Multiple sequence alignment - TraesCS2B01G591900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G591900 chr2B 100.000 4597 0 0 1 4597 777172676 777168080 0.000000e+00 8490.0
1 TraesCS2B01G591900 chr2B 97.527 566 12 2 1 565 248136148 248136712 0.000000e+00 966.0
2 TraesCS2B01G591900 chr2D 93.129 1761 53 21 619 2370 634258577 634256876 0.000000e+00 2519.0
3 TraesCS2B01G591900 chr2D 95.893 633 14 5 2367 2994 634256846 634256221 0.000000e+00 1014.0
4 TraesCS2B01G591900 chr2D 95.674 601 23 2 2997 3597 634256163 634255566 0.000000e+00 963.0
5 TraesCS2B01G591900 chr2D 89.455 550 47 6 4053 4597 634270141 634270684 0.000000e+00 684.0
6 TraesCS2B01G591900 chr2A 92.922 1752 70 22 563 2305 779292242 779293948 0.000000e+00 2499.0
7 TraesCS2B01G591900 chr2A 89.381 791 51 19 3014 3798 779294896 779295659 0.000000e+00 965.0
8 TraesCS2B01G591900 chr2A 96.161 573 17 2 2425 2997 779294001 779294568 0.000000e+00 931.0
9 TraesCS2B01G591900 chr2A 88.342 549 57 5 4053 4597 779604108 779604653 0.000000e+00 652.0
10 TraesCS2B01G591900 chr2A 87.978 549 59 5 4053 4597 779496476 779497021 3.880000e-180 641.0
11 TraesCS2B01G591900 chr2A 87.337 537 61 5 4065 4597 779472687 779473220 3.930000e-170 608.0
12 TraesCS2B01G591900 chr2A 87.337 537 61 5 4065 4597 779587542 779588075 3.930000e-170 608.0
13 TraesCS2B01G591900 chr2A 86.694 496 59 5 4065 4556 755328904 755328412 1.120000e-150 544.0
14 TraesCS2B01G591900 chr2A 87.778 180 4 2 383 561 698125024 698124862 1.310000e-45 195.0
15 TraesCS2B01G591900 chr2A 84.940 166 18 5 3706 3869 779468144 779468304 1.320000e-35 161.0
16 TraesCS2B01G591900 chr5A 89.837 1102 93 14 2440 3530 584966760 584967853 0.000000e+00 1397.0
17 TraesCS2B01G591900 chr5A 91.791 402 27 5 1903 2304 584966281 584966676 5.200000e-154 555.0
18 TraesCS2B01G591900 chr5A 96.530 317 9 1 1471 1785 584965902 584966218 1.470000e-144 523.0
19 TraesCS2B01G591900 chr5A 85.156 256 30 5 1075 1324 584965579 584965832 5.900000e-64 255.0
20 TraesCS2B01G591900 chr5A 87.065 201 26 0 1580 1780 585234689 585234889 1.290000e-55 228.0
21 TraesCS2B01G591900 chr5A 87.000 200 26 0 1581 1780 585396926 585397125 4.630000e-55 226.0
22 TraesCS2B01G591900 chr5A 79.545 220 41 4 2061 2278 585397473 585397690 2.210000e-33 154.0
23 TraesCS2B01G591900 chr5A 77.626 219 47 2 2061 2278 585235221 585235438 1.040000e-26 132.0
24 TraesCS2B01G591900 chr5D 88.265 1176 103 25 2384 3530 464492491 464493660 0.000000e+00 1375.0
25 TraesCS2B01G591900 chr5D 94.542 568 26 5 1 565 353842344 353841779 0.000000e+00 872.0
26 TraesCS2B01G591900 chr5D 91.294 402 29 4 1899 2300 464492060 464492455 1.120000e-150 544.0
27 TraesCS2B01G591900 chr5D 95.899 317 11 1 1471 1785 464491658 464491974 3.170000e-141 512.0
28 TraesCS2B01G591900 chr5D 87.402 254 24 6 1075 1324 464491357 464491606 7.530000e-73 285.0
29 TraesCS2B01G591900 chr5D 87.500 200 25 0 1581 1780 464990657 464990856 9.950000e-57 231.0
30 TraesCS2B01G591900 chr5D 80.269 223 40 4 2061 2281 464991188 464991408 1.020000e-36 165.0
31 TraesCS2B01G591900 chr5D 79.372 223 42 4 2061 2281 464917485 464917705 2.210000e-33 154.0
32 TraesCS2B01G591900 chr5D 82.828 99 17 0 1179 1277 464990419 464990517 6.330000e-14 89.8
33 TraesCS2B01G591900 chr1B 98.413 567 7 2 1 566 33935747 33936312 0.000000e+00 996.0
34 TraesCS2B01G591900 chr5B 97.531 567 12 2 1 565 118947430 118947996 0.000000e+00 968.0
35 TraesCS2B01G591900 chr5B 91.841 527 41 2 2427 2953 571835770 571835246 0.000000e+00 734.0
36 TraesCS2B01G591900 chr5B 92.032 502 37 1 3029 3527 571835147 571834646 0.000000e+00 702.0
37 TraesCS2B01G591900 chr5B 91.626 406 28 4 1895 2300 571836257 571835858 1.440000e-154 556.0
38 TraesCS2B01G591900 chr5B 96.795 312 8 1 1471 1780 571836684 571836373 1.900000e-143 520.0
39 TraesCS2B01G591900 chr5B 84.231 260 30 9 1075 1324 571837000 571836742 4.600000e-60 243.0
40 TraesCS2B01G591900 chr5B 88.500 200 23 0 1581 1780 572342096 572342295 4.600000e-60 243.0
41 TraesCS2B01G591900 chr5B 87.671 73 9 0 1205 1277 572341884 572341956 8.190000e-13 86.1
42 TraesCS2B01G591900 chr3B 95.606 569 23 2 1 567 553569375 553569943 0.000000e+00 911.0
43 TraesCS2B01G591900 chr4A 94.000 250 1 2 317 565 656499875 656500111 2.610000e-97 366.0
44 TraesCS2B01G591900 chr4A 81.395 86 14 2 151 235 706101818 706101902 8.250000e-08 69.4
45 TraesCS2B01G591900 chr4A 79.570 93 17 2 144 235 706168108 706168199 1.070000e-06 65.8
46 TraesCS2B01G591900 chr4A 75.172 145 32 4 144 286 707166727 707166585 1.070000e-06 65.8
47 TraesCS2B01G591900 chrUn 81.395 86 14 2 151 235 359189503 359189587 8.250000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G591900 chr2B 777168080 777172676 4596 True 8490.000000 8490 100.000000 1 4597 1 chr2B.!!$R1 4596
1 TraesCS2B01G591900 chr2B 248136148 248136712 564 False 966.000000 966 97.527000 1 565 1 chr2B.!!$F1 564
2 TraesCS2B01G591900 chr2D 634255566 634258577 3011 True 1498.666667 2519 94.898667 619 3597 3 chr2D.!!$R1 2978
3 TraesCS2B01G591900 chr2D 634270141 634270684 543 False 684.000000 684 89.455000 4053 4597 1 chr2D.!!$F1 544
4 TraesCS2B01G591900 chr2A 779292242 779295659 3417 False 1465.000000 2499 92.821333 563 3798 3 chr2A.!!$F6 3235
5 TraesCS2B01G591900 chr2A 779604108 779604653 545 False 652.000000 652 88.342000 4053 4597 1 chr2A.!!$F5 544
6 TraesCS2B01G591900 chr2A 779496476 779497021 545 False 641.000000 641 87.978000 4053 4597 1 chr2A.!!$F3 544
7 TraesCS2B01G591900 chr2A 779472687 779473220 533 False 608.000000 608 87.337000 4065 4597 1 chr2A.!!$F2 532
8 TraesCS2B01G591900 chr2A 779587542 779588075 533 False 608.000000 608 87.337000 4065 4597 1 chr2A.!!$F4 532
9 TraesCS2B01G591900 chr5A 584965579 584967853 2274 False 682.500000 1397 90.828500 1075 3530 4 chr5A.!!$F1 2455
10 TraesCS2B01G591900 chr5D 353841779 353842344 565 True 872.000000 872 94.542000 1 565 1 chr5D.!!$R1 564
11 TraesCS2B01G591900 chr5D 464491357 464493660 2303 False 679.000000 1375 90.715000 1075 3530 4 chr5D.!!$F2 2455
12 TraesCS2B01G591900 chr1B 33935747 33936312 565 False 996.000000 996 98.413000 1 566 1 chr1B.!!$F1 565
13 TraesCS2B01G591900 chr5B 118947430 118947996 566 False 968.000000 968 97.531000 1 565 1 chr5B.!!$F1 564
14 TraesCS2B01G591900 chr5B 571834646 571837000 2354 True 551.000000 734 91.305000 1075 3527 5 chr5B.!!$R1 2452
15 TraesCS2B01G591900 chr3B 553569375 553569943 568 False 911.000000 911 95.606000 1 567 1 chr3B.!!$F1 566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
836 841 0.970937 TCAGTCCATCGACCTCCACC 60.971 60.0 0.0 0.0 40.12 4.61 F
1066 1078 0.250338 ACCCACTTCTTTGCTCGACC 60.250 55.0 0.0 0.0 0.00 4.79 F
2421 2523 0.456824 CGTCCATCACTCAGACACGG 60.457 60.0 0.0 0.0 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2449 2570 0.798776 GCCAGTCCGTGATCACAAAG 59.201 55.0 24.93 13.08 0.0 2.77 R
3020 3468 0.657840 GTGGTGCCTGCATCGTATTC 59.342 55.0 0.00 0.00 0.0 1.75 R
4098 4552 0.033504 GGGGATCATGTACGCGATGT 59.966 55.0 15.93 0.00 0.0 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
287 288 5.965033 ATGGGTACAATCAGACTCTTCAT 57.035 39.130 0.00 0.00 0.00 2.57
606 609 4.513692 TCAGGGCGACATATTTAAAATCCG 59.486 41.667 0.00 0.00 0.00 4.18
643 646 1.452145 TTGCACCCGAGAGCCAAAAC 61.452 55.000 0.00 0.00 0.00 2.43
647 650 2.358737 CCGAGAGCCAAAACGCCT 60.359 61.111 0.00 0.00 0.00 5.52
782 787 4.369182 CTTTCTCGCCCGATTATAGTTGT 58.631 43.478 0.00 0.00 0.00 3.32
836 841 0.970937 TCAGTCCATCGACCTCCACC 60.971 60.000 0.00 0.00 40.12 4.61
841 846 4.148825 ATCGACCTCCACCGCTGC 62.149 66.667 0.00 0.00 0.00 5.25
1020 1031 6.293081 CCTCTCTATTTAAACCGCATGATGTG 60.293 42.308 0.00 0.00 0.00 3.21
1021 1032 6.112734 TCTCTATTTAAACCGCATGATGTGT 58.887 36.000 5.17 0.00 0.00 3.72
1066 1078 0.250338 ACCCACTTCTTTGCTCGACC 60.250 55.000 0.00 0.00 0.00 4.79
1189 1222 3.575256 ACGTATGTCAGGTACAAAGACCA 59.425 43.478 0.00 0.00 42.70 4.02
1348 1381 3.852578 TCCCTCCCTTAATTTGCTCTCTT 59.147 43.478 0.00 0.00 0.00 2.85
1350 1383 4.203226 CCTCCCTTAATTTGCTCTCTTCC 58.797 47.826 0.00 0.00 0.00 3.46
1352 1385 5.504853 CTCCCTTAATTTGCTCTCTTCCTT 58.495 41.667 0.00 0.00 0.00 3.36
1354 1387 4.642437 CCCTTAATTTGCTCTCTTCCTTCC 59.358 45.833 0.00 0.00 0.00 3.46
1355 1388 5.504853 CCTTAATTTGCTCTCTTCCTTCCT 58.495 41.667 0.00 0.00 0.00 3.36
1413 1446 1.600663 CGATTCTCGAAGGCAGCGTAT 60.601 52.381 0.00 0.00 43.74 3.06
1427 1460 1.135228 AGCGTATGTGTGCGTGTCATA 60.135 47.619 0.00 0.00 35.76 2.15
1428 1461 1.006391 GCGTATGTGTGCGTGTCATAC 60.006 52.381 0.00 0.00 39.91 2.39
1429 1462 2.526077 CGTATGTGTGCGTGTCATACT 58.474 47.619 14.40 0.00 40.63 2.12
1430 1463 2.530297 CGTATGTGTGCGTGTCATACTC 59.470 50.000 14.40 0.00 40.63 2.59
1431 1464 3.730963 CGTATGTGTGCGTGTCATACTCT 60.731 47.826 14.40 0.00 40.63 3.24
1601 1634 4.650377 GCCTCGGCATCCCCATCC 62.650 72.222 2.41 0.00 41.49 3.51
1796 1829 1.850441 CGGTGCGTAATAACCTCTTCG 59.150 52.381 0.00 0.00 34.06 3.79
1882 1944 3.896133 CACATGCATCCGGCTGGC 61.896 66.667 6.73 6.15 45.15 4.85
1883 1945 4.119363 ACATGCATCCGGCTGGCT 62.119 61.111 6.73 0.00 45.15 4.75
1884 1946 3.592814 CATGCATCCGGCTGGCTG 61.593 66.667 11.24 11.24 45.15 4.85
1885 1947 4.889112 ATGCATCCGGCTGGCTGG 62.889 66.667 16.98 13.82 45.15 4.85
2016 2078 4.803426 GCAGGGCGACGTCTCCAG 62.803 72.222 25.02 17.43 0.00 3.86
2023 2085 1.446792 CGACGTCTCCAGCAAGCAT 60.447 57.895 14.70 0.00 0.00 3.79
2118 2180 3.573491 GCACCACGGGATAAGCGC 61.573 66.667 0.00 0.00 0.00 5.92
2198 2260 2.579201 CCGTCATCAAGGGCGTCT 59.421 61.111 0.00 0.00 0.00 4.18
2305 2370 1.624336 TGCACTTCAGGGTACGTACT 58.376 50.000 24.07 3.56 0.00 2.73
2332 2397 5.626142 ACGTATAATTTGCCATCCCACATA 58.374 37.500 0.00 0.00 0.00 2.29
2415 2517 3.588955 TGTCATTTCGTCCATCACTCAG 58.411 45.455 0.00 0.00 0.00 3.35
2416 2518 3.258123 TGTCATTTCGTCCATCACTCAGA 59.742 43.478 0.00 0.00 0.00 3.27
2417 2519 3.614616 GTCATTTCGTCCATCACTCAGAC 59.385 47.826 0.00 0.00 0.00 3.51
2418 2520 3.258123 TCATTTCGTCCATCACTCAGACA 59.742 43.478 0.00 0.00 0.00 3.41
2419 2521 2.724977 TTCGTCCATCACTCAGACAC 57.275 50.000 0.00 0.00 0.00 3.67
2420 2522 0.521735 TCGTCCATCACTCAGACACG 59.478 55.000 0.00 0.00 0.00 4.49
2421 2523 0.456824 CGTCCATCACTCAGACACGG 60.457 60.000 0.00 0.00 0.00 4.94
2422 2524 0.603569 GTCCATCACTCAGACACGGT 59.396 55.000 0.00 0.00 0.00 4.83
2423 2525 1.816835 GTCCATCACTCAGACACGGTA 59.183 52.381 0.00 0.00 0.00 4.02
2449 2570 2.438954 CGTACGTTACGTGCAGGGC 61.439 63.158 23.65 5.78 46.41 5.19
2718 2839 2.738521 CGAACACAGCCTCACCGG 60.739 66.667 0.00 0.00 0.00 5.28
2860 2981 1.404315 GCCAAGAAGATCCTCGTCGTT 60.404 52.381 0.00 0.00 30.11 3.85
2976 3101 1.107538 TTACCTCCATCGCCTCCTCG 61.108 60.000 0.00 0.00 0.00 4.63
3012 3460 7.115520 CACACATCTCTTAGTTGTTGACTACTG 59.884 40.741 8.20 0.00 40.51 2.74
3013 3461 7.148641 CACATCTCTTAGTTGTTGACTACTGT 58.851 38.462 8.20 0.00 40.51 3.55
3014 3462 8.297426 CACATCTCTTAGTTGTTGACTACTGTA 58.703 37.037 8.20 0.00 40.51 2.74
3015 3463 8.298140 ACATCTCTTAGTTGTTGACTACTGTAC 58.702 37.037 8.20 0.00 40.51 2.90
3016 3464 6.895898 TCTCTTAGTTGTTGACTACTGTACG 58.104 40.000 8.20 0.00 40.51 3.67
3017 3465 6.484643 TCTCTTAGTTGTTGACTACTGTACGT 59.515 38.462 8.20 0.00 40.51 3.57
3018 3466 7.657354 TCTCTTAGTTGTTGACTACTGTACGTA 59.343 37.037 8.20 0.00 40.51 3.57
3019 3467 7.576236 TCTTAGTTGTTGACTACTGTACGTAC 58.424 38.462 18.90 18.90 40.51 3.67
3020 3468 4.776743 AGTTGTTGACTACTGTACGTACG 58.223 43.478 20.18 15.01 36.65 3.67
3021 3469 4.511454 AGTTGTTGACTACTGTACGTACGA 59.489 41.667 24.41 9.08 36.65 3.43
3022 3470 5.007626 AGTTGTTGACTACTGTACGTACGAA 59.992 40.000 24.41 6.08 36.65 3.85
3043 3491 2.048023 CGATGCAGGCACCACCATT 61.048 57.895 0.00 0.00 43.14 3.16
3080 3528 1.006571 GCGGTGGACAAGAAGACGA 60.007 57.895 0.00 0.00 0.00 4.20
3310 3758 1.009900 CGTCGTCGAGCCATACCTC 60.010 63.158 0.00 0.00 39.71 3.85
3382 3830 2.733593 GTCGCCGACGTGCTCTTT 60.734 61.111 0.00 0.00 41.18 2.52
3530 3982 4.542890 CGGATCGCAGCTAGCTAC 57.457 61.111 18.86 11.48 42.61 3.58
3590 4042 6.263842 TCATCTTTTTCCATAGCATTAGCCTG 59.736 38.462 0.00 0.00 43.56 4.85
3593 4045 3.777106 TTCCATAGCATTAGCCTGAGG 57.223 47.619 0.00 0.00 43.56 3.86
3597 4049 4.846367 TCCATAGCATTAGCCTGAGGTTAT 59.154 41.667 0.00 0.00 43.56 1.89
3599 4051 6.006449 CCATAGCATTAGCCTGAGGTTATTT 58.994 40.000 0.00 0.00 43.56 1.40
3600 4052 7.017155 TCCATAGCATTAGCCTGAGGTTATTTA 59.983 37.037 0.00 0.00 43.56 1.40
3601 4053 7.665559 CCATAGCATTAGCCTGAGGTTATTTAA 59.334 37.037 0.00 0.00 43.56 1.52
3602 4054 9.236006 CATAGCATTAGCCTGAGGTTATTTAAT 57.764 33.333 0.00 0.00 43.56 1.40
3603 4055 9.813826 ATAGCATTAGCCTGAGGTTATTTAATT 57.186 29.630 0.00 0.00 43.56 1.40
3605 4057 9.067986 AGCATTAGCCTGAGGTTATTTAATTAC 57.932 33.333 0.00 0.00 43.56 1.89
3606 4058 9.067986 GCATTAGCCTGAGGTTATTTAATTACT 57.932 33.333 0.00 0.00 33.58 2.24
3609 4061 9.774413 TTAGCCTGAGGTTATTTAATTACTAGC 57.226 33.333 0.00 0.00 0.00 3.42
3610 4062 8.035448 AGCCTGAGGTTATTTAATTACTAGCT 57.965 34.615 0.00 0.00 0.00 3.32
3611 4063 8.495260 AGCCTGAGGTTATTTAATTACTAGCTT 58.505 33.333 0.00 0.00 0.00 3.74
3612 4064 9.121658 GCCTGAGGTTATTTAATTACTAGCTTT 57.878 33.333 0.00 0.00 0.00 3.51
3655 4107 3.694746 CGTGAGGCCTGAGTGGTA 58.305 61.111 12.00 0.00 38.35 3.25
3657 4109 0.537188 CGTGAGGCCTGAGTGGTAAT 59.463 55.000 12.00 0.00 38.35 1.89
3658 4110 1.471676 CGTGAGGCCTGAGTGGTAATC 60.472 57.143 12.00 0.00 38.35 1.75
3659 4111 0.824109 TGAGGCCTGAGTGGTAATCG 59.176 55.000 12.00 0.00 38.35 3.34
3661 4113 0.824759 AGGCCTGAGTGGTAATCGAC 59.175 55.000 3.11 0.00 38.35 4.20
3677 4129 7.075741 GGTAATCGACCGGAAATGATTTAATG 58.924 38.462 9.46 0.00 38.87 1.90
3679 4131 5.984233 TCGACCGGAAATGATTTAATGAG 57.016 39.130 9.46 0.00 0.00 2.90
3680 4132 5.666462 TCGACCGGAAATGATTTAATGAGA 58.334 37.500 9.46 0.00 0.00 3.27
3681 4133 6.110033 TCGACCGGAAATGATTTAATGAGAA 58.890 36.000 9.46 0.00 0.00 2.87
3682 4134 6.257849 TCGACCGGAAATGATTTAATGAGAAG 59.742 38.462 9.46 0.00 0.00 2.85
3683 4135 6.511767 CGACCGGAAATGATTTAATGAGAAGG 60.512 42.308 9.46 0.00 0.00 3.46
3684 4136 6.423182 ACCGGAAATGATTTAATGAGAAGGA 58.577 36.000 9.46 0.00 0.00 3.36
3685 4137 7.062957 ACCGGAAATGATTTAATGAGAAGGAT 58.937 34.615 9.46 0.00 0.00 3.24
3686 4138 7.561356 ACCGGAAATGATTTAATGAGAAGGATT 59.439 33.333 9.46 0.00 0.00 3.01
3687 4139 8.416329 CCGGAAATGATTTAATGAGAAGGATTT 58.584 33.333 0.00 0.00 0.00 2.17
3688 4140 9.455847 CGGAAATGATTTAATGAGAAGGATTTC 57.544 33.333 0.00 0.00 0.00 2.17
3699 4151 3.274288 AGAAGGATTTCACTTGATCGCC 58.726 45.455 0.00 0.00 35.70 5.54
3702 4154 3.798202 AGGATTTCACTTGATCGCCTAC 58.202 45.455 0.00 0.00 0.00 3.18
3728 4182 1.266842 CGTGTGTGTGAGTTCGTTGTG 60.267 52.381 0.00 0.00 0.00 3.33
3743 4197 1.070175 GTTGTGAACGTCCCATGAACG 60.070 52.381 16.05 16.05 45.37 3.95
3760 4214 4.023980 TGAACGTCCCAATCTCTAGTGAT 58.976 43.478 1.36 1.36 0.00 3.06
3770 4224 5.395657 CCAATCTCTAGTGATGCCACAGTTA 60.396 44.000 8.03 0.00 45.54 2.24
3775 4229 3.988976 AGTGATGCCACAGTTATGTCT 57.011 42.857 0.00 0.00 45.54 3.41
3780 4234 4.655649 TGATGCCACAGTTATGTCTATCCT 59.344 41.667 0.00 0.00 37.65 3.24
3785 4239 5.698545 GCCACAGTTATGTCTATCCTGAATC 59.301 44.000 0.00 0.00 37.65 2.52
3786 4240 6.686378 GCCACAGTTATGTCTATCCTGAATCA 60.686 42.308 0.00 0.00 37.65 2.57
3798 4252 5.604758 ATCCTGAATCATCAACTTCTCGA 57.395 39.130 0.00 0.00 34.49 4.04
3799 4253 5.604758 TCCTGAATCATCAACTTCTCGAT 57.395 39.130 0.00 0.00 34.49 3.59
3800 4254 5.595885 TCCTGAATCATCAACTTCTCGATC 58.404 41.667 0.00 0.00 34.49 3.69
3801 4255 4.443725 CCTGAATCATCAACTTCTCGATCG 59.556 45.833 9.36 9.36 34.49 3.69
3802 4256 5.248870 TGAATCATCAACTTCTCGATCGA 57.751 39.130 18.32 18.32 30.99 3.59
3803 4257 5.277047 TGAATCATCAACTTCTCGATCGAG 58.723 41.667 34.20 34.20 36.77 4.04
3804 4258 4.909696 ATCATCAACTTCTCGATCGAGT 57.090 40.909 36.68 21.36 42.49 4.18
3805 4259 4.703645 TCATCAACTTCTCGATCGAGTT 57.296 40.909 36.68 25.27 42.49 3.01
3806 4260 4.663166 TCATCAACTTCTCGATCGAGTTC 58.337 43.478 36.68 0.00 42.49 3.01
3807 4261 3.118807 TCAACTTCTCGATCGAGTTCG 57.881 47.619 36.68 27.84 42.49 3.95
3808 4262 2.483106 TCAACTTCTCGATCGAGTTCGT 59.517 45.455 36.68 28.37 42.49 3.85
3809 4263 2.810028 ACTTCTCGATCGAGTTCGTC 57.190 50.000 36.68 0.00 42.49 4.20
3810 4264 2.074576 ACTTCTCGATCGAGTTCGTCA 58.925 47.619 36.68 19.30 42.49 4.35
3811 4265 2.159680 ACTTCTCGATCGAGTTCGTCAC 60.160 50.000 36.68 0.00 42.49 3.67
3812 4266 1.435577 TCTCGATCGAGTTCGTCACA 58.564 50.000 36.68 17.94 42.49 3.58
3813 4267 1.802365 TCTCGATCGAGTTCGTCACAA 59.198 47.619 36.68 17.27 42.49 3.33
3814 4268 2.418976 TCTCGATCGAGTTCGTCACAAT 59.581 45.455 36.68 0.00 42.49 2.71
3815 4269 2.778928 CTCGATCGAGTTCGTCACAATC 59.221 50.000 32.23 0.00 40.03 2.67
3816 4270 2.160813 TCGATCGAGTTCGTCACAATCA 59.839 45.455 15.15 0.00 40.03 2.57
3817 4271 3.108881 CGATCGAGTTCGTCACAATCAT 58.891 45.455 10.26 0.00 40.80 2.45
3818 4272 3.547868 CGATCGAGTTCGTCACAATCATT 59.452 43.478 10.26 0.00 40.80 2.57
3819 4273 4.031765 CGATCGAGTTCGTCACAATCATTT 59.968 41.667 10.26 0.00 40.80 2.32
3820 4274 5.444613 CGATCGAGTTCGTCACAATCATTTT 60.445 40.000 10.26 0.00 40.80 1.82
3821 4275 5.017484 TCGAGTTCGTCACAATCATTTTG 57.983 39.130 1.07 0.00 40.80 2.44
3822 4276 4.509970 TCGAGTTCGTCACAATCATTTTGT 59.490 37.500 1.07 0.00 40.80 2.83
3823 4277 4.840772 CGAGTTCGTCACAATCATTTTGTC 59.159 41.667 0.00 0.00 34.11 3.18
3824 4278 5.558083 CGAGTTCGTCACAATCATTTTGTCA 60.558 40.000 0.00 0.00 34.11 3.58
3825 4279 5.510671 AGTTCGTCACAATCATTTTGTCAC 58.489 37.500 0.00 0.00 0.00 3.67
3826 4280 5.296780 AGTTCGTCACAATCATTTTGTCACT 59.703 36.000 0.00 0.00 0.00 3.41
3827 4281 5.749596 TCGTCACAATCATTTTGTCACTT 57.250 34.783 0.00 0.00 0.00 3.16
3828 4282 6.130298 TCGTCACAATCATTTTGTCACTTT 57.870 33.333 0.00 0.00 0.00 2.66
3829 4283 6.559810 TCGTCACAATCATTTTGTCACTTTT 58.440 32.000 0.00 0.00 0.00 2.27
3830 4284 6.690957 TCGTCACAATCATTTTGTCACTTTTC 59.309 34.615 0.00 0.00 0.00 2.29
3831 4285 6.074888 CGTCACAATCATTTTGTCACTTTTCC 60.075 38.462 0.00 0.00 0.00 3.13
3832 4286 6.756074 GTCACAATCATTTTGTCACTTTTCCA 59.244 34.615 0.00 0.00 0.00 3.53
3833 4287 7.277539 GTCACAATCATTTTGTCACTTTTCCAA 59.722 33.333 0.00 0.00 0.00 3.53
3834 4288 7.986320 TCACAATCATTTTGTCACTTTTCCAAT 59.014 29.630 0.00 0.00 0.00 3.16
3835 4289 8.277713 CACAATCATTTTGTCACTTTTCCAATC 58.722 33.333 0.00 0.00 0.00 2.67
3836 4290 7.986320 ACAATCATTTTGTCACTTTTCCAATCA 59.014 29.630 0.00 0.00 0.00 2.57
3837 4291 8.995220 CAATCATTTTGTCACTTTTCCAATCAT 58.005 29.630 0.00 0.00 0.00 2.45
3838 4292 9.563748 AATCATTTTGTCACTTTTCCAATCATT 57.436 25.926 0.00 0.00 0.00 2.57
3839 4293 8.961294 TCATTTTGTCACTTTTCCAATCATTT 57.039 26.923 0.00 0.00 0.00 2.32
3840 4294 8.828644 TCATTTTGTCACTTTTCCAATCATTTG 58.171 29.630 0.00 0.00 0.00 2.32
3841 4295 6.601741 TTTGTCACTTTTCCAATCATTTGC 57.398 33.333 0.00 0.00 0.00 3.68
3842 4296 5.273674 TGTCACTTTTCCAATCATTTGCA 57.726 34.783 0.00 0.00 0.00 4.08
3843 4297 5.856156 TGTCACTTTTCCAATCATTTGCAT 58.144 33.333 0.00 0.00 0.00 3.96
3844 4298 6.289834 TGTCACTTTTCCAATCATTTGCATT 58.710 32.000 0.00 0.00 0.00 3.56
3845 4299 6.424509 TGTCACTTTTCCAATCATTTGCATTC 59.575 34.615 0.00 0.00 0.00 2.67
3846 4300 5.933463 TCACTTTTCCAATCATTTGCATTCC 59.067 36.000 0.00 0.00 0.00 3.01
3847 4301 4.931002 ACTTTTCCAATCATTTGCATTCCG 59.069 37.500 0.00 0.00 0.00 4.30
3848 4302 2.582728 TCCAATCATTTGCATTCCGC 57.417 45.000 0.00 0.00 42.89 5.54
3863 4317 4.295381 CGCACACGGACCAAAAAC 57.705 55.556 0.00 0.00 34.97 2.43
3864 4318 1.429825 CGCACACGGACCAAAAACA 59.570 52.632 0.00 0.00 34.97 2.83
3865 4319 0.179161 CGCACACGGACCAAAAACAA 60.179 50.000 0.00 0.00 34.97 2.83
3866 4320 1.732732 CGCACACGGACCAAAAACAAA 60.733 47.619 0.00 0.00 34.97 2.83
3867 4321 1.923864 GCACACGGACCAAAAACAAAG 59.076 47.619 0.00 0.00 0.00 2.77
3868 4322 1.923864 CACACGGACCAAAAACAAAGC 59.076 47.619 0.00 0.00 0.00 3.51
3869 4323 1.822371 ACACGGACCAAAAACAAAGCT 59.178 42.857 0.00 0.00 0.00 3.74
3870 4324 2.232696 ACACGGACCAAAAACAAAGCTT 59.767 40.909 0.00 0.00 0.00 3.74
3871 4325 2.857748 CACGGACCAAAAACAAAGCTTC 59.142 45.455 0.00 0.00 0.00 3.86
3872 4326 2.758423 ACGGACCAAAAACAAAGCTTCT 59.242 40.909 0.00 0.00 0.00 2.85
3873 4327 3.181490 ACGGACCAAAAACAAAGCTTCTC 60.181 43.478 0.00 0.00 0.00 2.87
3874 4328 3.066760 CGGACCAAAAACAAAGCTTCTCT 59.933 43.478 0.00 0.00 0.00 3.10
3875 4329 4.440112 CGGACCAAAAACAAAGCTTCTCTT 60.440 41.667 0.00 0.00 36.34 2.85
3876 4330 4.805719 GGACCAAAAACAAAGCTTCTCTTG 59.194 41.667 0.00 0.00 34.67 3.02
3877 4331 5.405935 ACCAAAAACAAAGCTTCTCTTGT 57.594 34.783 0.00 0.00 34.67 3.16
3878 4332 5.793817 ACCAAAAACAAAGCTTCTCTTGTT 58.206 33.333 8.17 8.17 34.67 2.83
3879 4333 5.639082 ACCAAAAACAAAGCTTCTCTTGTTG 59.361 36.000 13.53 9.71 34.67 3.33
3880 4334 5.868801 CCAAAAACAAAGCTTCTCTTGTTGA 59.131 36.000 13.53 0.00 34.67 3.18
3881 4335 6.035327 CCAAAAACAAAGCTTCTCTTGTTGAG 59.965 38.462 13.53 7.73 43.96 3.02
3882 4336 5.904362 AAACAAAGCTTCTCTTGTTGAGT 57.096 34.783 13.53 0.00 43.13 3.41
3883 4337 7.391148 AAAACAAAGCTTCTCTTGTTGAGTA 57.609 32.000 13.53 0.00 43.13 2.59
3884 4338 5.993106 ACAAAGCTTCTCTTGTTGAGTAC 57.007 39.130 0.00 0.00 43.13 2.73
3885 4339 4.816925 ACAAAGCTTCTCTTGTTGAGTACC 59.183 41.667 0.00 0.00 43.13 3.34
3886 4340 4.689612 AAGCTTCTCTTGTTGAGTACCA 57.310 40.909 0.00 0.00 43.13 3.25
3887 4341 4.689612 AGCTTCTCTTGTTGAGTACCAA 57.310 40.909 0.00 0.00 43.13 3.67
3888 4342 5.036117 AGCTTCTCTTGTTGAGTACCAAA 57.964 39.130 0.00 0.00 43.13 3.28
3889 4343 5.437060 AGCTTCTCTTGTTGAGTACCAAAA 58.563 37.500 0.00 0.00 43.13 2.44
3890 4344 6.064717 AGCTTCTCTTGTTGAGTACCAAAAT 58.935 36.000 0.00 0.00 43.13 1.82
3891 4345 6.205658 AGCTTCTCTTGTTGAGTACCAAAATC 59.794 38.462 0.00 0.00 43.13 2.17
3892 4346 6.539649 TTCTCTTGTTGAGTACCAAAATCG 57.460 37.500 0.00 0.00 43.13 3.34
3893 4347 4.994852 TCTCTTGTTGAGTACCAAAATCGG 59.005 41.667 0.00 0.00 43.13 4.18
3894 4348 3.500680 TCTTGTTGAGTACCAAAATCGGC 59.499 43.478 0.00 0.00 36.36 5.54
3895 4349 3.134574 TGTTGAGTACCAAAATCGGCT 57.865 42.857 0.00 0.00 36.36 5.52
3896 4350 3.482436 TGTTGAGTACCAAAATCGGCTT 58.518 40.909 0.00 0.00 36.36 4.35
3897 4351 3.500680 TGTTGAGTACCAAAATCGGCTTC 59.499 43.478 0.00 0.00 36.36 3.86
3898 4352 2.343101 TGAGTACCAAAATCGGCTTCG 58.657 47.619 0.00 0.00 0.00 3.79
3899 4353 1.664151 GAGTACCAAAATCGGCTTCGG 59.336 52.381 0.00 0.00 34.13 4.30
3900 4354 1.276989 AGTACCAAAATCGGCTTCGGA 59.723 47.619 0.00 0.00 34.13 4.55
3901 4355 1.395954 GTACCAAAATCGGCTTCGGAC 59.604 52.381 0.00 0.00 34.13 4.79
3902 4356 0.036306 ACCAAAATCGGCTTCGGACT 59.964 50.000 0.00 0.00 34.13 3.85
3903 4357 0.727398 CCAAAATCGGCTTCGGACTC 59.273 55.000 0.00 0.00 34.13 3.36
3904 4358 1.438651 CAAAATCGGCTTCGGACTCA 58.561 50.000 0.00 0.00 34.13 3.41
3905 4359 1.128692 CAAAATCGGCTTCGGACTCAC 59.871 52.381 0.00 0.00 34.13 3.51
3906 4360 0.391263 AAATCGGCTTCGGACTCACC 60.391 55.000 0.00 0.00 34.13 4.02
3907 4361 1.541310 AATCGGCTTCGGACTCACCA 61.541 55.000 0.00 0.00 38.90 4.17
3908 4362 1.541310 ATCGGCTTCGGACTCACCAA 61.541 55.000 0.00 0.00 38.90 3.67
3909 4363 2.027625 CGGCTTCGGACTCACCAAC 61.028 63.158 0.00 0.00 38.90 3.77
3910 4364 1.070786 GGCTTCGGACTCACCAACA 59.929 57.895 0.00 0.00 38.90 3.33
3911 4365 0.534203 GGCTTCGGACTCACCAACAA 60.534 55.000 0.00 0.00 38.90 2.83
3912 4366 0.868406 GCTTCGGACTCACCAACAAG 59.132 55.000 0.00 0.00 38.90 3.16
3913 4367 0.868406 CTTCGGACTCACCAACAAGC 59.132 55.000 0.00 0.00 38.90 4.01
3914 4368 0.534203 TTCGGACTCACCAACAAGCC 60.534 55.000 0.00 0.00 38.90 4.35
3915 4369 2.317609 CGGACTCACCAACAAGCCG 61.318 63.158 0.00 0.00 38.90 5.52
3916 4370 1.966451 GGACTCACCAACAAGCCGG 60.966 63.158 0.00 0.00 38.79 6.13
3917 4371 2.594592 ACTCACCAACAAGCCGGC 60.595 61.111 21.89 21.89 0.00 6.13
3918 4372 3.726517 CTCACCAACAAGCCGGCG 61.727 66.667 23.20 10.77 0.00 6.46
3921 4375 4.344865 ACCAACAAGCCGGCGGAT 62.345 61.111 33.44 24.23 0.00 4.18
3922 4376 3.508840 CCAACAAGCCGGCGGATC 61.509 66.667 33.44 13.58 0.00 3.36
3923 4377 3.864686 CAACAAGCCGGCGGATCG 61.865 66.667 33.44 17.66 0.00 3.69
3936 4390 2.181426 CGGATCGCAGCTAGCTATAC 57.819 55.000 18.86 7.56 42.61 1.47
3937 4391 1.468914 CGGATCGCAGCTAGCTATACA 59.531 52.381 18.86 1.87 42.61 2.29
3938 4392 2.729467 CGGATCGCAGCTAGCTATACAC 60.729 54.545 18.86 9.18 42.61 2.90
3939 4393 2.416162 GGATCGCAGCTAGCTATACACC 60.416 54.545 18.86 14.35 42.61 4.16
3940 4394 0.959553 TCGCAGCTAGCTATACACCC 59.040 55.000 18.86 0.00 42.61 4.61
3941 4395 0.673985 CGCAGCTAGCTATACACCCA 59.326 55.000 18.86 0.00 42.61 4.51
3942 4396 1.068588 CGCAGCTAGCTATACACCCAA 59.931 52.381 18.86 0.00 42.61 4.12
3943 4397 2.289072 CGCAGCTAGCTATACACCCAAT 60.289 50.000 18.86 0.00 42.61 3.16
3944 4398 3.070018 GCAGCTAGCTATACACCCAATG 58.930 50.000 18.86 2.13 41.15 2.82
3945 4399 3.244215 GCAGCTAGCTATACACCCAATGA 60.244 47.826 18.86 0.00 41.15 2.57
3946 4400 4.564041 CAGCTAGCTATACACCCAATGAG 58.436 47.826 18.86 0.00 0.00 2.90
3947 4401 4.039730 CAGCTAGCTATACACCCAATGAGT 59.960 45.833 18.86 0.00 0.00 3.41
3948 4402 4.656112 AGCTAGCTATACACCCAATGAGTT 59.344 41.667 17.69 0.00 0.00 3.01
3949 4403 5.131142 AGCTAGCTATACACCCAATGAGTTT 59.869 40.000 17.69 0.00 0.00 2.66
3950 4404 5.237344 GCTAGCTATACACCCAATGAGTTTG 59.763 44.000 7.70 0.00 34.93 2.93
3966 4420 9.622004 CAATGAGTTTGGATTTCATCATATAGC 57.378 33.333 0.00 0.00 31.50 2.97
3967 4421 7.750229 TGAGTTTGGATTTCATCATATAGCC 57.250 36.000 0.00 0.00 0.00 3.93
3968 4422 7.520798 TGAGTTTGGATTTCATCATATAGCCT 58.479 34.615 0.00 0.00 0.00 4.58
3969 4423 7.446319 TGAGTTTGGATTTCATCATATAGCCTG 59.554 37.037 0.00 0.00 0.00 4.85
3970 4424 7.520798 AGTTTGGATTTCATCATATAGCCTGA 58.479 34.615 0.00 0.00 0.00 3.86
3971 4425 7.664731 AGTTTGGATTTCATCATATAGCCTGAG 59.335 37.037 0.00 0.00 0.00 3.35
3972 4426 6.940430 TGGATTTCATCATATAGCCTGAGA 57.060 37.500 0.00 0.00 0.00 3.27
3973 4427 7.506361 TGGATTTCATCATATAGCCTGAGAT 57.494 36.000 0.00 0.00 0.00 2.75
3974 4428 7.925622 TGGATTTCATCATATAGCCTGAGATT 58.074 34.615 0.00 0.00 0.00 2.40
3975 4429 7.827729 TGGATTTCATCATATAGCCTGAGATTG 59.172 37.037 0.00 0.00 0.00 2.67
3976 4430 8.045507 GGATTTCATCATATAGCCTGAGATTGA 58.954 37.037 0.00 0.00 0.00 2.57
3977 4431 9.616156 GATTTCATCATATAGCCTGAGATTGAT 57.384 33.333 0.00 0.00 0.00 2.57
3978 4432 9.616156 ATTTCATCATATAGCCTGAGATTGATC 57.384 33.333 0.00 0.00 0.00 2.92
3979 4433 7.122138 TCATCATATAGCCTGAGATTGATCC 57.878 40.000 0.00 0.00 0.00 3.36
3980 4434 5.946942 TCATATAGCCTGAGATTGATCCC 57.053 43.478 0.00 0.00 0.00 3.85
3981 4435 5.597758 TCATATAGCCTGAGATTGATCCCT 58.402 41.667 0.00 0.00 0.00 4.20
3982 4436 6.028131 TCATATAGCCTGAGATTGATCCCTT 58.972 40.000 0.00 0.00 0.00 3.95
3983 4437 7.191918 TCATATAGCCTGAGATTGATCCCTTA 58.808 38.462 0.00 0.00 0.00 2.69
3984 4438 7.344093 TCATATAGCCTGAGATTGATCCCTTAG 59.656 40.741 0.00 0.00 0.00 2.18
3985 4439 3.663198 AGCCTGAGATTGATCCCTTAGT 58.337 45.455 0.00 0.00 0.00 2.24
3986 4440 4.043596 AGCCTGAGATTGATCCCTTAGTT 58.956 43.478 0.00 0.00 0.00 2.24
3987 4441 4.102367 AGCCTGAGATTGATCCCTTAGTTC 59.898 45.833 0.00 0.00 0.00 3.01
3988 4442 4.141620 GCCTGAGATTGATCCCTTAGTTCA 60.142 45.833 0.00 0.00 0.00 3.18
3989 4443 5.455899 GCCTGAGATTGATCCCTTAGTTCAT 60.456 44.000 0.00 0.00 0.00 2.57
3990 4444 6.599445 CCTGAGATTGATCCCTTAGTTCATT 58.401 40.000 0.00 0.00 0.00 2.57
3991 4445 7.690301 GCCTGAGATTGATCCCTTAGTTCATTA 60.690 40.741 0.00 0.00 0.00 1.90
3992 4446 7.877097 CCTGAGATTGATCCCTTAGTTCATTAG 59.123 40.741 0.00 0.00 0.00 1.73
3993 4447 7.220030 TGAGATTGATCCCTTAGTTCATTAGC 58.780 38.462 0.00 0.00 0.00 3.09
3994 4448 6.538263 AGATTGATCCCTTAGTTCATTAGCC 58.462 40.000 0.00 0.00 0.00 3.93
3995 4449 4.706842 TGATCCCTTAGTTCATTAGCCC 57.293 45.455 0.00 0.00 0.00 5.19
3996 4450 3.394606 TGATCCCTTAGTTCATTAGCCCC 59.605 47.826 0.00 0.00 0.00 5.80
3997 4451 3.145559 TCCCTTAGTTCATTAGCCCCT 57.854 47.619 0.00 0.00 0.00 4.79
3998 4452 2.777692 TCCCTTAGTTCATTAGCCCCTG 59.222 50.000 0.00 0.00 0.00 4.45
3999 4453 2.576615 CCTTAGTTCATTAGCCCCTGC 58.423 52.381 0.00 0.00 37.95 4.85
4000 4454 2.092429 CCTTAGTTCATTAGCCCCTGCA 60.092 50.000 0.00 0.00 41.13 4.41
4001 4455 2.710096 TAGTTCATTAGCCCCTGCAC 57.290 50.000 0.00 0.00 41.13 4.57
4002 4456 0.392998 AGTTCATTAGCCCCTGCACG 60.393 55.000 0.00 0.00 41.13 5.34
4003 4457 1.748879 TTCATTAGCCCCTGCACGC 60.749 57.895 0.00 0.00 41.13 5.34
4004 4458 3.211963 CATTAGCCCCTGCACGCC 61.212 66.667 0.00 0.00 41.13 5.68
4005 4459 4.506255 ATTAGCCCCTGCACGCCC 62.506 66.667 0.00 0.00 41.13 6.13
4024 4478 1.858091 CCTGAGTGGGAAATCGATCG 58.142 55.000 9.36 9.36 0.00 3.69
4025 4479 1.409064 CCTGAGTGGGAAATCGATCGA 59.591 52.381 21.86 21.86 0.00 3.59
4026 4480 2.036475 CCTGAGTGGGAAATCGATCGAT 59.964 50.000 24.60 24.60 36.23 3.59
4027 4481 3.255888 CCTGAGTGGGAAATCGATCGATA 59.744 47.826 29.57 12.08 33.97 2.92
4028 4482 4.262036 CCTGAGTGGGAAATCGATCGATAA 60.262 45.833 29.57 11.35 33.97 1.75
4029 4483 5.270893 TGAGTGGGAAATCGATCGATAAA 57.729 39.130 29.57 11.68 33.97 1.40
4030 4484 5.666462 TGAGTGGGAAATCGATCGATAAAA 58.334 37.500 29.57 12.02 33.97 1.52
4031 4485 6.110033 TGAGTGGGAAATCGATCGATAAAAA 58.890 36.000 29.57 12.69 33.97 1.94
4056 4510 8.752766 AATAAATGAGCAAGATTTTGTGTCAG 57.247 30.769 8.46 0.00 34.79 3.51
4077 4531 2.814336 GGTGTTGGGAGAAACTGCTAAG 59.186 50.000 0.00 0.00 0.00 2.18
4084 4538 3.570125 GGGAGAAACTGCTAAGCTTTGTT 59.430 43.478 3.20 2.71 0.00 2.83
4098 4552 0.178967 TTTGTTGGGATGCTGCCAGA 60.179 50.000 0.00 0.00 39.66 3.86
4171 4626 1.674962 GGAACGGACTACTACGCAGAT 59.325 52.381 0.00 0.00 0.00 2.90
4178 4633 2.099263 GACTACTACGCAGATGGCTTGA 59.901 50.000 0.00 0.00 41.67 3.02
4183 4638 0.035317 ACGCAGATGGCTTGAAGACA 59.965 50.000 1.85 1.85 37.84 3.41
4189 4644 4.326826 CAGATGGCTTGAAGACAAAGGTA 58.673 43.478 4.15 0.00 36.42 3.08
4194 4649 5.044846 ATGGCTTGAAGACAAAGGTATACCT 60.045 40.000 19.27 19.27 41.56 3.08
4233 4690 4.681978 AGCCGCACCTCGTGGTTC 62.682 66.667 6.39 0.60 46.05 3.62
4345 4804 2.610479 CGCCTTCACAAGCTTCACTCTA 60.610 50.000 0.00 0.00 0.00 2.43
4478 4938 4.854173 TGCTTGGTTTGCTCCAATATCTA 58.146 39.130 8.50 0.00 44.94 1.98
4488 4948 9.221775 GTTTGCTCCAATATCTAAAATACAACG 57.778 33.333 0.00 0.00 0.00 4.10
4494 4954 6.582295 CCAATATCTAAAATACAACGGCATGC 59.418 38.462 9.90 9.90 0.00 4.06
4498 4958 5.398169 TCTAAAATACAACGGCATGCTTTG 58.602 37.500 23.03 23.03 0.00 2.77
4505 4965 2.401583 ACGGCATGCTTTGTATCTCA 57.598 45.000 18.92 0.00 0.00 3.27
4514 4974 6.511444 GCATGCTTTGTATCTCAGAGATTCAC 60.511 42.308 18.38 11.71 36.20 3.18
4515 4975 6.041423 TGCTTTGTATCTCAGAGATTCACA 57.959 37.500 18.38 14.12 36.20 3.58
4527 4987 0.740737 GATTCACATGGGGCTTTCCG 59.259 55.000 0.00 0.00 36.01 4.30
4549 5009 6.771749 TCCGTGGGAAAAACAAGAGTAAAATA 59.228 34.615 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
173 174 4.706962 GGCATCCTTACAGTGGAAAAGAAT 59.293 41.667 0.00 0.00 37.13 2.40
287 288 5.050644 TCAACGAGTGAAGATAACGCTAA 57.949 39.130 0.00 0.00 31.51 3.09
580 583 4.868450 TTTAAATATGTCGCCCTGAACG 57.132 40.909 0.00 0.00 0.00 3.95
581 584 6.206498 GGATTTTAAATATGTCGCCCTGAAC 58.794 40.000 0.00 0.00 0.00 3.18
583 586 4.513692 CGGATTTTAAATATGTCGCCCTGA 59.486 41.667 0.00 0.00 0.00 3.86
584 587 4.513692 TCGGATTTTAAATATGTCGCCCTG 59.486 41.667 0.00 0.00 0.00 4.45
585 588 4.710324 TCGGATTTTAAATATGTCGCCCT 58.290 39.130 0.00 0.00 0.00 5.19
586 589 5.209977 GTTCGGATTTTAAATATGTCGCCC 58.790 41.667 0.00 0.00 0.00 6.13
589 592 6.349974 CGAACGTTCGGATTTTAAATATGTCG 59.650 38.462 36.53 10.69 46.30 4.35
606 609 0.372334 AACTGCACACACGAACGTTC 59.628 50.000 18.47 18.47 0.00 3.95
728 733 3.679502 GCAAAGACATTTTTAGCGGCAAT 59.320 39.130 1.45 0.00 0.00 3.56
769 774 5.045215 TCTTGCGGTTACAACTATAATCGG 58.955 41.667 0.89 0.00 38.76 4.18
836 841 1.741706 AGGAGTGATCAATTTGCAGCG 59.258 47.619 0.00 0.00 0.00 5.18
841 846 5.936372 TCAACAGAGAGGAGTGATCAATTTG 59.064 40.000 0.00 0.00 0.00 2.32
887 892 3.605634 TGGAGAACCGGTCATAAACATG 58.394 45.455 8.04 0.00 39.42 3.21
1066 1078 4.820173 TCTGCATTGCCATTTCTGATCTAG 59.180 41.667 6.12 0.00 0.00 2.43
1166 1199 4.039488 TGGTCTTTGTACCTGACATACGTT 59.961 41.667 0.00 0.00 40.44 3.99
1189 1222 2.270205 CCTGGATCGGCTGCTTGT 59.730 61.111 0.00 0.00 0.00 3.16
1348 1381 2.743131 AGGAAGGAAGGAAGGAAGGA 57.257 50.000 0.00 0.00 0.00 3.36
1350 1383 3.560239 GGTGAAGGAAGGAAGGAAGGAAG 60.560 52.174 0.00 0.00 0.00 3.46
1352 1385 1.985895 GGTGAAGGAAGGAAGGAAGGA 59.014 52.381 0.00 0.00 0.00 3.36
1354 1387 1.339151 CCGGTGAAGGAAGGAAGGAAG 60.339 57.143 0.00 0.00 0.00 3.46
1355 1388 0.690762 CCGGTGAAGGAAGGAAGGAA 59.309 55.000 0.00 0.00 0.00 3.36
1405 1438 2.096406 CACGCACACATACGCTGC 59.904 61.111 0.00 0.00 0.00 5.25
1413 1446 1.886542 AGAGAGTATGACACGCACACA 59.113 47.619 0.00 0.00 0.00 3.72
1510 1543 3.437795 GACGCCTTCTCCGACGGA 61.438 66.667 17.28 17.28 0.00 4.69
1601 1634 2.353607 GGCGTCGATGCCGTAGAG 60.354 66.667 31.62 0.00 46.75 2.43
1882 1944 4.511246 ATGCATGCCCCGTCCCAG 62.511 66.667 16.68 0.00 0.00 4.45
1883 1945 4.818863 CATGCATGCCCCGTCCCA 62.819 66.667 14.93 0.00 0.00 4.37
2113 2175 2.826738 ACCGTGTTGTTGGCGCTT 60.827 55.556 7.64 0.00 0.00 4.68
2118 2180 1.648720 CTGAGCACCGTGTTGTTGG 59.351 57.895 0.00 0.00 0.00 3.77
2198 2260 2.443632 AGTAGGAGATCATGACGGAGGA 59.556 50.000 0.00 0.00 0.00 3.71
2332 2397 9.232473 GTTCTTATATTTGTTTTCAGAGGGAGT 57.768 33.333 0.00 0.00 0.00 3.85
2355 2420 6.097915 TCCCTCCGTATGATCTAAATGTTC 57.902 41.667 0.00 0.00 0.00 3.18
2362 2427 5.545335 TGTAGTACTCCCTCCGTATGATCTA 59.455 44.000 0.00 0.00 0.00 1.98
2364 2429 4.649692 TGTAGTACTCCCTCCGTATGATC 58.350 47.826 0.00 0.00 0.00 2.92
2365 2430 4.719026 TGTAGTACTCCCTCCGTATGAT 57.281 45.455 0.00 0.00 0.00 2.45
2366 2431 4.719026 ATGTAGTACTCCCTCCGTATGA 57.281 45.455 0.00 0.00 0.00 2.15
2367 2432 4.583489 ACAATGTAGTACTCCCTCCGTATG 59.417 45.833 0.00 0.00 0.00 2.39
2370 2435 3.022406 GACAATGTAGTACTCCCTCCGT 58.978 50.000 0.00 0.00 0.00 4.69
2371 2436 3.021695 TGACAATGTAGTACTCCCTCCG 58.978 50.000 0.00 0.00 0.00 4.63
2372 2437 5.104900 ACAATGACAATGTAGTACTCCCTCC 60.105 44.000 0.00 0.00 0.00 4.30
2375 2440 5.730550 TGACAATGACAATGTAGTACTCCC 58.269 41.667 0.00 0.00 0.00 4.30
2415 2517 2.310577 GTACGTGTCAAGTACCGTGTC 58.689 52.381 15.74 0.00 38.70 3.67
2416 2518 1.334059 CGTACGTGTCAAGTACCGTGT 60.334 52.381 19.33 0.00 40.83 4.49
2417 2519 1.321016 CGTACGTGTCAAGTACCGTG 58.679 55.000 19.33 5.96 40.83 4.94
2418 2520 0.944386 ACGTACGTGTCAAGTACCGT 59.056 50.000 22.14 17.04 40.83 4.83
2419 2521 2.036556 AACGTACGTGTCAAGTACCG 57.963 50.000 23.57 16.55 40.83 4.02
2420 2522 2.902484 CGTAACGTACGTGTCAAGTACC 59.098 50.000 23.57 7.82 46.41 3.34
2449 2570 0.798776 GCCAGTCCGTGATCACAAAG 59.201 55.000 24.93 13.08 0.00 2.77
2976 3101 7.954788 ACTAAGAGATGTGTGAAAGAAAGAC 57.045 36.000 0.00 0.00 0.00 3.01
3012 3460 2.969306 CCTGCATCGTATTCGTACGTAC 59.031 50.000 15.90 15.90 43.31 3.67
3013 3461 2.602933 GCCTGCATCGTATTCGTACGTA 60.603 50.000 16.05 6.02 43.31 3.57
3014 3462 1.862815 GCCTGCATCGTATTCGTACGT 60.863 52.381 16.05 0.00 43.31 3.57
3015 3463 0.776451 GCCTGCATCGTATTCGTACG 59.224 55.000 9.53 9.53 44.11 3.67
3016 3464 1.521423 GTGCCTGCATCGTATTCGTAC 59.479 52.381 0.00 0.00 38.33 3.67
3017 3465 1.537348 GGTGCCTGCATCGTATTCGTA 60.537 52.381 0.00 0.00 38.33 3.43
3018 3466 0.810031 GGTGCCTGCATCGTATTCGT 60.810 55.000 0.00 0.00 38.33 3.85
3019 3467 0.809636 TGGTGCCTGCATCGTATTCG 60.810 55.000 0.00 0.00 38.55 3.34
3020 3468 0.657840 GTGGTGCCTGCATCGTATTC 59.342 55.000 0.00 0.00 0.00 1.75
3021 3469 0.748005 GGTGGTGCCTGCATCGTATT 60.748 55.000 0.00 0.00 0.00 1.89
3022 3470 1.153168 GGTGGTGCCTGCATCGTAT 60.153 57.895 0.00 0.00 0.00 3.06
3382 3830 3.721868 GAGAATCCGTGGTCCCCA 58.278 61.111 0.00 0.00 0.00 4.96
3530 3982 0.605589 CGATGAGGGGCTAGCTAAGG 59.394 60.000 15.72 0.00 0.00 2.69
3639 4091 1.471676 CGATTACCACTCAGGCCTCAC 60.472 57.143 0.00 0.00 43.14 3.51
3642 4094 0.824759 GTCGATTACCACTCAGGCCT 59.175 55.000 0.00 0.00 43.14 5.19
3643 4095 3.364277 GTCGATTACCACTCAGGCC 57.636 57.895 0.00 0.00 43.14 5.19
3652 4104 6.607735 TTAAATCATTTCCGGTCGATTACC 57.392 37.500 0.00 0.00 45.77 2.85
3655 4107 6.765989 TCTCATTAAATCATTTCCGGTCGATT 59.234 34.615 0.00 3.00 0.00 3.34
3657 4109 5.666462 TCTCATTAAATCATTTCCGGTCGA 58.334 37.500 0.00 0.00 0.00 4.20
3658 4110 5.984233 TCTCATTAAATCATTTCCGGTCG 57.016 39.130 0.00 0.00 0.00 4.79
3659 4111 6.542370 TCCTTCTCATTAAATCATTTCCGGTC 59.458 38.462 0.00 0.00 0.00 4.79
3661 4113 6.942532 TCCTTCTCATTAAATCATTTCCGG 57.057 37.500 0.00 0.00 0.00 5.14
3668 4120 9.519191 TCAAGTGAAATCCTTCTCATTAAATCA 57.481 29.630 0.00 0.00 32.33 2.57
3671 4123 8.668353 CGATCAAGTGAAATCCTTCTCATTAAA 58.332 33.333 0.00 0.00 32.33 1.52
3672 4124 7.201644 GCGATCAAGTGAAATCCTTCTCATTAA 60.202 37.037 0.00 0.00 32.33 1.40
3673 4125 6.258727 GCGATCAAGTGAAATCCTTCTCATTA 59.741 38.462 0.00 0.00 32.33 1.90
3677 4129 3.311048 GGCGATCAAGTGAAATCCTTCTC 59.689 47.826 0.00 0.00 32.33 2.87
3679 4131 3.274288 AGGCGATCAAGTGAAATCCTTC 58.726 45.455 0.00 0.00 0.00 3.46
3680 4132 3.356529 AGGCGATCAAGTGAAATCCTT 57.643 42.857 0.00 0.00 0.00 3.36
3681 4133 3.197766 TGTAGGCGATCAAGTGAAATCCT 59.802 43.478 0.00 4.67 0.00 3.24
3682 4134 3.309954 GTGTAGGCGATCAAGTGAAATCC 59.690 47.826 0.00 0.00 0.00 3.01
3683 4135 3.309954 GGTGTAGGCGATCAAGTGAAATC 59.690 47.826 0.00 0.00 0.00 2.17
3684 4136 3.270877 GGTGTAGGCGATCAAGTGAAAT 58.729 45.455 0.00 0.00 0.00 2.17
3685 4137 2.695359 GGTGTAGGCGATCAAGTGAAA 58.305 47.619 0.00 0.00 0.00 2.69
3686 4138 1.403647 CGGTGTAGGCGATCAAGTGAA 60.404 52.381 0.00 0.00 0.00 3.18
3687 4139 0.172578 CGGTGTAGGCGATCAAGTGA 59.827 55.000 0.00 0.00 0.00 3.41
3688 4140 1.421410 GCGGTGTAGGCGATCAAGTG 61.421 60.000 0.00 0.00 0.00 3.16
3689 4141 1.153628 GCGGTGTAGGCGATCAAGT 60.154 57.895 0.00 0.00 0.00 3.16
3690 4142 1.883084 GGCGGTGTAGGCGATCAAG 60.883 63.158 0.00 0.00 0.00 3.02
3743 4197 2.435805 TGGCATCACTAGAGATTGGGAC 59.564 50.000 0.00 0.00 0.00 4.46
3744 4198 2.435805 GTGGCATCACTAGAGATTGGGA 59.564 50.000 0.00 0.00 40.58 4.37
3745 4199 2.171237 TGTGGCATCACTAGAGATTGGG 59.829 50.000 0.00 0.00 43.94 4.12
3746 4200 3.118482 ACTGTGGCATCACTAGAGATTGG 60.118 47.826 0.00 0.00 43.94 3.16
3747 4201 4.134379 ACTGTGGCATCACTAGAGATTG 57.866 45.455 0.00 0.00 43.94 2.67
3760 4214 4.030216 TCAGGATAGACATAACTGTGGCA 58.970 43.478 0.00 0.00 35.14 4.92
3770 4224 8.032045 AGAAGTTGATGATTCAGGATAGACAT 57.968 34.615 0.00 0.00 32.27 3.06
3775 4229 6.715347 TCGAGAAGTTGATGATTCAGGATA 57.285 37.500 0.00 0.00 32.27 2.59
3780 4234 5.163612 ACTCGATCGAGAAGTTGATGATTCA 60.164 40.000 42.97 6.58 44.53 2.57
3785 4239 3.480308 CGAACTCGATCGAGAAGTTGATG 59.520 47.826 42.97 20.50 45.48 3.07
3786 4240 3.127203 ACGAACTCGATCGAGAAGTTGAT 59.873 43.478 42.97 21.83 45.48 2.57
3798 4252 5.179368 ACAAAATGATTGTGACGAACTCGAT 59.821 36.000 1.66 0.00 43.02 3.59
3799 4253 4.509970 ACAAAATGATTGTGACGAACTCGA 59.490 37.500 1.66 0.00 43.02 4.04
3800 4254 4.772434 ACAAAATGATTGTGACGAACTCG 58.228 39.130 1.66 0.00 46.33 4.18
3801 4255 5.621228 GTGACAAAATGATTGTGACGAACTC 59.379 40.000 1.66 0.00 31.96 3.01
3802 4256 5.296780 AGTGACAAAATGATTGTGACGAACT 59.703 36.000 1.66 0.00 40.59 3.01
3803 4257 5.510671 AGTGACAAAATGATTGTGACGAAC 58.489 37.500 1.66 0.00 40.59 3.95
3804 4258 5.749596 AGTGACAAAATGATTGTGACGAA 57.250 34.783 1.66 0.00 40.59 3.85
3805 4259 5.749596 AAGTGACAAAATGATTGTGACGA 57.250 34.783 1.66 0.00 40.59 4.20
3806 4260 6.074888 GGAAAAGTGACAAAATGATTGTGACG 60.075 38.462 1.66 0.00 40.59 4.35
3807 4261 6.756074 TGGAAAAGTGACAAAATGATTGTGAC 59.244 34.615 1.66 3.23 36.91 3.67
3808 4262 6.871844 TGGAAAAGTGACAAAATGATTGTGA 58.128 32.000 1.66 0.00 31.96 3.58
3809 4263 7.536895 TTGGAAAAGTGACAAAATGATTGTG 57.463 32.000 0.00 0.00 31.96 3.33
3810 4264 7.986320 TGATTGGAAAAGTGACAAAATGATTGT 59.014 29.630 0.00 0.00 34.97 2.71
3811 4265 8.367943 TGATTGGAAAAGTGACAAAATGATTG 57.632 30.769 0.00 0.00 0.00 2.67
3812 4266 9.563748 AATGATTGGAAAAGTGACAAAATGATT 57.436 25.926 0.00 0.00 0.00 2.57
3813 4267 9.563748 AAATGATTGGAAAAGTGACAAAATGAT 57.436 25.926 0.00 0.00 0.00 2.45
3814 4268 8.828644 CAAATGATTGGAAAAGTGACAAAATGA 58.171 29.630 0.00 0.00 32.69 2.57
3815 4269 7.588488 GCAAATGATTGGAAAAGTGACAAAATG 59.412 33.333 0.00 0.00 37.02 2.32
3816 4270 7.282675 TGCAAATGATTGGAAAAGTGACAAAAT 59.717 29.630 0.00 0.00 37.02 1.82
3817 4271 6.596888 TGCAAATGATTGGAAAAGTGACAAAA 59.403 30.769 0.00 0.00 37.02 2.44
3818 4272 6.111382 TGCAAATGATTGGAAAAGTGACAAA 58.889 32.000 0.00 0.00 37.02 2.83
3819 4273 5.668471 TGCAAATGATTGGAAAAGTGACAA 58.332 33.333 0.00 0.00 37.02 3.18
3820 4274 5.273674 TGCAAATGATTGGAAAAGTGACA 57.726 34.783 0.00 0.00 37.02 3.58
3821 4275 6.128472 GGAATGCAAATGATTGGAAAAGTGAC 60.128 38.462 0.00 0.00 40.47 3.67
3822 4276 5.933463 GGAATGCAAATGATTGGAAAAGTGA 59.067 36.000 0.00 0.00 40.47 3.41
3823 4277 5.163933 CGGAATGCAAATGATTGGAAAAGTG 60.164 40.000 0.00 0.00 40.47 3.16
3824 4278 4.931002 CGGAATGCAAATGATTGGAAAAGT 59.069 37.500 0.00 0.00 40.47 2.66
3825 4279 4.201744 GCGGAATGCAAATGATTGGAAAAG 60.202 41.667 0.00 0.00 45.45 2.27
3826 4280 3.683822 GCGGAATGCAAATGATTGGAAAA 59.316 39.130 0.00 0.00 45.45 2.29
3827 4281 3.260740 GCGGAATGCAAATGATTGGAAA 58.739 40.909 0.00 0.00 45.45 3.13
3828 4282 2.891112 GCGGAATGCAAATGATTGGAA 58.109 42.857 0.00 0.00 45.45 3.53
3829 4283 2.582728 GCGGAATGCAAATGATTGGA 57.417 45.000 0.00 0.00 45.45 3.53
3846 4300 0.179161 TTGTTTTTGGTCCGTGTGCG 60.179 50.000 0.00 0.00 37.95 5.34
3847 4301 1.923864 CTTTGTTTTTGGTCCGTGTGC 59.076 47.619 0.00 0.00 0.00 4.57
3848 4302 1.923864 GCTTTGTTTTTGGTCCGTGTG 59.076 47.619 0.00 0.00 0.00 3.82
3849 4303 1.822371 AGCTTTGTTTTTGGTCCGTGT 59.178 42.857 0.00 0.00 0.00 4.49
3850 4304 2.577449 AGCTTTGTTTTTGGTCCGTG 57.423 45.000 0.00 0.00 0.00 4.94
3851 4305 2.758423 AGAAGCTTTGTTTTTGGTCCGT 59.242 40.909 0.00 0.00 0.00 4.69
3852 4306 3.066760 AGAGAAGCTTTGTTTTTGGTCCG 59.933 43.478 0.00 0.00 0.00 4.79
3853 4307 4.655762 AGAGAAGCTTTGTTTTTGGTCC 57.344 40.909 0.00 0.00 0.00 4.46
3854 4308 5.410924 ACAAGAGAAGCTTTGTTTTTGGTC 58.589 37.500 0.00 0.00 33.60 4.02
3855 4309 5.405935 ACAAGAGAAGCTTTGTTTTTGGT 57.594 34.783 0.00 0.00 33.60 3.67
3856 4310 5.868801 TCAACAAGAGAAGCTTTGTTTTTGG 59.131 36.000 10.78 2.16 33.60 3.28
3857 4311 6.949578 TCAACAAGAGAAGCTTTGTTTTTG 57.050 33.333 10.78 9.25 33.60 2.44
3872 4326 3.500680 GCCGATTTTGGTACTCAACAAGA 59.499 43.478 0.00 0.00 34.67 3.02
3873 4327 3.502211 AGCCGATTTTGGTACTCAACAAG 59.498 43.478 0.00 0.00 34.67 3.16
3874 4328 3.482436 AGCCGATTTTGGTACTCAACAA 58.518 40.909 0.00 0.00 34.67 2.83
3875 4329 3.134574 AGCCGATTTTGGTACTCAACA 57.865 42.857 0.00 0.00 34.67 3.33
3876 4330 3.424433 CGAAGCCGATTTTGGTACTCAAC 60.424 47.826 0.00 0.00 38.22 3.18
3877 4331 2.739913 CGAAGCCGATTTTGGTACTCAA 59.260 45.455 0.00 0.00 38.22 3.02
3878 4332 2.343101 CGAAGCCGATTTTGGTACTCA 58.657 47.619 0.00 0.00 38.22 3.41
3879 4333 1.664151 CCGAAGCCGATTTTGGTACTC 59.336 52.381 0.00 0.00 38.22 2.59
3880 4334 1.276989 TCCGAAGCCGATTTTGGTACT 59.723 47.619 0.00 0.00 38.22 2.73
3881 4335 1.395954 GTCCGAAGCCGATTTTGGTAC 59.604 52.381 5.41 0.00 38.22 3.34
3882 4336 1.276989 AGTCCGAAGCCGATTTTGGTA 59.723 47.619 5.41 0.00 38.22 3.25
3883 4337 0.036306 AGTCCGAAGCCGATTTTGGT 59.964 50.000 5.41 0.00 38.22 3.67
3884 4338 0.727398 GAGTCCGAAGCCGATTTTGG 59.273 55.000 0.00 0.00 38.22 3.28
3885 4339 1.128692 GTGAGTCCGAAGCCGATTTTG 59.871 52.381 0.00 0.00 38.22 2.44
3886 4340 1.439679 GTGAGTCCGAAGCCGATTTT 58.560 50.000 0.00 0.00 38.22 1.82
3887 4341 0.391263 GGTGAGTCCGAAGCCGATTT 60.391 55.000 0.00 0.00 38.22 2.17
3888 4342 1.218316 GGTGAGTCCGAAGCCGATT 59.782 57.895 0.00 0.00 38.22 3.34
3889 4343 1.541310 TTGGTGAGTCCGAAGCCGAT 61.541 55.000 0.00 0.00 39.52 4.18
3890 4344 2.204461 TTGGTGAGTCCGAAGCCGA 61.204 57.895 0.00 0.00 39.52 5.54
3891 4345 2.027625 GTTGGTGAGTCCGAAGCCG 61.028 63.158 0.00 0.00 39.52 5.52
3892 4346 0.534203 TTGTTGGTGAGTCCGAAGCC 60.534 55.000 0.00 0.00 39.52 4.35
3893 4347 0.868406 CTTGTTGGTGAGTCCGAAGC 59.132 55.000 0.00 0.00 39.52 3.86
3894 4348 0.868406 GCTTGTTGGTGAGTCCGAAG 59.132 55.000 0.00 0.00 39.52 3.79
3895 4349 0.534203 GGCTTGTTGGTGAGTCCGAA 60.534 55.000 0.00 0.00 39.52 4.30
3896 4350 1.070786 GGCTTGTTGGTGAGTCCGA 59.929 57.895 0.00 0.00 39.52 4.55
3897 4351 2.317609 CGGCTTGTTGGTGAGTCCG 61.318 63.158 0.00 0.00 39.52 4.79
3898 4352 1.966451 CCGGCTTGTTGGTGAGTCC 60.966 63.158 0.00 0.00 0.00 3.85
3899 4353 2.617274 GCCGGCTTGTTGGTGAGTC 61.617 63.158 22.15 0.00 0.00 3.36
3900 4354 2.594592 GCCGGCTTGTTGGTGAGT 60.595 61.111 22.15 0.00 0.00 3.41
3901 4355 3.726517 CGCCGGCTTGTTGGTGAG 61.727 66.667 26.68 0.00 38.00 3.51
3904 4358 4.344865 ATCCGCCGGCTTGTTGGT 62.345 61.111 26.68 5.77 0.00 3.67
3905 4359 3.508840 GATCCGCCGGCTTGTTGG 61.509 66.667 26.68 18.19 0.00 3.77
3906 4360 3.864686 CGATCCGCCGGCTTGTTG 61.865 66.667 26.68 8.25 0.00 3.33
3923 4377 2.910688 TTGGGTGTATAGCTAGCTGC 57.089 50.000 27.68 16.64 43.29 5.25
3924 4378 4.039730 ACTCATTGGGTGTATAGCTAGCTG 59.960 45.833 27.68 7.42 0.00 4.24
3925 4379 4.227197 ACTCATTGGGTGTATAGCTAGCT 58.773 43.478 23.12 23.12 0.00 3.32
3926 4380 4.608948 ACTCATTGGGTGTATAGCTAGC 57.391 45.455 6.62 6.62 0.00 3.42
3927 4381 6.851222 CAAACTCATTGGGTGTATAGCTAG 57.149 41.667 0.00 0.00 35.27 3.42
3940 4394 9.622004 GCTATATGATGAAATCCAAACTCATTG 57.378 33.333 0.00 0.00 44.73 2.82
3941 4395 8.800332 GGCTATATGATGAAATCCAAACTCATT 58.200 33.333 0.00 0.00 44.73 2.57
3942 4396 8.168725 AGGCTATATGATGAAATCCAAACTCAT 58.831 33.333 0.00 0.00 44.73 2.90
3943 4397 7.446319 CAGGCTATATGATGAAATCCAAACTCA 59.554 37.037 0.00 0.00 44.73 3.41
3944 4398 7.663081 TCAGGCTATATGATGAAATCCAAACTC 59.337 37.037 0.00 0.00 44.73 3.01
3945 4399 7.520798 TCAGGCTATATGATGAAATCCAAACT 58.479 34.615 0.00 0.00 44.73 2.66
3946 4400 7.663081 TCTCAGGCTATATGATGAAATCCAAAC 59.337 37.037 0.00 0.00 44.73 2.93
3947 4401 7.748677 TCTCAGGCTATATGATGAAATCCAAA 58.251 34.615 0.00 0.00 44.73 3.28
3948 4402 7.320384 TCTCAGGCTATATGATGAAATCCAA 57.680 36.000 0.00 0.00 44.73 3.53
3949 4403 6.940430 TCTCAGGCTATATGATGAAATCCA 57.060 37.500 0.00 0.00 44.73 3.41
3950 4404 8.045507 TCAATCTCAGGCTATATGATGAAATCC 58.954 37.037 0.00 0.00 44.73 3.01
3951 4405 9.616156 ATCAATCTCAGGCTATATGATGAAATC 57.384 33.333 0.00 0.00 45.83 2.17
3952 4406 9.616156 GATCAATCTCAGGCTATATGATGAAAT 57.384 33.333 5.52 0.00 0.00 2.17
3953 4407 8.045507 GGATCAATCTCAGGCTATATGATGAAA 58.954 37.037 0.00 0.00 0.00 2.69
3954 4408 7.365384 GGGATCAATCTCAGGCTATATGATGAA 60.365 40.741 0.00 0.00 0.00 2.57
3955 4409 6.099413 GGGATCAATCTCAGGCTATATGATGA 59.901 42.308 0.00 0.00 0.00 2.92
3956 4410 6.099990 AGGGATCAATCTCAGGCTATATGATG 59.900 42.308 0.00 0.00 0.00 3.07
3957 4411 6.211272 AGGGATCAATCTCAGGCTATATGAT 58.789 40.000 0.00 0.00 0.00 2.45
3958 4412 5.597758 AGGGATCAATCTCAGGCTATATGA 58.402 41.667 0.00 0.00 0.00 2.15
3959 4413 5.954153 AGGGATCAATCTCAGGCTATATG 57.046 43.478 0.00 0.00 0.00 1.78
3960 4414 7.195474 ACTAAGGGATCAATCTCAGGCTATAT 58.805 38.462 0.00 0.00 0.00 0.86
3961 4415 6.565974 ACTAAGGGATCAATCTCAGGCTATA 58.434 40.000 0.00 0.00 0.00 1.31
3962 4416 5.410602 ACTAAGGGATCAATCTCAGGCTAT 58.589 41.667 0.00 0.00 0.00 2.97
3963 4417 4.820775 ACTAAGGGATCAATCTCAGGCTA 58.179 43.478 0.00 0.00 0.00 3.93
3964 4418 3.663198 ACTAAGGGATCAATCTCAGGCT 58.337 45.455 0.00 0.00 0.00 4.58
3965 4419 4.141620 TGAACTAAGGGATCAATCTCAGGC 60.142 45.833 0.00 0.00 0.00 4.85
3966 4420 5.620738 TGAACTAAGGGATCAATCTCAGG 57.379 43.478 0.00 0.00 0.00 3.86
3967 4421 7.387397 GCTAATGAACTAAGGGATCAATCTCAG 59.613 40.741 0.00 0.00 0.00 3.35
3968 4422 7.220030 GCTAATGAACTAAGGGATCAATCTCA 58.780 38.462 0.00 0.00 0.00 3.27
3969 4423 6.652900 GGCTAATGAACTAAGGGATCAATCTC 59.347 42.308 0.00 0.00 0.00 2.75
3970 4424 6.466470 GGGCTAATGAACTAAGGGATCAATCT 60.466 42.308 0.00 0.00 0.00 2.40
3971 4425 5.707764 GGGCTAATGAACTAAGGGATCAATC 59.292 44.000 0.00 0.00 0.00 2.67
3972 4426 5.458215 GGGGCTAATGAACTAAGGGATCAAT 60.458 44.000 0.00 0.00 0.00 2.57
3973 4427 4.141251 GGGGCTAATGAACTAAGGGATCAA 60.141 45.833 0.00 0.00 0.00 2.57
3974 4428 3.394606 GGGGCTAATGAACTAAGGGATCA 59.605 47.826 0.00 0.00 0.00 2.92
3975 4429 3.653352 AGGGGCTAATGAACTAAGGGATC 59.347 47.826 0.00 0.00 0.00 3.36
3976 4430 3.395941 CAGGGGCTAATGAACTAAGGGAT 59.604 47.826 0.00 0.00 0.00 3.85
3977 4431 2.777692 CAGGGGCTAATGAACTAAGGGA 59.222 50.000 0.00 0.00 0.00 4.20
3978 4432 2.749800 GCAGGGGCTAATGAACTAAGGG 60.750 54.545 0.00 0.00 36.96 3.95
3979 4433 2.092429 TGCAGGGGCTAATGAACTAAGG 60.092 50.000 0.00 0.00 41.91 2.69
3980 4434 2.945668 GTGCAGGGGCTAATGAACTAAG 59.054 50.000 0.00 0.00 41.91 2.18
3981 4435 2.679639 CGTGCAGGGGCTAATGAACTAA 60.680 50.000 0.00 0.00 41.91 2.24
3982 4436 1.134521 CGTGCAGGGGCTAATGAACTA 60.135 52.381 0.00 0.00 41.91 2.24
3983 4437 0.392998 CGTGCAGGGGCTAATGAACT 60.393 55.000 0.00 0.00 41.91 3.01
3984 4438 1.993369 GCGTGCAGGGGCTAATGAAC 61.993 60.000 8.72 0.00 41.91 3.18
3985 4439 1.748879 GCGTGCAGGGGCTAATGAA 60.749 57.895 8.72 0.00 41.91 2.57
3986 4440 2.124736 GCGTGCAGGGGCTAATGA 60.125 61.111 8.72 0.00 41.91 2.57
3987 4441 3.211963 GGCGTGCAGGGGCTAATG 61.212 66.667 8.72 0.00 41.91 1.90
3988 4442 4.506255 GGGCGTGCAGGGGCTAAT 62.506 66.667 8.72 0.00 41.91 1.73
4004 4458 5.826550 TATCGATCGATTTCCCACTCAGGG 61.827 50.000 33.46 0.00 46.14 4.45
4005 4459 1.409064 TCGATCGATTTCCCACTCAGG 59.591 52.381 15.15 0.00 37.03 3.86
4006 4460 2.871182 TCGATCGATTTCCCACTCAG 57.129 50.000 15.15 0.00 0.00 3.35
4007 4461 4.929819 TTATCGATCGATTTCCCACTCA 57.070 40.909 33.46 11.38 36.17 3.41
4008 4462 6.598753 TTTTTATCGATCGATTTCCCACTC 57.401 37.500 33.46 0.00 36.17 3.51
4029 4483 9.545105 TGACACAAAATCTTGCTCATTTATTTT 57.455 25.926 0.00 0.00 35.84 1.82
4030 4484 9.199982 CTGACACAAAATCTTGCTCATTTATTT 57.800 29.630 0.00 0.00 35.84 1.40
4031 4485 7.816031 CCTGACACAAAATCTTGCTCATTTATT 59.184 33.333 0.00 0.00 35.84 1.40
4032 4486 7.039504 ACCTGACACAAAATCTTGCTCATTTAT 60.040 33.333 0.00 0.00 35.84 1.40
4033 4487 6.265196 ACCTGACACAAAATCTTGCTCATTTA 59.735 34.615 0.00 0.00 35.84 1.40
4034 4488 5.069516 ACCTGACACAAAATCTTGCTCATTT 59.930 36.000 0.00 0.00 35.84 2.32
4035 4489 4.586001 ACCTGACACAAAATCTTGCTCATT 59.414 37.500 0.00 0.00 35.84 2.57
4036 4490 4.022589 CACCTGACACAAAATCTTGCTCAT 60.023 41.667 0.00 0.00 35.84 2.90
4037 4491 3.316029 CACCTGACACAAAATCTTGCTCA 59.684 43.478 0.00 0.00 35.84 4.26
4038 4492 3.316308 ACACCTGACACAAAATCTTGCTC 59.684 43.478 0.00 0.00 35.84 4.26
4039 4493 3.290710 ACACCTGACACAAAATCTTGCT 58.709 40.909 0.00 0.00 35.84 3.91
4040 4494 3.715628 ACACCTGACACAAAATCTTGC 57.284 42.857 0.00 0.00 35.84 4.01
4041 4495 4.362279 CCAACACCTGACACAAAATCTTG 58.638 43.478 0.00 0.00 38.61 3.02
4042 4496 3.384467 CCCAACACCTGACACAAAATCTT 59.616 43.478 0.00 0.00 0.00 2.40
4043 4497 2.958355 CCCAACACCTGACACAAAATCT 59.042 45.455 0.00 0.00 0.00 2.40
4044 4498 2.955660 TCCCAACACCTGACACAAAATC 59.044 45.455 0.00 0.00 0.00 2.17
4045 4499 2.958355 CTCCCAACACCTGACACAAAAT 59.042 45.455 0.00 0.00 0.00 1.82
4046 4500 2.025793 TCTCCCAACACCTGACACAAAA 60.026 45.455 0.00 0.00 0.00 2.44
4047 4501 1.562008 TCTCCCAACACCTGACACAAA 59.438 47.619 0.00 0.00 0.00 2.83
4048 4502 1.208706 TCTCCCAACACCTGACACAA 58.791 50.000 0.00 0.00 0.00 3.33
4049 4503 1.208706 TTCTCCCAACACCTGACACA 58.791 50.000 0.00 0.00 0.00 3.72
4050 4504 1.947456 GTTTCTCCCAACACCTGACAC 59.053 52.381 0.00 0.00 0.00 3.67
4051 4505 1.843851 AGTTTCTCCCAACACCTGACA 59.156 47.619 0.00 0.00 0.00 3.58
4056 4510 2.561478 TAGCAGTTTCTCCCAACACC 57.439 50.000 0.00 0.00 0.00 4.16
4077 4531 1.079612 GGCAGCATCCCAACAAAGC 60.080 57.895 0.00 0.00 0.00 3.51
4084 4538 1.225426 GATGTCTGGCAGCATCCCA 59.775 57.895 27.24 13.72 36.43 4.37
4098 4552 0.033504 GGGGATCATGTACGCGATGT 59.966 55.000 15.93 0.00 0.00 3.06
4128 4583 0.874390 GACGAATGAGCCAAGCAACA 59.126 50.000 0.00 0.00 0.00 3.33
4171 4626 4.288626 AGGTATACCTTTGTCTTCAAGCCA 59.711 41.667 19.27 0.00 46.09 4.75
4178 4633 3.780850 CCTCCCAGGTATACCTTTGTCTT 59.219 47.826 22.36 0.00 46.09 3.01
4183 4638 3.327439 CCATCCTCCCAGGTATACCTTT 58.673 50.000 22.36 0.00 46.09 3.11
4189 4644 1.464198 GCCCCATCCTCCCAGGTAT 60.464 63.158 0.00 0.00 36.53 2.73
4233 4690 2.867429 CCTCAAAATGTAGCCAAAGCG 58.133 47.619 0.00 0.00 46.67 4.68
4478 4938 3.988819 ACAAAGCATGCCGTTGTATTTT 58.011 36.364 27.27 12.22 42.95 1.82
4488 4948 3.801698 TCTCTGAGATACAAAGCATGCC 58.198 45.455 15.66 0.00 0.00 4.40
4494 4954 6.482641 CCCATGTGAATCTCTGAGATACAAAG 59.517 42.308 21.01 16.99 32.89 2.77
4498 4958 4.802248 GCCCCATGTGAATCTCTGAGATAC 60.802 50.000 19.82 15.35 32.89 2.24
4505 4965 2.357569 GGAAAGCCCCATGTGAATCTCT 60.358 50.000 0.00 0.00 0.00 3.10
4514 4974 2.755469 CCCACGGAAAGCCCCATG 60.755 66.667 0.00 0.00 0.00 3.66
4515 4975 2.087857 TTTCCCACGGAAAGCCCCAT 62.088 55.000 1.66 0.00 45.42 4.00
4527 4987 9.626045 CAGATATTTTACTCTTGTTTTTCCCAC 57.374 33.333 0.00 0.00 0.00 4.61
4549 5009 7.455953 TGCTTCCTCTATATAATGTCACCAGAT 59.544 37.037 0.00 0.00 0.00 2.90
4558 5018 7.108194 TGCTTGGATGCTTCCTCTATATAATG 58.892 38.462 18.67 1.15 43.07 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.