Multiple sequence alignment - TraesCS2B01G591800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G591800 chr2B 100.000 2453 0 0 1 2453 777144677 777142225 0.000000e+00 4530.0
1 TraesCS2B01G591800 chr2B 91.566 83 6 1 582 664 777143887 777143806 1.990000e-21 113.0
2 TraesCS2B01G591800 chr2B 91.566 83 6 1 791 872 777144096 777144014 1.990000e-21 113.0
3 TraesCS2B01G591800 chr2D 92.383 1733 93 13 687 2389 634155298 634153575 0.000000e+00 2433.0
4 TraesCS2B01G591800 chr2D 90.473 1312 62 26 440 1728 634149827 634148556 0.000000e+00 1672.0
5 TraesCS2B01G591800 chr2D 87.661 389 34 7 378 766 634155488 634155114 8.050000e-120 440.0
6 TraesCS2B01G591800 chr2D 86.644 292 18 13 3 293 634157291 634157020 1.100000e-78 303.0
7 TraesCS2B01G591800 chr2D 92.771 83 5 1 791 872 634149695 634149613 4.280000e-23 119.0
8 TraesCS2B01G591800 chr2D 86.916 107 6 3 378 483 634149951 634149852 1.990000e-21 113.0
9 TraesCS2B01G591800 chr2A 88.914 1768 125 42 440 2199 779621264 779622968 0.000000e+00 2113.0
10 TraesCS2B01G591800 chr2A 88.683 1785 104 30 440 2199 779509570 779511281 0.000000e+00 2087.0
11 TraesCS2B01G591800 chr2A 89.682 1541 115 22 687 2199 779432560 779434084 0.000000e+00 1925.0
12 TraesCS2B01G591800 chr2A 90.213 1410 95 12 816 2199 779529450 779530842 0.000000e+00 1799.0
13 TraesCS2B01G591800 chr2A 89.095 1403 82 22 820 2199 779341454 779342808 0.000000e+00 1677.0
14 TraesCS2B01G591800 chr2A 92.857 294 17 2 3 293 779338484 779338776 8.110000e-115 424.0
15 TraesCS2B01G591800 chr2A 91.864 295 20 2 3 293 779506415 779506709 2.270000e-110 409.0
16 TraesCS2B01G591800 chr2A 91.438 292 18 4 3 289 779618440 779618729 6.360000e-106 394.0
17 TraesCS2B01G591800 chr2A 88.199 322 27 6 440 761 779432429 779432739 8.280000e-100 374.0
18 TraesCS2B01G591800 chr2A 84.161 322 22 10 440 761 779529142 779529434 3.990000e-73 285.0
19 TraesCS2B01G591800 chr2A 92.771 83 5 1 791 872 779432560 779432642 4.280000e-23 119.0
20 TraesCS2B01G591800 chr2A 92.771 83 5 1 791 872 779529273 779529355 4.280000e-23 119.0
21 TraesCS2B01G591800 chr2A 86.916 107 6 3 378 483 779432317 779432416 1.990000e-21 113.0
22 TraesCS2B01G591800 chr2A 86.916 107 6 3 378 483 779529030 779529129 1.990000e-21 113.0
23 TraesCS2B01G591800 chr2A 92.208 77 6 0 568 644 779341281 779341357 2.580000e-20 110.0
24 TraesCS2B01G591800 chr2A 87.302 63 8 0 378 440 779508203 779508265 3.380000e-09 73.1
25 TraesCS2B01G591800 chr2A 92.000 50 4 0 378 427 779340188 779340237 1.220000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G591800 chr2B 777142225 777144677 2452 True 1585.333333 4530 94.377333 1 2453 3 chr2B.!!$R1 2452
1 TraesCS2B01G591800 chr2D 634148556 634157291 8735 True 846.666667 2433 89.474667 3 2389 6 chr2D.!!$R1 2386
2 TraesCS2B01G591800 chr2A 779618440 779622968 4528 False 1253.500000 2113 90.176000 3 2199 2 chr2A.!!$F5 2196
3 TraesCS2B01G591800 chr2A 779506415 779511281 4866 False 856.366667 2087 89.283000 3 2199 3 chr2A.!!$F3 2196
4 TraesCS2B01G591800 chr2A 779432317 779434084 1767 False 632.750000 1925 89.392000 378 2199 4 chr2A.!!$F2 1821
5 TraesCS2B01G591800 chr2A 779529030 779530842 1812 False 579.000000 1799 88.515250 378 2199 4 chr2A.!!$F4 1821
6 TraesCS2B01G591800 chr2A 779338484 779342808 4324 False 570.575000 1677 91.540000 3 2199 4 chr2A.!!$F1 2196

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
268 274 0.111253 ACCAGGAGGAGGCTGTTTTG 59.889 55.0 0.0 0.0 38.69 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1601 4584 0.165944 GATGAACGAACAACAGCGGG 59.834 55.0 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 2.787601 TGGAGAGTGTTGTGACGTAC 57.212 50.000 0.00 0.00 0.00 3.67
93 95 5.963176 TGCTTTCTTTGAATGTGATAGCA 57.037 34.783 0.00 0.00 40.50 3.49
244 250 2.734591 GACGGCACAGTCAGGTCA 59.265 61.111 0.00 0.00 40.65 4.02
249 255 1.300931 GCACAGTCAGGTCAGCGAA 60.301 57.895 0.00 0.00 0.00 4.70
267 273 0.853530 AACCAGGAGGAGGCTGTTTT 59.146 50.000 0.00 0.00 38.69 2.43
268 274 0.111253 ACCAGGAGGAGGCTGTTTTG 59.889 55.000 0.00 0.00 38.69 2.44
274 280 2.229062 GGAGGAGGCTGTTTTGTTAAGC 59.771 50.000 0.00 0.00 36.17 3.09
275 281 1.880027 AGGAGGCTGTTTTGTTAAGCG 59.120 47.619 0.00 0.00 37.83 4.68
296 1833 3.433274 CGCATTACTCAGCAAGTTCTTCA 59.567 43.478 0.00 0.00 39.55 3.02
303 1840 0.465460 AGCAAGTTCTTCAACCGGCA 60.465 50.000 0.00 0.00 35.51 5.69
392 1955 9.661563 AGTGTCGAATTGTTTAGTTGGATAATA 57.338 29.630 0.00 0.00 0.00 0.98
394 1957 9.661563 TGTCGAATTGTTTAGTTGGATAATAGT 57.338 29.630 0.00 0.00 0.00 2.12
428 1991 0.744874 TAGGAATCGGGAGTCTTGCG 59.255 55.000 0.00 0.00 0.00 4.85
463 3335 6.040504 AGTGATCTTATACTATTGGACACGCA 59.959 38.462 0.00 0.00 0.00 5.24
517 3389 3.981211 AGCAAGCAACCAACAATTAGTG 58.019 40.909 0.00 0.00 0.00 2.74
523 3395 6.017400 AGCAACCAACAATTAGTGATCAAG 57.983 37.500 0.00 0.00 0.00 3.02
540 3412 5.183713 TGATCAAGGGAGCAAACAATGTTAG 59.816 40.000 0.00 0.00 36.30 2.34
541 3413 3.255642 TCAAGGGAGCAAACAATGTTAGC 59.744 43.478 0.00 0.00 0.00 3.09
542 3414 3.160679 AGGGAGCAAACAATGTTAGCT 57.839 42.857 0.00 0.00 38.43 3.32
543 3415 2.821969 AGGGAGCAAACAATGTTAGCTG 59.178 45.455 0.00 0.00 35.36 4.24
544 3416 2.558359 GGGAGCAAACAATGTTAGCTGT 59.442 45.455 0.00 0.00 35.36 4.40
546 3418 4.501400 GGGAGCAAACAATGTTAGCTGTTT 60.501 41.667 0.00 0.00 44.53 2.83
547 3419 5.049828 GGAGCAAACAATGTTAGCTGTTTT 58.950 37.500 0.00 0.00 41.77 2.43
548 3420 5.175673 GGAGCAAACAATGTTAGCTGTTTTC 59.824 40.000 0.00 0.00 41.77 2.29
549 3421 5.659463 AGCAAACAATGTTAGCTGTTTTCA 58.341 33.333 0.00 0.00 41.77 2.69
550 3422 5.519927 AGCAAACAATGTTAGCTGTTTTCAC 59.480 36.000 0.00 0.00 41.77 3.18
551 3423 5.290643 GCAAACAATGTTAGCTGTTTTCACA 59.709 36.000 0.00 0.00 41.77 3.58
552 3424 6.018832 GCAAACAATGTTAGCTGTTTTCACAT 60.019 34.615 0.00 0.00 41.77 3.21
553 3425 7.465781 GCAAACAATGTTAGCTGTTTTCACATT 60.466 33.333 0.00 0.00 41.77 2.71
554 3426 9.029243 CAAACAATGTTAGCTGTTTTCACATTA 57.971 29.630 0.00 0.00 41.77 1.90
555 3427 8.801715 AACAATGTTAGCTGTTTTCACATTAG 57.198 30.769 0.00 0.71 31.76 1.73
595 3467 1.667510 ACACGCACATGATCACGCA 60.668 52.632 0.00 0.00 0.00 5.24
615 3488 4.666237 GCAAATGCTGGAAGACTTGTATC 58.334 43.478 0.00 0.00 38.21 2.24
649 3522 1.620739 ATCTGCTGACCACGCCATCT 61.621 55.000 0.00 0.00 0.00 2.90
653 3526 1.364626 GCTGACCACGCCATCTTCAG 61.365 60.000 0.00 0.00 37.37 3.02
715 3588 1.508088 GCAAATGCTGGAAGACCCG 59.492 57.895 0.00 0.00 37.93 5.28
716 3589 1.244019 GCAAATGCTGGAAGACCCGT 61.244 55.000 0.00 0.00 37.93 5.28
717 3590 1.948611 GCAAATGCTGGAAGACCCGTA 60.949 52.381 0.00 0.00 37.93 4.02
718 3591 2.643551 CAAATGCTGGAAGACCCGTAT 58.356 47.619 0.00 0.00 37.93 3.06
719 3592 3.016736 CAAATGCTGGAAGACCCGTATT 58.983 45.455 0.00 0.00 37.32 1.89
720 3593 3.366052 AATGCTGGAAGACCCGTATTT 57.634 42.857 0.00 0.00 33.66 1.40
721 3594 2.871096 TGCTGGAAGACCCGTATTTT 57.129 45.000 0.00 0.00 37.93 1.82
722 3595 2.432444 TGCTGGAAGACCCGTATTTTG 58.568 47.619 0.00 0.00 37.93 2.44
723 3596 2.224670 TGCTGGAAGACCCGTATTTTGT 60.225 45.455 0.00 0.00 37.93 2.83
724 3597 2.817844 GCTGGAAGACCCGTATTTTGTT 59.182 45.455 0.00 0.00 37.93 2.83
725 3598 3.254903 GCTGGAAGACCCGTATTTTGTTT 59.745 43.478 0.00 0.00 37.93 2.83
726 3599 4.794169 CTGGAAGACCCGTATTTTGTTTG 58.206 43.478 0.00 0.00 37.93 2.93
727 3600 4.462133 TGGAAGACCCGTATTTTGTTTGA 58.538 39.130 0.00 0.00 37.93 2.69
728 3601 4.276431 TGGAAGACCCGTATTTTGTTTGAC 59.724 41.667 0.00 0.00 37.93 3.18
729 3602 4.276431 GGAAGACCCGTATTTTGTTTGACA 59.724 41.667 0.00 0.00 0.00 3.58
730 3603 5.221087 GGAAGACCCGTATTTTGTTTGACAA 60.221 40.000 0.00 0.00 36.11 3.18
731 3604 6.399639 AAGACCCGTATTTTGTTTGACAAT 57.600 33.333 0.00 0.00 38.00 2.71
732 3605 6.399639 AGACCCGTATTTTGTTTGACAATT 57.600 33.333 0.00 0.00 38.00 2.32
733 3606 7.513371 AGACCCGTATTTTGTTTGACAATTA 57.487 32.000 0.00 0.00 38.00 1.40
734 3607 7.942990 AGACCCGTATTTTGTTTGACAATTAA 58.057 30.769 0.00 0.00 38.00 1.40
735 3608 8.581578 AGACCCGTATTTTGTTTGACAATTAAT 58.418 29.630 0.00 0.00 38.00 1.40
736 3609 8.751302 ACCCGTATTTTGTTTGACAATTAATC 57.249 30.769 0.00 0.00 38.00 1.75
737 3610 7.815549 ACCCGTATTTTGTTTGACAATTAATCC 59.184 33.333 0.00 0.00 38.00 3.01
738 3611 7.008810 CCCGTATTTTGTTTGACAATTAATCCG 59.991 37.037 0.00 0.00 38.00 4.18
739 3612 7.539366 CCGTATTTTGTTTGACAATTAATCCGT 59.461 33.333 0.00 0.00 38.00 4.69
740 3613 8.907685 CGTATTTTGTTTGACAATTAATCCGTT 58.092 29.630 0.00 0.00 38.00 4.44
742 3615 8.879342 ATTTTGTTTGACAATTAATCCGTTGA 57.121 26.923 0.00 0.00 38.00 3.18
743 3616 7.687005 TTTGTTTGACAATTAATCCGTTGAC 57.313 32.000 0.00 0.00 38.00 3.18
744 3617 5.764131 TGTTTGACAATTAATCCGTTGACC 58.236 37.500 0.00 0.00 0.00 4.02
745 3618 5.299531 TGTTTGACAATTAATCCGTTGACCA 59.700 36.000 0.00 0.00 0.00 4.02
746 3619 5.365403 TTGACAATTAATCCGTTGACCAC 57.635 39.130 0.00 0.00 0.00 4.16
754 3627 2.047274 CGTTGACCACGCCATCCT 60.047 61.111 0.00 0.00 43.37 3.24
755 3628 2.100631 CGTTGACCACGCCATCCTC 61.101 63.158 0.00 0.00 43.37 3.71
756 3629 1.296715 GTTGACCACGCCATCCTCT 59.703 57.895 0.00 0.00 0.00 3.69
757 3630 1.021390 GTTGACCACGCCATCCTCTG 61.021 60.000 0.00 0.00 0.00 3.35
758 3631 2.512515 GACCACGCCATCCTCTGC 60.513 66.667 0.00 0.00 0.00 4.26
759 3632 3.005539 ACCACGCCATCCTCTGCT 61.006 61.111 0.00 0.00 0.00 4.24
760 3633 2.202987 CCACGCCATCCTCTGCTC 60.203 66.667 0.00 0.00 0.00 4.26
761 3634 2.580815 CACGCCATCCTCTGCTCA 59.419 61.111 0.00 0.00 0.00 4.26
762 3635 1.812922 CACGCCATCCTCTGCTCAC 60.813 63.158 0.00 0.00 0.00 3.51
763 3636 1.986757 ACGCCATCCTCTGCTCACT 60.987 57.895 0.00 0.00 0.00 3.41
764 3637 1.227205 CGCCATCCTCTGCTCACTC 60.227 63.158 0.00 0.00 0.00 3.51
765 3638 1.674764 CGCCATCCTCTGCTCACTCT 61.675 60.000 0.00 0.00 0.00 3.24
766 3639 1.407936 GCCATCCTCTGCTCACTCTA 58.592 55.000 0.00 0.00 0.00 2.43
767 3640 1.759445 GCCATCCTCTGCTCACTCTAA 59.241 52.381 0.00 0.00 0.00 2.10
768 3641 2.224018 GCCATCCTCTGCTCACTCTAAG 60.224 54.545 0.00 0.00 0.00 2.18
769 3642 3.030291 CCATCCTCTGCTCACTCTAAGT 58.970 50.000 0.00 0.00 0.00 2.24
770 3643 3.450457 CCATCCTCTGCTCACTCTAAGTT 59.550 47.826 0.00 0.00 0.00 2.66
771 3644 4.646945 CCATCCTCTGCTCACTCTAAGTTA 59.353 45.833 0.00 0.00 0.00 2.24
772 3645 5.304101 CCATCCTCTGCTCACTCTAAGTTAT 59.696 44.000 0.00 0.00 0.00 1.89
773 3646 6.446318 CATCCTCTGCTCACTCTAAGTTATC 58.554 44.000 0.00 0.00 0.00 1.75
774 3647 4.890581 TCCTCTGCTCACTCTAAGTTATCC 59.109 45.833 0.00 0.00 0.00 2.59
775 3648 4.261405 CCTCTGCTCACTCTAAGTTATCCG 60.261 50.000 0.00 0.00 0.00 4.18
776 3649 4.524053 TCTGCTCACTCTAAGTTATCCGA 58.476 43.478 0.00 0.00 0.00 4.55
777 3650 5.133941 TCTGCTCACTCTAAGTTATCCGAT 58.866 41.667 0.00 0.00 0.00 4.18
778 3651 5.594725 TCTGCTCACTCTAAGTTATCCGATT 59.405 40.000 0.00 0.00 0.00 3.34
779 3652 5.592054 TGCTCACTCTAAGTTATCCGATTG 58.408 41.667 0.00 0.00 0.00 2.67
780 3653 4.446051 GCTCACTCTAAGTTATCCGATTGC 59.554 45.833 0.00 0.00 0.00 3.56
781 3654 5.592054 CTCACTCTAAGTTATCCGATTGCA 58.408 41.667 0.00 0.00 0.00 4.08
782 3655 5.348986 TCACTCTAAGTTATCCGATTGCAC 58.651 41.667 0.00 0.00 0.00 4.57
783 3656 4.508124 CACTCTAAGTTATCCGATTGCACC 59.492 45.833 0.00 0.00 0.00 5.01
784 3657 4.161565 ACTCTAAGTTATCCGATTGCACCA 59.838 41.667 0.00 0.00 0.00 4.17
785 3658 4.439057 TCTAAGTTATCCGATTGCACCAC 58.561 43.478 0.00 0.00 0.00 4.16
786 3659 1.651987 AGTTATCCGATTGCACCACG 58.348 50.000 0.00 0.00 0.00 4.94
787 3660 0.655733 GTTATCCGATTGCACCACGG 59.344 55.000 16.10 16.10 46.71 4.94
788 3661 0.250793 TTATCCGATTGCACCACGGT 59.749 50.000 19.74 12.43 45.71 4.83
789 3662 0.250793 TATCCGATTGCACCACGGTT 59.749 50.000 19.74 15.60 45.71 4.44
790 3663 1.305219 ATCCGATTGCACCACGGTTG 61.305 55.000 19.74 1.65 45.71 3.77
791 3664 2.126888 CGATTGCACCACGGTTGC 60.127 61.111 0.00 0.00 0.00 4.17
792 3665 2.902419 CGATTGCACCACGGTTGCA 61.902 57.895 3.47 3.47 36.72 4.08
794 3667 3.531283 TTGCACCACGGTTGCAAT 58.469 50.000 14.44 0.00 42.65 3.56
795 3668 1.067084 TTGCACCACGGTTGCAATG 59.933 52.632 14.44 0.58 42.65 2.82
796 3669 1.387295 TTGCACCACGGTTGCAATGA 61.387 50.000 14.44 0.00 42.65 2.57
797 3670 1.371635 GCACCACGGTTGCAATGAC 60.372 57.895 0.59 0.00 0.00 3.06
798 3671 1.285641 CACCACGGTTGCAATGACC 59.714 57.895 0.59 0.00 0.00 4.02
799 3672 1.152860 ACCACGGTTGCAATGACCA 60.153 52.632 0.59 0.00 36.99 4.02
800 3673 1.285641 CCACGGTTGCAATGACCAC 59.714 57.895 0.59 0.00 36.99 4.16
801 3674 1.451337 CCACGGTTGCAATGACCACA 61.451 55.000 0.59 0.00 36.99 4.17
802 3675 0.317770 CACGGTTGCAATGACCACAC 60.318 55.000 0.59 0.00 36.99 3.82
803 3676 0.749818 ACGGTTGCAATGACCACACA 60.750 50.000 0.59 0.00 36.99 3.72
804 3677 0.383590 CGGTTGCAATGACCACACAA 59.616 50.000 0.59 0.00 36.99 3.33
805 3678 1.202348 CGGTTGCAATGACCACACAAA 60.202 47.619 0.59 0.00 36.99 2.83
806 3679 2.545532 CGGTTGCAATGACCACACAAAT 60.546 45.455 0.59 0.00 36.99 2.32
807 3680 2.801679 GGTTGCAATGACCACACAAATG 59.198 45.455 0.59 0.00 37.14 2.32
808 3681 2.151881 TGCAATGACCACACAAATGC 57.848 45.000 0.00 0.00 37.27 3.56
809 3682 1.687660 TGCAATGACCACACAAATGCT 59.312 42.857 0.00 0.00 37.47 3.79
810 3683 2.063266 GCAATGACCACACAAATGCTG 58.937 47.619 0.00 0.00 35.41 4.41
811 3684 2.679450 CAATGACCACACAAATGCTGG 58.321 47.619 0.00 0.00 34.79 4.85
812 3685 2.291209 ATGACCACACAAATGCTGGA 57.709 45.000 5.05 0.00 33.60 3.86
813 3686 2.064434 TGACCACACAAATGCTGGAA 57.936 45.000 5.05 0.00 33.60 3.53
814 3687 2.382882 TGACCACACAAATGCTGGAAA 58.617 42.857 5.05 0.00 33.60 3.13
815 3688 2.762887 TGACCACACAAATGCTGGAAAA 59.237 40.909 5.05 0.00 33.60 2.29
816 3689 3.123050 GACCACACAAATGCTGGAAAAC 58.877 45.455 5.05 0.00 33.60 2.43
817 3690 2.765699 ACCACACAAATGCTGGAAAACT 59.234 40.909 5.05 0.00 33.60 2.66
818 3691 3.197549 ACCACACAAATGCTGGAAAACTT 59.802 39.130 5.05 0.00 33.60 2.66
823 3696 6.479660 CACACAAATGCTGGAAAACTTGTATT 59.520 34.615 0.00 0.00 0.00 1.89
835 3708 9.442047 TGGAAAACTTGTATTTTGTTTGACAAT 57.558 25.926 0.00 0.00 38.00 2.71
864 3820 2.270205 CCACGCCATCCTCAGCTT 59.730 61.111 0.00 0.00 0.00 3.74
878 3834 2.103432 CTCAGCTTGCTCTGATCATCCT 59.897 50.000 0.00 0.00 41.73 3.24
887 3843 3.382855 CTCTGATCATCCTGCTCTTTCG 58.617 50.000 0.00 0.00 0.00 3.46
938 3917 2.030540 CCTCACATTTGTGCTCACCTTG 60.031 50.000 5.81 0.00 45.25 3.61
954 3933 2.644299 ACCTTGATCACACCATCCTTGA 59.356 45.455 0.00 0.00 0.00 3.02
964 3943 6.192044 TCACACCATCCTTGATACTACTACA 58.808 40.000 0.00 0.00 0.00 2.74
965 3944 6.321435 TCACACCATCCTTGATACTACTACAG 59.679 42.308 0.00 0.00 0.00 2.74
966 3945 6.096987 CACACCATCCTTGATACTACTACAGT 59.903 42.308 0.00 0.00 41.62 3.55
967 3946 7.284716 CACACCATCCTTGATACTACTACAGTA 59.715 40.741 0.00 0.00 43.89 2.74
968 3947 7.284944 ACACCATCCTTGATACTACTACAGTAC 59.715 40.741 0.00 0.00 42.56 2.73
969 3948 7.502895 CACCATCCTTGATACTACTACAGTACT 59.497 40.741 0.00 0.00 42.56 2.73
970 3949 8.721479 ACCATCCTTGATACTACTACAGTACTA 58.279 37.037 0.00 0.00 42.56 1.82
971 3950 9.001542 CCATCCTTGATACTACTACAGTACTAC 57.998 40.741 0.00 0.00 42.56 2.73
972 3951 9.001542 CATCCTTGATACTACTACAGTACTACC 57.998 40.741 0.00 0.00 42.56 3.18
988 3968 0.973496 TACCAGCGCCATCCTACACA 60.973 55.000 2.29 0.00 0.00 3.72
1098 4078 2.614983 GGTCACGACAGGAGATAGAGAC 59.385 54.545 0.00 0.00 0.00 3.36
1128 4108 0.447011 CCGACGCCCGTATATCTCTC 59.553 60.000 0.00 0.00 36.31 3.20
1164 4144 4.824289 CAAATGGCAAGAAGCTGGTTATT 58.176 39.130 0.00 0.00 44.79 1.40
1165 4145 4.460948 AATGGCAAGAAGCTGGTTATTG 57.539 40.909 19.32 19.32 44.79 1.90
1291 4271 3.232213 TGTTGCTCGAGTCTAATGGTC 57.768 47.619 15.13 0.00 0.00 4.02
1401 4381 0.036164 TGAATAGGTGGCTTGCACGT 59.964 50.000 0.00 0.00 0.00 4.49
1507 4487 2.229543 TCTTACATGCGTGAACGGTACT 59.770 45.455 14.17 0.00 40.23 2.73
1601 4584 8.883789 TGTATTGTACTTTAATAAAACAGCGC 57.116 30.769 0.00 0.00 0.00 5.92
1603 4586 5.299582 TGTACTTTAATAAAACAGCGCCC 57.700 39.130 2.29 0.00 0.00 6.13
1604 4587 3.481112 ACTTTAATAAAACAGCGCCCG 57.519 42.857 2.29 0.00 0.00 6.13
1889 4878 9.689976 GGATGCAGCTATTAGACTACATATATG 57.310 37.037 11.29 11.29 0.00 1.78
1915 4904 6.134535 ACTGTTCCACATAAGTCCCAAATA 57.865 37.500 0.00 0.00 0.00 1.40
1916 4905 6.548321 ACTGTTCCACATAAGTCCCAAATAA 58.452 36.000 0.00 0.00 0.00 1.40
1942 4931 6.528537 TCATTCGGACATGGAATTTCAATT 57.471 33.333 0.00 0.00 31.98 2.32
2002 4991 1.004560 CCACACACACGCTCTCCAT 60.005 57.895 0.00 0.00 0.00 3.41
2020 5009 3.376859 TCCATAAACCTTGTGCATAAGCG 59.623 43.478 17.08 12.61 46.23 4.68
2057 5046 3.941188 CCAGCACCACGGACAGGT 61.941 66.667 0.00 0.00 40.85 4.00
2117 5106 3.133542 TCACATCACCAGGATCTAGCTTG 59.866 47.826 0.00 0.00 32.57 4.01
2200 5189 3.551846 TCTCCTTGACCACCTCAAAAAC 58.448 45.455 0.00 0.00 38.47 2.43
2219 5208 1.979693 GGATCGGGAGGCTAGCGAT 60.980 63.158 9.00 5.15 0.00 4.58
2222 5211 0.827925 ATCGGGAGGCTAGCGATTCA 60.828 55.000 9.00 0.00 0.00 2.57
2223 5212 0.827925 TCGGGAGGCTAGCGATTCAT 60.828 55.000 9.00 0.00 0.00 2.57
2243 5232 0.315568 GACCAGAAGAGCACTCGTGT 59.684 55.000 0.00 0.00 34.09 4.49
2292 5281 4.111053 GACGCCCCCTTTCTCCCC 62.111 72.222 0.00 0.00 0.00 4.81
2300 5289 2.437359 CTTTCTCCCCAGCCGCAG 60.437 66.667 0.00 0.00 0.00 5.18
2355 5344 1.372087 GCAAAGTCCGGATGGCTCTG 61.372 60.000 7.81 0.00 34.14 3.35
2358 5347 0.539051 AAGTCCGGATGGCTCTGAAG 59.461 55.000 7.81 0.00 34.14 3.02
2370 5359 0.037882 CTCTGAAGAAGGCAGCGACA 60.038 55.000 0.00 0.00 33.45 4.35
2390 5379 4.168291 CCCCTTCTCCGGCTGCTC 62.168 72.222 0.00 0.00 0.00 4.26
2391 5380 4.521062 CCCTTCTCCGGCTGCTCG 62.521 72.222 0.00 1.31 0.00 5.03
2402 5391 3.716006 CTGCTCGGCGTTGGTGTG 61.716 66.667 6.85 0.00 0.00 3.82
2422 5411 1.522355 CGGCTGCGATCAATGGACT 60.522 57.895 0.00 0.00 0.00 3.85
2429 5418 1.603172 GCGATCAATGGACTAGGGACG 60.603 57.143 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.233476 TGTGAACACAAAGTTGTACTCGATC 59.767 40.000 5.11 0.00 41.51 3.69
1 2 5.006358 GTGTGAACACAAAGTTGTACTCGAT 59.994 40.000 9.24 0.00 45.75 3.59
55 56 6.899393 AGAAAGCATCATTCAAGTAAACCA 57.101 33.333 0.00 0.00 0.00 3.67
56 57 7.867403 TCAAAGAAAGCATCATTCAAGTAAACC 59.133 33.333 0.00 0.00 0.00 3.27
93 95 9.976511 CTGCTTTGAATTTGATGGTGAATATAT 57.023 29.630 0.00 0.00 0.00 0.86
114 116 2.503895 AAGTTGCTATCAGCCTGCTT 57.496 45.000 0.00 0.00 41.51 3.91
244 250 3.394836 GCCTCCTCCTGGTTCGCT 61.395 66.667 0.00 0.00 34.23 4.93
249 255 0.111253 CAAAACAGCCTCCTCCTGGT 59.889 55.000 0.00 0.00 34.65 4.00
267 273 2.694213 TGCTGAGTAATGCGCTTAACA 58.306 42.857 9.73 7.93 0.00 2.41
268 274 3.125316 ACTTGCTGAGTAATGCGCTTAAC 59.875 43.478 9.73 3.50 36.65 2.01
274 280 3.433274 TGAAGAACTTGCTGAGTAATGCG 59.567 43.478 0.00 0.00 37.72 4.73
275 281 5.149977 GTTGAAGAACTTGCTGAGTAATGC 58.850 41.667 0.00 0.00 37.72 3.56
303 1840 3.775654 GGTACGCCAGGCTGCTCT 61.776 66.667 10.54 0.00 34.09 4.09
353 1890 2.698803 TCGACACTTGGGACATTCATG 58.301 47.619 0.00 0.00 39.30 3.07
357 1894 3.486383 ACAATTCGACACTTGGGACATT 58.514 40.909 6.53 0.00 39.30 2.71
365 1902 6.877611 ATCCAACTAAACAATTCGACACTT 57.122 33.333 0.00 0.00 0.00 3.16
366 1903 7.972832 TTATCCAACTAAACAATTCGACACT 57.027 32.000 0.00 0.00 0.00 3.55
392 1955 4.708576 TCCTAGAGATATGGACGACACT 57.291 45.455 0.00 0.00 0.00 3.55
394 1957 4.695928 CGATTCCTAGAGATATGGACGACA 59.304 45.833 0.00 0.00 0.00 4.35
428 1991 5.088026 AGTATAAGATCACTTAGGCCTCCC 58.912 45.833 9.68 0.00 41.12 4.30
463 3335 8.573885 CATGCCTGATTGAATGTACTAAATGAT 58.426 33.333 0.00 0.00 0.00 2.45
517 3389 4.525912 AACATTGTTTGCTCCCTTGATC 57.474 40.909 0.00 0.00 0.00 2.92
523 3395 2.558359 ACAGCTAACATTGTTTGCTCCC 59.442 45.455 27.86 6.81 0.00 4.30
540 3412 4.418392 CATCAGGCTAATGTGAAAACAGC 58.582 43.478 0.00 0.00 0.00 4.40
541 3413 4.082625 TGCATCAGGCTAATGTGAAAACAG 60.083 41.667 0.00 0.00 45.15 3.16
542 3414 3.825585 TGCATCAGGCTAATGTGAAAACA 59.174 39.130 0.00 0.00 45.15 2.83
543 3415 4.439305 TGCATCAGGCTAATGTGAAAAC 57.561 40.909 0.00 0.00 45.15 2.43
544 3416 4.463539 ACATGCATCAGGCTAATGTGAAAA 59.536 37.500 0.00 0.00 45.15 2.29
546 3418 3.623703 ACATGCATCAGGCTAATGTGAA 58.376 40.909 0.00 0.00 45.15 3.18
547 3419 3.286329 ACATGCATCAGGCTAATGTGA 57.714 42.857 0.00 0.00 45.15 3.58
548 3420 3.349488 CACATGCATCAGGCTAATGTG 57.651 47.619 0.00 0.90 44.99 3.21
549 3421 1.679680 GCACATGCATCAGGCTAATGT 59.320 47.619 0.00 0.00 45.15 2.71
550 3422 2.417339 GCACATGCATCAGGCTAATG 57.583 50.000 0.00 0.00 45.15 1.90
595 3467 6.006449 ACAAGATACAAGTCTTCCAGCATTT 58.994 36.000 0.00 0.00 36.33 2.32
615 3488 6.583806 GGTCAGCAGATTAATTGTCAAACAAG 59.416 38.462 0.00 0.00 41.94 3.16
649 3522 3.020274 AGATAACTCAGAGCGAGCTGAA 58.980 45.455 0.84 0.00 46.63 3.02
653 3526 3.641437 ATCAGATAACTCAGAGCGAGC 57.359 47.619 0.00 0.00 46.63 5.03
716 3589 9.967346 TCAACGGATTAATTGTCAAACAAAATA 57.033 25.926 0.00 0.00 41.96 1.40
717 3590 8.760569 GTCAACGGATTAATTGTCAAACAAAAT 58.239 29.630 0.00 0.00 41.96 1.82
718 3591 7.222999 GGTCAACGGATTAATTGTCAAACAAAA 59.777 33.333 0.00 0.00 41.96 2.44
719 3592 6.697892 GGTCAACGGATTAATTGTCAAACAAA 59.302 34.615 0.00 0.00 41.96 2.83
720 3593 6.183360 TGGTCAACGGATTAATTGTCAAACAA 60.183 34.615 0.00 0.00 42.95 2.83
721 3594 5.299531 TGGTCAACGGATTAATTGTCAAACA 59.700 36.000 0.00 0.00 0.00 2.83
722 3595 5.627780 GTGGTCAACGGATTAATTGTCAAAC 59.372 40.000 0.00 0.00 0.00 2.93
723 3596 5.764131 GTGGTCAACGGATTAATTGTCAAA 58.236 37.500 0.00 0.00 0.00 2.69
724 3597 5.365403 GTGGTCAACGGATTAATTGTCAA 57.635 39.130 0.00 0.00 0.00 3.18
738 3611 1.021390 CAGAGGATGGCGTGGTCAAC 61.021 60.000 0.00 0.00 0.00 3.18
739 3612 1.296392 CAGAGGATGGCGTGGTCAA 59.704 57.895 0.00 0.00 0.00 3.18
740 3613 2.981302 CAGAGGATGGCGTGGTCA 59.019 61.111 0.00 0.00 0.00 4.02
741 3614 2.512515 GCAGAGGATGGCGTGGTC 60.513 66.667 0.00 0.00 0.00 4.02
742 3615 3.005539 AGCAGAGGATGGCGTGGT 61.006 61.111 0.00 0.00 34.54 4.16
743 3616 2.202987 GAGCAGAGGATGGCGTGG 60.203 66.667 0.00 0.00 34.54 4.94
744 3617 1.812922 GTGAGCAGAGGATGGCGTG 60.813 63.158 0.00 0.00 34.54 5.34
745 3618 1.954362 GAGTGAGCAGAGGATGGCGT 61.954 60.000 0.00 0.00 34.54 5.68
746 3619 1.227205 GAGTGAGCAGAGGATGGCG 60.227 63.158 0.00 0.00 34.54 5.69
747 3620 1.407936 TAGAGTGAGCAGAGGATGGC 58.592 55.000 0.00 0.00 0.00 4.40
748 3621 3.030291 ACTTAGAGTGAGCAGAGGATGG 58.970 50.000 0.00 0.00 0.00 3.51
749 3622 4.734398 AACTTAGAGTGAGCAGAGGATG 57.266 45.455 0.00 0.00 0.00 3.51
750 3623 5.538433 GGATAACTTAGAGTGAGCAGAGGAT 59.462 44.000 0.00 0.00 0.00 3.24
751 3624 4.890581 GGATAACTTAGAGTGAGCAGAGGA 59.109 45.833 0.00 0.00 0.00 3.71
752 3625 4.261405 CGGATAACTTAGAGTGAGCAGAGG 60.261 50.000 0.00 0.00 0.00 3.69
753 3626 4.576873 TCGGATAACTTAGAGTGAGCAGAG 59.423 45.833 0.00 0.00 0.00 3.35
754 3627 4.524053 TCGGATAACTTAGAGTGAGCAGA 58.476 43.478 0.00 0.00 0.00 4.26
755 3628 4.902443 TCGGATAACTTAGAGTGAGCAG 57.098 45.455 0.00 0.00 0.00 4.24
756 3629 5.592054 CAATCGGATAACTTAGAGTGAGCA 58.408 41.667 0.00 0.00 31.30 4.26
757 3630 4.446051 GCAATCGGATAACTTAGAGTGAGC 59.554 45.833 0.00 0.00 31.30 4.26
758 3631 5.460419 GTGCAATCGGATAACTTAGAGTGAG 59.540 44.000 0.00 0.00 31.30 3.51
759 3632 5.348986 GTGCAATCGGATAACTTAGAGTGA 58.651 41.667 0.00 0.00 31.30 3.41
760 3633 4.508124 GGTGCAATCGGATAACTTAGAGTG 59.492 45.833 0.00 0.00 0.00 3.51
761 3634 4.161565 TGGTGCAATCGGATAACTTAGAGT 59.838 41.667 0.00 0.00 0.00 3.24
762 3635 4.508124 GTGGTGCAATCGGATAACTTAGAG 59.492 45.833 0.00 0.00 0.00 2.43
763 3636 4.439057 GTGGTGCAATCGGATAACTTAGA 58.561 43.478 0.00 0.00 0.00 2.10
764 3637 3.245284 CGTGGTGCAATCGGATAACTTAG 59.755 47.826 0.00 0.00 0.00 2.18
765 3638 3.191669 CGTGGTGCAATCGGATAACTTA 58.808 45.455 0.00 0.00 0.00 2.24
766 3639 2.006888 CGTGGTGCAATCGGATAACTT 58.993 47.619 0.00 0.00 0.00 2.66
767 3640 1.651987 CGTGGTGCAATCGGATAACT 58.348 50.000 0.00 0.00 0.00 2.24
768 3641 0.655733 CCGTGGTGCAATCGGATAAC 59.344 55.000 16.90 0.00 46.05 1.89
769 3642 0.250793 ACCGTGGTGCAATCGGATAA 59.749 50.000 24.96 0.00 46.05 1.75
770 3643 0.250793 AACCGTGGTGCAATCGGATA 59.749 50.000 24.96 0.00 46.05 2.59
771 3644 1.002624 AACCGTGGTGCAATCGGAT 60.003 52.632 24.96 14.77 46.05 4.18
772 3645 1.963855 CAACCGTGGTGCAATCGGA 60.964 57.895 24.96 0.00 46.05 4.55
774 3647 2.126888 GCAACCGTGGTGCAATCG 60.127 61.111 8.77 0.00 0.00 3.34
775 3648 1.361993 TTGCAACCGTGGTGCAATC 59.638 52.632 20.73 0.00 42.65 2.67
776 3649 3.531283 TTGCAACCGTGGTGCAAT 58.469 50.000 20.73 0.00 42.65 3.56
778 3651 1.825622 TCATTGCAACCGTGGTGCA 60.826 52.632 11.85 11.85 36.72 4.57
779 3652 1.371635 GTCATTGCAACCGTGGTGC 60.372 57.895 0.00 6.94 0.00 5.01
780 3653 1.285641 GGTCATTGCAACCGTGGTG 59.714 57.895 0.00 0.00 0.00 4.17
781 3654 1.152860 TGGTCATTGCAACCGTGGT 60.153 52.632 0.00 0.00 39.81 4.16
782 3655 1.285641 GTGGTCATTGCAACCGTGG 59.714 57.895 0.00 0.00 39.81 4.94
783 3656 0.317770 GTGTGGTCATTGCAACCGTG 60.318 55.000 0.00 0.00 39.81 4.94
784 3657 0.749818 TGTGTGGTCATTGCAACCGT 60.750 50.000 0.00 0.00 39.81 4.83
785 3658 0.383590 TTGTGTGGTCATTGCAACCG 59.616 50.000 0.00 0.00 39.81 4.44
786 3659 2.593346 TTTGTGTGGTCATTGCAACC 57.407 45.000 0.00 0.00 37.31 3.77
787 3660 2.221517 GCATTTGTGTGGTCATTGCAAC 59.778 45.455 0.00 0.00 31.61 4.17
788 3661 2.102757 AGCATTTGTGTGGTCATTGCAA 59.897 40.909 0.00 0.00 32.79 4.08
789 3662 1.687660 AGCATTTGTGTGGTCATTGCA 59.312 42.857 0.00 0.00 32.79 4.08
790 3663 2.063266 CAGCATTTGTGTGGTCATTGC 58.937 47.619 0.00 0.00 0.00 3.56
791 3664 2.296752 TCCAGCATTTGTGTGGTCATTG 59.703 45.455 0.00 0.00 32.73 2.82
792 3665 2.596346 TCCAGCATTTGTGTGGTCATT 58.404 42.857 0.00 0.00 32.73 2.57
793 3666 2.291209 TCCAGCATTTGTGTGGTCAT 57.709 45.000 0.00 0.00 32.73 3.06
794 3667 2.064434 TTCCAGCATTTGTGTGGTCA 57.936 45.000 0.00 0.00 32.73 4.02
795 3668 3.123050 GTTTTCCAGCATTTGTGTGGTC 58.877 45.455 0.00 0.00 32.73 4.02
796 3669 2.765699 AGTTTTCCAGCATTTGTGTGGT 59.234 40.909 0.00 0.00 32.73 4.16
797 3670 3.457610 AGTTTTCCAGCATTTGTGTGG 57.542 42.857 0.00 0.00 0.00 4.17
798 3671 4.183101 ACAAGTTTTCCAGCATTTGTGTG 58.817 39.130 0.00 0.00 0.00 3.82
799 3672 4.470334 ACAAGTTTTCCAGCATTTGTGT 57.530 36.364 0.00 0.00 0.00 3.72
800 3673 7.481275 AAATACAAGTTTTCCAGCATTTGTG 57.519 32.000 0.00 0.00 31.84 3.33
801 3674 7.552330 ACAAAATACAAGTTTTCCAGCATTTGT 59.448 29.630 0.00 0.00 32.93 2.83
802 3675 7.918643 ACAAAATACAAGTTTTCCAGCATTTG 58.081 30.769 0.00 0.00 0.00 2.32
803 3676 8.504812 AACAAAATACAAGTTTTCCAGCATTT 57.495 26.923 0.00 0.00 0.00 2.32
804 3677 8.397148 CAAACAAAATACAAGTTTTCCAGCATT 58.603 29.630 0.00 0.00 33.54 3.56
805 3678 7.768120 TCAAACAAAATACAAGTTTTCCAGCAT 59.232 29.630 0.00 0.00 33.54 3.79
806 3679 7.064016 GTCAAACAAAATACAAGTTTTCCAGCA 59.936 33.333 0.00 0.00 33.54 4.41
807 3680 7.064016 TGTCAAACAAAATACAAGTTTTCCAGC 59.936 33.333 0.00 0.00 33.54 4.85
808 3681 8.472683 TGTCAAACAAAATACAAGTTTTCCAG 57.527 30.769 0.00 0.00 33.54 3.86
809 3682 8.833231 TTGTCAAACAAAATACAAGTTTTCCA 57.167 26.923 0.00 0.00 34.76 3.53
818 3691 9.979578 AGCAGATTAATTGTCAAACAAAATACA 57.020 25.926 0.00 0.00 41.96 2.29
823 3696 6.922957 GGTCAGCAGATTAATTGTCAAACAAA 59.077 34.615 0.00 0.00 41.96 2.83
835 3708 0.323302 TGGCGTGGTCAGCAGATTAA 59.677 50.000 0.00 0.00 36.08 1.40
843 3716 1.153489 CTGAGGATGGCGTGGTCAG 60.153 63.158 1.57 1.57 0.00 3.51
878 3834 2.606961 CGTGCCAAGCGAAAGAGCA 61.607 57.895 0.00 0.00 40.15 4.26
887 3843 0.373716 GCTGTATGTACGTGCCAAGC 59.626 55.000 0.00 0.00 0.00 4.01
938 3917 6.412362 AGTAGTATCAAGGATGGTGTGATC 57.588 41.667 0.00 0.00 34.01 2.92
954 3933 4.754114 GCGCTGGTAGTACTGTAGTAGTAT 59.246 45.833 5.39 0.00 43.44 2.12
964 3943 0.397254 AGGATGGCGCTGGTAGTACT 60.397 55.000 7.64 0.00 0.00 2.73
965 3944 1.000496 GTAGGATGGCGCTGGTAGTAC 60.000 57.143 7.64 0.00 0.00 2.73
966 3945 1.325355 GTAGGATGGCGCTGGTAGTA 58.675 55.000 7.64 0.00 0.00 1.82
967 3946 0.686441 TGTAGGATGGCGCTGGTAGT 60.686 55.000 7.64 0.00 0.00 2.73
968 3947 0.249489 GTGTAGGATGGCGCTGGTAG 60.249 60.000 7.64 0.00 0.00 3.18
969 3948 0.973496 TGTGTAGGATGGCGCTGGTA 60.973 55.000 7.64 0.00 0.00 3.25
970 3949 2.290287 TGTGTAGGATGGCGCTGGT 61.290 57.895 7.64 0.00 0.00 4.00
971 3950 1.815421 GTGTGTAGGATGGCGCTGG 60.815 63.158 7.64 0.00 0.00 4.85
972 3951 1.079197 TGTGTGTAGGATGGCGCTG 60.079 57.895 7.64 0.00 0.00 5.18
988 3968 3.446442 AATCTTCATTCTGGCCAGTGT 57.554 42.857 31.58 18.61 0.00 3.55
1128 4108 0.167470 CATTTGCGGTGCTCACTGAG 59.833 55.000 12.65 1.21 40.06 3.35
1164 4144 0.401738 CCCAAGGTTTCAGGCTCTCA 59.598 55.000 0.00 0.00 0.00 3.27
1165 4145 0.322906 CCCCAAGGTTTCAGGCTCTC 60.323 60.000 0.00 0.00 0.00 3.20
1291 4271 1.338655 CCAACCGGGTTTGTTACCTTG 59.661 52.381 10.33 0.00 46.86 3.61
1401 4381 1.940883 GCGTACCCGGTGACTCATCA 61.941 60.000 0.00 0.00 33.68 3.07
1473 4453 7.013529 CACGCATGTAAGATGATGTATTCATG 58.986 38.462 0.00 0.00 45.29 3.07
1507 4487 0.888736 CCACAAACATCACGGCCAGA 60.889 55.000 2.24 0.00 0.00 3.86
1601 4584 0.165944 GATGAACGAACAACAGCGGG 59.834 55.000 0.00 0.00 0.00 6.13
1603 4586 2.949714 AAGATGAACGAACAACAGCG 57.050 45.000 0.00 0.00 0.00 5.18
1604 4587 3.300009 CCAAAGATGAACGAACAACAGC 58.700 45.455 0.00 0.00 0.00 4.40
1714 4697 7.711772 TCATTGTCGTTGTTTCCTTAAAGTAGA 59.288 33.333 0.00 0.00 0.00 2.59
1915 4904 5.476599 TGAAATTCCATGTCCGAATGAACTT 59.523 36.000 0.00 0.00 30.39 2.66
1916 4905 5.009631 TGAAATTCCATGTCCGAATGAACT 58.990 37.500 0.00 0.00 30.39 3.01
2002 4991 1.129624 CGCGCTTATGCACAAGGTTTA 59.870 47.619 6.89 0.00 39.64 2.01
2057 5046 8.061857 GCGATGACGATTAATAAGATGTTGAAA 58.938 33.333 0.00 0.00 42.66 2.69
2117 5106 1.119574 TGGAGGAGTATAAGCGGGGC 61.120 60.000 0.00 0.00 0.00 5.80
2200 5189 4.044484 CGCTAGCCTCCCGATCCG 62.044 72.222 9.66 0.00 0.00 4.18
2219 5208 2.353109 CGAGTGCTCTTCTGGTCATGAA 60.353 50.000 0.00 0.00 0.00 2.57
2222 5211 1.067283 CACGAGTGCTCTTCTGGTCAT 60.067 52.381 0.00 0.00 0.00 3.06
2223 5212 0.315251 CACGAGTGCTCTTCTGGTCA 59.685 55.000 0.00 0.00 0.00 4.02
2258 5247 4.293648 CGTGTGAGGTGGCGGTGA 62.294 66.667 0.00 0.00 0.00 4.02
2260 5249 4.295119 GTCGTGTGAGGTGGCGGT 62.295 66.667 0.00 0.00 0.00 5.68
2283 5272 2.437359 CTGCGGCTGGGGAGAAAG 60.437 66.667 0.00 0.00 0.00 2.62
2300 5289 2.509561 GCGACGAGGGAAGGAAGC 60.510 66.667 0.00 0.00 0.00 3.86
2355 5344 2.394563 GCCTGTCGCTGCCTTCTTC 61.395 63.158 0.00 0.00 0.00 2.87
2385 5374 3.716006 CACACCAACGCCGAGCAG 61.716 66.667 0.00 0.00 0.00 4.24
2399 5388 3.974835 ATTGATCGCAGCCGCCACA 62.975 57.895 0.00 0.00 33.11 4.17
2400 5389 3.204827 ATTGATCGCAGCCGCCAC 61.205 61.111 0.00 0.00 33.11 5.01
2401 5390 3.204119 CATTGATCGCAGCCGCCA 61.204 61.111 0.00 0.00 33.11 5.69
2402 5391 3.957535 CCATTGATCGCAGCCGCC 61.958 66.667 0.00 0.00 33.11 6.13
2403 5392 2.896854 TCCATTGATCGCAGCCGC 60.897 61.111 0.00 0.00 0.00 6.53
2404 5393 0.249447 TAGTCCATTGATCGCAGCCG 60.249 55.000 0.00 0.00 0.00 5.52
2405 5394 1.506493 CTAGTCCATTGATCGCAGCC 58.494 55.000 0.00 0.00 0.00 4.85
2406 5395 1.506493 CCTAGTCCATTGATCGCAGC 58.494 55.000 0.00 0.00 0.00 5.25
2407 5396 1.688735 TCCCTAGTCCATTGATCGCAG 59.311 52.381 0.00 0.00 0.00 5.18
2408 5397 1.412710 GTCCCTAGTCCATTGATCGCA 59.587 52.381 0.00 0.00 0.00 5.10
2409 5398 1.603172 CGTCCCTAGTCCATTGATCGC 60.603 57.143 0.00 0.00 0.00 4.58
2410 5399 1.000163 CCGTCCCTAGTCCATTGATCG 60.000 57.143 0.00 0.00 0.00 3.69
2429 5418 1.971695 CCTCACCAAAAGGACCGCC 60.972 63.158 0.00 0.00 35.83 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.