Multiple sequence alignment - TraesCS2B01G592600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2B01G592600 | chr2B | 100.000 | 2935 | 0 | 0 | 1 | 2935 | 777522939 | 777520005 | 0.000000e+00 | 5421.0 |
1 | TraesCS2B01G592600 | chr2B | 82.326 | 1092 | 85 | 47 | 517 | 1553 | 777549974 | 777548936 | 0.000000e+00 | 848.0 |
2 | TraesCS2B01G592600 | chr2B | 82.514 | 692 | 56 | 38 | 888 | 1553 | 777659053 | 777658401 | 5.530000e-152 | 547.0 |
3 | TraesCS2B01G592600 | chr2B | 82.438 | 689 | 55 | 35 | 772 | 1437 | 777635407 | 777634762 | 2.570000e-150 | 542.0 |
4 | TraesCS2B01G592600 | chr2B | 76.451 | 913 | 107 | 62 | 702 | 1553 | 777619230 | 777618365 | 2.120000e-106 | 396.0 |
5 | TraesCS2B01G592600 | chr2B | 74.242 | 528 | 49 | 45 | 361 | 875 | 777607871 | 777607418 | 1.100000e-29 | 141.0 |
6 | TraesCS2B01G592600 | chr2B | 88.889 | 108 | 7 | 2 | 32 | 139 | 777608285 | 777608183 | 8.540000e-26 | 128.0 |
7 | TraesCS2B01G592600 | chr2D | 82.611 | 1639 | 112 | 73 | 3 | 1553 | 634483409 | 634481856 | 0.000000e+00 | 1288.0 |
8 | TraesCS2B01G592600 | chr2D | 82.148 | 633 | 65 | 29 | 942 | 1552 | 634658871 | 634658265 | 1.570000e-137 | 499.0 |
9 | TraesCS2B01G592600 | chr2D | 78.468 | 901 | 82 | 62 | 32 | 881 | 634557618 | 634556779 | 1.220000e-133 | 486.0 |
10 | TraesCS2B01G592600 | chr2D | 91.168 | 351 | 23 | 6 | 1207 | 1553 | 634556369 | 634556023 | 1.230000e-128 | 470.0 |
11 | TraesCS2B01G592600 | chr2D | 82.281 | 570 | 52 | 26 | 1015 | 1553 | 634575487 | 634574936 | 5.770000e-122 | 448.0 |
12 | TraesCS2B01G592600 | chr2D | 80.184 | 434 | 32 | 19 | 1556 | 1954 | 634481784 | 634481370 | 2.880000e-70 | 276.0 |
13 | TraesCS2B01G592600 | chr2D | 83.806 | 247 | 28 | 9 | 888 | 1133 | 634556654 | 634556419 | 1.060000e-54 | 224.0 |
14 | TraesCS2B01G592600 | chr2D | 77.844 | 334 | 38 | 16 | 702 | 1018 | 634575828 | 634575514 | 1.080000e-39 | 174.0 |
15 | TraesCS2B01G592600 | chr2D | 91.935 | 62 | 5 | 0 | 32 | 93 | 634659661 | 634659600 | 1.450000e-13 | 87.9 |
16 | TraesCS2B01G592600 | chr2D | 83.696 | 92 | 4 | 6 | 1629 | 1709 | 634574794 | 634574703 | 3.140000e-10 | 76.8 |
17 | TraesCS2B01G592600 | chr2A | 82.271 | 1647 | 121 | 78 | 3 | 1553 | 778913752 | 778915323 | 0.000000e+00 | 1266.0 |
18 | TraesCS2B01G592600 | chr2A | 88.383 | 835 | 53 | 18 | 2129 | 2931 | 778915919 | 778916741 | 0.000000e+00 | 965.0 |
19 | TraesCS2B01G592600 | chr2A | 79.019 | 1611 | 159 | 98 | 29 | 1553 | 778826339 | 778827856 | 0.000000e+00 | 937.0 |
20 | TraesCS2B01G592600 | chr2A | 86.049 | 810 | 61 | 22 | 784 | 1553 | 778876136 | 778876933 | 0.000000e+00 | 822.0 |
21 | TraesCS2B01G592600 | chr2A | 82.020 | 812 | 88 | 38 | 764 | 1553 | 778759802 | 778760577 | 3.190000e-179 | 638.0 |
22 | TraesCS2B01G592600 | chr2A | 83.752 | 517 | 42 | 16 | 1548 | 2031 | 778915385 | 778915892 | 4.460000e-123 | 451.0 |
23 | TraesCS2B01G592600 | chr2A | 80.263 | 228 | 24 | 8 | 211 | 429 | 778869836 | 778870051 | 5.070000e-33 | 152.0 |
24 | TraesCS2B01G592600 | chr2A | 89.320 | 103 | 4 | 7 | 41 | 139 | 778813618 | 778813717 | 3.970000e-24 | 122.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2B01G592600 | chr2B | 777520005 | 777522939 | 2934 | True | 5421.000000 | 5421 | 100.000000 | 1 | 2935 | 1 | chr2B.!!$R1 | 2934 |
1 | TraesCS2B01G592600 | chr2B | 777548936 | 777549974 | 1038 | True | 848.000000 | 848 | 82.326000 | 517 | 1553 | 1 | chr2B.!!$R2 | 1036 |
2 | TraesCS2B01G592600 | chr2B | 777658401 | 777659053 | 652 | True | 547.000000 | 547 | 82.514000 | 888 | 1553 | 1 | chr2B.!!$R5 | 665 |
3 | TraesCS2B01G592600 | chr2B | 777634762 | 777635407 | 645 | True | 542.000000 | 542 | 82.438000 | 772 | 1437 | 1 | chr2B.!!$R4 | 665 |
4 | TraesCS2B01G592600 | chr2B | 777618365 | 777619230 | 865 | True | 396.000000 | 396 | 76.451000 | 702 | 1553 | 1 | chr2B.!!$R3 | 851 |
5 | TraesCS2B01G592600 | chr2D | 634481370 | 634483409 | 2039 | True | 782.000000 | 1288 | 81.397500 | 3 | 1954 | 2 | chr2D.!!$R1 | 1951 |
6 | TraesCS2B01G592600 | chr2D | 634556023 | 634557618 | 1595 | True | 393.333333 | 486 | 84.480667 | 32 | 1553 | 3 | chr2D.!!$R2 | 1521 |
7 | TraesCS2B01G592600 | chr2D | 634658265 | 634659661 | 1396 | True | 293.450000 | 499 | 87.041500 | 32 | 1552 | 2 | chr2D.!!$R4 | 1520 |
8 | TraesCS2B01G592600 | chr2D | 634574703 | 634575828 | 1125 | True | 232.933333 | 448 | 81.273667 | 702 | 1709 | 3 | chr2D.!!$R3 | 1007 |
9 | TraesCS2B01G592600 | chr2A | 778826339 | 778827856 | 1517 | False | 937.000000 | 937 | 79.019000 | 29 | 1553 | 1 | chr2A.!!$F3 | 1524 |
10 | TraesCS2B01G592600 | chr2A | 778913752 | 778916741 | 2989 | False | 894.000000 | 1266 | 84.802000 | 3 | 2931 | 3 | chr2A.!!$F6 | 2928 |
11 | TraesCS2B01G592600 | chr2A | 778876136 | 778876933 | 797 | False | 822.000000 | 822 | 86.049000 | 784 | 1553 | 1 | chr2A.!!$F5 | 769 |
12 | TraesCS2B01G592600 | chr2A | 778759802 | 778760577 | 775 | False | 638.000000 | 638 | 82.020000 | 764 | 1553 | 1 | chr2A.!!$F1 | 789 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
567 | 719 | 0.037326 | ACCGTGCCACACAGACATAG | 60.037 | 55.0 | 0.0 | 0.0 | 33.4 | 2.23 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2076 | 2741 | 0.108424 | GTCGATGCAAGCCTCTCTGT | 60.108 | 55.0 | 0.0 | 0.0 | 0.0 | 3.41 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
17 | 18 | 2.684104 | TCGTCCTCTCTCCCCAGG | 59.316 | 66.667 | 0.00 | 0.00 | 0.00 | 4.45 |
18 | 19 | 1.929088 | TCGTCCTCTCTCCCCAGGA | 60.929 | 63.158 | 0.00 | 0.00 | 36.38 | 3.86 |
180 | 198 | 4.612412 | GCCCCGACGACCAACACA | 62.612 | 66.667 | 0.00 | 0.00 | 0.00 | 3.72 |
181 | 199 | 2.663852 | CCCCGACGACCAACACAC | 60.664 | 66.667 | 0.00 | 0.00 | 0.00 | 3.82 |
183 | 201 | 1.954146 | CCCGACGACCAACACACTG | 60.954 | 63.158 | 0.00 | 0.00 | 0.00 | 3.66 |
185 | 203 | 1.066752 | CGACGACCAACACACTGGA | 59.933 | 57.895 | 0.00 | 0.00 | 38.96 | 3.86 |
186 | 204 | 1.213094 | CGACGACCAACACACTGGAC | 61.213 | 60.000 | 0.00 | 0.00 | 38.96 | 4.02 |
187 | 205 | 0.104304 | GACGACCAACACACTGGACT | 59.896 | 55.000 | 0.00 | 0.00 | 38.96 | 3.85 |
188 | 206 | 0.539986 | ACGACCAACACACTGGACTT | 59.460 | 50.000 | 0.00 | 0.00 | 38.96 | 3.01 |
189 | 207 | 0.937304 | CGACCAACACACTGGACTTG | 59.063 | 55.000 | 0.00 | 0.00 | 38.96 | 3.16 |
190 | 208 | 1.742411 | CGACCAACACACTGGACTTGT | 60.742 | 52.381 | 0.00 | 0.00 | 38.96 | 3.16 |
192 | 210 | 1.308998 | CCAACACACTGGACTTGTCC | 58.691 | 55.000 | 12.54 | 12.54 | 38.96 | 4.02 |
196 | 214 | 0.600255 | CACACTGGACTTGTCCGACC | 60.600 | 60.000 | 14.24 | 0.00 | 0.00 | 4.79 |
197 | 215 | 0.759436 | ACACTGGACTTGTCCGACCT | 60.759 | 55.000 | 14.24 | 0.00 | 0.00 | 3.85 |
198 | 216 | 0.393077 | CACTGGACTTGTCCGACCTT | 59.607 | 55.000 | 14.24 | 0.00 | 0.00 | 3.50 |
200 | 218 | 0.388649 | CTGGACTTGTCCGACCTTCG | 60.389 | 60.000 | 14.24 | 0.00 | 40.07 | 3.79 |
202 | 220 | 1.737008 | GACTTGTCCGACCTTCGCC | 60.737 | 63.158 | 0.00 | 0.00 | 38.82 | 5.54 |
326 | 433 | 4.943591 | GTGCCGCGCGTGCATATG | 62.944 | 66.667 | 35.83 | 19.63 | 41.46 | 1.78 |
346 | 458 | 4.621269 | AGTCTGGACTTGACCGGT | 57.379 | 55.556 | 6.92 | 6.92 | 38.83 | 5.28 |
354 | 466 | 2.813908 | CTTGACCGGTACCAGCGC | 60.814 | 66.667 | 7.34 | 0.00 | 37.85 | 5.92 |
355 | 467 | 4.382320 | TTGACCGGTACCAGCGCC | 62.382 | 66.667 | 7.34 | 0.00 | 37.85 | 6.53 |
357 | 469 | 4.382320 | GACCGGTACCAGCGCCAA | 62.382 | 66.667 | 7.34 | 0.00 | 37.85 | 4.52 |
358 | 470 | 4.692475 | ACCGGTACCAGCGCCAAC | 62.692 | 66.667 | 4.49 | 0.00 | 37.85 | 3.77 |
359 | 471 | 4.388499 | CCGGTACCAGCGCCAACT | 62.388 | 66.667 | 13.54 | 0.00 | 37.85 | 3.16 |
363 | 475 | 0.676782 | GGTACCAGCGCCAACTCAAT | 60.677 | 55.000 | 7.15 | 0.00 | 0.00 | 2.57 |
387 | 499 | 5.571791 | TGCAAGATTCCATCCATCTATCA | 57.428 | 39.130 | 0.00 | 0.00 | 30.35 | 2.15 |
488 | 631 | 0.239347 | ACTGAACGAACGGTCCTACG | 59.761 | 55.000 | 9.71 | 0.00 | 40.31 | 3.51 |
510 | 653 | 3.305744 | GCTCCTACTCCTGCTGCTAATAC | 60.306 | 52.174 | 0.00 | 0.00 | 0.00 | 1.89 |
567 | 719 | 0.037326 | ACCGTGCCACACAGACATAG | 60.037 | 55.000 | 0.00 | 0.00 | 33.40 | 2.23 |
628 | 792 | 3.241530 | ACGGTGGAGGAAGCTGCA | 61.242 | 61.111 | 1.02 | 0.00 | 0.00 | 4.41 |
650 | 814 | 1.219124 | GGACGCAAGGAGAGCATCA | 59.781 | 57.895 | 0.00 | 0.00 | 46.39 | 3.07 |
678 | 842 | 4.805231 | CCGTACGTCCATGCCGCA | 62.805 | 66.667 | 15.21 | 0.00 | 0.00 | 5.69 |
726 | 897 | 3.261137 | GGCTTCTATGTATAGGACACCCC | 59.739 | 52.174 | 0.00 | 0.00 | 42.17 | 4.95 |
727 | 898 | 3.901844 | GCTTCTATGTATAGGACACCCCA | 59.098 | 47.826 | 0.00 | 0.00 | 42.17 | 4.96 |
856 | 1084 | 1.226046 | CACTGACCGCTACGTCTCG | 60.226 | 63.158 | 0.00 | 0.00 | 33.70 | 4.04 |
865 | 1093 | 1.090625 | GCTACGTCTCGCTCTCTCCA | 61.091 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
869 | 1097 | 1.791103 | CGTCTCGCTCTCTCCATCCC | 61.791 | 65.000 | 0.00 | 0.00 | 0.00 | 3.85 |
876 | 1123 | 1.999648 | CTCTCTCCATCCCTCTCCTG | 58.000 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1075 | 1512 | 1.645704 | CGCTGCTGAGCAAGAGCAAT | 61.646 | 55.000 | 9.07 | 0.00 | 45.65 | 3.56 |
1117 | 1570 | 1.815613 | GCTCACTGCTCACTCTGTCTA | 59.184 | 52.381 | 0.00 | 0.00 | 38.95 | 2.59 |
1237 | 1736 | 4.020617 | CCGAAGCTGGAGTGCCCA | 62.021 | 66.667 | 0.00 | 0.00 | 44.25 | 5.36 |
1471 | 1988 | 4.020617 | CCGGACCAGCAGGAGCAA | 62.021 | 66.667 | 0.35 | 0.00 | 45.49 | 3.91 |
1513 | 2039 | 0.613853 | TCTTCCCGTTCCTCACCGAT | 60.614 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
1514 | 2040 | 0.460284 | CTTCCCGTTCCTCACCGATG | 60.460 | 60.000 | 0.00 | 0.00 | 0.00 | 3.84 |
1515 | 2041 | 1.895020 | TTCCCGTTCCTCACCGATGG | 61.895 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1603 | 2213 | 4.083862 | GAGGACTTCGGCGGCCTT | 62.084 | 66.667 | 18.34 | 0.00 | 0.00 | 4.35 |
1668 | 2278 | 2.277949 | ATCGGCGTCGTCATGTCG | 60.278 | 61.111 | 10.18 | 5.98 | 38.03 | 4.35 |
1693 | 2322 | 2.202676 | CGCTCGAGGCTCCTGTTC | 60.203 | 66.667 | 15.58 | 0.00 | 39.13 | 3.18 |
1714 | 2347 | 2.483741 | ATCATCGCAGCCTCGATCGG | 62.484 | 60.000 | 16.41 | 5.93 | 46.22 | 4.18 |
1726 | 2359 | 0.100682 | TCGATCGGTCAGCTAGTTGC | 59.899 | 55.000 | 16.41 | 0.00 | 43.29 | 4.17 |
1780 | 2425 | 4.226113 | CTGAGCTAGGAATGTACGTACC | 57.774 | 50.000 | 22.43 | 7.54 | 0.00 | 3.34 |
1781 | 2426 | 3.623703 | TGAGCTAGGAATGTACGTACCA | 58.376 | 45.455 | 22.43 | 11.24 | 0.00 | 3.25 |
1782 | 2427 | 3.630769 | TGAGCTAGGAATGTACGTACCAG | 59.369 | 47.826 | 22.43 | 10.67 | 0.00 | 4.00 |
1783 | 2428 | 3.629087 | AGCTAGGAATGTACGTACCAGT | 58.371 | 45.455 | 22.43 | 10.13 | 0.00 | 4.00 |
1786 | 2431 | 4.497674 | GCTAGGAATGTACGTACCAGTCTG | 60.498 | 50.000 | 22.43 | 13.08 | 0.00 | 3.51 |
1789 | 2434 | 2.941453 | ATGTACGTACCAGTCTGCAG | 57.059 | 50.000 | 22.43 | 7.63 | 0.00 | 4.41 |
1790 | 2435 | 1.612676 | TGTACGTACCAGTCTGCAGT | 58.387 | 50.000 | 22.43 | 0.00 | 0.00 | 4.40 |
1800 | 2461 | 2.547211 | CCAGTCTGCAGTGTTTCTTCTG | 59.453 | 50.000 | 14.67 | 9.84 | 35.12 | 3.02 |
1829 | 2494 | 7.333423 | GCTTAGGTATAAATGATGTGGCGATTA | 59.667 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
1881 | 2546 | 1.879927 | TAGCAGCAGGGAGGAGGACT | 61.880 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1882 | 2547 | 2.297129 | GCAGCAGGGAGGAGGACTT | 61.297 | 63.158 | 0.00 | 0.00 | 0.00 | 3.01 |
1883 | 2548 | 0.978146 | GCAGCAGGGAGGAGGACTTA | 60.978 | 60.000 | 0.00 | 0.00 | 0.00 | 2.24 |
1884 | 2549 | 1.573108 | CAGCAGGGAGGAGGACTTAA | 58.427 | 55.000 | 0.00 | 0.00 | 0.00 | 1.85 |
1885 | 2550 | 1.484240 | CAGCAGGGAGGAGGACTTAAG | 59.516 | 57.143 | 0.00 | 0.00 | 0.00 | 1.85 |
1886 | 2551 | 1.079658 | AGCAGGGAGGAGGACTTAAGT | 59.920 | 52.381 | 8.13 | 8.13 | 0.00 | 2.24 |
1887 | 2552 | 2.315155 | AGCAGGGAGGAGGACTTAAGTA | 59.685 | 50.000 | 8.42 | 0.00 | 0.00 | 2.24 |
1888 | 2553 | 3.051727 | AGCAGGGAGGAGGACTTAAGTAT | 60.052 | 47.826 | 8.42 | 0.00 | 0.00 | 2.12 |
1895 | 2560 | 6.040729 | GGGAGGAGGACTTAAGTATGTAACTC | 59.959 | 46.154 | 8.42 | 11.08 | 37.50 | 3.01 |
1904 | 2569 | 2.715046 | AGTATGTAACTCGGTCCGTGA | 58.285 | 47.619 | 19.68 | 0.00 | 30.33 | 4.35 |
1919 | 2584 | 7.663827 | TCGGTCCGTGAAGTGATATAATATTT | 58.336 | 34.615 | 11.88 | 0.00 | 0.00 | 1.40 |
1965 | 2630 | 5.127031 | GGTTATATGGTGTGGTTGCTCAATT | 59.873 | 40.000 | 0.00 | 0.00 | 0.00 | 2.32 |
2012 | 2677 | 5.729974 | GTGGGGAACTACGAAATGTTATC | 57.270 | 43.478 | 0.00 | 0.00 | 29.82 | 1.75 |
2015 | 2680 | 6.036844 | GTGGGGAACTACGAAATGTTATCTTC | 59.963 | 42.308 | 0.00 | 0.00 | 29.82 | 2.87 |
2031 | 2696 | 9.896645 | ATGTTATCTTCATCATGAACTTACACT | 57.103 | 29.630 | 0.00 | 0.00 | 32.21 | 3.55 |
2035 | 2700 | 7.718334 | TCTTCATCATGAACTTACACTAGGA | 57.282 | 36.000 | 0.00 | 0.00 | 32.21 | 2.94 |
2037 | 2702 | 8.593679 | TCTTCATCATGAACTTACACTAGGAAA | 58.406 | 33.333 | 0.00 | 0.00 | 32.21 | 3.13 |
2038 | 2703 | 8.777865 | TTCATCATGAACTTACACTAGGAAAG | 57.222 | 34.615 | 0.00 | 0.00 | 30.26 | 2.62 |
2039 | 2704 | 8.134202 | TCATCATGAACTTACACTAGGAAAGA | 57.866 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
2041 | 2706 | 8.660373 | CATCATGAACTTACACTAGGAAAGAAC | 58.340 | 37.037 | 0.00 | 3.26 | 0.00 | 3.01 |
2042 | 2707 | 7.732025 | TCATGAACTTACACTAGGAAAGAACA | 58.268 | 34.615 | 0.00 | 7.29 | 0.00 | 3.18 |
2044 | 2709 | 8.836413 | CATGAACTTACACTAGGAAAGAACAAA | 58.164 | 33.333 | 7.69 | 0.00 | 0.00 | 2.83 |
2057 | 2722 | 7.602753 | AGGAAAGAACAAATAAATGTAGTGGC | 58.397 | 34.615 | 0.00 | 0.00 | 32.02 | 5.01 |
2058 | 2723 | 7.451566 | AGGAAAGAACAAATAAATGTAGTGGCT | 59.548 | 33.333 | 0.00 | 0.00 | 32.02 | 4.75 |
2059 | 2724 | 7.542130 | GGAAAGAACAAATAAATGTAGTGGCTG | 59.458 | 37.037 | 0.00 | 0.00 | 32.02 | 4.85 |
2060 | 2725 | 5.954335 | AGAACAAATAAATGTAGTGGCTGC | 58.046 | 37.500 | 0.00 | 0.00 | 32.02 | 5.25 |
2061 | 2726 | 5.711976 | AGAACAAATAAATGTAGTGGCTGCT | 59.288 | 36.000 | 0.00 | 0.00 | 32.02 | 4.24 |
2062 | 2727 | 6.884295 | AGAACAAATAAATGTAGTGGCTGCTA | 59.116 | 34.615 | 0.00 | 0.00 | 32.02 | 3.49 |
2063 | 2728 | 7.557719 | AGAACAAATAAATGTAGTGGCTGCTAT | 59.442 | 33.333 | 0.00 | 0.00 | 32.02 | 2.97 |
2064 | 2729 | 8.746052 | AACAAATAAATGTAGTGGCTGCTATA | 57.254 | 30.769 | 0.00 | 0.00 | 32.02 | 1.31 |
2065 | 2730 | 8.746052 | ACAAATAAATGTAGTGGCTGCTATAA | 57.254 | 30.769 | 0.00 | 0.00 | 0.00 | 0.98 |
2066 | 2731 | 8.621286 | ACAAATAAATGTAGTGGCTGCTATAAC | 58.379 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
2067 | 2732 | 8.840321 | CAAATAAATGTAGTGGCTGCTATAACT | 58.160 | 33.333 | 0.00 | 1.61 | 0.00 | 2.24 |
2069 | 2734 | 9.490379 | AATAAATGTAGTGGCTGCTATAACTAC | 57.510 | 33.333 | 19.13 | 19.13 | 43.38 | 2.73 |
2071 | 2736 | 5.258456 | TGTAGTGGCTGCTATAACTACAC | 57.742 | 43.478 | 22.10 | 11.51 | 46.10 | 2.90 |
2072 | 2737 | 4.707934 | TGTAGTGGCTGCTATAACTACACA | 59.292 | 41.667 | 22.10 | 11.92 | 46.10 | 3.72 |
2073 | 2738 | 4.819105 | AGTGGCTGCTATAACTACACAA | 57.181 | 40.909 | 0.00 | 0.00 | 0.00 | 3.33 |
2074 | 2739 | 5.359194 | AGTGGCTGCTATAACTACACAAT | 57.641 | 39.130 | 0.00 | 0.00 | 0.00 | 2.71 |
2075 | 2740 | 5.745227 | AGTGGCTGCTATAACTACACAATT | 58.255 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
2076 | 2741 | 6.884832 | AGTGGCTGCTATAACTACACAATTA | 58.115 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2077 | 2742 | 6.761714 | AGTGGCTGCTATAACTACACAATTAC | 59.238 | 38.462 | 0.00 | 0.00 | 0.00 | 1.89 |
2078 | 2743 | 6.537301 | GTGGCTGCTATAACTACACAATTACA | 59.463 | 38.462 | 0.00 | 0.00 | 0.00 | 2.41 |
2079 | 2744 | 6.761242 | TGGCTGCTATAACTACACAATTACAG | 59.239 | 38.462 | 0.00 | 0.00 | 0.00 | 2.74 |
2080 | 2745 | 6.984474 | GGCTGCTATAACTACACAATTACAGA | 59.016 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
2081 | 2746 | 7.169982 | GGCTGCTATAACTACACAATTACAGAG | 59.830 | 40.741 | 0.00 | 0.00 | 0.00 | 3.35 |
2082 | 2747 | 7.921214 | GCTGCTATAACTACACAATTACAGAGA | 59.079 | 37.037 | 0.00 | 0.00 | 0.00 | 3.10 |
2083 | 2748 | 9.457110 | CTGCTATAACTACACAATTACAGAGAG | 57.543 | 37.037 | 0.00 | 0.00 | 0.00 | 3.20 |
2084 | 2749 | 8.414003 | TGCTATAACTACACAATTACAGAGAGG | 58.586 | 37.037 | 0.00 | 0.00 | 0.00 | 3.69 |
2085 | 2750 | 7.382759 | GCTATAACTACACAATTACAGAGAGGC | 59.617 | 40.741 | 0.00 | 0.00 | 0.00 | 4.70 |
2086 | 2751 | 5.746990 | AACTACACAATTACAGAGAGGCT | 57.253 | 39.130 | 0.00 | 0.00 | 0.00 | 4.58 |
2087 | 2752 | 5.746990 | ACTACACAATTACAGAGAGGCTT | 57.253 | 39.130 | 0.00 | 0.00 | 0.00 | 4.35 |
2088 | 2753 | 5.482908 | ACTACACAATTACAGAGAGGCTTG | 58.517 | 41.667 | 0.00 | 0.00 | 0.00 | 4.01 |
2089 | 2754 | 3.077359 | ACACAATTACAGAGAGGCTTGC | 58.923 | 45.455 | 0.00 | 0.00 | 0.00 | 4.01 |
2090 | 2755 | 3.076621 | CACAATTACAGAGAGGCTTGCA | 58.923 | 45.455 | 0.00 | 0.00 | 0.00 | 4.08 |
2091 | 2756 | 3.693085 | CACAATTACAGAGAGGCTTGCAT | 59.307 | 43.478 | 0.00 | 0.00 | 0.00 | 3.96 |
2092 | 2757 | 3.944015 | ACAATTACAGAGAGGCTTGCATC | 59.056 | 43.478 | 0.00 | 0.00 | 0.00 | 3.91 |
2093 | 2758 | 2.299993 | TTACAGAGAGGCTTGCATCG | 57.700 | 50.000 | 1.60 | 0.00 | 0.00 | 3.84 |
2094 | 2759 | 1.474330 | TACAGAGAGGCTTGCATCGA | 58.526 | 50.000 | 1.60 | 0.00 | 0.00 | 3.59 |
2095 | 2760 | 0.108424 | ACAGAGAGGCTTGCATCGAC | 60.108 | 55.000 | 1.60 | 1.37 | 0.00 | 4.20 |
2096 | 2761 | 0.108472 | CAGAGAGGCTTGCATCGACA | 60.108 | 55.000 | 1.60 | 0.00 | 0.00 | 4.35 |
2097 | 2762 | 0.175302 | AGAGAGGCTTGCATCGACAG | 59.825 | 55.000 | 1.60 | 0.00 | 0.00 | 3.51 |
2098 | 2763 | 0.108424 | GAGAGGCTTGCATCGACAGT | 60.108 | 55.000 | 1.60 | 0.00 | 0.00 | 3.55 |
2099 | 2764 | 1.135139 | GAGAGGCTTGCATCGACAGTA | 59.865 | 52.381 | 1.60 | 0.00 | 0.00 | 2.74 |
2100 | 2765 | 1.135915 | AGAGGCTTGCATCGACAGTAG | 59.864 | 52.381 | 1.60 | 0.00 | 0.00 | 2.57 |
2101 | 2766 | 1.135139 | GAGGCTTGCATCGACAGTAGA | 59.865 | 52.381 | 0.00 | 0.00 | 0.00 | 2.59 |
2102 | 2767 | 1.550524 | AGGCTTGCATCGACAGTAGAA | 59.449 | 47.619 | 0.00 | 0.00 | 0.00 | 2.10 |
2103 | 2768 | 2.028112 | AGGCTTGCATCGACAGTAGAAA | 60.028 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
2104 | 2769 | 2.349886 | GGCTTGCATCGACAGTAGAAAG | 59.650 | 50.000 | 0.00 | 0.00 | 0.00 | 2.62 |
2105 | 2770 | 3.254060 | GCTTGCATCGACAGTAGAAAGA | 58.746 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
2106 | 2771 | 3.679980 | GCTTGCATCGACAGTAGAAAGAA | 59.320 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
2107 | 2772 | 4.434857 | GCTTGCATCGACAGTAGAAAGAAC | 60.435 | 45.833 | 0.00 | 0.00 | 0.00 | 3.01 |
2108 | 2773 | 3.242518 | TGCATCGACAGTAGAAAGAACG | 58.757 | 45.455 | 0.00 | 0.00 | 0.00 | 3.95 |
2109 | 2774 | 2.599082 | GCATCGACAGTAGAAAGAACGG | 59.401 | 50.000 | 0.00 | 0.00 | 0.00 | 4.44 |
2110 | 2775 | 3.834610 | CATCGACAGTAGAAAGAACGGT | 58.165 | 45.455 | 0.00 | 0.00 | 0.00 | 4.83 |
2111 | 2776 | 3.278367 | TCGACAGTAGAAAGAACGGTG | 57.722 | 47.619 | 0.00 | 0.00 | 0.00 | 4.94 |
2112 | 2777 | 2.620115 | TCGACAGTAGAAAGAACGGTGT | 59.380 | 45.455 | 0.00 | 0.00 | 0.00 | 4.16 |
2113 | 2778 | 2.724690 | CGACAGTAGAAAGAACGGTGTG | 59.275 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
2114 | 2779 | 3.057734 | GACAGTAGAAAGAACGGTGTGG | 58.942 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
2115 | 2780 | 2.433239 | ACAGTAGAAAGAACGGTGTGGT | 59.567 | 45.455 | 0.00 | 0.00 | 0.00 | 4.16 |
2116 | 2781 | 3.118519 | ACAGTAGAAAGAACGGTGTGGTT | 60.119 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
2117 | 2782 | 3.875134 | CAGTAGAAAGAACGGTGTGGTTT | 59.125 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
2118 | 2783 | 4.025145 | CAGTAGAAAGAACGGTGTGGTTTC | 60.025 | 45.833 | 0.00 | 0.00 | 0.00 | 2.78 |
2119 | 2784 | 1.937899 | AGAAAGAACGGTGTGGTTTCG | 59.062 | 47.619 | 0.00 | 0.00 | 33.29 | 3.46 |
2120 | 2785 | 1.003223 | GAAAGAACGGTGTGGTTTCGG | 60.003 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
2121 | 2786 | 0.816421 | AAGAACGGTGTGGTTTCGGG | 60.816 | 55.000 | 0.00 | 0.00 | 0.00 | 5.14 |
2122 | 2787 | 1.227615 | GAACGGTGTGGTTTCGGGA | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 5.14 |
2123 | 2788 | 1.226030 | GAACGGTGTGGTTTCGGGAG | 61.226 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2124 | 2789 | 1.974973 | AACGGTGTGGTTTCGGGAGT | 61.975 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2125 | 2790 | 1.959226 | CGGTGTGGTTTCGGGAGTG | 60.959 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
2126 | 2791 | 1.448497 | GGTGTGGTTTCGGGAGTGA | 59.552 | 57.895 | 0.00 | 0.00 | 0.00 | 3.41 |
2127 | 2792 | 0.602905 | GGTGTGGTTTCGGGAGTGAG | 60.603 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2151 | 2816 | 2.291741 | CTCAAGGCACCAAAACAGAGAC | 59.708 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2177 | 2842 | 7.020914 | ACTTTCAACAGAGTGATCTCAAAAC | 57.979 | 36.000 | 0.00 | 0.00 | 42.66 | 2.43 |
2183 | 2848 | 6.166984 | ACAGAGTGATCTCAAAACAGAGAA | 57.833 | 37.500 | 0.00 | 0.00 | 46.81 | 2.87 |
2184 | 2849 | 6.586344 | ACAGAGTGATCTCAAAACAGAGAAA | 58.414 | 36.000 | 0.00 | 0.00 | 46.81 | 2.52 |
2187 | 2852 | 7.226325 | CAGAGTGATCTCAAAACAGAGAAACTT | 59.774 | 37.037 | 11.51 | 3.55 | 46.81 | 2.66 |
2214 | 2879 | 3.304123 | CGGTCATTTTTCTACCACGCAAA | 60.304 | 43.478 | 0.00 | 0.00 | 32.55 | 3.68 |
2221 | 2886 | 5.351233 | TTTTCTACCACGCAAACTACATG | 57.649 | 39.130 | 0.00 | 0.00 | 0.00 | 3.21 |
2222 | 2887 | 3.945981 | TCTACCACGCAAACTACATGA | 57.054 | 42.857 | 0.00 | 0.00 | 0.00 | 3.07 |
2238 | 2903 | 0.107456 | ATGACATGCCTCGATCCACC | 59.893 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
2251 | 2916 | 2.159707 | CGATCCACCGTTGAATGTGTTC | 60.160 | 50.000 | 0.00 | 0.00 | 34.85 | 3.18 |
2295 | 2960 | 5.883328 | TTGCTGATATACGACGAAACATC | 57.117 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
2311 | 2976 | 6.536582 | ACGAAACATCAAGATACATCCTCAAG | 59.463 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
2313 | 2978 | 5.363562 | ACATCAAGATACATCCTCAAGCA | 57.636 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
2314 | 2979 | 5.121811 | ACATCAAGATACATCCTCAAGCAC | 58.878 | 41.667 | 0.00 | 0.00 | 0.00 | 4.40 |
2317 | 2982 | 3.444703 | AGATACATCCTCAAGCACGAC | 57.555 | 47.619 | 0.00 | 0.00 | 0.00 | 4.34 |
2322 | 2987 | 1.126846 | CATCCTCAAGCACGACGAAAC | 59.873 | 52.381 | 0.00 | 0.00 | 0.00 | 2.78 |
2325 | 2990 | 0.878523 | CTCAAGCACGACGAAACCCA | 60.879 | 55.000 | 0.00 | 0.00 | 0.00 | 4.51 |
2338 | 3003 | 5.847515 | CGACGAAACCCAATAAAAACTGTAC | 59.152 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2339 | 3004 | 6.075762 | ACGAAACCCAATAAAAACTGTACC | 57.924 | 37.500 | 0.00 | 0.00 | 0.00 | 3.34 |
2431 | 3105 | 9.486857 | GAAGAAACCGCATAAAAGTAGATAAAC | 57.513 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
2438 | 3112 | 8.276325 | CCGCATAAAAGTAGATAAACATCTGAC | 58.724 | 37.037 | 0.00 | 0.00 | 32.36 | 3.51 |
2445 | 3119 | 9.654663 | AAAGTAGATAAACATCTGACAAGTACC | 57.345 | 33.333 | 0.00 | 0.00 | 32.36 | 3.34 |
2450 | 3124 | 4.810191 | AACATCTGACAAGTACCCTCTC | 57.190 | 45.455 | 0.00 | 0.00 | 0.00 | 3.20 |
2461 | 3135 | 4.489306 | AGTACCCTCTCATTTTACCTGC | 57.511 | 45.455 | 0.00 | 0.00 | 0.00 | 4.85 |
2483 | 3157 | 7.309133 | CCTGCACATAAAAGGACAGAAATGTTA | 60.309 | 37.037 | 0.00 | 0.00 | 32.43 | 2.41 |
2561 | 3236 | 5.923684 | TCTTTTAACAATCACGGCAAATTCC | 59.076 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2592 | 3267 | 5.398603 | AAACGAACATGGAAATTGCCATA | 57.601 | 34.783 | 18.17 | 0.00 | 46.70 | 2.74 |
2594 | 3269 | 4.743493 | ACGAACATGGAAATTGCCATAAC | 58.257 | 39.130 | 18.17 | 10.83 | 46.70 | 1.89 |
2595 | 3270 | 4.219507 | ACGAACATGGAAATTGCCATAACA | 59.780 | 37.500 | 18.17 | 0.00 | 46.70 | 2.41 |
2604 | 3279 | 5.994668 | GGAAATTGCCATAACAAAAGGTTCA | 59.005 | 36.000 | 0.00 | 0.00 | 40.96 | 3.18 |
2622 | 3297 | 6.527423 | AGGTTCATTTGTCATGCTTGAAAAT | 58.473 | 32.000 | 6.07 | 10.12 | 29.13 | 1.82 |
2623 | 3298 | 6.647895 | AGGTTCATTTGTCATGCTTGAAAATC | 59.352 | 34.615 | 6.07 | 0.00 | 29.13 | 2.17 |
2626 | 3301 | 6.160684 | TCATTTGTCATGCTTGAAAATCTGG | 58.839 | 36.000 | 6.07 | 4.09 | 29.13 | 3.86 |
2634 | 3309 | 1.743394 | CTTGAAAATCTGGCGTACCCC | 59.257 | 52.381 | 0.00 | 0.00 | 33.59 | 4.95 |
2635 | 3310 | 0.693622 | TGAAAATCTGGCGTACCCCA | 59.306 | 50.000 | 0.00 | 0.00 | 33.59 | 4.96 |
2636 | 3311 | 1.283613 | TGAAAATCTGGCGTACCCCAT | 59.716 | 47.619 | 0.00 | 0.00 | 33.64 | 4.00 |
2637 | 3312 | 1.947456 | GAAAATCTGGCGTACCCCATC | 59.053 | 52.381 | 0.00 | 0.00 | 33.64 | 3.51 |
2691 | 3366 | 9.300681 | TCAAAGTCCTAAAAGAAACATCATGAT | 57.699 | 29.630 | 1.18 | 1.18 | 0.00 | 2.45 |
2772 | 3447 | 9.967245 | GACAAATTTTGACCAAACTAGAAAAAC | 57.033 | 29.630 | 15.81 | 0.00 | 0.00 | 2.43 |
2773 | 3448 | 8.652463 | ACAAATTTTGACCAAACTAGAAAAACG | 58.348 | 29.630 | 15.81 | 0.00 | 0.00 | 3.60 |
2775 | 3450 | 9.857957 | AAATTTTGACCAAACTAGAAAAACGTA | 57.142 | 25.926 | 0.00 | 0.00 | 0.00 | 3.57 |
2801 | 3486 | 2.615747 | GCTAACCAGTCCCCAGAACTTC | 60.616 | 54.545 | 0.00 | 0.00 | 0.00 | 3.01 |
2809 | 3494 | 3.017442 | GTCCCCAGAACTTCCAAATAGC | 58.983 | 50.000 | 0.00 | 0.00 | 0.00 | 2.97 |
2875 | 3560 | 3.882888 | CAGTAAAGAAACCAACAGCTCCA | 59.117 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
2888 | 3573 | 3.037485 | GCTCCACGCTCTTACACTC | 57.963 | 57.895 | 0.00 | 0.00 | 35.14 | 3.51 |
2890 | 3575 | 0.803117 | CTCCACGCTCTTACACTCGA | 59.197 | 55.000 | 0.00 | 0.00 | 0.00 | 4.04 |
2891 | 3576 | 1.199327 | CTCCACGCTCTTACACTCGAA | 59.801 | 52.381 | 0.00 | 0.00 | 0.00 | 3.71 |
2931 | 3628 | 3.194542 | AGGAACACTCTGATTTCTCCTCG | 59.805 | 47.826 | 0.00 | 0.00 | 0.00 | 4.63 |
2932 | 3629 | 3.056465 | GGAACACTCTGATTTCTCCTCGT | 60.056 | 47.826 | 0.00 | 0.00 | 0.00 | 4.18 |
2933 | 3630 | 3.859411 | ACACTCTGATTTCTCCTCGTC | 57.141 | 47.619 | 0.00 | 0.00 | 0.00 | 4.20 |
2934 | 3631 | 2.494073 | ACACTCTGATTTCTCCTCGTCC | 59.506 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 1.506907 | TTCCTGGGGAGAGAGGACGA | 61.507 | 60.000 | 0.00 | 0.00 | 38.14 | 4.20 |
15 | 16 | 2.610859 | AGGGGGCGTGTCATTCCT | 60.611 | 61.111 | 0.00 | 0.00 | 0.00 | 3.36 |
17 | 18 | 2.511600 | CGAGGGGGCGTGTCATTC | 60.512 | 66.667 | 0.00 | 0.00 | 0.00 | 2.67 |
18 | 19 | 4.778143 | GCGAGGGGGCGTGTCATT | 62.778 | 66.667 | 0.00 | 0.00 | 0.00 | 2.57 |
96 | 102 | 4.253257 | CTAGAGCCGGTCGGTCGC | 62.253 | 72.222 | 11.25 | 5.53 | 44.07 | 5.19 |
97 | 103 | 4.253257 | GCTAGAGCCGGTCGGTCG | 62.253 | 72.222 | 11.25 | 0.00 | 44.07 | 4.79 |
142 | 148 | 1.219522 | GATCGGCGTTAATGGGGACG | 61.220 | 60.000 | 6.85 | 0.00 | 41.89 | 4.79 |
143 | 149 | 0.883370 | GGATCGGCGTTAATGGGGAC | 60.883 | 60.000 | 6.85 | 0.00 | 0.00 | 4.46 |
144 | 150 | 1.448497 | GGATCGGCGTTAATGGGGA | 59.552 | 57.895 | 6.85 | 0.00 | 0.00 | 4.81 |
145 | 151 | 1.959226 | CGGATCGGCGTTAATGGGG | 60.959 | 63.158 | 6.85 | 0.00 | 0.00 | 4.96 |
169 | 187 | 0.539986 | AAGTCCAGTGTGTTGGTCGT | 59.460 | 50.000 | 0.00 | 0.00 | 39.35 | 4.34 |
172 | 190 | 2.038387 | GACAAGTCCAGTGTGTTGGT | 57.962 | 50.000 | 0.00 | 0.00 | 39.35 | 3.67 |
183 | 201 | 1.737008 | GCGAAGGTCGGACAAGTCC | 60.737 | 63.158 | 10.76 | 9.22 | 46.18 | 3.85 |
185 | 203 | 2.342648 | GGCGAAGGTCGGACAAGT | 59.657 | 61.111 | 10.76 | 0.00 | 40.84 | 3.16 |
186 | 204 | 2.809601 | CGGCGAAGGTCGGACAAG | 60.810 | 66.667 | 10.76 | 0.00 | 40.84 | 3.16 |
240 | 317 | 1.957695 | TCGCATCGGCATCAGCATC | 60.958 | 57.895 | 0.00 | 0.00 | 44.61 | 3.91 |
241 | 318 | 2.109593 | TCGCATCGGCATCAGCAT | 59.890 | 55.556 | 0.00 | 0.00 | 44.61 | 3.79 |
242 | 319 | 2.891936 | GTCGCATCGGCATCAGCA | 60.892 | 61.111 | 0.00 | 0.00 | 44.61 | 4.41 |
243 | 320 | 3.993234 | CGTCGCATCGGCATCAGC | 61.993 | 66.667 | 0.00 | 0.00 | 41.24 | 4.26 |
244 | 321 | 1.662760 | ATCGTCGCATCGGCATCAG | 60.663 | 57.895 | 0.00 | 0.00 | 41.24 | 2.90 |
245 | 322 | 1.950630 | CATCGTCGCATCGGCATCA | 60.951 | 57.895 | 0.00 | 0.00 | 41.24 | 3.07 |
329 | 436 | 1.254954 | GTACCGGTCAAGTCCAGACT | 58.745 | 55.000 | 12.40 | 0.00 | 44.94 | 3.24 |
343 | 450 | 2.813908 | GAGTTGGCGCTGGTACCG | 60.814 | 66.667 | 7.64 | 3.32 | 0.00 | 4.02 |
346 | 458 | 1.539388 | CAAATTGAGTTGGCGCTGGTA | 59.461 | 47.619 | 7.64 | 0.00 | 0.00 | 3.25 |
354 | 466 | 4.885413 | TGGAATCTTGCAAATTGAGTTGG | 58.115 | 39.130 | 0.00 | 0.00 | 0.00 | 3.77 |
355 | 467 | 5.579511 | GGATGGAATCTTGCAAATTGAGTTG | 59.420 | 40.000 | 0.00 | 0.00 | 44.71 | 3.16 |
356 | 468 | 5.246656 | TGGATGGAATCTTGCAAATTGAGTT | 59.753 | 36.000 | 0.00 | 0.00 | 44.71 | 3.01 |
357 | 469 | 4.773674 | TGGATGGAATCTTGCAAATTGAGT | 59.226 | 37.500 | 0.00 | 0.00 | 44.71 | 3.41 |
358 | 470 | 5.333299 | TGGATGGAATCTTGCAAATTGAG | 57.667 | 39.130 | 0.00 | 0.00 | 44.71 | 3.02 |
359 | 471 | 5.659525 | AGATGGATGGAATCTTGCAAATTGA | 59.340 | 36.000 | 0.00 | 0.00 | 44.71 | 2.57 |
363 | 475 | 6.367161 | TGATAGATGGATGGAATCTTGCAAA | 58.633 | 36.000 | 0.00 | 0.00 | 44.71 | 3.68 |
447 | 572 | 2.622962 | CCAAGGAAACCGAACGGCC | 61.623 | 63.158 | 13.32 | 6.71 | 39.32 | 6.13 |
488 | 631 | 1.115467 | TTAGCAGCAGGAGTAGGAGC | 58.885 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
554 | 702 | 4.045104 | GCGTTCTATCTATGTCTGTGTGG | 58.955 | 47.826 | 0.00 | 0.00 | 0.00 | 4.17 |
555 | 703 | 3.726235 | CGCGTTCTATCTATGTCTGTGTG | 59.274 | 47.826 | 0.00 | 0.00 | 0.00 | 3.82 |
556 | 704 | 3.626217 | TCGCGTTCTATCTATGTCTGTGT | 59.374 | 43.478 | 5.77 | 0.00 | 0.00 | 3.72 |
557 | 705 | 3.969352 | GTCGCGTTCTATCTATGTCTGTG | 59.031 | 47.826 | 5.77 | 0.00 | 0.00 | 3.66 |
567 | 719 | 1.521749 | CGTCAGCGTCGCGTTCTATC | 61.522 | 60.000 | 12.30 | 0.00 | 0.00 | 2.08 |
606 | 770 | 2.425592 | CTTCCTCCACCGTGCACA | 59.574 | 61.111 | 18.64 | 0.00 | 0.00 | 4.57 |
628 | 792 | 1.153549 | GCTCTCCTTGCGTCCGAAT | 60.154 | 57.895 | 0.00 | 0.00 | 0.00 | 3.34 |
650 | 814 | 3.446570 | CGTACGGCCGGAGAACCT | 61.447 | 66.667 | 31.76 | 9.01 | 0.00 | 3.50 |
713 | 884 | 0.400594 | GCCCATGGGGTGTCCTATAC | 59.599 | 60.000 | 32.23 | 7.45 | 46.51 | 1.47 |
755 | 934 | 1.283029 | TGGTCGTGGGCTACTAGTAGT | 59.717 | 52.381 | 26.76 | 8.14 | 35.65 | 2.73 |
756 | 935 | 2.048444 | TGGTCGTGGGCTACTAGTAG | 57.952 | 55.000 | 23.25 | 23.25 | 36.29 | 2.57 |
757 | 936 | 2.094675 | GTTGGTCGTGGGCTACTAGTA | 58.905 | 52.381 | 1.89 | 1.89 | 0.00 | 1.82 |
856 | 1084 | 0.188342 | AGGAGAGGGATGGAGAGAGC | 59.812 | 60.000 | 0.00 | 0.00 | 0.00 | 4.09 |
865 | 1093 | 1.423161 | GCAATTAGCCAGGAGAGGGAT | 59.577 | 52.381 | 0.00 | 0.00 | 37.23 | 3.85 |
1075 | 1512 | 3.268965 | GACTGACCTGCGCGAGTGA | 62.269 | 63.158 | 12.10 | 0.00 | 0.00 | 3.41 |
1117 | 1570 | 0.036765 | TACGTTGCTTGCCGGAGAAT | 60.037 | 50.000 | 5.05 | 0.00 | 0.00 | 2.40 |
1524 | 2053 | 3.121030 | CGAACTGCGGCAGGAAGG | 61.121 | 66.667 | 31.38 | 15.04 | 35.51 | 3.46 |
1603 | 2213 | 3.640407 | GGTGGCCAGGTGAGCTCA | 61.640 | 66.667 | 13.74 | 13.74 | 0.00 | 4.26 |
1635 | 2245 | 1.153086 | GATCATCAGTTGCCGGCCT | 60.153 | 57.895 | 26.77 | 12.40 | 0.00 | 5.19 |
1678 | 2307 | 2.302260 | TGATAGAACAGGAGCCTCGAG | 58.698 | 52.381 | 5.13 | 5.13 | 0.00 | 4.04 |
1726 | 2359 | 5.050091 | CACACTGCAGACTGGTAAAAGTAAG | 60.050 | 44.000 | 23.35 | 0.00 | 0.00 | 2.34 |
1728 | 2361 | 4.141801 | ACACACTGCAGACTGGTAAAAGTA | 60.142 | 41.667 | 23.35 | 0.00 | 0.00 | 2.24 |
1729 | 2362 | 3.206150 | CACACTGCAGACTGGTAAAAGT | 58.794 | 45.455 | 23.35 | 0.00 | 0.00 | 2.66 |
1730 | 2363 | 3.206150 | ACACACTGCAGACTGGTAAAAG | 58.794 | 45.455 | 23.35 | 3.82 | 0.00 | 2.27 |
1776 | 2421 | 3.113260 | AGAAACACTGCAGACTGGTAC | 57.887 | 47.619 | 23.35 | 10.18 | 0.00 | 3.34 |
1777 | 2422 | 3.388024 | AGAAGAAACACTGCAGACTGGTA | 59.612 | 43.478 | 23.35 | 0.00 | 0.00 | 3.25 |
1779 | 2424 | 2.547211 | CAGAAGAAACACTGCAGACTGG | 59.453 | 50.000 | 23.35 | 9.22 | 0.00 | 4.00 |
1780 | 2425 | 3.461061 | TCAGAAGAAACACTGCAGACTG | 58.539 | 45.455 | 23.35 | 12.08 | 34.57 | 3.51 |
1781 | 2426 | 3.827008 | TCAGAAGAAACACTGCAGACT | 57.173 | 42.857 | 23.35 | 8.36 | 34.57 | 3.24 |
1782 | 2427 | 3.364764 | GCATCAGAAGAAACACTGCAGAC | 60.365 | 47.826 | 23.35 | 6.14 | 34.57 | 3.51 |
1783 | 2428 | 2.810274 | GCATCAGAAGAAACACTGCAGA | 59.190 | 45.455 | 23.35 | 0.00 | 34.57 | 4.26 |
1786 | 2431 | 3.911661 | AAGCATCAGAAGAAACACTGC | 57.088 | 42.857 | 0.00 | 0.00 | 34.57 | 4.40 |
1789 | 2434 | 8.718102 | TTATACCTAAGCATCAGAAGAAACAC | 57.282 | 34.615 | 0.00 | 0.00 | 0.00 | 3.32 |
1790 | 2435 | 9.905713 | ATTTATACCTAAGCATCAGAAGAAACA | 57.094 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
1800 | 2461 | 6.402550 | CGCCACATCATTTATACCTAAGCATC | 60.403 | 42.308 | 0.00 | 0.00 | 0.00 | 3.91 |
1829 | 2494 | 4.592351 | TCATGGTCCATTGGTTCAAACAAT | 59.408 | 37.500 | 0.00 | 0.00 | 39.00 | 2.71 |
1881 | 2546 | 4.699735 | TCACGGACCGAGTTACATACTTAA | 59.300 | 41.667 | 23.38 | 0.00 | 37.17 | 1.85 |
1882 | 2547 | 4.260985 | TCACGGACCGAGTTACATACTTA | 58.739 | 43.478 | 23.38 | 0.00 | 37.17 | 2.24 |
1883 | 2548 | 3.084039 | TCACGGACCGAGTTACATACTT | 58.916 | 45.455 | 23.38 | 0.00 | 37.17 | 2.24 |
1884 | 2549 | 2.715046 | TCACGGACCGAGTTACATACT | 58.285 | 47.619 | 23.38 | 0.00 | 40.71 | 2.12 |
1885 | 2550 | 3.119708 | ACTTCACGGACCGAGTTACATAC | 60.120 | 47.826 | 23.38 | 0.00 | 0.00 | 2.39 |
1886 | 2551 | 3.084039 | ACTTCACGGACCGAGTTACATA | 58.916 | 45.455 | 23.38 | 0.00 | 0.00 | 2.29 |
1887 | 2552 | 1.891150 | ACTTCACGGACCGAGTTACAT | 59.109 | 47.619 | 23.38 | 0.00 | 0.00 | 2.29 |
1888 | 2553 | 1.001048 | CACTTCACGGACCGAGTTACA | 60.001 | 52.381 | 23.38 | 0.00 | 0.00 | 2.41 |
1895 | 2560 | 7.884816 | AAATATTATATCACTTCACGGACCG | 57.115 | 36.000 | 13.61 | 13.61 | 0.00 | 4.79 |
1948 | 2613 | 3.257873 | CCAATAATTGAGCAACCACACCA | 59.742 | 43.478 | 0.00 | 0.00 | 0.00 | 4.17 |
1988 | 2653 | 3.053831 | ACATTTCGTAGTTCCCCACTG | 57.946 | 47.619 | 0.00 | 0.00 | 35.97 | 3.66 |
1999 | 2664 | 9.599866 | AGTTCATGATGAAGATAACATTTCGTA | 57.400 | 29.630 | 8.33 | 0.00 | 37.00 | 3.43 |
2012 | 2677 | 8.777865 | TTTCCTAGTGTAAGTTCATGATGAAG | 57.222 | 34.615 | 8.33 | 0.00 | 37.00 | 3.02 |
2015 | 2680 | 8.660373 | GTTCTTTCCTAGTGTAAGTTCATGATG | 58.340 | 37.037 | 0.00 | 0.00 | 0.00 | 3.07 |
2031 | 2696 | 8.736244 | GCCACTACATTTATTTGTTCTTTCCTA | 58.264 | 33.333 | 0.00 | 0.00 | 0.00 | 2.94 |
2034 | 2699 | 7.062255 | GCAGCCACTACATTTATTTGTTCTTTC | 59.938 | 37.037 | 0.00 | 0.00 | 0.00 | 2.62 |
2035 | 2700 | 6.868339 | GCAGCCACTACATTTATTTGTTCTTT | 59.132 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
2037 | 2702 | 5.711976 | AGCAGCCACTACATTTATTTGTTCT | 59.288 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2038 | 2703 | 5.954335 | AGCAGCCACTACATTTATTTGTTC | 58.046 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
2039 | 2704 | 5.982890 | AGCAGCCACTACATTTATTTGTT | 57.017 | 34.783 | 0.00 | 0.00 | 0.00 | 2.83 |
2041 | 2706 | 8.840321 | AGTTATAGCAGCCACTACATTTATTTG | 58.160 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
2042 | 2707 | 8.980481 | AGTTATAGCAGCCACTACATTTATTT | 57.020 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
2044 | 2709 | 8.647796 | TGTAGTTATAGCAGCCACTACATTTAT | 58.352 | 33.333 | 15.63 | 0.00 | 44.21 | 1.40 |
2046 | 2711 | 6.884832 | TGTAGTTATAGCAGCCACTACATTT | 58.115 | 36.000 | 15.63 | 0.00 | 44.21 | 2.32 |
2047 | 2712 | 6.479972 | TGTAGTTATAGCAGCCACTACATT | 57.520 | 37.500 | 15.63 | 0.00 | 44.21 | 2.71 |
2050 | 2715 | 5.258456 | TGTGTAGTTATAGCAGCCACTAC | 57.742 | 43.478 | 12.08 | 12.08 | 41.33 | 2.73 |
2051 | 2716 | 5.925506 | TTGTGTAGTTATAGCAGCCACTA | 57.074 | 39.130 | 0.00 | 0.00 | 0.00 | 2.74 |
2052 | 2717 | 4.819105 | TTGTGTAGTTATAGCAGCCACT | 57.181 | 40.909 | 0.00 | 0.00 | 0.00 | 4.00 |
2055 | 2720 | 6.984474 | TCTGTAATTGTGTAGTTATAGCAGCC | 59.016 | 38.462 | 0.00 | 0.00 | 0.00 | 4.85 |
2056 | 2721 | 7.921214 | TCTCTGTAATTGTGTAGTTATAGCAGC | 59.079 | 37.037 | 0.00 | 0.00 | 0.00 | 5.25 |
2057 | 2722 | 9.457110 | CTCTCTGTAATTGTGTAGTTATAGCAG | 57.543 | 37.037 | 0.00 | 0.00 | 0.00 | 4.24 |
2058 | 2723 | 8.414003 | CCTCTCTGTAATTGTGTAGTTATAGCA | 58.586 | 37.037 | 0.00 | 0.00 | 0.00 | 3.49 |
2059 | 2724 | 7.382759 | GCCTCTCTGTAATTGTGTAGTTATAGC | 59.617 | 40.741 | 0.00 | 0.00 | 0.00 | 2.97 |
2060 | 2725 | 8.634444 | AGCCTCTCTGTAATTGTGTAGTTATAG | 58.366 | 37.037 | 0.00 | 0.00 | 0.00 | 1.31 |
2061 | 2726 | 8.534954 | AGCCTCTCTGTAATTGTGTAGTTATA | 57.465 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
2062 | 2727 | 7.425224 | AGCCTCTCTGTAATTGTGTAGTTAT | 57.575 | 36.000 | 0.00 | 0.00 | 0.00 | 1.89 |
2063 | 2728 | 6.852420 | AGCCTCTCTGTAATTGTGTAGTTA | 57.148 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
2064 | 2729 | 5.746990 | AGCCTCTCTGTAATTGTGTAGTT | 57.253 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
2065 | 2730 | 5.482908 | CAAGCCTCTCTGTAATTGTGTAGT | 58.517 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
2066 | 2731 | 4.331168 | GCAAGCCTCTCTGTAATTGTGTAG | 59.669 | 45.833 | 0.00 | 0.00 | 0.00 | 2.74 |
2067 | 2732 | 4.253685 | GCAAGCCTCTCTGTAATTGTGTA | 58.746 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
2068 | 2733 | 3.077359 | GCAAGCCTCTCTGTAATTGTGT | 58.923 | 45.455 | 0.00 | 0.00 | 0.00 | 3.72 |
2069 | 2734 | 3.076621 | TGCAAGCCTCTCTGTAATTGTG | 58.923 | 45.455 | 0.00 | 0.00 | 0.00 | 3.33 |
2070 | 2735 | 3.423539 | TGCAAGCCTCTCTGTAATTGT | 57.576 | 42.857 | 0.00 | 0.00 | 0.00 | 2.71 |
2071 | 2736 | 3.002042 | CGATGCAAGCCTCTCTGTAATTG | 59.998 | 47.826 | 0.00 | 0.00 | 0.00 | 2.32 |
2072 | 2737 | 3.118629 | TCGATGCAAGCCTCTCTGTAATT | 60.119 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
2073 | 2738 | 2.432146 | TCGATGCAAGCCTCTCTGTAAT | 59.568 | 45.455 | 0.00 | 0.00 | 0.00 | 1.89 |
2074 | 2739 | 1.824852 | TCGATGCAAGCCTCTCTGTAA | 59.175 | 47.619 | 0.00 | 0.00 | 0.00 | 2.41 |
2075 | 2740 | 1.135139 | GTCGATGCAAGCCTCTCTGTA | 59.865 | 52.381 | 0.00 | 0.00 | 0.00 | 2.74 |
2076 | 2741 | 0.108424 | GTCGATGCAAGCCTCTCTGT | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2077 | 2742 | 0.108472 | TGTCGATGCAAGCCTCTCTG | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 3.35 |
2078 | 2743 | 0.175302 | CTGTCGATGCAAGCCTCTCT | 59.825 | 55.000 | 0.00 | 0.00 | 0.00 | 3.10 |
2079 | 2744 | 0.108424 | ACTGTCGATGCAAGCCTCTC | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 3.20 |
2080 | 2745 | 1.135915 | CTACTGTCGATGCAAGCCTCT | 59.864 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
2081 | 2746 | 1.135139 | TCTACTGTCGATGCAAGCCTC | 59.865 | 52.381 | 0.00 | 0.00 | 0.00 | 4.70 |
2082 | 2747 | 1.186200 | TCTACTGTCGATGCAAGCCT | 58.814 | 50.000 | 0.00 | 0.00 | 0.00 | 4.58 |
2083 | 2748 | 2.010145 | TTCTACTGTCGATGCAAGCC | 57.990 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2084 | 2749 | 3.254060 | TCTTTCTACTGTCGATGCAAGC | 58.746 | 45.455 | 0.00 | 0.00 | 0.00 | 4.01 |
2085 | 2750 | 4.201532 | CGTTCTTTCTACTGTCGATGCAAG | 60.202 | 45.833 | 0.00 | 0.00 | 0.00 | 4.01 |
2086 | 2751 | 3.673338 | CGTTCTTTCTACTGTCGATGCAA | 59.327 | 43.478 | 0.00 | 0.00 | 0.00 | 4.08 |
2087 | 2752 | 3.242518 | CGTTCTTTCTACTGTCGATGCA | 58.757 | 45.455 | 0.00 | 0.00 | 0.00 | 3.96 |
2088 | 2753 | 2.599082 | CCGTTCTTTCTACTGTCGATGC | 59.401 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
2089 | 2754 | 3.608506 | CACCGTTCTTTCTACTGTCGATG | 59.391 | 47.826 | 0.00 | 0.00 | 0.00 | 3.84 |
2090 | 2755 | 3.255149 | ACACCGTTCTTTCTACTGTCGAT | 59.745 | 43.478 | 0.00 | 0.00 | 0.00 | 3.59 |
2091 | 2756 | 2.620115 | ACACCGTTCTTTCTACTGTCGA | 59.380 | 45.455 | 0.00 | 0.00 | 0.00 | 4.20 |
2092 | 2757 | 2.724690 | CACACCGTTCTTTCTACTGTCG | 59.275 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2093 | 2758 | 3.057734 | CCACACCGTTCTTTCTACTGTC | 58.942 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2094 | 2759 | 2.433239 | ACCACACCGTTCTTTCTACTGT | 59.567 | 45.455 | 0.00 | 0.00 | 0.00 | 3.55 |
2095 | 2760 | 3.107642 | ACCACACCGTTCTTTCTACTG | 57.892 | 47.619 | 0.00 | 0.00 | 0.00 | 2.74 |
2096 | 2761 | 3.832615 | AACCACACCGTTCTTTCTACT | 57.167 | 42.857 | 0.00 | 0.00 | 0.00 | 2.57 |
2097 | 2762 | 3.060070 | CGAAACCACACCGTTCTTTCTAC | 60.060 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
2098 | 2763 | 3.125316 | CGAAACCACACCGTTCTTTCTA | 58.875 | 45.455 | 0.00 | 0.00 | 0.00 | 2.10 |
2099 | 2764 | 1.937899 | CGAAACCACACCGTTCTTTCT | 59.062 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
2100 | 2765 | 1.003223 | CCGAAACCACACCGTTCTTTC | 60.003 | 52.381 | 0.00 | 0.00 | 0.00 | 2.62 |
2101 | 2766 | 1.018910 | CCGAAACCACACCGTTCTTT | 58.981 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2102 | 2767 | 0.816421 | CCCGAAACCACACCGTTCTT | 60.816 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2103 | 2768 | 1.227734 | CCCGAAACCACACCGTTCT | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 3.01 |
2104 | 2769 | 1.226030 | CTCCCGAAACCACACCGTTC | 61.226 | 60.000 | 0.00 | 0.00 | 0.00 | 3.95 |
2105 | 2770 | 1.227734 | CTCCCGAAACCACACCGTT | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 4.44 |
2106 | 2771 | 2.424302 | CTCCCGAAACCACACCGT | 59.576 | 61.111 | 0.00 | 0.00 | 0.00 | 4.83 |
2107 | 2772 | 1.959226 | CACTCCCGAAACCACACCG | 60.959 | 63.158 | 0.00 | 0.00 | 0.00 | 4.94 |
2108 | 2773 | 0.602905 | CTCACTCCCGAAACCACACC | 60.603 | 60.000 | 0.00 | 0.00 | 0.00 | 4.16 |
2109 | 2774 | 1.228657 | GCTCACTCCCGAAACCACAC | 61.229 | 60.000 | 0.00 | 0.00 | 0.00 | 3.82 |
2110 | 2775 | 1.070786 | GCTCACTCCCGAAACCACA | 59.929 | 57.895 | 0.00 | 0.00 | 0.00 | 4.17 |
2111 | 2776 | 0.670854 | GAGCTCACTCCCGAAACCAC | 60.671 | 60.000 | 9.40 | 0.00 | 36.90 | 4.16 |
2112 | 2777 | 0.832135 | AGAGCTCACTCCCGAAACCA | 60.832 | 55.000 | 17.77 | 0.00 | 44.65 | 3.67 |
2113 | 2778 | 0.108567 | GAGAGCTCACTCCCGAAACC | 60.109 | 60.000 | 17.77 | 0.00 | 44.65 | 3.27 |
2114 | 2779 | 0.603569 | TGAGAGCTCACTCCCGAAAC | 59.396 | 55.000 | 17.77 | 0.00 | 44.65 | 2.78 |
2115 | 2780 | 1.273606 | CTTGAGAGCTCACTCCCGAAA | 59.726 | 52.381 | 17.77 | 0.00 | 44.65 | 3.46 |
2116 | 2781 | 0.891373 | CTTGAGAGCTCACTCCCGAA | 59.109 | 55.000 | 17.77 | 0.00 | 44.65 | 4.30 |
2117 | 2782 | 0.967887 | CCTTGAGAGCTCACTCCCGA | 60.968 | 60.000 | 17.77 | 0.00 | 44.65 | 5.14 |
2118 | 2783 | 1.515020 | CCTTGAGAGCTCACTCCCG | 59.485 | 63.158 | 17.77 | 0.00 | 44.65 | 5.14 |
2119 | 2784 | 1.220477 | GCCTTGAGAGCTCACTCCC | 59.780 | 63.158 | 17.77 | 0.00 | 44.65 | 4.30 |
2120 | 2785 | 0.390998 | GTGCCTTGAGAGCTCACTCC | 60.391 | 60.000 | 17.77 | 2.51 | 44.65 | 3.85 |
2121 | 2786 | 0.390998 | GGTGCCTTGAGAGCTCACTC | 60.391 | 60.000 | 17.77 | 6.24 | 43.82 | 3.51 |
2122 | 2787 | 1.123861 | TGGTGCCTTGAGAGCTCACT | 61.124 | 55.000 | 17.77 | 0.00 | 39.66 | 3.41 |
2123 | 2788 | 0.250467 | TTGGTGCCTTGAGAGCTCAC | 60.250 | 55.000 | 17.77 | 10.80 | 39.66 | 3.51 |
2124 | 2789 | 0.473755 | TTTGGTGCCTTGAGAGCTCA | 59.526 | 50.000 | 17.77 | 0.00 | 37.91 | 4.26 |
2125 | 2790 | 1.268079 | GTTTTGGTGCCTTGAGAGCTC | 59.732 | 52.381 | 5.27 | 5.27 | 0.00 | 4.09 |
2126 | 2791 | 1.322442 | GTTTTGGTGCCTTGAGAGCT | 58.678 | 50.000 | 0.00 | 0.00 | 0.00 | 4.09 |
2127 | 2792 | 1.000938 | CTGTTTTGGTGCCTTGAGAGC | 60.001 | 52.381 | 0.00 | 0.00 | 0.00 | 4.09 |
2151 | 2816 | 6.609237 | TTGAGATCACTCTGTTGAAAGTTG | 57.391 | 37.500 | 0.00 | 0.00 | 42.99 | 3.16 |
2177 | 2842 | 5.424121 | AATGACCGTTGAAAGTTTCTCTG | 57.576 | 39.130 | 16.33 | 8.61 | 0.00 | 3.35 |
2183 | 2848 | 6.095720 | TGGTAGAAAAATGACCGTTGAAAGTT | 59.904 | 34.615 | 0.00 | 0.00 | 35.91 | 2.66 |
2184 | 2849 | 5.591067 | TGGTAGAAAAATGACCGTTGAAAGT | 59.409 | 36.000 | 0.00 | 0.00 | 35.91 | 2.66 |
2187 | 2852 | 4.024725 | CGTGGTAGAAAAATGACCGTTGAA | 60.025 | 41.667 | 0.00 | 0.00 | 35.91 | 2.69 |
2214 | 2879 | 2.036475 | GGATCGAGGCATGTCATGTAGT | 59.964 | 50.000 | 14.26 | 0.00 | 0.00 | 2.73 |
2221 | 2886 | 1.592669 | CGGTGGATCGAGGCATGTC | 60.593 | 63.158 | 0.00 | 0.00 | 0.00 | 3.06 |
2222 | 2887 | 1.899437 | AACGGTGGATCGAGGCATGT | 61.899 | 55.000 | 0.00 | 0.00 | 0.00 | 3.21 |
2238 | 2903 | 5.094429 | TGAATCACTGAACACATTCAACG | 57.906 | 39.130 | 0.00 | 0.00 | 44.28 | 4.10 |
2251 | 2916 | 1.452110 | TTGGGACGCATGAATCACTG | 58.548 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
2295 | 2960 | 3.553511 | GTCGTGCTTGAGGATGTATCTTG | 59.446 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
2311 | 2976 | 2.973419 | TTTATTGGGTTTCGTCGTGC | 57.027 | 45.000 | 0.00 | 0.00 | 0.00 | 5.34 |
2313 | 2978 | 4.336153 | ACAGTTTTTATTGGGTTTCGTCGT | 59.664 | 37.500 | 0.00 | 0.00 | 0.00 | 4.34 |
2314 | 2979 | 4.851010 | ACAGTTTTTATTGGGTTTCGTCG | 58.149 | 39.130 | 0.00 | 0.00 | 0.00 | 5.12 |
2317 | 2982 | 5.916320 | GTGGTACAGTTTTTATTGGGTTTCG | 59.084 | 40.000 | 0.00 | 0.00 | 41.80 | 3.46 |
2322 | 2987 | 9.765795 | TTTTTATGTGGTACAGTTTTTATTGGG | 57.234 | 29.630 | 0.00 | 0.00 | 41.80 | 4.12 |
2419 | 3093 | 9.654663 | GGTACTTGTCAGATGTTTATCTACTTT | 57.345 | 33.333 | 0.00 | 0.00 | 41.71 | 2.66 |
2431 | 3105 | 5.350504 | AATGAGAGGGTACTTGTCAGATG | 57.649 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
2438 | 3112 | 4.636206 | GCAGGTAAAATGAGAGGGTACTTG | 59.364 | 45.833 | 0.00 | 0.00 | 0.00 | 3.16 |
2445 | 3119 | 6.757897 | TTTATGTGCAGGTAAAATGAGAGG | 57.242 | 37.500 | 0.00 | 0.00 | 0.00 | 3.69 |
2450 | 3124 | 6.686630 | TGTCCTTTTATGTGCAGGTAAAATG | 58.313 | 36.000 | 13.56 | 11.75 | 31.56 | 2.32 |
2494 | 3168 | 1.952367 | GCCATGCTTAGCCAGTGAACT | 60.952 | 52.381 | 0.29 | 0.00 | 0.00 | 3.01 |
2531 | 3206 | 5.176590 | TGCCGTGATTGTTAAAAGAAATTGC | 59.823 | 36.000 | 0.00 | 0.00 | 0.00 | 3.56 |
2534 | 3209 | 7.961325 | ATTTGCCGTGATTGTTAAAAGAAAT | 57.039 | 28.000 | 0.00 | 0.00 | 0.00 | 2.17 |
2572 | 3247 | 4.219507 | TGTTATGGCAATTTCCATGTTCGT | 59.780 | 37.500 | 18.60 | 0.00 | 45.84 | 3.85 |
2573 | 3248 | 4.742417 | TGTTATGGCAATTTCCATGTTCG | 58.258 | 39.130 | 18.60 | 0.00 | 45.84 | 3.95 |
2585 | 3260 | 6.352516 | ACAAATGAACCTTTTGTTATGGCAA | 58.647 | 32.000 | 0.00 | 0.00 | 42.96 | 4.52 |
2592 | 3267 | 5.673514 | AGCATGACAAATGAACCTTTTGTT | 58.326 | 33.333 | 0.00 | 0.00 | 44.90 | 2.83 |
2594 | 3269 | 5.754406 | TCAAGCATGACAAATGAACCTTTTG | 59.246 | 36.000 | 0.00 | 0.00 | 39.43 | 2.44 |
2595 | 3270 | 5.916318 | TCAAGCATGACAAATGAACCTTTT | 58.084 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
2604 | 3279 | 4.933400 | GCCAGATTTTCAAGCATGACAAAT | 59.067 | 37.500 | 0.00 | 10.00 | 34.61 | 2.32 |
2609 | 3284 | 2.161855 | ACGCCAGATTTTCAAGCATGA | 58.838 | 42.857 | 0.00 | 0.00 | 0.00 | 3.07 |
2622 | 3297 | 0.693622 | TTTTGATGGGGTACGCCAGA | 59.306 | 50.000 | 32.09 | 20.48 | 42.25 | 3.86 |
2623 | 3298 | 1.201414 | GTTTTTGATGGGGTACGCCAG | 59.799 | 52.381 | 32.09 | 0.00 | 42.25 | 4.85 |
2626 | 3301 | 3.372660 | TTTGTTTTTGATGGGGTACGC | 57.627 | 42.857 | 0.29 | 0.29 | 43.69 | 4.42 |
2635 | 3310 | 5.634859 | GGCGAACATCAGATTTGTTTTTGAT | 59.365 | 36.000 | 0.00 | 0.00 | 37.43 | 2.57 |
2636 | 3311 | 4.981674 | GGCGAACATCAGATTTGTTTTTGA | 59.018 | 37.500 | 0.00 | 0.00 | 37.43 | 2.69 |
2637 | 3312 | 4.744137 | TGGCGAACATCAGATTTGTTTTTG | 59.256 | 37.500 | 0.00 | 0.00 | 37.43 | 2.44 |
2734 | 3409 | 8.908903 | TGGTCAAAATTTGTCTTGTTACATAGT | 58.091 | 29.630 | 5.56 | 0.00 | 0.00 | 2.12 |
2735 | 3410 | 9.743057 | TTGGTCAAAATTTGTCTTGTTACATAG | 57.257 | 29.630 | 5.56 | 0.00 | 0.00 | 2.23 |
2737 | 3412 | 8.878769 | GTTTGGTCAAAATTTGTCTTGTTACAT | 58.121 | 29.630 | 5.56 | 0.00 | 31.33 | 2.29 |
2738 | 3413 | 8.091449 | AGTTTGGTCAAAATTTGTCTTGTTACA | 58.909 | 29.630 | 5.56 | 0.00 | 31.33 | 2.41 |
2739 | 3414 | 8.474006 | AGTTTGGTCAAAATTTGTCTTGTTAC | 57.526 | 30.769 | 5.56 | 0.00 | 31.33 | 2.50 |
2772 | 3447 | 1.571919 | GGACTGGTTAGCATGCTACG | 58.428 | 55.000 | 26.87 | 16.72 | 0.00 | 3.51 |
2773 | 3448 | 1.475213 | GGGGACTGGTTAGCATGCTAC | 60.475 | 57.143 | 26.87 | 19.88 | 0.00 | 3.58 |
2775 | 3450 | 1.207488 | TGGGGACTGGTTAGCATGCT | 61.207 | 55.000 | 25.99 | 25.99 | 0.00 | 3.79 |
2801 | 3486 | 6.166984 | TCACCTAGAATCTCAGCTATTTGG | 57.833 | 41.667 | 0.00 | 0.00 | 0.00 | 3.28 |
2809 | 3494 | 4.464244 | TCACCAGTTCACCTAGAATCTCAG | 59.536 | 45.833 | 0.00 | 0.00 | 38.76 | 3.35 |
2847 | 3532 | 7.450903 | AGCTGTTGGTTTCTTTACTGTATAGT | 58.549 | 34.615 | 0.00 | 0.00 | 40.99 | 2.12 |
2851 | 3536 | 5.061179 | GGAGCTGTTGGTTTCTTTACTGTA | 58.939 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
2875 | 3560 | 2.358267 | CCCTATTCGAGTGTAAGAGCGT | 59.642 | 50.000 | 0.00 | 0.00 | 0.00 | 5.07 |
2888 | 3573 | 4.576463 | CCTGAATTCTGGTTTCCCTATTCG | 59.424 | 45.833 | 20.30 | 0.00 | 31.79 | 3.34 |
2890 | 3575 | 5.796502 | TCCTGAATTCTGGTTTCCCTATT | 57.203 | 39.130 | 25.50 | 0.00 | 36.48 | 1.73 |
2891 | 3576 | 5.015178 | TGTTCCTGAATTCTGGTTTCCCTAT | 59.985 | 40.000 | 25.50 | 0.00 | 36.48 | 2.57 |
2903 | 3600 | 6.093357 | GGAGAAATCAGAGTGTTCCTGAATTC | 59.907 | 42.308 | 11.07 | 11.07 | 44.67 | 2.17 |
2909 | 3606 | 3.194542 | CGAGGAGAAATCAGAGTGTTCCT | 59.805 | 47.826 | 3.68 | 3.68 | 36.34 | 3.36 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.