 2530 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
2002 2531 9.819267 AGAAAAGACTTATATTTAGGAACGGAG 57.181 33.333 0.00 0.00 0.00 4.63
2034 2563 9.475620 TCTCATGTAGGAGTAGTCTTTTATTGA 57.524 33.333 0.00 0.00 36.30 2.57
2037 2566 8.417884 GCTTCTCATGTAGGAGTAGTCTTTTAT 58.582 37.037 0.00 0.00 35.47 1.40
2038 2567 7.396339 TGCTTCTCATGTAGGAGTAGTCTTTTA 59.604 37.037 0.00 0.00 35.47 1.52
2039 2568 6.211584 TGCTTCTCATGTAGGAGTAGTCTTTT 59.788 38.462 0.00 0.00 35.47 2.27
2040 2569 5.717178 TGCTTCTCATGTAGGAGTAGTCTTT 59.283 40.000 0.00 0.00 35.47 2.52
2041 2570 5.265191 TGCTTCTCATGTAGGAGTAGTCTT 58.735 41.667 0.00 0.00 35.47 3.01
2042 2571 4.861196 TGCTTCTCATGTAGGAGTAGTCT 58.139 43.478 0.00 0.00 35.47 3.24
2043 2572 5.584253 TTGCTTCTCATGTAGGAGTAGTC 57.416 43.478 0.00 0.00 35.47 2.59
2044 2573 6.360370 TTTTGCTTCTCATGTAGGAGTAGT 57.640 37.500 0.00 0.00 35.47 2.73
2045 2574 8.948631 TTATTTTGCTTCTCATGTAGGAGTAG 57.051 34.615 0.00 0.00 35.94 2.57
2046 2575 8.540388 ACTTATTTTGCTTCTCATGTAGGAGTA 58.460 33.333 0.00 0.00 32.67 2.59
2047 2576 7.398024 ACTTATTTTGCTTCTCATGTAGGAGT 58.602 34.615 0.00 0.00 32.67 3.85
2048 2577 7.856145 ACTTATTTTGCTTCTCATGTAGGAG 57.144 36.000 0.00 0.00 33.34 3.69
2049 2578 9.733556 TTTACTTATTTTGCTTCTCATGTAGGA 57.266 29.630 0.00 0.00 0.00 2.94
2075 2604 9.447157 ACGTAGTTTAGACTTTAGAGTGTAGAT 57.553 33.333 0.00 0.00 37.78 1.98
2076 2605 8.839310 ACGTAGTTTAGACTTTAGAGTGTAGA 57.161 34.615 0.00 0.00 37.78 2.59
2156 2685 8.699130 CCCAATTTCTCCTTTTATGCTAGATTT 58.301 33.333 0.00 0.00 0.00 2.17
2157 2686 7.201947 GCCCAATTTCTCCTTTTATGCTAGATT 60.202 37.037 0.00 0.00 0.00 2.40
2158 2687 6.266330 GCCCAATTTCTCCTTTTATGCTAGAT 59.734 38.462 0.00 0.00 0.00 1.98
2159 2688 5.594317 GCCCAATTTCTCCTTTTATGCTAGA 59.406 40.000 0.00 0.00 0.00 2.43
2160 2689 5.221322 GGCCCAATTTCTCCTTTTATGCTAG 60.221 44.000 0.00 0.00 0.00 3.42
2161 2690 4.649218 GGCCCAATTTCTCCTTTTATGCTA 59.351 41.667 0.00 0.00 0.00 3.49
2162 2691 3.452264 GGCCCAATTTCTCCTTTTATGCT 59.548 43.478 0.00 0.00 0.00 3.79
2163 2692 3.452264 AGGCCCAATTTCTCCTTTTATGC 59.548 43.478 0.00 0.00 0.00 3.14
2164 2693 6.983906 ATAGGCCCAATTTCTCCTTTTATG 57.016 37.500 0.00 0.00 0.00 1.90
2165 2694 7.995052 AAATAGGCCCAATTTCTCCTTTTAT 57.005 32.000 0.00 0.00 0.00 1.40
2166 2695 9.143155 GATAAATAGGCCCAATTTCTCCTTTTA 57.857 33.333 15.12 0.00 0.00 1.52
2167 2696 7.623278 TGATAAATAGGCCCAATTTCTCCTTTT 59.377 33.333 15.12 0.00 0.00 2.27
2168 2697 7.069950 GTGATAAATAGGCCCAATTTCTCCTTT 59.930 37.037 15.12 0.00 0.00 3.11
2169 2698 6.551227 GTGATAAATAGGCCCAATTTCTCCTT 59.449 38.462 15.12 0.00 0.00 3.36
2170 2699 6.071320 GTGATAAATAGGCCCAATTTCTCCT 58.929 40.000 15.12 2.41 0.00 3.69
2171 2700 6.071320 AGTGATAAATAGGCCCAATTTCTCC 58.929 40.000 15.12 10.09 0.00 3.71
2172 2701 7.588497 AAGTGATAAATAGGCCCAATTTCTC 57.412 36.000 15.12 14.92 0.00 2.87
2173 2702 7.978099 AAAGTGATAAATAGGCCCAATTTCT 57.022 32.000 15.12 7.62 0.00 2.52
2174 2703 7.495606 CCAAAAGTGATAAATAGGCCCAATTTC 59.504 37.037 15.12 5.38 0.00 2.17
2175 2704 7.037658 ACCAAAAGTGATAAATAGGCCCAATTT 60.038 33.333 15.78 15.78 0.00 1.82
2176 2705 6.443527 ACCAAAAGTGATAAATAGGCCCAATT 59.556 34.615 0.00 0.00 0.00 2.32
2177 2706 5.963865 ACCAAAAGTGATAAATAGGCCCAAT 59.036 36.000 0.00 0.00 0.00 3.16
2178 2707 5.337788 ACCAAAAGTGATAAATAGGCCCAA 58.662 37.500 0.00 0.00 0.00 4.12
2179 2708 4.941713 ACCAAAAGTGATAAATAGGCCCA 58.058 39.130 0.00 0.00 0.00 5.36
2180 2709 5.301045 GGTACCAAAAGTGATAAATAGGCCC 59.699 44.000 7.15 0.00 0.00 5.80
2181 2710 6.127101 AGGTACCAAAAGTGATAAATAGGCC 58.873 40.000 15.94 0.00 0.00 5.19
2182 2711 8.618677 GTTAGGTACCAAAAGTGATAAATAGGC 58.381 37.037 15.94 0.00 0.00 3.93
2183 2712 9.117183 GGTTAGGTACCAAAAGTGATAAATAGG 57.883 37.037 15.94 0.00 46.92 2.57
2200 2729 5.927281 TCCTAGTTCATGTGGTTAGGTAC 57.073 43.478 11.98 0.00 34.02 3.34
2201 2730 8.612486 TTATTCCTAGTTCATGTGGTTAGGTA 57.388 34.615 11.98 6.32 34.02 3.08
2202 2731 7.504926 TTATTCCTAGTTCATGTGGTTAGGT 57.495 36.000 11.98 2.06 34.02 3.08
2203 2732 7.445402 CCATTATTCCTAGTTCATGTGGTTAGG 59.555 40.741 0.00 1.23 33.69 2.69
2204 2733 7.041098 GCCATTATTCCTAGTTCATGTGGTTAG 60.041 40.741 0.00 0.00 0.00 2.34
2205 2734 6.770785 GCCATTATTCCTAGTTCATGTGGTTA 59.229 38.462 0.00 0.00 0.00 2.85
2206 2735 5.594317 GCCATTATTCCTAGTTCATGTGGTT 59.406 40.000 0.00 0.00 0.00 3.67
2207 2736 5.103940 AGCCATTATTCCTAGTTCATGTGGT 60.104 40.000 0.00 0.00 0.00 4.16
2208 2737 5.380043 AGCCATTATTCCTAGTTCATGTGG 58.620 41.667 0.00 0.00 0.00 4.17
2209 2738 8.450578 TTTAGCCATTATTCCTAGTTCATGTG 57.549 34.615 0.00 0.00 0.00 3.21
2219 2748 9.660544 AACCTTCAATATTTAGCCATTATTCCT 57.339 29.630 0.00 0.00 0.00 3.36
2220 2749 9.914131 GAACCTTCAATATTTAGCCATTATTCC 57.086 33.333 0.00 0.00 0.00 3.01
2225 2754 8.633561 GCTTAGAACCTTCAATATTTAGCCATT 58.366 33.333 0.00 0.00 0.00 3.16
2226 2755 7.231519 GGCTTAGAACCTTCAATATTTAGCCAT 59.768 37.037 0.00 0.00 35.51 4.40
2227 2756 6.546034 GGCTTAGAACCTTCAATATTTAGCCA 59.454 38.462 0.00 0.00 35.51 4.75
2228 2757 6.546034 TGGCTTAGAACCTTCAATATTTAGCC 59.454 38.462 0.00 0.00 35.93 3.93
2229 2758 7.568199 TGGCTTAGAACCTTCAATATTTAGC 57.432 36.000 0.00 0.00 0.00 3.09
2230 2759 9.125026 ACATGGCTTAGAACCTTCAATATTTAG 57.875 33.333 0.00 0.00 0.00 1.85
2232 2761 7.961326 ACATGGCTTAGAACCTTCAATATTT 57.039 32.000 0.00 0.00 0.00 1.40
2233 2762 9.289782 GATACATGGCTTAGAACCTTCAATATT 57.710 33.333 0.00 0.00 0.00 1.28
2234 2763 8.439971 TGATACATGGCTTAGAACCTTCAATAT 58.560 33.333 0.00 0.00 0.00 1.28
2235 2764 7.801104 TGATACATGGCTTAGAACCTTCAATA 58.199 34.615 0.00 0.00 0.00 1.90
2236 2765 6.662755 TGATACATGGCTTAGAACCTTCAAT 58.337 36.000 0.00 0.00 0.00 2.57
2237 2766 6.061022 TGATACATGGCTTAGAACCTTCAA 57.939 37.500 0.00 0.00 0.00 2.69
2238 2767 5.425217 TCTGATACATGGCTTAGAACCTTCA 59.575 40.000 0.00 0.00 0.00 3.02
2239 2768 5.918608 TCTGATACATGGCTTAGAACCTTC 58.081 41.667 0.00 0.00 0.00 3.46
2240 2769 5.686124 GCTCTGATACATGGCTTAGAACCTT 60.686 44.000 0.00 0.00 0.00 3.50
2241 2770 4.202305 GCTCTGATACATGGCTTAGAACCT 60.202 45.833 0.00 0.00 0.00 3.50
2242 2771 4.061596 GCTCTGATACATGGCTTAGAACC 58.938 47.826 0.00 0.00 0.00 3.62
2243 2772 4.061596 GGCTCTGATACATGGCTTAGAAC 58.938 47.826 0.00 0.00 0.00 3.01
2244 2773 3.243873 CGGCTCTGATACATGGCTTAGAA 60.244 47.826 0.00 0.00 0.00 2.10
2245 2774 2.297315 CGGCTCTGATACATGGCTTAGA 59.703 50.000 0.00 0.00 0.00 2.10
2246 2775 2.611473 CCGGCTCTGATACATGGCTTAG 60.611 54.545 0.00 0.00 0.00 2.18
2247 2776 1.344438 CCGGCTCTGATACATGGCTTA 59.656 52.381 0.00 0.00 0.00 3.09
2248 2777 0.107456 CCGGCTCTGATACATGGCTT 59.893 55.000 0.00 0.00 0.00 4.35
2249 2778 1.050988 ACCGGCTCTGATACATGGCT 61.051 55.000 0.00 0.00 0.00 4.75
2250 2779 0.179045 AACCGGCTCTGATACATGGC 60.179 55.000 0.00 0.00 0.00 4.40
2251 2780 3.685139 ATAACCGGCTCTGATACATGG 57.315 47.619 0.00 0.00 0.00 3.66
2252 2781 5.056480 TCAAATAACCGGCTCTGATACATG 58.944 41.667 0.00 0.00 0.00 3.21
2253 2782 5.163301 ACTCAAATAACCGGCTCTGATACAT 60.163 40.000 0.00 0.00 0.00 2.29
2254 2783 4.161565 ACTCAAATAACCGGCTCTGATACA 59.838 41.667 0.00 0.00 0.00 2.29
2255 2784 4.694339 ACTCAAATAACCGGCTCTGATAC 58.306 43.478 0.00 0.00 0.00 2.24
2256 2785 6.569801 CGATACTCAAATAACCGGCTCTGATA 60.570 42.308 0.00 0.00 0.00 2.15
2257 2786 3.914426 ACTCAAATAACCGGCTCTGAT 57.086 42.857 0.00 0.00 0.00 2.90
2258 2787 4.499188 CGATACTCAAATAACCGGCTCTGA 60.499 45.833 0.00 0.00 0.00 3.27
2259 2788 3.736252 CGATACTCAAATAACCGGCTCTG 59.264 47.826 0.00 0.00 0.00 3.35
2260 2789 3.635373 TCGATACTCAAATAACCGGCTCT 59.365 43.478 0.00 0.00 0.00 4.09
2261 2790 3.973657 TCGATACTCAAATAACCGGCTC 58.026 45.455 0.00 0.00 0.00 4.70
2262 2791 4.202223 ACATCGATACTCAAATAACCGGCT 60.202 41.667 0.00 0.00 0.00 5.52
2263 2792 4.056050 ACATCGATACTCAAATAACCGGC 58.944 43.478 0.00 0.00 0.00 6.13
2264 2793 5.522460 ACAACATCGATACTCAAATAACCGG 59.478 40.000 0.00 0.00 0.00 5.28
2265 2794 6.583912 ACAACATCGATACTCAAATAACCG 57.416 37.500 0.00 0.00 0.00 4.44
2266 2795 7.065324 TCCAACAACATCGATACTCAAATAACC 59.935 37.037 0.00 0.00 0.00 2.85
2267 2796 7.970384 TCCAACAACATCGATACTCAAATAAC 58.030 34.615 0.00 0.00 0.00 1.89
2268 2797 7.822334 ACTCCAACAACATCGATACTCAAATAA 59.178 33.333 0.00 0.00 0.00 1.40
2269 2798 7.327975 ACTCCAACAACATCGATACTCAAATA 58.672 34.615 0.00 0.00 0.00 1.40
2270 2799 6.173339 ACTCCAACAACATCGATACTCAAAT 58.827 36.000 0.00 0.00 0.00 2.32
2271 2800 5.547465 ACTCCAACAACATCGATACTCAAA 58.453 37.500 0.00 0.00 0.00 2.69
2272 2801 5.047306 AGACTCCAACAACATCGATACTCAA 60.047 40.000 0.00 0.00 0.00 3.02
2273 2802 4.462834 AGACTCCAACAACATCGATACTCA 59.537 41.667 0.00 0.00 0.00 3.41
2274 2803 5.000012 AGACTCCAACAACATCGATACTC 58.000 43.478 0.00 0.00 0.00 2.59
2275 2804 5.450688 GCTAGACTCCAACAACATCGATACT 60.451 44.000 0.00 0.00 0.00 2.12
2276 2805 4.740695 GCTAGACTCCAACAACATCGATAC 59.259 45.833 0.00 0.00 0.00 2.24
2277 2806 4.645136 AGCTAGACTCCAACAACATCGATA 59.355 41.667 0.00 0.00 0.00 2.92
2278 2807 3.449018 AGCTAGACTCCAACAACATCGAT 59.551 43.478 0.00 0.00 0.00 3.59
2279 2808 2.826128 AGCTAGACTCCAACAACATCGA 59.174 45.455 0.00 0.00 0.00 3.59
2280 2809 3.238108 AGCTAGACTCCAACAACATCG 57.762 47.619 0.00 0.00 0.00 3.84
2281 2810 3.935828 GGAAGCTAGACTCCAACAACATC 59.064 47.826 0.00 0.00 0.00 3.06
2282 2811 3.617531 CGGAAGCTAGACTCCAACAACAT 60.618 47.826 10.27 0.00 0.00 2.71
2283 2812 2.288825 CGGAAGCTAGACTCCAACAACA 60.289 50.000 10.27 0.00 0.00 3.33
2284 2813 2.029290 TCGGAAGCTAGACTCCAACAAC 60.029 50.000 10.27 0.00 0.00 3.32
2285 2814 2.029290 GTCGGAAGCTAGACTCCAACAA 60.029 50.000 10.27 0.00 34.74 2.83
2286 2815 1.544691 GTCGGAAGCTAGACTCCAACA 59.455 52.381 10.27 0.00 34.74 3.33
2287 2816 1.135053 GGTCGGAAGCTAGACTCCAAC 60.135 57.143 14.04 1.50 37.52 3.77
2288 2817 1.183549 GGTCGGAAGCTAGACTCCAA 58.816 55.000 14.04 0.00 37.52 3.53
2289 2818 0.039180 TGGTCGGAAGCTAGACTCCA 59.961 55.000 14.04 6.38 37.52 3.86
2290 2819 1.183549 TTGGTCGGAAGCTAGACTCC 58.816 55.000 14.04 4.75 37.52 3.85
2291 2820 2.223852 GGATTGGTCGGAAGCTAGACTC 60.224 54.545 14.04 6.52 37.52 3.36
2292 2821 1.757699 GGATTGGTCGGAAGCTAGACT 59.242 52.381 14.04 0.00 37.52 3.24
2293 2822 1.536284 CGGATTGGTCGGAAGCTAGAC 60.536 57.143 0.00 8.01 36.70 2.59
2294 2823 0.744874 CGGATTGGTCGGAAGCTAGA 59.255 55.000 0.00 0.00 0.00 2.43
2295 2824 0.876342 GCGGATTGGTCGGAAGCTAG 60.876 60.000 0.00 0.00 0.00 3.42
2296 2825 1.143183 GCGGATTGGTCGGAAGCTA 59.857 57.895 0.00 0.00 0.00 3.32
2297 2826 2.125106 GCGGATTGGTCGGAAGCT 60.125 61.111 0.00 0.00 0.00 3.74
2298 2827 1.706287 GAAGCGGATTGGTCGGAAGC 61.706 60.000 0.00 0.00 0.00 3.86
2299 2828 0.391130 TGAAGCGGATTGGTCGGAAG 60.391 55.000 0.00 0.00 0.00 3.46
2300 2829 0.672401 GTGAAGCGGATTGGTCGGAA 60.672 55.000 0.00 0.00 0.00 4.30
2301 2830 1.079405 GTGAAGCGGATTGGTCGGA 60.079 57.895 0.00 0.00 0.00 4.55
2302 2831 0.673644 AAGTGAAGCGGATTGGTCGG 60.674 55.000 0.00 0.00 0.00 4.79
2303 2832 0.721718 GAAGTGAAGCGGATTGGTCG 59.278 55.000 0.00 0.00 0.00 4.79
2304 2833 0.721718 CGAAGTGAAGCGGATTGGTC 59.278 55.000 0.00 0.00 0.00 4.02
2305 2834 2.840974 CGAAGTGAAGCGGATTGGT 58.159 52.632 0.00 0.00 0.00 3.67
2312 2841 0.108615 ATGTCCTCCGAAGTGAAGCG 60.109 55.000 0.00 0.00 0.00 4.68
2313 2842 2.930682 GTTATGTCCTCCGAAGTGAAGC 59.069 50.000 0.00 0.00 0.00 3.86
2314 2843 4.177026 CTGTTATGTCCTCCGAAGTGAAG 58.823 47.826 0.00 0.00 0.00 3.02
2315 2844 3.616560 GCTGTTATGTCCTCCGAAGTGAA 60.617 47.826 0.00 0.00 0.00 3.18
2316 2845 2.094182 GCTGTTATGTCCTCCGAAGTGA 60.094 50.000 0.00 0.00 0.00 3.41
2317 2846 2.093973 AGCTGTTATGTCCTCCGAAGTG 60.094 50.000 0.00 0.00 0.00 3.16
2318 2847 2.180276 AGCTGTTATGTCCTCCGAAGT 58.820 47.619 0.00 0.00 0.00 3.01
2319 2848 2.969628 AGCTGTTATGTCCTCCGAAG 57.030 50.000 0.00 0.00 0.00 3.79
2320 2849 4.464951 TCTTAAGCTGTTATGTCCTCCGAA 59.535 41.667 0.00 0.00 0.00 4.30
2321 2850 4.021229 TCTTAAGCTGTTATGTCCTCCGA 58.979 43.478 0.00 0.00 0.00 4.55
2322 2851 4.386867 TCTTAAGCTGTTATGTCCTCCG 57.613 45.455 0.00 0.00 0.00 4.63
2323 2852 5.978814 TCTTCTTAAGCTGTTATGTCCTCC 58.021 41.667 0.00 0.00 0.00 4.30
2324 2853 7.907214 TTTCTTCTTAAGCTGTTATGTCCTC 57.093 36.000 0.00 0.00 0.00 3.71
2325 2854 7.278868 CGATTTCTTCTTAAGCTGTTATGTCCT 59.721 37.037 0.00 0.00 0.00 3.85
2326 2855 7.277981 TCGATTTCTTCTTAAGCTGTTATGTCC 59.722 37.037 0.00 0.00 0.00 4.02
2327 2856 8.186178 TCGATTTCTTCTTAAGCTGTTATGTC 57.814 34.615 0.00 0.00 0.00 3.06
2328 2857 8.035394 TCTCGATTTCTTCTTAAGCTGTTATGT 58.965 33.333 0.00 0.00 0.00 2.29
2329 2858 8.412608 TCTCGATTTCTTCTTAAGCTGTTATG 57.587 34.615 0.00 0.00 0.00 1.90
2330 2859 9.255304 GATCTCGATTTCTTCTTAAGCTGTTAT 57.745 33.333 0.00 0.00 0.00 1.89
2331 2860 8.251026 TGATCTCGATTTCTTCTTAAGCTGTTA 58.749 33.333 0.00 0.00 0.00 2.41
2332 2861 7.099764 TGATCTCGATTTCTTCTTAAGCTGTT 58.900 34.615 0.00 0.00 0.00 3.16
2333 2862 6.634805 TGATCTCGATTTCTTCTTAAGCTGT 58.365 36.000 0.00 0.00 0.00 4.40
2334 2863 6.200665 CCTGATCTCGATTTCTTCTTAAGCTG 59.799 42.308 0.00 0.00 0.00 4.24
2335 2864 6.279882 CCTGATCTCGATTTCTTCTTAAGCT 58.720 40.000 0.00 0.00 0.00 3.74
2336 2865 5.050431 GCCTGATCTCGATTTCTTCTTAAGC 60.050 44.000 0.00 0.00 0.00 3.09
2337 2866 5.465056 GGCCTGATCTCGATTTCTTCTTAAG 59.535 44.000 0.00 0.00 0.00 1.85
2338 2867 5.129485 AGGCCTGATCTCGATTTCTTCTTAA 59.871 40.000 3.11 0.00 0.00 1.85
2339 2868 4.651503 AGGCCTGATCTCGATTTCTTCTTA 59.348 41.667 3.11 0.00 0.00 2.10
2340 2869 3.454082 AGGCCTGATCTCGATTTCTTCTT 59.546 43.478 3.11 0.00 0.00 2.52
2341 2870 3.037549 AGGCCTGATCTCGATTTCTTCT 58.962 45.455 3.11 0.00 0.00 2.85
2342 2871 3.467374 AGGCCTGATCTCGATTTCTTC 57.533 47.619 3.11 0.00 0.00 2.87
2343 2872 4.262808 CCATAGGCCTGATCTCGATTTCTT 60.263 45.833 17.99 0.00 0.00 2.52
2344 2873 3.260380 CCATAGGCCTGATCTCGATTTCT 59.740 47.826 17.99 0.00 0.00 2.52
2345 2874 3.259374 TCCATAGGCCTGATCTCGATTTC 59.741 47.826 17.99 0.00 0.00 2.17
2346 2875 3.242867 TCCATAGGCCTGATCTCGATTT 58.757 45.455 17.99 0.00 0.00 2.17
2347 2876 2.894731 TCCATAGGCCTGATCTCGATT 58.105 47.619 17.99 0.00 0.00 3.34
2348 2877 2.612285 TCCATAGGCCTGATCTCGAT 57.388 50.000 17.99 0.00 0.00 3.59
2349 2878 2.381752 TTCCATAGGCCTGATCTCGA 57.618 50.000 17.99 0.00 0.00 4.04
2350 2879 2.869636 GCTTTCCATAGGCCTGATCTCG 60.870 54.545 17.99 0.00 0.00 4.04
2351 2880 2.777094 GCTTTCCATAGGCCTGATCTC 58.223 52.381 17.99 0.00 0.00 2.75
2352 2881 1.071385 CGCTTTCCATAGGCCTGATCT 59.929 52.381 17.99 0.00 0.00 2.75
2353 2882 1.517242 CGCTTTCCATAGGCCTGATC 58.483 55.000 17.99 0.00 0.00 2.92
2354 2883 0.536006 GCGCTTTCCATAGGCCTGAT 60.536 55.000 17.99 1.82 0.00 2.90
2355 2884 1.153168 GCGCTTTCCATAGGCCTGA 60.153 57.895 17.99 0.00 0.00 3.86
2356 2885 1.451927 TGCGCTTTCCATAGGCCTG 60.452 57.895 17.99 0.00 0.00 4.85
2357 2886 1.452108 GTGCGCTTTCCATAGGCCT 60.452 57.895 11.78 11.78 0.00 5.19
2358 2887 1.748879 TGTGCGCTTTCCATAGGCC 60.749 57.895 9.73 0.00 0.00 5.19
2359 2888 1.305219 TGTGTGCGCTTTCCATAGGC 61.305 55.000 9.73 0.00 0.00 3.93
2360 2889 0.447801 GTGTGTGCGCTTTCCATAGG 59.552 55.000 9.73 0.00 0.00 2.57
2361 2890 1.135972 GTGTGTGTGCGCTTTCCATAG 60.136 52.381 9.73 0.00 0.00 2.23
2362 2891 0.871722 GTGTGTGTGCGCTTTCCATA 59.128 50.000 9.73 0.00 0.00 2.74
2363 2892 1.654220 GTGTGTGTGCGCTTTCCAT 59.346 52.632 9.73 0.00 0.00 3.41
2364 2893 2.818487 CGTGTGTGTGCGCTTTCCA 61.818 57.895 9.73 0.00 0.00 3.53
2365 2894 2.052237 CGTGTGTGTGCGCTTTCC 60.052 61.111 9.73 0.00 0.00 3.13
2693 3222 2.243221 AGGTCATTTCCTCAATCTGGGG 59.757 50.000 0.00 0.00 40.17 4.96
2694 3223 3.659183 AGGTCATTTCCTCAATCTGGG 57.341 47.619 0.00 0.00 31.32 4.45
2703 3232 3.522750 AGCAAGATGAGAGGTCATTTCCT 59.477 43.478 0.00 0.00 43.92 3.36
2704 3233 3.883669 AGCAAGATGAGAGGTCATTTCC 58.116 45.455 0.00 0.00 43.92 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.