Multiple sequence alignment - TraesCS2B01G592100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G592100 chr2B 100.000 3089 0 0 1 3089 777328899 777331987 0.000000e+00 5705.0
1 TraesCS2B01G592100 chr2D 92.195 2729 138 29 396 3089 634295263 634297951 0.000000e+00 3790.0
2 TraesCS2B01G592100 chr2A 91.400 2035 117 20 540 2549 779217757 779215756 0.000000e+00 2736.0
3 TraesCS2B01G592100 chr2A 88.776 490 18 15 2633 3089 779215755 779215270 1.610000e-157 566.0
4 TraesCS2B01G592100 chr2A 92.424 132 10 0 417 548 779217933 779217802 4.070000e-44 189.0
5 TraesCS2B01G592100 chr2A 85.542 83 12 0 193 275 721071260 721071342 1.530000e-13 87.9
6 TraesCS2B01G592100 chr6D 86.810 326 43 0 1154 1479 220937165 220936840 6.300000e-97 364.0
7 TraesCS2B01G592100 chr6D 93.590 78 5 0 1820 1897 220936009 220935932 1.950000e-22 117.0
8 TraesCS2B01G592100 chr6D 84.211 114 13 5 2 110 432873644 432873531 4.210000e-19 106.0
9 TraesCS2B01G592100 chr6B 86.810 326 43 0 1154 1479 396436180 396435855 6.300000e-97 364.0
10 TraesCS2B01G592100 chr6B 93.590 78 5 0 1820 1897 396435026 396434949 1.950000e-22 117.0
11 TraesCS2B01G592100 chr6A 93.590 78 5 0 1820 1897 302781380 302781457 1.950000e-22 117.0
12 TraesCS2B01G592100 chr4B 75.391 256 43 13 42 279 641400068 641399815 4.210000e-19 106.0
13 TraesCS2B01G592100 chr4B 85.294 102 11 3 6 105 79611553 79611454 5.450000e-18 102.0
14 TraesCS2B01G592100 chr4B 80.303 132 23 3 4 133 189986914 189987044 2.540000e-16 97.1
15 TraesCS2B01G592100 chr1A 86.316 95 10 3 8 101 575655628 575655536 1.960000e-17 100.0
16 TraesCS2B01G592100 chr1A 79.845 129 24 2 153 279 442127537 442127409 3.280000e-15 93.5
17 TraesCS2B01G592100 chr1A 83.133 83 12 2 195 276 508189502 508189583 1.190000e-09 75.0
18 TraesCS2B01G592100 chr3D 80.142 141 21 6 2 136 29888726 29888865 7.050000e-17 99.0
19 TraesCS2B01G592100 chr3D 96.970 33 0 1 140 172 535498858 535498827 2.000000e-03 54.7
20 TraesCS2B01G592100 chr3B 85.000 100 9 6 20 115 34467950 34468047 2.540000e-16 97.1
21 TraesCS2B01G592100 chr3B 85.000 100 9 6 20 115 34523108 34523205 2.540000e-16 97.1
22 TraesCS2B01G592100 chr3A 84.694 98 13 2 5 101 1772179 1772275 2.540000e-16 97.1
23 TraesCS2B01G592100 chr3A 82.927 82 14 0 194 275 1772449 1772530 1.190000e-09 75.0
24 TraesCS2B01G592100 chr5D 84.158 101 11 5 4 102 482401391 482401488 3.280000e-15 93.5
25 TraesCS2B01G592100 chr7A 89.231 65 7 0 179 243 507437714 507437778 7.100000e-12 82.4
26 TraesCS2B01G592100 chr7A 80.000 105 18 3 174 276 466240469 466240572 1.190000e-09 75.0
27 TraesCS2B01G592100 chr7A 76.596 141 20 4 152 279 653651194 653651054 7.150000e-07 65.8
28 TraesCS2B01G592100 chr7D 84.524 84 6 3 2974 3051 20073286 20073368 3.300000e-10 76.8
29 TraesCS2B01G592100 chr7D 84.615 65 10 0 196 260 394948282 394948346 7.150000e-07 65.8
30 TraesCS2B01G592100 chr4A 80.808 99 17 2 179 276 47626075 47626172 3.300000e-10 76.8
31 TraesCS2B01G592100 chr1D 94.595 37 0 1 145 179 467416514 467416550 4.300000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G592100 chr2B 777328899 777331987 3088 False 5705.000000 5705 100.000000 1 3089 1 chr2B.!!$F1 3088
1 TraesCS2B01G592100 chr2D 634295263 634297951 2688 False 3790.000000 3790 92.195000 396 3089 1 chr2D.!!$F1 2693
2 TraesCS2B01G592100 chr2A 779215270 779217933 2663 True 1163.666667 2736 90.866667 417 3089 3 chr2A.!!$R1 2672
3 TraesCS2B01G592100 chr6D 220935932 220937165 1233 True 240.500000 364 90.200000 1154 1897 2 chr6D.!!$R2 743
4 TraesCS2B01G592100 chr6B 396434949 396436180 1231 True 240.500000 364 90.200000 1154 1897 2 chr6B.!!$R1 743

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
622 678 0.030705 CATCCCTTCCCTCCCTCTCA 60.031 60.0 0.0 0.0 0.0 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2476 3084 0.039437 TGCAAGACGAGACGAAGGAC 60.039 55.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 6.879188 GCGAGAGGCATATAATTACTTCTC 57.121 41.667 0.00 3.97 42.87 2.87
41 42 5.513495 GCGAGAGGCATATAATTACTTCTCG 59.487 44.000 21.18 21.18 43.89 4.04
42 43 6.613233 CGAGAGGCATATAATTACTTCTCGT 58.387 40.000 18.96 0.29 38.62 4.18
43 44 6.524933 CGAGAGGCATATAATTACTTCTCGTG 59.475 42.308 18.96 2.50 38.62 4.35
44 45 6.692486 AGAGGCATATAATTACTTCTCGTGG 58.308 40.000 0.00 0.00 0.00 4.94
45 46 6.493802 AGAGGCATATAATTACTTCTCGTGGA 59.506 38.462 0.00 0.00 0.00 4.02
46 47 6.692486 AGGCATATAATTACTTCTCGTGGAG 58.308 40.000 0.00 0.00 0.00 3.86
47 48 5.869888 GGCATATAATTACTTCTCGTGGAGG 59.130 44.000 0.00 0.00 0.00 4.30
48 49 5.348997 GCATATAATTACTTCTCGTGGAGGC 59.651 44.000 0.00 0.00 0.00 4.70
49 50 6.455647 CATATAATTACTTCTCGTGGAGGCA 58.544 40.000 0.00 0.00 0.00 4.75
50 51 2.674796 ATTACTTCTCGTGGAGGCAC 57.325 50.000 0.00 0.00 0.00 5.01
57 58 3.177600 CGTGGAGGCACGGATTTG 58.822 61.111 0.00 0.00 44.01 2.32
58 59 2.877691 GTGGAGGCACGGATTTGC 59.122 61.111 0.00 0.00 42.18 3.68
59 60 1.675641 GTGGAGGCACGGATTTGCT 60.676 57.895 0.00 0.00 42.56 3.91
60 61 1.074775 TGGAGGCACGGATTTGCTT 59.925 52.632 0.00 0.00 42.56 3.91
61 62 0.960364 TGGAGGCACGGATTTGCTTC 60.960 55.000 0.00 0.00 45.47 3.86
62 63 1.803289 GAGGCACGGATTTGCTTCC 59.197 57.895 0.00 0.00 41.54 3.46
68 69 4.201951 GGATTTGCTTCCGCGAGA 57.798 55.556 8.23 0.00 39.65 4.04
69 70 2.466867 GGATTTGCTTCCGCGAGAA 58.533 52.632 8.23 8.88 39.65 2.87
75 76 3.403277 CTTCCGCGAGAAGCATGG 58.597 61.111 19.55 2.89 45.38 3.66
76 77 1.153568 CTTCCGCGAGAAGCATGGA 60.154 57.895 19.55 0.00 45.38 3.41
77 78 0.531532 CTTCCGCGAGAAGCATGGAT 60.532 55.000 19.55 0.00 45.38 3.41
78 79 2.725774 CTTCCGCGAGAAGCATGGATG 61.726 57.143 19.55 0.82 45.38 3.51
82 83 2.020131 CGAGAAGCATGGATGTGCC 58.980 57.895 0.00 0.00 46.19 5.01
83 84 0.463295 CGAGAAGCATGGATGTGCCT 60.463 55.000 0.00 0.00 46.19 4.75
84 85 1.307097 GAGAAGCATGGATGTGCCTC 58.693 55.000 0.00 0.00 46.19 4.70
85 86 0.917533 AGAAGCATGGATGTGCCTCT 59.082 50.000 0.00 0.00 46.19 3.69
86 87 1.284198 AGAAGCATGGATGTGCCTCTT 59.716 47.619 0.00 0.00 41.80 2.85
87 88 2.097825 GAAGCATGGATGTGCCTCTTT 58.902 47.619 0.00 0.00 46.19 2.52
88 89 3.054139 AGAAGCATGGATGTGCCTCTTTA 60.054 43.478 0.00 0.00 41.80 1.85
89 90 3.370840 AGCATGGATGTGCCTCTTTAA 57.629 42.857 0.00 0.00 46.19 1.52
90 91 3.700538 AGCATGGATGTGCCTCTTTAAA 58.299 40.909 0.00 0.00 46.19 1.52
91 92 4.088634 AGCATGGATGTGCCTCTTTAAAA 58.911 39.130 0.00 0.00 46.19 1.52
92 93 4.159135 AGCATGGATGTGCCTCTTTAAAAG 59.841 41.667 0.00 0.00 46.19 2.27
93 94 4.158394 GCATGGATGTGCCTCTTTAAAAGA 59.842 41.667 0.00 0.00 39.18 2.52
94 95 5.336690 GCATGGATGTGCCTCTTTAAAAGAA 60.337 40.000 0.00 0.00 39.18 2.52
95 96 5.964958 TGGATGTGCCTCTTTAAAAGAAG 57.035 39.130 0.00 0.00 37.02 2.85
96 97 5.630121 TGGATGTGCCTCTTTAAAAGAAGA 58.370 37.500 0.00 0.00 37.02 2.87
97 98 6.068010 TGGATGTGCCTCTTTAAAAGAAGAA 58.932 36.000 0.00 0.00 37.02 2.52
98 99 6.549364 TGGATGTGCCTCTTTAAAAGAAGAAA 59.451 34.615 0.00 0.00 37.02 2.52
99 100 7.069331 TGGATGTGCCTCTTTAAAAGAAGAAAA 59.931 33.333 0.00 0.00 37.02 2.29
100 101 7.926018 GGATGTGCCTCTTTAAAAGAAGAAAAA 59.074 33.333 0.00 0.00 37.02 1.94
101 102 9.481340 GATGTGCCTCTTTAAAAGAAGAAAAAT 57.519 29.630 0.00 0.00 37.02 1.82
129 130 3.540211 CTTCTGTGGAAGGCACGAT 57.460 52.632 0.00 0.00 43.68 3.73
130 131 1.813513 CTTCTGTGGAAGGCACGATT 58.186 50.000 0.00 0.00 43.68 3.34
131 132 2.154462 CTTCTGTGGAAGGCACGATTT 58.846 47.619 0.00 0.00 43.68 2.17
132 133 1.522668 TCTGTGGAAGGCACGATTTG 58.477 50.000 0.00 0.00 0.00 2.32
143 144 2.542766 CACGATTTGCTTATGCGGTT 57.457 45.000 0.00 0.00 43.34 4.44
144 145 2.176369 CACGATTTGCTTATGCGGTTG 58.824 47.619 0.00 0.00 43.34 3.77
145 146 1.810151 ACGATTTGCTTATGCGGTTGT 59.190 42.857 0.00 0.00 43.34 3.32
146 147 2.176369 CGATTTGCTTATGCGGTTGTG 58.824 47.619 0.00 0.00 43.34 3.33
147 148 1.919918 GATTTGCTTATGCGGTTGTGC 59.080 47.619 0.00 0.00 43.34 4.57
148 149 0.038709 TTTGCTTATGCGGTTGTGCC 60.039 50.000 0.00 0.00 43.34 5.01
149 150 0.893270 TTGCTTATGCGGTTGTGCCT 60.893 50.000 0.00 0.00 43.34 4.75
150 151 1.305219 TGCTTATGCGGTTGTGCCTC 61.305 55.000 0.00 0.00 43.34 4.70
151 152 1.026718 GCTTATGCGGTTGTGCCTCT 61.027 55.000 0.00 0.00 34.25 3.69
152 153 1.009829 CTTATGCGGTTGTGCCTCTC 58.990 55.000 0.00 0.00 34.25 3.20
153 154 0.739462 TTATGCGGTTGTGCCTCTCG 60.739 55.000 0.00 0.00 34.25 4.04
154 155 2.572095 TATGCGGTTGTGCCTCTCGG 62.572 60.000 0.00 0.00 34.25 4.63
155 156 4.373116 GCGGTTGTGCCTCTCGGA 62.373 66.667 0.00 0.00 34.25 4.55
156 157 2.342279 CGGTTGTGCCTCTCGGAA 59.658 61.111 0.00 0.00 34.25 4.30
157 158 1.301401 CGGTTGTGCCTCTCGGAAA 60.301 57.895 0.00 0.00 34.25 3.13
158 159 1.291877 CGGTTGTGCCTCTCGGAAAG 61.292 60.000 0.00 0.00 34.25 2.62
159 160 0.955919 GGTTGTGCCTCTCGGAAAGG 60.956 60.000 0.00 0.00 36.95 3.11
160 161 0.955919 GTTGTGCCTCTCGGAAAGGG 60.956 60.000 0.00 0.00 34.26 3.95
161 162 1.125093 TTGTGCCTCTCGGAAAGGGA 61.125 55.000 0.00 0.00 34.26 4.20
162 163 1.125093 TGTGCCTCTCGGAAAGGGAA 61.125 55.000 0.00 0.00 35.86 3.97
163 164 0.036306 GTGCCTCTCGGAAAGGGAAA 59.964 55.000 0.00 0.00 35.86 3.13
164 165 0.768622 TGCCTCTCGGAAAGGGAAAA 59.231 50.000 0.00 0.00 34.26 2.29
165 166 1.144093 TGCCTCTCGGAAAGGGAAAAA 59.856 47.619 0.00 0.00 34.26 1.94
183 184 1.541379 AAACATACTCCCGGTTTGGC 58.459 50.000 0.00 0.00 33.78 4.52
184 185 0.696501 AACATACTCCCGGTTTGGCT 59.303 50.000 0.00 0.00 35.87 4.75
185 186 0.696501 ACATACTCCCGGTTTGGCTT 59.303 50.000 0.00 0.00 35.87 4.35
186 187 1.074889 ACATACTCCCGGTTTGGCTTT 59.925 47.619 0.00 0.00 35.87 3.51
187 188 2.167662 CATACTCCCGGTTTGGCTTTT 58.832 47.619 0.00 0.00 35.87 2.27
188 189 2.368311 TACTCCCGGTTTGGCTTTTT 57.632 45.000 0.00 0.00 35.87 1.94
189 190 1.037493 ACTCCCGGTTTGGCTTTTTC 58.963 50.000 0.00 0.00 35.87 2.29
190 191 0.039527 CTCCCGGTTTGGCTTTTTCG 60.040 55.000 0.00 0.00 35.87 3.46
191 192 0.465824 TCCCGGTTTGGCTTTTTCGA 60.466 50.000 0.00 0.00 35.87 3.71
192 193 0.386113 CCCGGTTTGGCTTTTTCGAA 59.614 50.000 0.00 0.00 35.87 3.71
193 194 1.202428 CCCGGTTTGGCTTTTTCGAAA 60.202 47.619 6.47 6.47 35.87 3.46
194 195 2.541556 CCGGTTTGGCTTTTTCGAAAA 58.458 42.857 19.08 19.08 0.00 2.29
195 196 2.930682 CCGGTTTGGCTTTTTCGAAAAA 59.069 40.909 28.86 28.86 36.53 1.94
241 242 9.823647 TTAACATGAGATCTAGTTTTGAGGATC 57.176 33.333 11.50 0.00 35.98 3.36
242 243 7.673641 ACATGAGATCTAGTTTTGAGGATCT 57.326 36.000 0.00 0.00 44.88 2.75
247 248 7.833285 AGATCTAGTTTTGAGGATCTCTACC 57.167 40.000 0.00 0.00 40.25 3.18
248 249 6.780522 AGATCTAGTTTTGAGGATCTCTACCC 59.219 42.308 0.00 0.00 40.25 3.69
249 250 4.888239 TCTAGTTTTGAGGATCTCTACCCG 59.112 45.833 0.00 0.00 34.92 5.28
250 251 3.709587 AGTTTTGAGGATCTCTACCCGA 58.290 45.455 0.00 0.00 34.92 5.14
251 252 3.702045 AGTTTTGAGGATCTCTACCCGAG 59.298 47.826 0.00 0.00 41.30 4.63
252 253 2.366640 TTGAGGATCTCTACCCGAGG 57.633 55.000 0.00 0.00 40.30 4.63
253 254 1.519498 TGAGGATCTCTACCCGAGGA 58.481 55.000 0.00 0.00 40.30 3.71
254 255 1.850998 TGAGGATCTCTACCCGAGGAA 59.149 52.381 0.00 0.00 40.30 3.36
255 256 2.447429 TGAGGATCTCTACCCGAGGAAT 59.553 50.000 0.00 0.00 40.30 3.01
256 257 3.086282 GAGGATCTCTACCCGAGGAATC 58.914 54.545 0.00 0.00 40.30 2.52
257 258 2.172679 GGATCTCTACCCGAGGAATCC 58.827 57.143 0.00 0.00 40.30 3.01
258 259 2.491086 GGATCTCTACCCGAGGAATCCA 60.491 54.545 0.61 0.00 40.43 3.41
259 260 2.840640 TCTCTACCCGAGGAATCCAA 57.159 50.000 0.61 0.00 40.30 3.53
260 261 3.110293 TCTCTACCCGAGGAATCCAAA 57.890 47.619 0.61 0.00 40.30 3.28
261 262 3.446968 TCTCTACCCGAGGAATCCAAAA 58.553 45.455 0.61 0.00 40.30 2.44
262 263 3.451178 TCTCTACCCGAGGAATCCAAAAG 59.549 47.826 0.61 0.00 40.30 2.27
263 264 2.093128 TCTACCCGAGGAATCCAAAAGC 60.093 50.000 0.61 0.00 0.00 3.51
264 265 0.676782 ACCCGAGGAATCCAAAAGCG 60.677 55.000 0.61 0.00 0.00 4.68
265 266 0.392461 CCCGAGGAATCCAAAAGCGA 60.392 55.000 0.61 0.00 0.00 4.93
266 267 1.448985 CCGAGGAATCCAAAAGCGAA 58.551 50.000 0.61 0.00 0.00 4.70
267 268 1.810151 CCGAGGAATCCAAAAGCGAAA 59.190 47.619 0.61 0.00 0.00 3.46
268 269 2.227865 CCGAGGAATCCAAAAGCGAAAA 59.772 45.455 0.61 0.00 0.00 2.29
269 270 3.234386 CGAGGAATCCAAAAGCGAAAAC 58.766 45.455 0.61 0.00 0.00 2.43
270 271 3.234386 GAGGAATCCAAAAGCGAAAACG 58.766 45.455 0.61 0.00 0.00 3.60
271 272 2.030274 AGGAATCCAAAAGCGAAAACGG 60.030 45.455 0.61 0.00 0.00 4.44
272 273 2.287970 GGAATCCAAAAGCGAAAACGGT 60.288 45.455 0.00 0.00 0.00 4.83
273 274 3.377439 GAATCCAAAAGCGAAAACGGTT 58.623 40.909 0.00 0.00 0.00 4.44
274 275 2.478547 TCCAAAAGCGAAAACGGTTC 57.521 45.000 7.45 0.00 0.00 3.62
275 276 1.117234 CCAAAAGCGAAAACGGTTCG 58.883 50.000 16.46 16.46 44.06 3.95
276 277 1.268133 CCAAAAGCGAAAACGGTTCGA 60.268 47.619 22.75 0.00 43.97 3.71
277 278 2.034076 CAAAAGCGAAAACGGTTCGAG 58.966 47.619 22.75 3.29 43.97 4.04
278 279 1.574134 AAAGCGAAAACGGTTCGAGA 58.426 45.000 22.75 0.00 43.97 4.04
279 280 1.137513 AAGCGAAAACGGTTCGAGAG 58.862 50.000 22.75 0.00 43.97 3.20
280 281 0.313043 AGCGAAAACGGTTCGAGAGA 59.687 50.000 22.75 0.00 43.97 3.10
281 282 0.708918 GCGAAAACGGTTCGAGAGAG 59.291 55.000 22.75 0.00 43.97 3.20
282 283 1.665161 GCGAAAACGGTTCGAGAGAGA 60.665 52.381 22.75 0.00 43.97 3.10
283 284 2.658285 CGAAAACGGTTCGAGAGAGAA 58.342 47.619 15.92 0.00 43.97 2.87
284 285 3.047796 CGAAAACGGTTCGAGAGAGAAA 58.952 45.455 15.92 0.00 43.97 2.52
285 286 3.488310 CGAAAACGGTTCGAGAGAGAAAA 59.512 43.478 15.92 0.00 43.97 2.29
286 287 4.150098 CGAAAACGGTTCGAGAGAGAAAAT 59.850 41.667 15.92 0.00 43.97 1.82
287 288 4.992381 AAACGGTTCGAGAGAGAAAATG 57.008 40.909 0.00 0.00 43.69 2.32
288 289 3.662247 ACGGTTCGAGAGAGAAAATGT 57.338 42.857 0.00 0.00 43.69 2.71
289 290 3.991367 ACGGTTCGAGAGAGAAAATGTT 58.009 40.909 0.00 0.00 43.69 2.71
290 291 4.377897 ACGGTTCGAGAGAGAAAATGTTT 58.622 39.130 0.00 0.00 43.69 2.83
291 292 4.448060 ACGGTTCGAGAGAGAAAATGTTTC 59.552 41.667 0.00 0.00 43.69 2.78
292 293 4.433022 CGGTTCGAGAGAGAAAATGTTTCG 60.433 45.833 0.00 0.00 43.69 3.46
293 294 4.684703 GGTTCGAGAGAGAAAATGTTTCGA 59.315 41.667 0.00 0.00 43.69 3.71
294 295 5.176958 GGTTCGAGAGAGAAAATGTTTCGAA 59.823 40.000 0.00 0.00 43.69 3.71
295 296 6.128526 GGTTCGAGAGAGAAAATGTTTCGAAT 60.129 38.462 0.00 0.00 44.18 3.34
296 297 7.063074 GGTTCGAGAGAGAAAATGTTTCGAATA 59.937 37.037 0.00 0.00 44.18 1.75
297 298 8.433126 GTTCGAGAGAGAAAATGTTTCGAATAA 58.567 33.333 0.00 0.00 44.18 1.40
298 299 8.528917 TCGAGAGAGAAAATGTTTCGAATAAA 57.471 30.769 0.00 0.00 33.31 1.40
299 300 8.433126 TCGAGAGAGAAAATGTTTCGAATAAAC 58.567 33.333 0.00 0.00 33.31 2.01
300 301 8.221100 CGAGAGAGAAAATGTTTCGAATAAACA 58.779 33.333 0.00 0.32 43.33 2.83
301 302 9.535270 GAGAGAGAAAATGTTTCGAATAAACAG 57.465 33.333 0.00 0.00 42.57 3.16
302 303 9.273016 AGAGAGAAAATGTTTCGAATAAACAGA 57.727 29.630 0.00 0.00 42.57 3.41
304 305 9.831737 AGAGAAAATGTTTCGAATAAACAGATG 57.168 29.630 0.00 0.00 42.57 2.90
305 306 9.612620 GAGAAAATGTTTCGAATAAACAGATGT 57.387 29.630 0.00 0.00 42.57 3.06
341 342 4.980805 GGTTGCGACCAGTGGCGA 62.981 66.667 24.17 10.57 45.77 5.54
342 343 3.712881 GTTGCGACCAGTGGCGAC 61.713 66.667 24.17 16.85 40.55 5.19
343 344 4.980805 TTGCGACCAGTGGCGACC 62.981 66.667 24.17 11.59 37.10 4.79
346 347 4.003788 CGACCAGTGGCGACCCTT 62.004 66.667 17.68 0.00 0.00 3.95
347 348 2.358737 GACCAGTGGCGACCCTTG 60.359 66.667 9.78 0.00 0.00 3.61
348 349 3.168528 ACCAGTGGCGACCCTTGT 61.169 61.111 9.78 0.00 0.00 3.16
349 350 2.358737 CCAGTGGCGACCCTTGTC 60.359 66.667 0.00 0.00 38.18 3.18
350 351 2.425592 CAGTGGCGACCCTTGTCA 59.574 61.111 0.00 0.00 41.85 3.58
351 352 1.961277 CAGTGGCGACCCTTGTCAC 60.961 63.158 0.00 0.00 41.85 3.67
352 353 2.110213 GTGGCGACCCTTGTCACA 59.890 61.111 0.00 0.00 41.85 3.58
353 354 1.525077 GTGGCGACCCTTGTCACAA 60.525 57.895 0.00 0.00 41.85 3.33
354 355 1.525077 TGGCGACCCTTGTCACAAC 60.525 57.895 0.00 0.00 41.85 3.32
355 356 2.258726 GGCGACCCTTGTCACAACC 61.259 63.158 0.00 0.00 41.85 3.77
356 357 1.227853 GCGACCCTTGTCACAACCT 60.228 57.895 0.00 0.00 41.85 3.50
357 358 0.034337 GCGACCCTTGTCACAACCTA 59.966 55.000 0.00 0.00 41.85 3.08
358 359 1.939838 GCGACCCTTGTCACAACCTAG 60.940 57.143 0.00 0.00 41.85 3.02
359 360 1.809684 GACCCTTGTCACAACCTAGC 58.190 55.000 0.00 0.00 41.37 3.42
360 361 1.348036 GACCCTTGTCACAACCTAGCT 59.652 52.381 0.00 0.00 41.37 3.32
361 362 2.565834 GACCCTTGTCACAACCTAGCTA 59.434 50.000 0.00 0.00 41.37 3.32
362 363 2.567615 ACCCTTGTCACAACCTAGCTAG 59.432 50.000 14.20 14.20 0.00 3.42
363 364 2.567615 CCCTTGTCACAACCTAGCTAGT 59.432 50.000 19.31 5.12 0.00 2.57
364 365 3.589988 CCTTGTCACAACCTAGCTAGTG 58.410 50.000 19.31 13.95 0.00 2.74
365 366 3.589988 CTTGTCACAACCTAGCTAGTGG 58.410 50.000 19.31 8.69 33.01 4.00
366 367 1.899814 TGTCACAACCTAGCTAGTGGG 59.100 52.381 19.31 12.98 33.01 4.61
367 368 1.207329 GTCACAACCTAGCTAGTGGGG 59.793 57.143 19.31 9.38 33.01 4.96
368 369 1.078159 TCACAACCTAGCTAGTGGGGA 59.922 52.381 19.31 11.48 33.01 4.81
369 370 1.482593 CACAACCTAGCTAGTGGGGAG 59.517 57.143 19.31 5.52 0.00 4.30
370 371 1.123928 CAACCTAGCTAGTGGGGAGG 58.876 60.000 19.31 7.45 0.00 4.30
371 372 1.016415 AACCTAGCTAGTGGGGAGGA 58.984 55.000 19.31 0.00 0.00 3.71
372 373 0.558712 ACCTAGCTAGTGGGGAGGAG 59.441 60.000 19.31 3.41 0.00 3.69
373 374 0.558712 CCTAGCTAGTGGGGAGGAGT 59.441 60.000 19.31 0.00 0.00 3.85
374 375 1.698506 CTAGCTAGTGGGGAGGAGTG 58.301 60.000 12.92 0.00 0.00 3.51
375 376 1.215673 CTAGCTAGTGGGGAGGAGTGA 59.784 57.143 12.92 0.00 0.00 3.41
376 377 0.639392 AGCTAGTGGGGAGGAGTGAT 59.361 55.000 0.00 0.00 0.00 3.06
377 378 1.044611 GCTAGTGGGGAGGAGTGATC 58.955 60.000 0.00 0.00 0.00 2.92
378 379 1.412361 GCTAGTGGGGAGGAGTGATCT 60.412 57.143 0.00 0.00 0.00 2.75
379 380 2.957312 GCTAGTGGGGAGGAGTGATCTT 60.957 54.545 0.00 0.00 0.00 2.40
380 381 2.350863 AGTGGGGAGGAGTGATCTTT 57.649 50.000 0.00 0.00 0.00 2.52
381 382 1.912043 AGTGGGGAGGAGTGATCTTTG 59.088 52.381 0.00 0.00 0.00 2.77
382 383 0.620556 TGGGGAGGAGTGATCTTTGC 59.379 55.000 0.00 0.00 0.00 3.68
383 384 0.620556 GGGGAGGAGTGATCTTTGCA 59.379 55.000 0.00 0.00 0.00 4.08
384 385 1.004745 GGGGAGGAGTGATCTTTGCAA 59.995 52.381 0.00 0.00 0.00 4.08
385 386 2.555227 GGGGAGGAGTGATCTTTGCAAA 60.555 50.000 12.14 12.14 0.00 3.68
386 387 3.157087 GGGAGGAGTGATCTTTGCAAAA 58.843 45.455 13.84 5.01 0.00 2.44
387 388 3.573967 GGGAGGAGTGATCTTTGCAAAAA 59.426 43.478 13.84 0.00 0.00 1.94
388 389 4.321527 GGGAGGAGTGATCTTTGCAAAAAG 60.322 45.833 13.84 2.24 0.00 2.27
389 390 4.279420 GGAGGAGTGATCTTTGCAAAAAGT 59.721 41.667 13.84 1.81 0.00 2.66
390 391 5.444663 AGGAGTGATCTTTGCAAAAAGTC 57.555 39.130 13.84 11.42 0.00 3.01
391 392 4.279420 AGGAGTGATCTTTGCAAAAAGTCC 59.721 41.667 13.84 17.86 0.00 3.85
392 393 4.279420 GGAGTGATCTTTGCAAAAAGTCCT 59.721 41.667 13.84 6.68 0.00 3.85
393 394 5.444663 AGTGATCTTTGCAAAAAGTCCTC 57.555 39.130 13.84 4.70 0.00 3.71
394 395 4.023707 AGTGATCTTTGCAAAAAGTCCTCG 60.024 41.667 13.84 0.00 0.00 4.63
404 405 7.966246 TGCAAAAAGTCCTCGTTAATTAGTA 57.034 32.000 0.00 0.00 0.00 1.82
451 452 7.551585 CCATATTTTTGTTTGTGGGCTGTATA 58.448 34.615 0.00 0.00 0.00 1.47
458 460 5.754782 TGTTTGTGGGCTGTATATCTTGAT 58.245 37.500 0.00 0.00 0.00 2.57
459 461 6.186957 TGTTTGTGGGCTGTATATCTTGATT 58.813 36.000 0.00 0.00 0.00 2.57
507 509 2.285220 CGATCACGTTGGATTGCCTAAG 59.715 50.000 0.00 0.00 32.93 2.18
535 538 2.411748 TGATCACGATGAAACGCACTTC 59.588 45.455 0.00 0.00 36.70 3.01
561 617 6.662616 ACAAAAACATGAGTCGAGAAGATTG 58.337 36.000 0.00 0.00 0.00 2.67
620 676 0.267356 CTCATCCCTTCCCTCCCTCT 59.733 60.000 0.00 0.00 0.00 3.69
622 678 0.030705 CATCCCTTCCCTCCCTCTCA 60.031 60.000 0.00 0.00 0.00 3.27
623 679 0.955752 ATCCCTTCCCTCCCTCTCAT 59.044 55.000 0.00 0.00 0.00 2.90
624 680 0.266152 TCCCTTCCCTCCCTCTCATC 59.734 60.000 0.00 0.00 0.00 2.92
625 681 1.118356 CCCTTCCCTCCCTCTCATCG 61.118 65.000 0.00 0.00 0.00 3.84
626 682 0.397816 CCTTCCCTCCCTCTCATCGT 60.398 60.000 0.00 0.00 0.00 3.73
627 683 1.036707 CTTCCCTCCCTCTCATCGTC 58.963 60.000 0.00 0.00 0.00 4.20
671 746 2.956964 CACTCGCCGCGAATCTCC 60.957 66.667 17.53 0.00 34.74 3.71
672 747 3.141488 ACTCGCCGCGAATCTCCT 61.141 61.111 17.53 0.00 34.74 3.69
673 748 2.105128 CTCGCCGCGAATCTCCTT 59.895 61.111 17.53 0.00 34.74 3.36
702 777 1.219522 CGTTCCTCACCGTCGCTTTT 61.220 55.000 0.00 0.00 0.00 2.27
705 780 1.301401 CCTCACCGTCGCTTTTCCA 60.301 57.895 0.00 0.00 0.00 3.53
714 789 1.151777 TCGCTTTTCCATCGATCCGC 61.152 55.000 0.00 0.00 0.00 5.54
741 818 4.144297 CCTCCTCAATTTCACTGTTTCCA 58.856 43.478 0.00 0.00 0.00 3.53
751 828 4.057406 TCACTGTTTCCATGGCAAAAAG 57.943 40.909 18.15 18.15 0.00 2.27
752 829 3.132925 CACTGTTTCCATGGCAAAAAGG 58.867 45.455 21.30 11.72 0.00 3.11
763 840 3.526534 TGGCAAAAAGGGAACGAAAAAG 58.473 40.909 0.00 0.00 0.00 2.27
765 842 4.185394 GGCAAAAAGGGAACGAAAAAGAA 58.815 39.130 0.00 0.00 0.00 2.52
766 843 4.632251 GGCAAAAAGGGAACGAAAAAGAAA 59.368 37.500 0.00 0.00 0.00 2.52
885 974 5.690409 GCGTTTATTCTATCCAGTTCGATCA 59.310 40.000 0.00 0.00 0.00 2.92
904 993 3.013921 TCAAGTATGTGGAAATTCGCCC 58.986 45.455 0.00 0.00 0.00 6.13
1275 1364 2.664851 TCCGTGCGCAGGAACAAG 60.665 61.111 30.22 13.70 34.33 3.16
1428 1517 6.239686 CCAGATATGATGATGTGAACCTGGTA 60.240 42.308 0.00 0.00 34.40 3.25
1431 1520 3.595173 TGATGATGTGAACCTGGTAACG 58.405 45.455 0.00 0.00 42.51 3.18
1497 1768 2.432628 GTGAAGGGCGTCGTGGAG 60.433 66.667 0.00 0.00 0.00 3.86
1620 1891 1.667724 GCCAACATCATGAGGAAGACG 59.332 52.381 15.42 0.00 0.00 4.18
1629 1900 3.066233 GAGGAAGACGGACGGGCTC 62.066 68.421 0.00 0.00 0.00 4.70
1737 2241 1.375523 CAAGGACCCTGGCACGTAC 60.376 63.158 0.00 0.00 0.00 3.67
1770 2274 2.493030 CCGAACCTGTACGGCGAT 59.507 61.111 16.62 0.00 42.55 4.58
1902 2482 2.365617 TGATATCTCCGGCAAGAACCTC 59.634 50.000 3.98 0.00 0.00 3.85
2096 2684 2.708051 CGGCCATATCTGATTGAGCAT 58.292 47.619 2.24 0.00 0.00 3.79
2097 2685 2.418976 CGGCCATATCTGATTGAGCATG 59.581 50.000 2.24 0.00 0.00 4.06
2098 2686 2.163815 GGCCATATCTGATTGAGCATGC 59.836 50.000 10.51 10.51 0.00 4.06
2099 2687 2.817844 GCCATATCTGATTGAGCATGCA 59.182 45.455 21.98 0.00 0.00 3.96
2108 2696 0.321919 TTGAGCATGCACCACCTCTC 60.322 55.000 21.98 6.41 0.00 3.20
2109 2697 1.196766 TGAGCATGCACCACCTCTCT 61.197 55.000 21.98 0.00 0.00 3.10
2110 2698 0.035630 GAGCATGCACCACCTCTCTT 60.036 55.000 21.98 0.00 0.00 2.85
2118 2706 3.070748 GCACCACCTCTCTTTCTTTCTC 58.929 50.000 0.00 0.00 0.00 2.87
2120 2708 4.745172 GCACCACCTCTCTTTCTTTCTCTT 60.745 45.833 0.00 0.00 0.00 2.85
2122 2710 5.825151 CACCACCTCTCTTTCTTTCTCTTTT 59.175 40.000 0.00 0.00 0.00 2.27
2252 2841 6.971726 TGTAGTCAAGGTCGTCCATAATAT 57.028 37.500 0.51 0.00 35.89 1.28
2319 2908 6.934645 AGTTGTTGAAGAACTGGATTTCGATA 59.065 34.615 6.94 0.00 32.30 2.92
2377 2966 1.202806 TGTTGCTGTTCCCCTCTCTTG 60.203 52.381 0.00 0.00 0.00 3.02
2390 2998 3.181461 CCCTCTCTTGAGTGTTGTTGTCT 60.181 47.826 0.00 0.00 38.61 3.41
2400 3008 2.163412 GTGTTGTTGTCTTGTCTGGCAA 59.837 45.455 0.00 0.00 35.50 4.52
2424 3032 2.467826 GCGGTCAGATCAAGCCTGC 61.468 63.158 0.00 0.00 0.00 4.85
2425 3033 1.220206 CGGTCAGATCAAGCCTGCT 59.780 57.895 0.00 0.00 0.00 4.24
2456 3064 2.181975 CCCTCCTACGTTTTCCCAGTA 58.818 52.381 0.00 0.00 0.00 2.74
2469 3077 3.163616 TCCCAGTAAATCACCAAACCC 57.836 47.619 0.00 0.00 0.00 4.11
2473 3081 5.015817 TCCCAGTAAATCACCAAACCCTATT 59.984 40.000 0.00 0.00 0.00 1.73
2476 3084 6.095440 CCAGTAAATCACCAAACCCTATTCTG 59.905 42.308 0.00 0.00 0.00 3.02
2504 3112 3.585862 GTCTCGTCTTGCATCCACTTAA 58.414 45.455 0.00 0.00 0.00 1.85
2549 3157 1.519898 CGTTAGCCGGGCGTATGTT 60.520 57.895 14.39 0.00 0.00 2.71
2551 3159 1.089112 GTTAGCCGGGCGTATGTTTT 58.911 50.000 14.39 0.00 0.00 2.43
2555 3163 1.022451 GCCGGGCGTATGTTTTGAGA 61.022 55.000 1.81 0.00 0.00 3.27
2562 3170 4.464112 GGCGTATGTTTTGAGAACTGAAC 58.536 43.478 0.00 0.00 0.00 3.18
2612 3220 4.255301 ACTCTCTAGTCTGTACTCAACGG 58.745 47.826 0.00 0.00 37.15 4.44
2674 3282 3.620419 ATCAACGGTGGCGGCATCA 62.620 57.895 23.12 2.29 0.00 3.07
2680 3289 1.825191 GGTGGCGGCATCACATGAT 60.825 57.895 18.62 0.00 36.90 2.45
2705 3314 2.573941 TCTGACTGCATCATCGACAG 57.426 50.000 0.00 0.00 36.48 3.51
2711 3320 0.036105 TGCATCATCGACAGCACCTT 60.036 50.000 0.00 0.00 31.05 3.50
2721 3330 3.074412 CGACAGCACCTTTGATAAACCT 58.926 45.455 0.00 0.00 0.00 3.50
2722 3331 3.125316 CGACAGCACCTTTGATAAACCTC 59.875 47.826 0.00 0.00 0.00 3.85
2723 3332 3.421844 ACAGCACCTTTGATAAACCTCC 58.578 45.455 0.00 0.00 0.00 4.30
2734 3343 2.113860 TAAACCTCCTGCAGCATGTC 57.886 50.000 8.66 0.00 39.31 3.06
2810 3424 4.343526 TGAAGCTAGATCAGGATTCAGGAC 59.656 45.833 12.37 0.00 33.77 3.85
2858 3472 4.931914 AGTTTGTAGCCTGGACTCTACTA 58.068 43.478 0.00 0.00 36.88 1.82
2956 3573 6.875726 TCACTCAAGGACTAATTGACAATGAG 59.124 38.462 10.60 10.60 38.14 2.90
2961 3578 9.130661 TCAAGGACTAATTGACAATGAGAAAAA 57.869 29.630 18.03 0.00 31.86 1.94
2962 3579 9.918630 CAAGGACTAATTGACAATGAGAAAAAT 57.081 29.630 18.03 0.00 0.00 1.82
2965 3582 9.508567 GGACTAATTGACAATGAGAAAAATAGC 57.491 33.333 18.03 3.50 0.00 2.97
2966 3583 9.214953 GACTAATTGACAATGAGAAAAATAGCG 57.785 33.333 18.03 0.00 0.00 4.26
2967 3584 8.730680 ACTAATTGACAATGAGAAAAATAGCGT 58.269 29.630 18.03 0.00 0.00 5.07
2968 3585 7.801547 AATTGACAATGAGAAAAATAGCGTG 57.198 32.000 0.34 0.00 0.00 5.34
2969 3586 4.722194 TGACAATGAGAAAAATAGCGTGC 58.278 39.130 0.00 0.00 0.00 5.34
2970 3587 3.747193 ACAATGAGAAAAATAGCGTGCG 58.253 40.909 0.00 0.00 0.00 5.34
3056 3696 6.151648 AGACATTGTACACTGAATTTCATGGG 59.848 38.462 19.02 0.00 0.00 4.00
3064 3704 2.821378 CTGAATTTCATGGGTGAGTGCA 59.179 45.455 0.00 0.00 35.39 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 5.513495 CGAGAAGTAATTATATGCCTCTCGC 59.487 44.000 8.17 0.00 37.23 5.03
18 19 6.524933 CACGAGAAGTAATTATATGCCTCTCG 59.475 42.308 15.13 15.13 45.67 4.04
19 20 6.809196 CCACGAGAAGTAATTATATGCCTCTC 59.191 42.308 0.00 0.00 0.00 3.20
20 21 6.493802 TCCACGAGAAGTAATTATATGCCTCT 59.506 38.462 0.00 0.00 0.00 3.69
21 22 6.688578 TCCACGAGAAGTAATTATATGCCTC 58.311 40.000 0.00 0.00 0.00 4.70
22 23 6.295349 CCTCCACGAGAAGTAATTATATGCCT 60.295 42.308 0.00 0.00 0.00 4.75
23 24 5.869888 CCTCCACGAGAAGTAATTATATGCC 59.130 44.000 0.00 0.00 0.00 4.40
24 25 5.348997 GCCTCCACGAGAAGTAATTATATGC 59.651 44.000 0.00 0.00 0.00 3.14
25 26 6.366332 GTGCCTCCACGAGAAGTAATTATATG 59.634 42.308 0.00 0.00 31.34 1.78
26 27 6.456501 GTGCCTCCACGAGAAGTAATTATAT 58.543 40.000 0.00 0.00 31.34 0.86
27 28 5.839621 GTGCCTCCACGAGAAGTAATTATA 58.160 41.667 0.00 0.00 31.34 0.98
28 29 4.694339 GTGCCTCCACGAGAAGTAATTAT 58.306 43.478 0.00 0.00 31.34 1.28
29 30 4.119442 GTGCCTCCACGAGAAGTAATTA 57.881 45.455 0.00 0.00 31.34 1.40
30 31 2.973945 GTGCCTCCACGAGAAGTAATT 58.026 47.619 0.00 0.00 31.34 1.40
31 32 2.674796 GTGCCTCCACGAGAAGTAAT 57.325 50.000 0.00 0.00 31.34 1.89
41 42 1.244019 AAGCAAATCCGTGCCTCCAC 61.244 55.000 0.00 0.00 46.14 4.02
42 43 0.960364 GAAGCAAATCCGTGCCTCCA 60.960 55.000 0.00 0.00 46.14 3.86
43 44 1.657751 GGAAGCAAATCCGTGCCTCC 61.658 60.000 0.00 0.00 45.43 4.30
44 45 1.803289 GGAAGCAAATCCGTGCCTC 59.197 57.895 0.00 0.00 46.14 4.70
45 46 4.002797 GGAAGCAAATCCGTGCCT 57.997 55.556 0.00 0.00 46.14 4.75
59 60 0.811219 CATCCATGCTTCTCGCGGAA 60.811 55.000 6.13 8.10 43.27 4.30
60 61 1.227350 CATCCATGCTTCTCGCGGA 60.227 57.895 6.13 0.00 43.27 5.54
61 62 1.522355 ACATCCATGCTTCTCGCGG 60.522 57.895 6.13 0.00 43.27 6.46
62 63 1.640069 CACATCCATGCTTCTCGCG 59.360 57.895 0.00 0.00 43.27 5.87
63 64 1.354506 GCACATCCATGCTTCTCGC 59.645 57.895 0.00 0.00 42.62 5.03
64 65 0.463295 AGGCACATCCATGCTTCTCG 60.463 55.000 0.00 0.00 45.38 4.04
65 66 1.307097 GAGGCACATCCATGCTTCTC 58.693 55.000 2.91 0.00 45.58 2.87
66 67 3.491208 GAGGCACATCCATGCTTCT 57.509 52.632 2.91 0.00 45.58 2.85
68 69 2.226962 AAAGAGGCACATCCATGCTT 57.773 45.000 0.00 0.00 45.38 3.91
69 70 3.370840 TTAAAGAGGCACATCCATGCT 57.629 42.857 0.00 0.00 45.38 3.79
70 71 4.158394 TCTTTTAAAGAGGCACATCCATGC 59.842 41.667 2.94 0.00 37.46 4.06
71 72 5.902613 TCTTTTAAAGAGGCACATCCATG 57.097 39.130 2.94 0.00 37.29 3.66
72 73 6.248433 TCTTCTTTTAAAGAGGCACATCCAT 58.752 36.000 11.30 0.00 39.03 3.41
73 74 5.630121 TCTTCTTTTAAAGAGGCACATCCA 58.370 37.500 11.30 0.00 39.03 3.41
74 75 6.575162 TTCTTCTTTTAAAGAGGCACATCC 57.425 37.500 11.30 0.00 39.03 3.51
75 76 8.871686 TTTTTCTTCTTTTAAAGAGGCACATC 57.128 30.769 11.30 0.00 39.03 3.06
112 113 1.879380 CAAATCGTGCCTTCCACAGAA 59.121 47.619 0.00 0.00 44.91 3.02
113 114 1.522668 CAAATCGTGCCTTCCACAGA 58.477 50.000 0.00 0.00 44.91 3.41
124 125 2.176369 CAACCGCATAAGCAAATCGTG 58.824 47.619 0.00 0.00 42.27 4.35
125 126 1.810151 ACAACCGCATAAGCAAATCGT 59.190 42.857 0.00 0.00 42.27 3.73
126 127 2.176369 CACAACCGCATAAGCAAATCG 58.824 47.619 0.00 0.00 42.27 3.34
127 128 1.919918 GCACAACCGCATAAGCAAATC 59.080 47.619 0.00 0.00 42.27 2.17
128 129 1.404047 GGCACAACCGCATAAGCAAAT 60.404 47.619 0.00 0.00 42.27 2.32
129 130 0.038709 GGCACAACCGCATAAGCAAA 60.039 50.000 0.00 0.00 42.27 3.68
130 131 0.893270 AGGCACAACCGCATAAGCAA 60.893 50.000 0.00 0.00 46.52 3.91
131 132 1.303236 AGGCACAACCGCATAAGCA 60.303 52.632 0.00 0.00 46.52 3.91
132 133 1.026718 AGAGGCACAACCGCATAAGC 61.027 55.000 0.00 0.00 46.52 3.09
133 134 1.009829 GAGAGGCACAACCGCATAAG 58.990 55.000 0.00 0.00 46.52 1.73
134 135 0.739462 CGAGAGGCACAACCGCATAA 60.739 55.000 0.00 0.00 46.52 1.90
135 136 1.153647 CGAGAGGCACAACCGCATA 60.154 57.895 0.00 0.00 46.52 3.14
136 137 2.434884 CGAGAGGCACAACCGCAT 60.435 61.111 0.00 0.00 46.52 4.73
162 163 2.297880 GCCAAACCGGGAGTATGTTTTT 59.702 45.455 6.32 0.00 34.06 1.94
163 164 1.890489 GCCAAACCGGGAGTATGTTTT 59.110 47.619 6.32 0.00 34.06 2.43
164 165 1.074889 AGCCAAACCGGGAGTATGTTT 59.925 47.619 6.32 0.00 34.06 2.83
165 166 0.696501 AGCCAAACCGGGAGTATGTT 59.303 50.000 6.32 0.00 34.06 2.71
166 167 0.696501 AAGCCAAACCGGGAGTATGT 59.303 50.000 6.32 0.00 34.06 2.29
167 168 1.834188 AAAGCCAAACCGGGAGTATG 58.166 50.000 6.32 0.00 34.06 2.39
168 169 2.597578 AAAAGCCAAACCGGGAGTAT 57.402 45.000 6.32 0.00 34.06 2.12
169 170 2.232399 GAAAAAGCCAAACCGGGAGTA 58.768 47.619 6.32 0.00 34.06 2.59
170 171 1.037493 GAAAAAGCCAAACCGGGAGT 58.963 50.000 6.32 0.00 34.06 3.85
171 172 0.039527 CGAAAAAGCCAAACCGGGAG 60.040 55.000 6.32 0.00 34.06 4.30
172 173 0.465824 TCGAAAAAGCCAAACCGGGA 60.466 50.000 6.32 0.00 34.06 5.14
173 174 0.386113 TTCGAAAAAGCCAAACCGGG 59.614 50.000 6.32 0.00 34.06 5.73
174 175 2.211353 TTTCGAAAAAGCCAAACCGG 57.789 45.000 8.44 0.00 38.11 5.28
215 216 9.823647 GATCCTCAAAACTAGATCTCATGTTAA 57.176 33.333 0.00 0.00 33.79 2.01
216 217 9.206690 AGATCCTCAAAACTAGATCTCATGTTA 57.793 33.333 0.00 0.00 41.16 2.41
217 218 8.088463 AGATCCTCAAAACTAGATCTCATGTT 57.912 34.615 0.00 0.43 41.16 2.71
218 219 7.673641 AGATCCTCAAAACTAGATCTCATGT 57.326 36.000 0.00 0.00 41.16 3.21
223 224 6.780522 GGGTAGAGATCCTCAAAACTAGATCT 59.219 42.308 0.00 0.00 46.22 2.75
224 225 6.294286 CGGGTAGAGATCCTCAAAACTAGATC 60.294 46.154 0.00 0.00 36.25 2.75
225 226 5.536916 CGGGTAGAGATCCTCAAAACTAGAT 59.463 44.000 0.00 0.00 32.06 1.98
226 227 4.888239 CGGGTAGAGATCCTCAAAACTAGA 59.112 45.833 0.00 0.00 32.06 2.43
227 228 4.888239 TCGGGTAGAGATCCTCAAAACTAG 59.112 45.833 0.00 0.00 32.06 2.57
228 229 4.863548 TCGGGTAGAGATCCTCAAAACTA 58.136 43.478 0.00 0.00 32.06 2.24
229 230 3.709587 TCGGGTAGAGATCCTCAAAACT 58.290 45.455 0.00 0.00 32.06 2.66
241 242 3.798202 CTTTTGGATTCCTCGGGTAGAG 58.202 50.000 3.95 0.00 46.44 2.43
242 243 2.093128 GCTTTTGGATTCCTCGGGTAGA 60.093 50.000 3.95 0.00 0.00 2.59
243 244 2.289565 GCTTTTGGATTCCTCGGGTAG 58.710 52.381 3.95 0.00 0.00 3.18
244 245 1.406341 CGCTTTTGGATTCCTCGGGTA 60.406 52.381 3.95 0.00 0.00 3.69
245 246 0.676782 CGCTTTTGGATTCCTCGGGT 60.677 55.000 3.95 0.00 0.00 5.28
246 247 0.392461 TCGCTTTTGGATTCCTCGGG 60.392 55.000 3.95 0.00 0.00 5.14
247 248 1.448985 TTCGCTTTTGGATTCCTCGG 58.551 50.000 3.95 0.00 0.00 4.63
248 249 3.234386 GTTTTCGCTTTTGGATTCCTCG 58.766 45.455 3.95 0.69 0.00 4.63
249 250 3.234386 CGTTTTCGCTTTTGGATTCCTC 58.766 45.455 3.95 0.00 36.22 3.71
250 251 2.030274 CCGTTTTCGCTTTTGGATTCCT 60.030 45.455 3.95 0.00 42.58 3.36
251 252 2.287970 ACCGTTTTCGCTTTTGGATTCC 60.288 45.455 0.00 0.00 42.58 3.01
252 253 3.007979 ACCGTTTTCGCTTTTGGATTC 57.992 42.857 0.00 0.00 42.58 2.52
253 254 3.377439 GAACCGTTTTCGCTTTTGGATT 58.623 40.909 0.00 0.00 42.58 3.01
254 255 2.603652 CGAACCGTTTTCGCTTTTGGAT 60.604 45.455 3.76 0.00 42.58 3.41
255 256 1.268133 CGAACCGTTTTCGCTTTTGGA 60.268 47.619 3.76 0.00 42.58 3.53
256 257 1.117234 CGAACCGTTTTCGCTTTTGG 58.883 50.000 3.76 0.00 42.58 3.28
257 258 2.034076 CTCGAACCGTTTTCGCTTTTG 58.966 47.619 10.66 0.00 41.30 2.44
258 259 1.935199 TCTCGAACCGTTTTCGCTTTT 59.065 42.857 10.66 0.00 41.30 2.27
259 260 1.525619 CTCTCGAACCGTTTTCGCTTT 59.474 47.619 10.66 0.00 41.30 3.51
260 261 1.137513 CTCTCGAACCGTTTTCGCTT 58.862 50.000 10.66 0.00 41.30 4.68
261 262 0.313043 TCTCTCGAACCGTTTTCGCT 59.687 50.000 10.66 0.00 41.30 4.93
262 263 0.708918 CTCTCTCGAACCGTTTTCGC 59.291 55.000 10.66 0.00 41.30 4.70
263 264 2.327081 TCTCTCTCGAACCGTTTTCG 57.673 50.000 9.51 9.51 42.74 3.46
264 265 5.050295 ACATTTTCTCTCTCGAACCGTTTTC 60.050 40.000 0.00 0.00 0.00 2.29
265 266 4.814771 ACATTTTCTCTCTCGAACCGTTTT 59.185 37.500 0.00 0.00 0.00 2.43
266 267 4.377897 ACATTTTCTCTCTCGAACCGTTT 58.622 39.130 0.00 0.00 0.00 3.60
267 268 3.991367 ACATTTTCTCTCTCGAACCGTT 58.009 40.909 0.00 0.00 0.00 4.44
268 269 3.662247 ACATTTTCTCTCTCGAACCGT 57.338 42.857 0.00 0.00 0.00 4.83
269 270 4.433022 CGAAACATTTTCTCTCTCGAACCG 60.433 45.833 0.00 0.00 0.00 4.44
270 271 4.684703 TCGAAACATTTTCTCTCTCGAACC 59.315 41.667 0.00 0.00 31.50 3.62
271 272 5.824243 TCGAAACATTTTCTCTCTCGAAC 57.176 39.130 0.00 0.00 31.50 3.95
272 273 8.528917 TTATTCGAAACATTTTCTCTCTCGAA 57.471 30.769 0.00 6.48 44.81 3.71
273 274 8.433126 GTTTATTCGAAACATTTTCTCTCTCGA 58.567 33.333 0.00 0.00 32.49 4.04
274 275 8.221100 TGTTTATTCGAAACATTTTCTCTCTCG 58.779 33.333 0.00 0.00 35.45 4.04
275 276 9.535270 CTGTTTATTCGAAACATTTTCTCTCTC 57.465 33.333 0.00 0.00 39.16 3.20
276 277 9.273016 TCTGTTTATTCGAAACATTTTCTCTCT 57.727 29.630 0.00 0.00 39.16 3.10
278 279 9.831737 CATCTGTTTATTCGAAACATTTTCTCT 57.168 29.630 0.00 0.00 39.16 3.10
279 280 9.612620 ACATCTGTTTATTCGAAACATTTTCTC 57.387 29.630 0.00 0.00 39.16 2.87
322 323 3.357079 GCCACTGGTCGCAACCTG 61.357 66.667 0.00 0.00 46.60 4.00
323 324 4.988598 CGCCACTGGTCGCAACCT 62.989 66.667 0.00 0.00 46.60 3.50
324 325 4.980805 TCGCCACTGGTCGCAACC 62.981 66.667 6.94 0.00 46.66 3.77
325 326 3.712881 GTCGCCACTGGTCGCAAC 61.713 66.667 6.94 0.00 0.00 4.17
326 327 4.980805 GGTCGCCACTGGTCGCAA 62.981 66.667 6.94 0.00 0.00 4.85
329 330 4.003788 AAGGGTCGCCACTGGTCG 62.004 66.667 0.00 1.40 0.00 4.79
330 331 2.358737 CAAGGGTCGCCACTGGTC 60.359 66.667 0.00 0.00 0.00 4.02
331 332 3.168528 ACAAGGGTCGCCACTGGT 61.169 61.111 0.00 0.00 0.00 4.00
332 333 2.358737 GACAAGGGTCGCCACTGG 60.359 66.667 0.00 0.00 33.68 4.00
340 341 1.348036 AGCTAGGTTGTGACAAGGGTC 59.652 52.381 0.00 0.00 44.57 4.46
341 342 1.435256 AGCTAGGTTGTGACAAGGGT 58.565 50.000 0.00 0.00 0.00 4.34
342 343 2.567615 ACTAGCTAGGTTGTGACAAGGG 59.432 50.000 24.35 0.00 0.00 3.95
343 344 3.589988 CACTAGCTAGGTTGTGACAAGG 58.410 50.000 25.82 3.30 32.72 3.61
344 345 3.589988 CCACTAGCTAGGTTGTGACAAG 58.410 50.000 29.76 14.46 32.72 3.16
345 346 2.301870 CCCACTAGCTAGGTTGTGACAA 59.698 50.000 29.76 0.00 32.72 3.18
346 347 1.899814 CCCACTAGCTAGGTTGTGACA 59.100 52.381 29.76 0.00 32.72 3.58
347 348 1.207329 CCCCACTAGCTAGGTTGTGAC 59.793 57.143 29.76 0.00 32.72 3.67
348 349 1.078159 TCCCCACTAGCTAGGTTGTGA 59.922 52.381 29.76 13.33 32.72 3.58
349 350 1.482593 CTCCCCACTAGCTAGGTTGTG 59.517 57.143 24.35 23.89 0.00 3.33
350 351 1.622725 CCTCCCCACTAGCTAGGTTGT 60.623 57.143 24.35 0.43 0.00 3.32
351 352 1.123928 CCTCCCCACTAGCTAGGTTG 58.876 60.000 24.35 14.12 0.00 3.77
352 353 1.016415 TCCTCCCCACTAGCTAGGTT 58.984 55.000 24.35 1.58 0.00 3.50
353 354 0.558712 CTCCTCCCCACTAGCTAGGT 59.441 60.000 24.35 7.77 0.00 3.08
354 355 0.558712 ACTCCTCCCCACTAGCTAGG 59.441 60.000 24.35 13.01 0.00 3.02
355 356 1.215673 TCACTCCTCCCCACTAGCTAG 59.784 57.143 19.44 19.44 0.00 3.42
356 357 1.305886 TCACTCCTCCCCACTAGCTA 58.694 55.000 0.00 0.00 0.00 3.32
357 358 0.639392 ATCACTCCTCCCCACTAGCT 59.361 55.000 0.00 0.00 0.00 3.32
358 359 1.044611 GATCACTCCTCCCCACTAGC 58.955 60.000 0.00 0.00 0.00 3.42
359 360 2.765689 AGATCACTCCTCCCCACTAG 57.234 55.000 0.00 0.00 0.00 2.57
360 361 3.107601 CAAAGATCACTCCTCCCCACTA 58.892 50.000 0.00 0.00 0.00 2.74
361 362 1.912043 CAAAGATCACTCCTCCCCACT 59.088 52.381 0.00 0.00 0.00 4.00
362 363 1.680249 GCAAAGATCACTCCTCCCCAC 60.680 57.143 0.00 0.00 0.00 4.61
363 364 0.620556 GCAAAGATCACTCCTCCCCA 59.379 55.000 0.00 0.00 0.00 4.96
364 365 0.620556 TGCAAAGATCACTCCTCCCC 59.379 55.000 0.00 0.00 0.00 4.81
365 366 2.496899 TTGCAAAGATCACTCCTCCC 57.503 50.000 0.00 0.00 0.00 4.30
366 367 4.279420 ACTTTTTGCAAAGATCACTCCTCC 59.721 41.667 12.41 0.00 41.97 4.30
367 368 5.444663 ACTTTTTGCAAAGATCACTCCTC 57.555 39.130 12.41 0.00 41.97 3.71
368 369 4.279420 GGACTTTTTGCAAAGATCACTCCT 59.721 41.667 12.41 0.00 41.97 3.69
369 370 4.279420 AGGACTTTTTGCAAAGATCACTCC 59.721 41.667 12.41 11.05 41.97 3.85
370 371 5.444663 AGGACTTTTTGCAAAGATCACTC 57.555 39.130 12.41 2.98 41.97 3.51
371 372 4.023707 CGAGGACTTTTTGCAAAGATCACT 60.024 41.667 12.41 9.39 41.97 3.41
372 373 4.222114 CGAGGACTTTTTGCAAAGATCAC 58.778 43.478 12.41 4.74 41.97 3.06
373 374 3.882888 ACGAGGACTTTTTGCAAAGATCA 59.117 39.130 12.41 0.00 41.97 2.92
374 375 4.489679 ACGAGGACTTTTTGCAAAGATC 57.510 40.909 12.41 10.77 41.97 2.75
375 376 4.918810 AACGAGGACTTTTTGCAAAGAT 57.081 36.364 12.41 1.74 41.97 2.40
376 377 5.821516 TTAACGAGGACTTTTTGCAAAGA 57.178 34.783 12.41 7.13 41.97 2.52
377 378 7.860872 ACTAATTAACGAGGACTTTTTGCAAAG 59.139 33.333 12.41 4.16 44.57 2.77
378 379 7.708998 ACTAATTAACGAGGACTTTTTGCAAA 58.291 30.769 8.05 8.05 0.00 3.68
379 380 7.266922 ACTAATTAACGAGGACTTTTTGCAA 57.733 32.000 0.00 0.00 0.00 4.08
380 381 6.870971 ACTAATTAACGAGGACTTTTTGCA 57.129 33.333 0.00 0.00 0.00 4.08
381 382 9.836076 AATTACTAATTAACGAGGACTTTTTGC 57.164 29.630 0.00 0.00 0.00 3.68
386 387 9.955102 AGGAAAATTACTAATTAACGAGGACTT 57.045 29.630 0.00 0.00 0.00 3.01
415 416 7.443879 ACAAACAAAAATATGGCCCTAAACAAG 59.556 33.333 0.00 0.00 0.00 3.16
428 429 9.200817 AGATATACAGCCCACAAACAAAAATAT 57.799 29.630 0.00 0.00 0.00 1.28
430 431 7.480760 AGATATACAGCCCACAAACAAAAAT 57.519 32.000 0.00 0.00 0.00 1.82
434 435 5.565509 TCAAGATATACAGCCCACAAACAA 58.434 37.500 0.00 0.00 0.00 2.83
451 452 7.301868 TCAAACTGGGCTTTTAAATCAAGAT 57.698 32.000 0.00 0.00 0.00 2.40
458 460 5.400066 GCCTATCAAACTGGGCTTTTAAA 57.600 39.130 0.00 0.00 39.53 1.52
507 509 4.260656 GCGTTTCATCGTGATCATGTTTTC 59.739 41.667 14.52 2.23 0.00 2.29
561 617 8.507249 GTTATTTATGGATGGCTACAACAGATC 58.493 37.037 0.00 0.00 0.00 2.75
620 676 1.367471 GCGGATGGGATGACGATGA 59.633 57.895 0.00 0.00 0.00 2.92
622 678 1.821061 GAGGCGGATGGGATGACGAT 61.821 60.000 0.00 0.00 0.00 3.73
623 679 2.443952 AGGCGGATGGGATGACGA 60.444 61.111 0.00 0.00 0.00 4.20
624 680 2.029666 GAGGCGGATGGGATGACG 59.970 66.667 0.00 0.00 0.00 4.35
625 681 1.070445 CAGAGGCGGATGGGATGAC 59.930 63.158 0.00 0.00 0.00 3.06
626 682 2.811514 GCAGAGGCGGATGGGATGA 61.812 63.158 0.00 0.00 0.00 2.92
627 683 2.281345 GCAGAGGCGGATGGGATG 60.281 66.667 0.00 0.00 0.00 3.51
671 746 1.542915 TGAGGAACGTACCGGAAGAAG 59.457 52.381 9.46 0.00 34.73 2.85
672 747 1.270550 GTGAGGAACGTACCGGAAGAA 59.729 52.381 9.46 0.00 34.73 2.52
673 748 0.883833 GTGAGGAACGTACCGGAAGA 59.116 55.000 9.46 0.00 34.73 2.87
702 777 2.917751 GGAGGGCGGATCGATGGA 60.918 66.667 0.54 0.00 0.00 3.41
705 780 2.601966 GAGGGAGGGCGGATCGAT 60.602 66.667 0.00 0.00 0.00 3.59
714 789 1.918957 AGTGAAATTGAGGAGGGAGGG 59.081 52.381 0.00 0.00 0.00 4.30
741 818 3.828875 TTTTCGTTCCCTTTTTGCCAT 57.171 38.095 0.00 0.00 0.00 4.40
751 828 2.239201 CGCGATTTCTTTTTCGTTCCC 58.761 47.619 0.00 0.00 37.66 3.97
752 829 2.239201 CCGCGATTTCTTTTTCGTTCC 58.761 47.619 8.23 0.00 37.66 3.62
763 840 1.558383 CGATCGGAACCGCGATTTC 59.442 57.895 8.23 9.96 39.59 2.17
765 842 2.279252 CCGATCGGAACCGCGATT 60.279 61.111 30.62 0.00 39.59 3.34
766 843 4.280494 CCCGATCGGAACCGCGAT 62.280 66.667 35.42 0.00 39.59 4.58
835 924 3.437741 TCATGCATGCATCGATAATCACC 59.562 43.478 30.07 0.00 33.90 4.02
836 925 4.673534 TCATGCATGCATCGATAATCAC 57.326 40.909 30.07 0.00 33.90 3.06
837 926 5.229921 CATCATGCATGCATCGATAATCA 57.770 39.130 30.07 9.25 33.90 2.57
885 974 2.014128 CGGGCGAATTTCCACATACTT 58.986 47.619 0.00 0.00 0.00 2.24
904 993 0.729116 CAGATTTGTAGGCAGGCACG 59.271 55.000 0.00 0.00 0.00 5.34
916 1005 4.261405 CGACCTAGCTAGACTCCAGATTTG 60.261 50.000 22.70 3.15 0.00 2.32
1098 1187 3.646715 CCGGGGAAGAGGGTTGCA 61.647 66.667 0.00 0.00 0.00 4.08
1302 1391 2.362375 TGGCCTTTTCCGATGGGC 60.362 61.111 3.32 0.00 45.31 5.36
1497 1768 1.539929 CGGGTGATGATCTTCAGGCTC 60.540 57.143 11.34 0.95 0.00 4.70
1590 1861 1.548081 TGATGTTGGCCTTGTGGATG 58.452 50.000 3.32 0.00 34.57 3.51
1620 1891 2.683933 TGGAGGAAGAGCCCGTCC 60.684 66.667 0.00 0.00 40.64 4.79
1629 1900 2.435586 CGGCAGCACTGGAGGAAG 60.436 66.667 0.00 0.00 0.00 3.46
1737 2241 2.816360 CGGCATCACCAGCACATCG 61.816 63.158 0.00 0.00 39.03 3.84
1791 2295 1.815421 CAGGCCTCCGATCAAACCG 60.815 63.158 0.00 0.00 0.00 4.44
1813 2317 0.322277 ATGTTGCAGCTGGGAGTCAG 60.322 55.000 17.12 0.00 46.03 3.51
2079 2659 3.190744 GGTGCATGCTCAATCAGATATGG 59.809 47.826 20.33 0.00 0.00 2.74
2096 2684 2.439507 AGAAAGAAAGAGAGGTGGTGCA 59.560 45.455 0.00 0.00 0.00 4.57
2097 2685 3.070748 GAGAAAGAAAGAGAGGTGGTGC 58.929 50.000 0.00 0.00 0.00 5.01
2098 2686 4.615588 AGAGAAAGAAAGAGAGGTGGTG 57.384 45.455 0.00 0.00 0.00 4.17
2099 2687 5.638530 AAAGAGAAAGAAAGAGAGGTGGT 57.361 39.130 0.00 0.00 0.00 4.16
2196 2784 9.272901 GTAAAACTTTTCCAAGAACAAAAATGC 57.727 29.630 0.00 0.00 33.72 3.56
2252 2841 2.159156 GCTGATGCTGCCAATCAATGAA 60.159 45.455 0.00 0.00 36.03 2.57
2319 2908 7.052248 ACGGCTAGCTAGGTTTATTTTTACAT 58.948 34.615 22.10 0.00 0.00 2.29
2339 2928 1.178276 CAGAGGTAACAGAGACGGCT 58.822 55.000 0.00 0.00 41.41 5.52
2377 2966 2.032178 GCCAGACAAGACAACAACACTC 59.968 50.000 0.00 0.00 0.00 3.51
2400 3008 1.470098 GCTTGATCTGACCGCAATGTT 59.530 47.619 0.00 0.00 0.00 2.71
2424 3032 2.817258 CGTAGGAGGGCATTAGAGAGAG 59.183 54.545 0.00 0.00 0.00 3.20
2425 3033 2.175069 ACGTAGGAGGGCATTAGAGAGA 59.825 50.000 0.00 0.00 0.00 3.10
2456 3064 5.016831 GGACAGAATAGGGTTTGGTGATTT 58.983 41.667 0.00 0.00 0.00 2.17
2469 3077 3.623960 AGACGAGACGAAGGACAGAATAG 59.376 47.826 0.00 0.00 0.00 1.73
2473 3081 1.535896 CAAGACGAGACGAAGGACAGA 59.464 52.381 0.00 0.00 0.00 3.41
2476 3084 0.039437 TGCAAGACGAGACGAAGGAC 60.039 55.000 0.00 0.00 0.00 3.85
2504 3112 8.975295 AGCTATTCTTTGCTTTGGAAATCTATT 58.025 29.630 0.00 0.00 35.86 1.73
2551 3159 7.494625 ACGATTAACTTCAAAGTTCAGTTCTCA 59.505 33.333 11.22 0.00 45.65 3.27
2555 3163 7.548196 TGACGATTAACTTCAAAGTTCAGTT 57.452 32.000 11.22 0.00 45.65 3.16
2612 3220 1.465187 CGAATTTTCGCTTCCCGGTTC 60.465 52.381 0.00 0.00 44.26 3.62
2674 3282 1.938577 GCAGTCAGATGCGAATCATGT 59.061 47.619 6.08 0.00 36.28 3.21
2705 3314 2.164422 GCAGGAGGTTTATCAAAGGTGC 59.836 50.000 0.00 0.00 0.00 5.01
2711 3320 2.877097 TGCTGCAGGAGGTTTATCAA 57.123 45.000 17.12 0.00 0.00 2.57
2721 3330 2.046988 CACGGACATGCTGCAGGA 60.047 61.111 22.12 14.45 0.00 3.86
2722 3331 2.359107 ACACGGACATGCTGCAGG 60.359 61.111 17.12 13.33 0.00 4.85
2723 3332 1.962822 ACACACGGACATGCTGCAG 60.963 57.895 10.11 10.11 0.00 4.41
2734 3343 1.289109 GACGGAATCCACACACACGG 61.289 60.000 0.00 0.00 0.00 4.94
2810 3424 2.201732 CCACACGAATGATTAGTCCCG 58.798 52.381 0.00 0.00 0.00 5.14
2858 3472 6.209192 TGCATCACATAAATTCAAGACCAAGT 59.791 34.615 0.00 0.00 0.00 3.16
2956 3573 3.383546 TGTCATCGCACGCTATTTTTC 57.616 42.857 0.00 0.00 0.00 2.29
2961 3578 3.059597 GCTATTTTGTCATCGCACGCTAT 60.060 43.478 0.00 0.00 0.00 2.97
2962 3579 2.284150 GCTATTTTGTCATCGCACGCTA 59.716 45.455 0.00 0.00 0.00 4.26
2963 3580 1.062587 GCTATTTTGTCATCGCACGCT 59.937 47.619 0.00 0.00 0.00 5.07
2964 3581 1.202020 TGCTATTTTGTCATCGCACGC 60.202 47.619 0.00 0.00 0.00 5.34
2965 3582 2.804421 TGCTATTTTGTCATCGCACG 57.196 45.000 0.00 0.00 0.00 5.34
2966 3583 3.365832 CCATGCTATTTTGTCATCGCAC 58.634 45.455 0.00 0.00 28.40 5.34
2967 3584 2.223548 GCCATGCTATTTTGTCATCGCA 60.224 45.455 0.00 0.00 30.13 5.10
2968 3585 2.388121 GCCATGCTATTTTGTCATCGC 58.612 47.619 0.00 0.00 0.00 4.58
2969 3586 2.287788 GGGCCATGCTATTTTGTCATCG 60.288 50.000 4.39 0.00 0.00 3.84
2970 3587 2.961062 AGGGCCATGCTATTTTGTCATC 59.039 45.455 6.18 0.00 0.00 2.92
3028 3656 5.989168 TGAAATTCAGTGTACAATGTCTCGT 59.011 36.000 21.56 6.16 0.00 4.18
3056 3696 3.988379 TTGATTTTCCACTGCACTCAC 57.012 42.857 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.