Multiple sequence alignment - TraesCS2B01G591700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G591700 chr2B 100.000 6199 0 0 1 6199 777119345 777113147 0.000000e+00 11448
1 TraesCS2B01G591700 chr2B 85.591 465 52 10 1327 1781 741573507 741573966 2.020000e-129 473
2 TraesCS2B01G591700 chr2B 84.516 465 53 12 1327 1781 765532545 765533000 5.700000e-120 442
3 TraesCS2B01G591700 chr2B 98.387 124 1 1 2738 2861 549197047 549196925 3.760000e-52 217
4 TraesCS2B01G591700 chr2B 97.321 112 3 0 5643 5754 777001658 777001547 2.280000e-44 191
5 TraesCS2B01G591700 chr2B 91.538 130 11 0 1652 1781 52700945 52700816 4.940000e-41 180
6 TraesCS2B01G591700 chr2D 91.023 2952 168 55 2856 5754 634125466 634122559 0.000000e+00 3893
7 TraesCS2B01G591700 chr2D 91.972 1831 113 18 36 1853 634128189 634126380 0.000000e+00 2536
8 TraesCS2B01G591700 chr2D 94.673 901 38 6 1843 2739 634126361 634125467 0.000000e+00 1389
9 TraesCS2B01G591700 chr2D 92.617 149 7 2 6048 6192 634121909 634121761 1.750000e-50 211
10 TraesCS2B01G591700 chr2D 92.079 101 3 2 5621 5721 634073785 634073690 3.010000e-28 137
11 TraesCS2B01G591700 chr2A 91.112 2419 146 29 2857 5209 779644274 779646689 0.000000e+00 3212
12 TraesCS2B01G591700 chr2A 88.032 1738 123 29 509 2214 779642004 779643688 0.000000e+00 1978
13 TraesCS2B01G591700 chr2A 94.528 530 23 2 2216 2745 779643754 779644277 0.000000e+00 813
14 TraesCS2B01G591700 chr2A 92.814 334 18 4 5861 6192 779647475 779647804 4.350000e-131 479
15 TraesCS2B01G591700 chr2A 83.556 523 45 21 1 513 779641485 779641976 9.480000e-123 451
16 TraesCS2B01G591700 chr2A 88.053 226 10 5 5303 5517 779646737 779646956 1.030000e-62 252
17 TraesCS2B01G591700 chr2A 94.545 110 6 0 5642 5751 779647067 779647176 2.970000e-38 171
18 TraesCS2B01G591700 chr2A 81.026 195 21 12 5964 6155 779657196 779657377 2.330000e-29 141
19 TraesCS2B01G591700 chr2A 95.402 87 4 0 5635 5721 779654127 779654213 8.380000e-29 139
20 TraesCS2B01G591700 chr2A 88.889 63 4 1 5861 5923 779657118 779657177 2.400000e-09 75
21 TraesCS2B01G591700 chr6A 85.439 467 54 9 1327 1781 92797874 92798338 2.020000e-129 473
22 TraesCS2B01G591700 chr4A 85.225 467 54 9 1327 1781 27767287 27767750 3.380000e-127 466
23 TraesCS2B01G591700 chr4A 85.463 454 54 6 1339 1781 717014256 717013804 4.380000e-126 462
24 TraesCS2B01G591700 chr6D 98.425 127 2 0 2734 2860 293082480 293082606 2.250000e-54 224
25 TraesCS2B01G591700 chr1B 97.656 128 2 1 2739 2865 137651559 137651686 1.050000e-52 219
26 TraesCS2B01G591700 chr1B 93.382 136 7 2 2724 2858 454622708 454622842 3.790000e-47 200
27 TraesCS2B01G591700 chrUn 99.167 120 1 0 2739 2858 9343596 9343715 3.760000e-52 217
28 TraesCS2B01G591700 chr6B 98.347 121 2 0 2741 2861 84756385 84756505 4.870000e-51 213
29 TraesCS2B01G591700 chr5B 97.581 124 3 0 2735 2858 446529622 446529745 4.870000e-51 213
30 TraesCS2B01G591700 chr5B 88.387 155 15 3 1627 1781 669629423 669629574 3.820000e-42 183
31 TraesCS2B01G591700 chr5D 94.737 133 6 1 2737 2869 213359377 213359508 8.150000e-49 206
32 TraesCS2B01G591700 chr4B 93.431 137 7 2 2723 2858 422040235 422040370 1.050000e-47 202
33 TraesCS2B01G591700 chr7A 80.370 270 46 6 3199 3465 725129107 725129372 1.360000e-46 198
34 TraesCS2B01G591700 chr7A 85.161 155 18 5 2292 2442 725128473 725128626 2.990000e-33 154


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G591700 chr2B 777113147 777119345 6198 True 11448.000000 11448 100.000000 1 6199 1 chr2B.!!$R4 6198
1 TraesCS2B01G591700 chr2D 634121761 634128189 6428 True 2007.250000 3893 92.571250 36 6192 4 chr2D.!!$R2 6156
2 TraesCS2B01G591700 chr2A 779641485 779647804 6319 False 1050.857143 3212 90.377143 1 6192 7 chr2A.!!$F1 6191

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
452 469 0.107081 TTGGTTTCGACACCCACGAT 59.893 50.0 17.87 0.0 39.45 3.73 F
571 624 0.453390 CCAATCTTTTCGAGGGCTGC 59.547 55.0 0.00 0.0 0.00 5.25 F
1955 2049 0.755327 GTGGGTGGTGGATTATGGGC 60.755 60.0 0.00 0.0 0.00 5.36 F
2758 2940 0.032813 ATTACTCCCTCCGTCCGGAA 60.033 55.0 5.23 0.0 44.66 4.30 F
2761 2943 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.0 5.23 0.0 44.66 1.40 F
4591 4797 0.167908 GCGACAACATTGCGATTGGA 59.832 50.0 11.02 0.0 32.28 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1853 1943 1.418637 TCCGCCAGGACAGTTAGTTTT 59.581 47.619 0.00 0.0 42.75 2.43 R
2567 2749 3.181461 ACACTGGCATATAGTTGCTCTCC 60.181 47.826 0.00 0.0 42.38 3.71 R
2835 3017 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.0 44.66 2.12 R
4035 4218 0.104855 GCGATGAGGTCTACCATGCA 59.895 55.000 1.26 0.0 38.89 3.96 R
4831 5043 0.329596 ATGGAGCTCAAACTGGGGAC 59.670 55.000 17.19 0.0 0.00 4.46 R
5831 6510 0.036952 CGTGAAGACCCATGTGAGCT 60.037 55.000 0.00 0.0 0.00 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 112 4.493747 CTTCCGTCGCCGTCCCTC 62.494 72.222 0.00 0.00 0.00 4.30
115 117 3.745803 GTCGCCGTCCCTCTCGTT 61.746 66.667 0.00 0.00 0.00 3.85
127 129 2.320367 CCTCTCGTTGTTTCTCTCGTG 58.680 52.381 0.00 0.00 0.00 4.35
130 132 2.617308 TCTCGTTGTTTCTCTCGTGTCT 59.383 45.455 0.00 0.00 0.00 3.41
132 134 4.274214 TCTCGTTGTTTCTCTCGTGTCTTA 59.726 41.667 0.00 0.00 0.00 2.10
133 135 4.534168 TCGTTGTTTCTCTCGTGTCTTAG 58.466 43.478 0.00 0.00 0.00 2.18
225 231 1.076332 CGTGGGTTTGTAGTAGCTGC 58.924 55.000 0.00 0.00 0.00 5.25
302 311 4.821589 CTTGGCGCCGGTCTCCTC 62.822 72.222 23.90 0.00 0.00 3.71
336 353 1.446966 GCGAGTTCCTCTGGAGCAC 60.447 63.158 3.47 0.00 35.33 4.40
346 363 1.467734 CTCTGGAGCACTTTGTGATGC 59.532 52.381 1.52 1.10 40.50 3.91
351 368 2.543578 GCACTTTGTGATGCTCGGA 58.456 52.632 1.52 0.00 38.84 4.55
352 369 0.445436 GCACTTTGTGATGCTCGGAG 59.555 55.000 0.00 0.00 38.84 4.63
440 457 6.429624 GCTCCATTTTGTCAATTTTGGTTTC 58.570 36.000 8.15 0.00 0.00 2.78
442 459 6.341316 TCCATTTTGTCAATTTTGGTTTCGA 58.659 32.000 8.15 0.00 0.00 3.71
443 460 6.256757 TCCATTTTGTCAATTTTGGTTTCGAC 59.743 34.615 8.15 0.00 0.00 4.20
444 461 6.036517 CCATTTTGTCAATTTTGGTTTCGACA 59.963 34.615 0.00 0.00 0.00 4.35
445 462 6.396459 TTTTGTCAATTTTGGTTTCGACAC 57.604 33.333 0.00 0.00 33.41 3.67
447 464 3.181485 TGTCAATTTTGGTTTCGACACCC 60.181 43.478 17.87 2.80 35.73 4.61
448 465 3.024547 TCAATTTTGGTTTCGACACCCA 58.975 40.909 17.87 4.20 35.73 4.51
449 466 3.120041 CAATTTTGGTTTCGACACCCAC 58.880 45.455 17.87 0.00 35.73 4.61
450 467 0.733729 TTTTGGTTTCGACACCCACG 59.266 50.000 17.87 0.00 35.73 4.94
451 468 0.107800 TTTGGTTTCGACACCCACGA 60.108 50.000 17.87 0.00 35.73 4.35
452 469 0.107081 TTGGTTTCGACACCCACGAT 59.893 50.000 17.87 0.00 39.45 3.73
454 471 1.067425 TGGTTTCGACACCCACGATAG 60.067 52.381 17.87 0.00 39.45 2.08
455 472 0.997196 GTTTCGACACCCACGATAGC 59.003 55.000 0.00 0.00 39.45 2.97
457 474 1.753930 TTCGACACCCACGATAGCTA 58.246 50.000 0.00 0.00 39.45 3.32
458 475 1.977056 TCGACACCCACGATAGCTAT 58.023 50.000 5.76 5.76 42.67 2.97
459 476 2.304092 TCGACACCCACGATAGCTATT 58.696 47.619 7.87 0.00 42.67 1.73
460 477 2.034179 TCGACACCCACGATAGCTATTG 59.966 50.000 17.99 17.99 42.67 1.90
468 489 1.344763 ACGATAGCTATTGGGCTCACC 59.655 52.381 22.42 0.24 42.97 4.02
472 493 1.220749 GCTATTGGGCTCACCGTCA 59.779 57.895 0.00 0.00 44.64 4.35
499 520 6.998074 ACAGTGTTCATTCTTCAGTTATCCAA 59.002 34.615 0.00 0.00 0.00 3.53
502 523 6.749118 GTGTTCATTCTTCAGTTATCCAATGC 59.251 38.462 0.00 0.00 0.00 3.56
517 538 2.549754 CCAATGCTAGCAATAGTTCCGG 59.450 50.000 23.54 5.82 0.00 5.14
531 584 1.740025 GTTCCGGCTTCTGATTTCTGG 59.260 52.381 0.00 0.00 0.00 3.86
550 603 2.759985 GTCCTCTGTGACCCCTTCA 58.240 57.895 0.00 0.00 0.00 3.02
562 615 2.493675 GACCCCTTCAGCCAATCTTTTC 59.506 50.000 0.00 0.00 0.00 2.29
571 624 0.453390 CCAATCTTTTCGAGGGCTGC 59.547 55.000 0.00 0.00 0.00 5.25
599 652 1.095228 ACTATGGGATGTTTGGCGCG 61.095 55.000 0.00 0.00 0.00 6.86
636 689 6.425504 GTTTCATTCATTCTTCAGCTATCGG 58.574 40.000 0.00 0.00 0.00 4.18
654 707 1.068055 CGGTGTTAGCAGTAGTTCCGT 60.068 52.381 0.00 0.00 33.39 4.69
701 754 3.570540 TGTTTGGACATTGGACATTGGA 58.429 40.909 0.12 0.00 0.00 3.53
706 759 3.011595 TGGACATTGGACATTGGAAGGAT 59.988 43.478 0.12 0.00 0.00 3.24
715 768 3.573967 GACATTGGAAGGATTGTTGGTGT 59.426 43.478 0.00 0.00 0.00 4.16
795 848 2.496899 TTCCTTGGGACTGATTCAGC 57.503 50.000 13.64 6.57 34.37 4.26
796 849 1.661463 TCCTTGGGACTGATTCAGCT 58.339 50.000 13.64 1.29 34.37 4.24
799 854 1.558756 CTTGGGACTGATTCAGCTCCT 59.441 52.381 23.08 5.15 34.50 3.69
818 873 5.129368 TCCTGGAGCAAATTATTAGCCTT 57.871 39.130 0.00 0.00 0.00 4.35
819 874 6.260700 TCCTGGAGCAAATTATTAGCCTTA 57.739 37.500 0.00 0.00 0.00 2.69
825 880 8.196771 TGGAGCAAATTATTAGCCTTATGTTTG 58.803 33.333 0.00 0.00 0.00 2.93
874 929 5.565592 TCTGCATTTATAAGCTGTGGTTG 57.434 39.130 0.00 0.00 0.00 3.77
879 934 2.710096 TATAAGCTGTGGTTGGGCTC 57.290 50.000 0.00 0.00 35.06 4.70
887 942 1.327303 GTGGTTGGGCTCATGTTTCA 58.673 50.000 0.00 0.00 0.00 2.69
897 952 2.912967 GCTCATGTTTCATGCTGTTTCG 59.087 45.455 5.03 0.00 0.00 3.46
1038 1093 1.079073 CTGGTTGGGCTGGGGAAAT 59.921 57.895 0.00 0.00 0.00 2.17
1050 1105 3.877735 GCTGGGGAAATACATGGTGTCTT 60.878 47.826 0.00 0.00 0.00 3.01
1076 1131 7.870588 TTTCTTCTTCTTTACTACGAGAAGC 57.129 36.000 7.95 0.00 45.33 3.86
1078 1133 6.978338 TCTTCTTCTTTACTACGAGAAGCAA 58.022 36.000 7.95 4.10 45.33 3.91
1083 1138 6.627690 TCTTTACTACGAGAAGCAATTTCG 57.372 37.500 0.00 1.70 40.86 3.46
1091 1146 6.963049 ACGAGAAGCAATTTCGTATAAACT 57.037 33.333 6.36 0.00 44.79 2.66
1092 1147 9.229784 CTACGAGAAGCAATTTCGTATAAACTA 57.770 33.333 13.20 0.00 45.36 2.24
1099 1154 5.521372 GCAATTTCGTATAAACTACCCGTCT 59.479 40.000 0.00 0.00 0.00 4.18
1188 1247 1.887707 CGAGGGGCCGCATAGAAAC 60.888 63.158 23.39 3.32 0.00 2.78
1236 1295 1.327460 TCGCAGCAAAATGATACGAGC 59.673 47.619 0.00 0.00 0.00 5.03
1278 1337 1.153353 GCGTTCTTCGGGATTTGTCA 58.847 50.000 0.00 0.00 40.26 3.58
1294 1353 8.739972 GGGATTTGTCACTGTATTTCAATAACT 58.260 33.333 0.00 0.00 0.00 2.24
1441 1500 7.584122 TCTCTCCTGAAATATAGCTAAACGT 57.416 36.000 0.00 0.00 0.00 3.99
1487 1546 4.245660 TGTACTGGCAAGATCTCTTTTCG 58.754 43.478 0.00 0.00 33.11 3.46
1887 1981 2.232452 CTGGCGGATTATAGCTAGCAGT 59.768 50.000 18.83 7.32 35.32 4.40
1892 1986 4.750098 GCGGATTATAGCTAGCAGTTCAAA 59.250 41.667 18.83 2.58 0.00 2.69
1955 2049 0.755327 GTGGGTGGTGGATTATGGGC 60.755 60.000 0.00 0.00 0.00 5.36
2015 2109 5.405571 ACACAGTAACTTAGCAGATTGAACG 59.594 40.000 0.00 0.00 0.00 3.95
2069 2163 5.606749 TGAAATATGCTTCCTCTAGGCCTTA 59.393 40.000 12.58 0.00 34.44 2.69
2155 2271 9.905713 TTCATATAATGGACTAGCTGTTCTTTT 57.094 29.630 0.00 0.00 0.00 2.27
2165 2281 7.114866 ACTAGCTGTTCTTTTATAGGAGGTC 57.885 40.000 0.00 0.00 0.00 3.85
2389 2569 6.870971 TTGCGAAAAGGTAATCTTTGTAGT 57.129 33.333 0.00 0.00 44.30 2.73
2390 2570 6.236017 TGCGAAAAGGTAATCTTTGTAGTG 57.764 37.500 0.00 0.00 44.30 2.74
2513 2693 8.564574 TCATGTGGAACTTTTGTAGTTGATAAC 58.435 33.333 0.00 0.00 47.00 1.89
2516 2696 7.442969 TGTGGAACTTTTGTAGTTGATAACGAT 59.557 33.333 0.00 0.00 47.00 3.73
2517 2697 8.287503 GTGGAACTTTTGTAGTTGATAACGATT 58.712 33.333 0.00 0.00 47.00 3.34
2557 2739 9.624373 ATCTTTAAGCATAATCAGTGAATCTGT 57.376 29.630 0.00 0.00 43.97 3.41
2580 2762 7.791029 TGTTTATCATGTGGAGAGCAACTATA 58.209 34.615 0.00 0.00 0.00 1.31
2626 2808 3.047877 GGTTCGTGGACCTTGGCG 61.048 66.667 0.00 0.00 36.73 5.69
2633 2815 1.090052 GTGGACCTTGGCGCAGATAC 61.090 60.000 10.83 0.00 0.00 2.24
2662 2844 5.356751 TGGTCCAATGTTACTATCAATGTGC 59.643 40.000 0.00 0.00 0.00 4.57
2673 2855 4.818546 ACTATCAATGTGCCAATCTACTGC 59.181 41.667 0.00 0.00 0.00 4.40
2743 2925 8.447787 CTGCAAGTGTTGTGGTTATTTATTAC 57.552 34.615 0.00 0.00 0.00 1.89
2744 2926 8.172352 TGCAAGTGTTGTGGTTATTTATTACT 57.828 30.769 0.00 0.00 0.00 2.24
2745 2927 8.293867 TGCAAGTGTTGTGGTTATTTATTACTC 58.706 33.333 0.00 0.00 0.00 2.59
2746 2928 7.753580 GCAAGTGTTGTGGTTATTTATTACTCC 59.246 37.037 0.00 0.00 0.00 3.85
2747 2929 7.933215 AGTGTTGTGGTTATTTATTACTCCC 57.067 36.000 0.00 0.00 0.00 4.30
2748 2930 7.696017 AGTGTTGTGGTTATTTATTACTCCCT 58.304 34.615 0.00 0.00 0.00 4.20
2749 2931 7.827729 AGTGTTGTGGTTATTTATTACTCCCTC 59.172 37.037 0.00 0.00 0.00 4.30
2750 2932 7.066645 GTGTTGTGGTTATTTATTACTCCCTCC 59.933 40.741 0.00 0.00 0.00 4.30
2751 2933 5.920903 TGTGGTTATTTATTACTCCCTCCG 58.079 41.667 0.00 0.00 0.00 4.63
2752 2934 5.426185 TGTGGTTATTTATTACTCCCTCCGT 59.574 40.000 0.00 0.00 0.00 4.69
2753 2935 5.987953 GTGGTTATTTATTACTCCCTCCGTC 59.012 44.000 0.00 0.00 0.00 4.79
2754 2936 5.070847 TGGTTATTTATTACTCCCTCCGTCC 59.929 44.000 0.00 0.00 0.00 4.79
2755 2937 5.225642 GTTATTTATTACTCCCTCCGTCCG 58.774 45.833 0.00 0.00 0.00 4.79
2756 2938 1.696063 TTATTACTCCCTCCGTCCGG 58.304 55.000 0.00 0.00 0.00 5.14
2757 2939 0.846015 TATTACTCCCTCCGTCCGGA 59.154 55.000 0.00 0.00 42.90 5.14
2758 2940 0.032813 ATTACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
2759 2941 0.251742 TTACTCCCTCCGTCCGGAAA 60.252 55.000 5.23 0.00 44.66 3.13
2760 2942 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2761 2943 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2762 2944 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2763 2945 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2764 2946 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2765 2947 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2766 2948 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2767 2949 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2768 2950 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
2769 2951 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
2770 2952 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
2771 2953 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
2772 2954 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
2773 2955 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
2774 2956 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
2775 2957 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
2776 2958 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
2777 2959 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
2778 2960 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
2779 2961 7.416664 CCGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
2780 2962 7.433131 CGGAAATACTTGTCATCAAAATGGATG 59.567 37.037 0.00 0.00 44.78 3.51
2833 3015 9.499479 ACATCTAGATACATCCATTTCAATGAC 57.501 33.333 4.54 0.00 38.70 3.06
2834 3016 9.498176 CATCTAGATACATCCATTTCAATGACA 57.502 33.333 4.54 0.00 38.70 3.58
2836 3018 9.551734 TCTAGATACATCCATTTCAATGACAAG 57.448 33.333 0.81 0.00 38.70 3.16
2837 3019 9.334947 CTAGATACATCCATTTCAATGACAAGT 57.665 33.333 0.81 0.00 38.70 3.16
2839 3021 9.857656 AGATACATCCATTTCAATGACAAGTAT 57.142 29.630 0.81 4.50 38.70 2.12
2843 3025 8.253113 ACATCCATTTCAATGACAAGTATTTCC 58.747 33.333 0.81 0.00 38.70 3.13
2844 3026 6.851609 TCCATTTCAATGACAAGTATTTCCG 58.148 36.000 0.81 0.00 38.70 4.30
2845 3027 6.035843 CCATTTCAATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 38.70 5.14
2846 3028 6.127758 CCATTTCAATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 38.70 5.14
2847 3029 5.873179 TTCAATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 0.00 4.79
2848 3030 3.930229 TCAATGACAAGTATTTCCGGACG 59.070 43.478 1.83 0.00 0.00 4.79
2849 3031 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
2850 3032 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
2851 3033 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
2852 3034 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2853 3035 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2854 3036 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2855 3037 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2893 3075 6.594744 TGCATATTGACTCATTCATACCAGT 58.405 36.000 0.00 0.00 32.84 4.00
3028 3210 5.001232 TGAACTTGGTGGAAATAGTAGCAC 58.999 41.667 0.00 0.00 0.00 4.40
3149 3331 2.435372 AGCCAGTTCCTGTTTCACAA 57.565 45.000 0.00 0.00 0.00 3.33
3191 3373 2.815478 CTACAGGGCGAAGATCAAGAC 58.185 52.381 0.00 0.00 0.00 3.01
3257 3439 6.662414 TGCATTACATACTTGCTGTTCTAC 57.338 37.500 0.00 0.00 37.28 2.59
3379 3562 5.948758 TCTGGCAAATCAACATTATGTGGTA 59.051 36.000 0.00 0.00 0.00 3.25
3568 3751 1.971167 TGCTTGGGCAATGGACGAC 60.971 57.895 0.00 0.00 46.36 4.34
3595 3778 0.899717 ATGAAAGGGCACGTGGCATT 60.900 50.000 38.28 35.46 46.44 3.56
3634 3817 7.145323 GTGTAGCATACTTTGACACCAAAAAT 58.855 34.615 0.00 0.00 43.54 1.82
3670 3853 1.185618 TCGACTCCCCTGGTCACAAG 61.186 60.000 0.00 0.00 33.73 3.16
3742 3925 3.840666 TCCTAGTTGTTGATGCCTCTCTT 59.159 43.478 0.00 0.00 0.00 2.85
3751 3934 4.082665 TGATGCCTCTCTTGGATCATTC 57.917 45.455 0.00 0.00 0.00 2.67
3757 3940 3.382865 CCTCTCTTGGATCATTCGAGTCA 59.617 47.826 0.00 0.00 0.00 3.41
3760 3943 2.159043 TCTTGGATCATTCGAGTCAGGC 60.159 50.000 0.00 0.00 0.00 4.85
3781 3964 1.304630 GGGCGTTAATGGGGTTGGT 60.305 57.895 0.00 0.00 0.00 3.67
3814 3997 2.222908 GCACTCACAGCTTATTCGAAGC 60.223 50.000 3.35 1.02 43.31 3.86
3823 4006 3.748298 GCTTATTCGAAGCTTTGGTGTC 58.252 45.455 13.87 0.00 40.01 3.67
3844 4027 4.324936 GTCGAGAACTTGATAGTTGCTGTC 59.675 45.833 0.00 0.00 44.51 3.51
3922 4105 3.690460 ACTTGGCATTTTTCTCCGATCT 58.310 40.909 0.00 0.00 0.00 2.75
3967 4150 1.237285 CCTGGGTTCCTTTGAGTGCG 61.237 60.000 0.00 0.00 0.00 5.34
4028 4211 6.976088 ACTCGTCTCTCATCATGGTAATAAG 58.024 40.000 0.00 0.00 0.00 1.73
4119 4302 7.320443 TCAATATATGCTTGTCAGGTTTCAC 57.680 36.000 0.00 0.00 0.00 3.18
4163 4346 2.262915 CTCGTCAGCACCACCTCC 59.737 66.667 0.00 0.00 0.00 4.30
4251 4434 1.025812 TGGCGGTTTGTGGTAAAGTG 58.974 50.000 0.00 0.00 0.00 3.16
4267 4450 0.603707 AGTGGTGTGTGGAGCAATCG 60.604 55.000 0.00 0.00 0.00 3.34
4287 4470 4.575885 TCGGAAGTGATTCCAAGGTAAAG 58.424 43.478 7.72 0.00 41.16 1.85
4298 4482 5.964958 TCCAAGGTAAAGCTCTGAATTTG 57.035 39.130 0.00 0.00 0.00 2.32
4321 4526 6.754702 GTGTCCTCACAGTTAGTCATACTA 57.245 41.667 0.00 0.00 43.37 1.82
4335 4540 9.654663 GTTAGTCATACTAGTTGGTTTCTGAAT 57.345 33.333 0.00 0.00 31.47 2.57
4351 4556 9.515020 GGTTTCTGAATTATTAATTTCATCGCA 57.485 29.630 3.27 0.00 0.00 5.10
4364 4569 1.737236 TCATCGCATTTGTTTCGGAGG 59.263 47.619 0.00 0.00 0.00 4.30
4376 4581 1.552799 TTCGGAGGAGAATGCCTGCA 61.553 55.000 0.00 0.00 45.72 4.41
4377 4582 1.147824 CGGAGGAGAATGCCTGCAT 59.852 57.895 0.00 0.00 45.72 3.96
4380 4585 1.202903 GGAGGAGAATGCCTGCATGAT 60.203 52.381 5.22 0.00 44.88 2.45
4399 4604 4.681744 TGATAATATCGATATGCGCTGCA 58.318 39.130 18.42 8.62 44.86 4.41
4413 4619 2.762472 CGCTGCAAACAAATCTACTCG 58.238 47.619 0.00 0.00 0.00 4.18
4415 4621 2.484264 GCTGCAAACAAATCTACTCGGT 59.516 45.455 0.00 0.00 0.00 4.69
4446 4652 4.816392 TGCAGTTAGTTATCTTGCTTCGA 58.184 39.130 0.00 0.00 0.00 3.71
4475 4681 5.534278 TGGAGCTGTTGTGTGATATCAAAAA 59.466 36.000 7.07 0.00 0.00 1.94
4560 4766 1.459450 GACTCCTCTCGTCTCAGCTT 58.541 55.000 0.00 0.00 0.00 3.74
4591 4797 0.167908 GCGACAACATTGCGATTGGA 59.832 50.000 11.02 0.00 32.28 3.53
4624 4830 1.414181 GACCCGATCCATGTGATGTCT 59.586 52.381 1.91 0.00 32.41 3.41
4633 4839 2.290514 CCATGTGATGTCTGGTGGAGTT 60.291 50.000 0.00 0.00 0.00 3.01
4645 4851 1.021390 GTGGAGTTCTGTGCCATCCG 61.021 60.000 0.00 0.00 33.66 4.18
4720 4926 1.696063 TCACCGTACCTATACTGCCC 58.304 55.000 0.00 0.00 0.00 5.36
4744 4950 4.372656 GCCTTCAGGTATGTAGTAGCAAG 58.627 47.826 0.00 0.00 37.57 4.01
4773 4979 3.945921 CTGACCATGCATTGTGAGAGAAT 59.054 43.478 11.28 0.00 0.00 2.40
4804 5016 2.124942 TAATGCCGTGCCATCGCA 60.125 55.556 0.00 0.00 44.78 5.10
4817 5029 1.300931 ATCGCACAACGCACTGACT 60.301 52.632 0.00 0.00 42.60 3.41
4818 5030 1.560004 ATCGCACAACGCACTGACTG 61.560 55.000 0.00 0.00 42.60 3.51
4819 5031 2.051882 GCACAACGCACTGACTGC 60.052 61.111 0.00 0.00 43.21 4.40
4820 5032 2.537560 GCACAACGCACTGACTGCT 61.538 57.895 0.00 0.00 44.64 4.24
4821 5033 1.221466 GCACAACGCACTGACTGCTA 61.221 55.000 0.00 0.00 44.64 3.49
4822 5034 0.508641 CACAACGCACTGACTGCTAC 59.491 55.000 0.00 0.00 44.64 3.58
4823 5035 0.600255 ACAACGCACTGACTGCTACC 60.600 55.000 0.00 0.00 44.64 3.18
4824 5036 1.004918 AACGCACTGACTGCTACCC 60.005 57.895 0.00 0.00 44.64 3.69
4825 5037 1.754380 AACGCACTGACTGCTACCCA 61.754 55.000 0.00 0.00 44.64 4.51
4826 5038 1.005037 CGCACTGACTGCTACCCAA 60.005 57.895 0.00 0.00 44.64 4.12
4827 5039 0.602638 CGCACTGACTGCTACCCAAA 60.603 55.000 0.00 0.00 44.64 3.28
4828 5040 1.604604 GCACTGACTGCTACCCAAAA 58.395 50.000 0.00 0.00 43.33 2.44
4829 5041 2.162681 GCACTGACTGCTACCCAAAAT 58.837 47.619 0.00 0.00 43.33 1.82
4830 5042 2.558359 GCACTGACTGCTACCCAAAATT 59.442 45.455 0.00 0.00 43.33 1.82
4831 5043 3.612479 GCACTGACTGCTACCCAAAATTG 60.612 47.826 0.00 0.00 43.33 2.32
4850 5075 0.329596 GTCCCCAGTTTGAGCTCCAT 59.670 55.000 12.15 0.00 0.00 3.41
4886 5111 4.671590 TCGGCGTCCCTGGTGAGA 62.672 66.667 6.85 0.00 0.00 3.27
4895 5120 0.608130 CCCTGGTGAGAATCGTGTCA 59.392 55.000 0.00 0.00 38.61 3.58
4946 5171 2.512515 AAGAAGCCGCGGATGCTC 60.513 61.111 33.48 19.30 38.34 4.26
4955 5180 3.120105 CGGATGCTCACCGCTAGA 58.880 61.111 0.00 0.00 43.74 2.43
4968 5193 1.524002 GCTAGACAGGCTGCCATCA 59.476 57.895 22.65 7.92 0.00 3.07
4980 5205 0.384309 TGCCATCATCGAGGTACGTC 59.616 55.000 5.47 5.47 43.13 4.34
4988 5213 1.132436 CGAGGTACGTCGCGTTACA 59.868 57.895 23.17 0.00 41.54 2.41
5012 5237 0.176680 CGCCCTTACAGCAGATGAGT 59.823 55.000 0.00 0.00 0.00 3.41
5054 5285 1.065551 GTCTGTGGTGCCTGTTTTGTC 59.934 52.381 0.00 0.00 0.00 3.18
5099 5330 2.126031 GTGGAGGAGTTCGCGACC 60.126 66.667 9.15 7.34 0.00 4.79
5111 5342 4.785453 GCGACCCTCAAGGCCCTG 62.785 72.222 0.00 0.00 40.58 4.45
5249 5498 5.449862 GGAGCAGAGTTGTATAGACAGACAG 60.450 48.000 0.00 0.00 36.76 3.51
5279 5528 2.847234 AGGTCAGGGGTGCGTGAA 60.847 61.111 0.00 0.00 0.00 3.18
5286 5535 2.258726 GGGGTGCGTGAACCTGAAC 61.259 63.158 0.00 0.00 40.35 3.18
5299 5548 0.317519 CCTGAACGTTTTTGGCGGAC 60.318 55.000 0.46 0.00 0.00 4.79
5301 5550 1.369568 GAACGTTTTTGGCGGACCG 60.370 57.895 10.29 10.29 39.70 4.79
5317 5566 0.250597 ACCGGACCAGTTTACTTGGC 60.251 55.000 9.46 0.00 0.00 4.52
5487 5754 1.896660 TCTGCTTTTGGGTCGGTGC 60.897 57.895 0.00 0.00 0.00 5.01
5488 5755 2.909965 TGCTTTTGGGTCGGTGCC 60.910 61.111 0.00 0.00 0.00 5.01
5571 5866 0.249868 GAATCCGATGTGCATCCGGA 60.250 55.000 22.86 22.86 41.25 5.14
5573 5868 0.532862 ATCCGATGTGCATCCGGAAC 60.533 55.000 23.90 2.21 40.79 3.62
5574 5869 1.449423 CCGATGTGCATCCGGAACA 60.449 57.895 9.01 9.49 40.11 3.18
5575 5870 1.431488 CCGATGTGCATCCGGAACAG 61.431 60.000 9.01 2.34 38.84 3.16
5577 5872 0.107703 GATGTGCATCCGGAACAGGA 60.108 55.000 9.01 0.00 38.84 3.86
5578 5873 0.107508 ATGTGCATCCGGAACAGGAG 60.108 55.000 9.01 0.00 44.55 3.69
5579 5874 1.450312 GTGCATCCGGAACAGGAGG 60.450 63.158 9.01 1.72 44.55 4.30
5581 5876 2.202932 CATCCGGAACAGGAGGCG 60.203 66.667 9.01 0.00 44.55 5.52
5582 5877 2.683933 ATCCGGAACAGGAGGCGT 60.684 61.111 9.01 0.00 44.55 5.68
5583 5878 2.722201 ATCCGGAACAGGAGGCGTC 61.722 63.158 9.01 0.00 44.55 5.19
5596 5899 3.545481 GCGTCCGCGTCTCATGTG 61.545 66.667 4.92 0.00 40.81 3.21
5604 5907 0.173481 GCGTCTCATGTGCCTGTAGA 59.827 55.000 0.00 0.00 0.00 2.59
5605 5908 1.914634 CGTCTCATGTGCCTGTAGAC 58.085 55.000 0.00 0.00 34.55 2.59
5606 5909 1.202348 CGTCTCATGTGCCTGTAGACA 59.798 52.381 8.62 0.00 37.09 3.41
5607 5910 2.733542 CGTCTCATGTGCCTGTAGACAG 60.734 54.545 2.50 2.50 43.40 3.51
5609 5912 2.493675 TCTCATGTGCCTGTAGACAGAC 59.506 50.000 11.31 0.00 46.59 3.51
5610 5913 2.232208 CTCATGTGCCTGTAGACAGACA 59.768 50.000 11.31 8.68 46.59 3.41
5615 5918 2.529632 TGCCTGTAGACAGACACTCAT 58.470 47.619 11.31 0.00 46.59 2.90
5616 5919 2.232208 TGCCTGTAGACAGACACTCATG 59.768 50.000 11.31 0.00 46.59 3.07
5617 5920 2.493675 GCCTGTAGACAGACACTCATGA 59.506 50.000 11.31 0.00 46.59 3.07
5619 5922 3.761218 CCTGTAGACAGACACTCATGAGT 59.239 47.826 22.89 22.89 46.59 3.41
5694 5997 1.680522 CCGCATCTCCTGTAGGCAGT 61.681 60.000 0.00 0.00 41.02 4.40
5716 6019 4.633565 GTCACTGATGAATTCCTCCTGTTC 59.366 45.833 2.27 0.00 36.31 3.18
5766 6439 3.929095 CGTAGCAAGCACGAACTTC 57.071 52.632 10.12 0.00 41.91 3.01
5790 6463 2.159014 AGTTGTGACTGCTGAACGGTTA 60.159 45.455 0.00 0.00 38.28 2.85
5815 6494 2.502295 CTGGCCTGAGGATATTTCTGC 58.498 52.381 0.65 0.00 0.00 4.26
5820 6499 3.314635 GCCTGAGGATATTTCTGCTTGTG 59.685 47.826 0.65 0.00 0.00 3.33
5831 6510 0.543277 CTGCTTGTGAGAGGGCCATA 59.457 55.000 6.18 0.00 0.00 2.74
5844 6523 0.536006 GGCCATAGCTCACATGGGTC 60.536 60.000 14.51 0.70 42.79 4.46
5859 6539 0.038526 GGGTCTTCACGACGACACAT 60.039 55.000 0.00 0.00 43.79 3.21
5863 6572 1.275471 CTTCACGACGACACATGCGT 61.275 55.000 0.00 0.00 45.79 5.24
5877 6586 1.002142 CATGCGTCCACCATTATGCAG 60.002 52.381 0.00 0.00 40.71 4.41
5894 6603 1.739049 AGCCGAGCTTAGCTGCTAG 59.261 57.895 13.01 5.73 44.17 3.42
5900 6609 3.243569 CCGAGCTTAGCTGCTAGTACATT 60.244 47.826 13.01 0.00 44.17 2.71
5902 6611 4.498177 CGAGCTTAGCTGCTAGTACATTCA 60.498 45.833 13.01 0.00 44.17 2.57
5903 6612 5.537188 GAGCTTAGCTGCTAGTACATTCAT 58.463 41.667 13.01 0.00 44.17 2.57
5904 6613 6.568653 CGAGCTTAGCTGCTAGTACATTCATA 60.569 42.308 13.01 0.00 44.17 2.15
5905 6614 7.238486 AGCTTAGCTGCTAGTACATTCATAT 57.762 36.000 5.70 0.00 42.10 1.78
5908 6617 9.243637 GCTTAGCTGCTAGTACATTCATATATC 57.756 37.037 9.62 0.00 0.00 1.63
5957 6672 9.914131 CTACACATCTAATAAAAGGATCGATGA 57.086 33.333 0.54 0.00 33.10 2.92
5960 6675 9.138062 CACATCTAATAAAAGGATCGATGAGAG 57.862 37.037 0.54 0.00 33.10 3.20
6029 6744 3.334054 GTCCCCTCTGCTTGCCCT 61.334 66.667 0.00 0.00 0.00 5.19
6046 6761 1.206072 CTTGCGCTGCACTGAACTC 59.794 57.895 9.73 0.00 38.71 3.01
6141 6860 3.036084 ACGTTGCGAGCTTCACCG 61.036 61.111 5.56 5.56 0.00 4.94
6181 6900 2.804090 GTCCGTTGAGGTCGTCGC 60.804 66.667 0.00 0.00 41.99 5.19
6188 6907 1.390463 GTTGAGGTCGTCGCTGATTTC 59.610 52.381 0.00 0.00 0.00 2.17
6192 6911 1.000145 GGTCGTCGCTGATTTCCTTC 59.000 55.000 0.00 0.00 0.00 3.46
6193 6912 1.000145 GTCGTCGCTGATTTCCTTCC 59.000 55.000 0.00 0.00 0.00 3.46
6194 6913 0.457853 TCGTCGCTGATTTCCTTCCG 60.458 55.000 0.00 0.00 0.00 4.30
6195 6914 0.736325 CGTCGCTGATTTCCTTCCGT 60.736 55.000 0.00 0.00 0.00 4.69
6196 6915 1.000145 GTCGCTGATTTCCTTCCGTC 59.000 55.000 0.00 0.00 0.00 4.79
6197 6916 0.108329 TCGCTGATTTCCTTCCGTCC 60.108 55.000 0.00 0.00 0.00 4.79
6198 6917 1.421410 CGCTGATTTCCTTCCGTCCG 61.421 60.000 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 106 2.668834 CGAGAGAAACAACGAGAGGGAC 60.669 54.545 0.00 0.00 0.00 4.46
105 107 1.540267 CGAGAGAAACAACGAGAGGGA 59.460 52.381 0.00 0.00 0.00 4.20
106 108 1.269998 ACGAGAGAAACAACGAGAGGG 59.730 52.381 0.00 0.00 0.00 4.30
107 109 2.287668 ACACGAGAGAAACAACGAGAGG 60.288 50.000 0.00 0.00 0.00 3.69
108 110 2.974536 GACACGAGAGAAACAACGAGAG 59.025 50.000 0.00 0.00 0.00 3.20
109 111 2.617308 AGACACGAGAGAAACAACGAGA 59.383 45.455 0.00 0.00 0.00 4.04
110 112 3.001395 AGACACGAGAGAAACAACGAG 57.999 47.619 0.00 0.00 0.00 4.18
111 113 3.431922 AAGACACGAGAGAAACAACGA 57.568 42.857 0.00 0.00 0.00 3.85
112 114 3.669122 CCTAAGACACGAGAGAAACAACG 59.331 47.826 0.00 0.00 0.00 4.10
113 115 3.429207 GCCTAAGACACGAGAGAAACAAC 59.571 47.826 0.00 0.00 0.00 3.32
114 116 3.650139 GCCTAAGACACGAGAGAAACAA 58.350 45.455 0.00 0.00 0.00 2.83
115 117 2.351447 CGCCTAAGACACGAGAGAAACA 60.351 50.000 0.00 0.00 0.00 2.83
127 129 1.889573 GCAGCATCCCGCCTAAGAC 60.890 63.158 0.00 0.00 44.04 3.01
130 132 3.733344 GACGCAGCATCCCGCCTAA 62.733 63.158 0.00 0.00 44.04 2.69
211 213 3.259064 TCCATTCGCAGCTACTACAAAC 58.741 45.455 0.00 0.00 0.00 2.93
225 231 4.241555 CCCCGGGAGCTCCATTCG 62.242 72.222 33.29 25.79 37.91 3.34
258 267 7.174426 CCAAAACCTAACCCAGAGTTAACTAAG 59.826 40.741 8.42 3.96 40.43 2.18
266 275 1.780919 AGCCAAAACCTAACCCAGAGT 59.219 47.619 0.00 0.00 0.00 3.24
336 353 0.994995 CGACTCCGAGCATCACAAAG 59.005 55.000 0.00 0.00 38.22 2.77
407 424 0.527565 CAAAATGGAGCGAAGGTGGG 59.472 55.000 0.00 0.00 39.88 4.61
440 457 2.394708 CAATAGCTATCGTGGGTGTCG 58.605 52.381 6.72 0.00 0.00 4.35
442 459 1.416401 CCCAATAGCTATCGTGGGTGT 59.584 52.381 26.31 0.58 44.94 4.16
443 460 2.169832 CCCAATAGCTATCGTGGGTG 57.830 55.000 26.31 12.80 44.94 4.61
447 464 2.408050 GTGAGCCCAATAGCTATCGTG 58.592 52.381 6.72 2.44 45.15 4.35
448 465 1.344763 GGTGAGCCCAATAGCTATCGT 59.655 52.381 6.72 0.00 45.15 3.73
449 466 1.670087 CGGTGAGCCCAATAGCTATCG 60.670 57.143 6.72 0.00 45.15 2.92
450 467 1.344763 ACGGTGAGCCCAATAGCTATC 59.655 52.381 6.72 0.00 45.15 2.08
451 468 1.344763 GACGGTGAGCCCAATAGCTAT 59.655 52.381 0.00 0.00 45.15 2.97
452 469 0.750850 GACGGTGAGCCCAATAGCTA 59.249 55.000 0.00 0.00 45.15 3.32
454 471 0.811616 CTGACGGTGAGCCCAATAGC 60.812 60.000 0.00 0.00 0.00 2.97
455 472 0.824109 TCTGACGGTGAGCCCAATAG 59.176 55.000 0.00 0.00 0.00 1.73
457 474 1.296715 GTCTGACGGTGAGCCCAAT 59.703 57.895 0.00 0.00 0.00 3.16
458 475 2.099652 CTGTCTGACGGTGAGCCCAA 62.100 60.000 8.49 0.00 0.00 4.12
459 476 2.523168 TGTCTGACGGTGAGCCCA 60.523 61.111 2.98 0.00 0.00 5.36
460 477 2.262915 CTGTCTGACGGTGAGCCC 59.737 66.667 8.49 0.00 0.00 5.19
468 489 4.051237 TGAAGAATGAACACTGTCTGACG 58.949 43.478 2.98 0.99 0.00 4.35
472 493 6.876257 GGATAACTGAAGAATGAACACTGTCT 59.124 38.462 0.00 0.00 0.00 3.41
499 520 1.417890 AGCCGGAACTATTGCTAGCAT 59.582 47.619 20.13 11.28 30.97 3.79
502 523 3.126831 CAGAAGCCGGAACTATTGCTAG 58.873 50.000 5.05 0.00 32.82 3.42
517 538 2.238395 AGAGGACCCAGAAATCAGAAGC 59.762 50.000 0.00 0.00 0.00 3.86
550 603 0.329596 AGCCCTCGAAAAGATTGGCT 59.670 50.000 0.00 0.00 46.16 4.75
562 615 1.151668 GTTATATGCAGCAGCCCTCG 58.848 55.000 0.00 0.00 41.13 4.63
571 624 6.349611 GCCAAACATCCCATAGTTATATGCAG 60.350 42.308 0.00 0.00 37.97 4.41
599 652 0.874607 ATGAAACGCTATCGGACGGC 60.875 55.000 0.00 0.00 40.69 5.68
601 654 2.190161 TGAATGAAACGCTATCGGACG 58.810 47.619 0.00 0.00 40.69 4.79
636 689 2.985139 GACACGGAACTACTGCTAACAC 59.015 50.000 0.00 0.00 0.00 3.32
701 754 2.825532 GCACCATACACCAACAATCCTT 59.174 45.455 0.00 0.00 0.00 3.36
706 759 3.386078 ACAAATGCACCATACACCAACAA 59.614 39.130 0.00 0.00 0.00 2.83
715 768 2.499197 ACGACACACAAATGCACCATA 58.501 42.857 0.00 0.00 0.00 2.74
795 848 4.723309 AGGCTAATAATTTGCTCCAGGAG 58.277 43.478 12.81 12.81 0.00 3.69
796 849 4.796110 AGGCTAATAATTTGCTCCAGGA 57.204 40.909 0.00 0.00 0.00 3.86
799 854 7.896383 AACATAAGGCTAATAATTTGCTCCA 57.104 32.000 0.00 0.00 0.00 3.86
847 902 6.153340 ACCACAGCTTATAAATGCAGAAACAT 59.847 34.615 0.00 0.00 0.00 2.71
874 929 1.180029 ACAGCATGAAACATGAGCCC 58.820 50.000 14.65 0.00 39.69 5.19
879 934 4.616802 GGTTACGAAACAGCATGAAACATG 59.383 41.667 0.00 7.29 39.69 3.21
887 942 2.423577 GTCCTGGTTACGAAACAGCAT 58.576 47.619 7.02 0.00 37.34 3.79
1023 1078 1.756538 CATGTATTTCCCCAGCCCAAC 59.243 52.381 0.00 0.00 0.00 3.77
1076 1131 6.019318 CCAGACGGGTAGTTTATACGAAATTG 60.019 42.308 0.00 0.00 0.00 2.32
1078 1133 5.594926 CCAGACGGGTAGTTTATACGAAAT 58.405 41.667 0.00 0.00 0.00 2.17
1099 1154 3.798515 AGTGAGTAACTACCAATCCCCA 58.201 45.455 0.00 0.00 37.36 4.96
1236 1295 3.722147 GCATACCTCACAGGACATACAG 58.278 50.000 0.00 0.00 37.67 2.74
1278 1337 8.739972 GGTTCATTGGAGTTATTGAAATACAGT 58.260 33.333 0.00 0.00 30.51 3.55
1441 1500 6.595326 CAGATACACCAGAATGCTTGTTTCTA 59.405 38.462 0.00 0.00 37.04 2.10
1747 1808 8.574251 TGCATTGAGGATTTAAACTAGCTAAA 57.426 30.769 0.00 0.00 0.00 1.85
1849 1939 3.564225 CGCCAGGACAGTTAGTTTTCTTT 59.436 43.478 0.00 0.00 0.00 2.52
1853 1943 1.418637 TCCGCCAGGACAGTTAGTTTT 59.581 47.619 0.00 0.00 42.75 2.43
1887 1981 4.658901 AGAGGTAAGAAGGTCTGGTTTGAA 59.341 41.667 0.00 0.00 0.00 2.69
1892 1986 4.134933 AGAAGAGGTAAGAAGGTCTGGT 57.865 45.455 0.00 0.00 0.00 4.00
1955 2049 7.874528 AGAAGTTTTGGCAAATCTATCAAAAGG 59.125 33.333 20.54 0.00 39.00 3.11
2136 2252 8.090788 TCCTATAAAAGAACAGCTAGTCCATT 57.909 34.615 0.00 0.00 0.00 3.16
2214 2330 3.375299 AGAACGATATCAAGCAAACAGGC 59.625 43.478 3.12 0.00 0.00 4.85
2516 2696 8.846943 TGCTTAAAGATGTGAGATTAGTCAAA 57.153 30.769 0.00 0.00 0.00 2.69
2557 2739 7.388776 GCATATAGTTGCTCTCCACATGATAAA 59.611 37.037 0.00 0.00 39.57 1.40
2567 2749 3.181461 ACACTGGCATATAGTTGCTCTCC 60.181 47.826 0.00 0.00 42.38 3.71
2580 2762 1.956477 GTTCTTTGGTCACACTGGCAT 59.044 47.619 0.00 0.00 0.00 4.40
2633 2815 7.403312 TTGATAGTAACATTGGACCAAATGG 57.597 36.000 11.82 6.68 41.06 3.16
2650 2832 4.818546 GCAGTAGATTGGCACATTGATAGT 59.181 41.667 0.00 0.00 39.30 2.12
2662 2844 4.040217 AGCAGATTAGAGGCAGTAGATTGG 59.960 45.833 0.00 0.00 0.00 3.16
2726 2908 6.259387 CGGAGGGAGTAATAAATAACCACAAC 59.741 42.308 0.00 0.00 0.00 3.32
2730 2912 5.070847 GGACGGAGGGAGTAATAAATAACCA 59.929 44.000 0.00 0.00 0.00 3.67
2739 2921 0.032813 TTCCGGACGGAGGGAGTAAT 60.033 55.000 13.64 0.00 46.06 1.89
2741 2923 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
2742 2924 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
2743 2925 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2744 2926 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2745 2927 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2746 2928 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2747 2929 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
2748 2930 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
2749 2931 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
2750 2932 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
2751 2933 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
2752 2934 6.127758 CCATTTTGATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
2753 2935 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
2754 2936 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
2755 2937 8.469200 TCATCCATTTTGATGACAAGTATTTCC 58.531 33.333 0.00 0.00 44.65 3.13
2807 2989 9.499479 GTCATTGAAATGGATGTATCTAGATGT 57.501 33.333 15.79 1.25 37.03 3.06
2808 2990 9.498176 TGTCATTGAAATGGATGTATCTAGATG 57.502 33.333 15.79 0.00 37.03 2.90
2810 2992 9.551734 CTTGTCATTGAAATGGATGTATCTAGA 57.448 33.333 0.00 0.00 37.03 2.43
2811 2993 9.334947 ACTTGTCATTGAAATGGATGTATCTAG 57.665 33.333 3.31 0.00 37.03 2.43
2813 2995 9.857656 ATACTTGTCATTGAAATGGATGTATCT 57.142 29.630 3.31 0.00 37.03 1.98
2817 2999 8.253113 GGAAATACTTGTCATTGAAATGGATGT 58.747 33.333 3.31 2.77 37.03 3.06
2818 3000 7.433131 CGGAAATACTTGTCATTGAAATGGATG 59.567 37.037 3.31 0.00 37.03 3.51
2819 3001 7.416664 CCGGAAATACTTGTCATTGAAATGGAT 60.417 37.037 0.00 0.00 37.03 3.41
2820 3002 6.127758 CCGGAAATACTTGTCATTGAAATGGA 60.128 38.462 0.00 0.00 37.03 3.41
2821 3003 6.035843 CCGGAAATACTTGTCATTGAAATGG 58.964 40.000 0.00 0.00 37.03 3.16
2822 3004 6.747280 GTCCGGAAATACTTGTCATTGAAATG 59.253 38.462 5.23 0.00 37.75 2.32
2823 3005 6.403200 CGTCCGGAAATACTTGTCATTGAAAT 60.403 38.462 5.23 0.00 0.00 2.17
2824 3006 5.106869 CGTCCGGAAATACTTGTCATTGAAA 60.107 40.000 5.23 0.00 0.00 2.69
2825 3007 4.390603 CGTCCGGAAATACTTGTCATTGAA 59.609 41.667 5.23 0.00 0.00 2.69
2826 3008 3.930229 CGTCCGGAAATACTTGTCATTGA 59.070 43.478 5.23 0.00 0.00 2.57
2827 3009 3.063452 CCGTCCGGAAATACTTGTCATTG 59.937 47.826 5.23 0.00 37.50 2.82
2828 3010 3.055675 TCCGTCCGGAAATACTTGTCATT 60.056 43.478 5.23 0.00 42.05 2.57
2829 3011 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
2830 3012 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
2831 3013 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2832 3014 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2833 3015 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2834 3016 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2835 3017 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2836 3018 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2837 3019 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2838 3020 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2839 3021 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
2840 3022 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
2841 3023 1.856539 AAGTACTCCCTCCGTCCGGA 61.857 60.000 0.00 0.00 42.90 5.14
2842 3024 1.379576 AAGTACTCCCTCCGTCCGG 60.380 63.158 0.00 0.00 0.00 5.14
2843 3025 1.664321 CCAAGTACTCCCTCCGTCCG 61.664 65.000 0.00 0.00 0.00 4.79
2844 3026 0.614134 ACCAAGTACTCCCTCCGTCC 60.614 60.000 0.00 0.00 0.00 4.79
2845 3027 2.022934 CTACCAAGTACTCCCTCCGTC 58.977 57.143 0.00 0.00 0.00 4.79
2846 3028 1.357079 ACTACCAAGTACTCCCTCCGT 59.643 52.381 0.00 0.00 32.84 4.69
2847 3029 1.749634 CACTACCAAGTACTCCCTCCG 59.250 57.143 0.00 0.00 33.48 4.63
2848 3030 2.817665 ACACTACCAAGTACTCCCTCC 58.182 52.381 0.00 0.00 33.48 4.30
2849 3031 3.616802 GCAACACTACCAAGTACTCCCTC 60.617 52.174 0.00 0.00 33.48 4.30
2850 3032 2.302157 GCAACACTACCAAGTACTCCCT 59.698 50.000 0.00 0.00 33.48 4.20
2851 3033 2.038033 TGCAACACTACCAAGTACTCCC 59.962 50.000 0.00 0.00 33.48 4.30
2852 3034 3.396260 TGCAACACTACCAAGTACTCC 57.604 47.619 0.00 0.00 33.48 3.85
2853 3035 6.816640 TCAATATGCAACACTACCAAGTACTC 59.183 38.462 0.00 0.00 33.48 2.59
2854 3036 6.594159 GTCAATATGCAACACTACCAAGTACT 59.406 38.462 0.00 0.00 33.48 2.73
2855 3037 6.594159 AGTCAATATGCAACACTACCAAGTAC 59.406 38.462 0.00 0.00 33.48 2.73
3028 3210 0.729116 CTGAGTATTGGCGGCAACAG 59.271 55.000 27.95 23.48 0.00 3.16
3117 3299 4.043435 AGGAACTGGCTTCTTAATCTTGGT 59.957 41.667 0.00 0.00 37.18 3.67
3149 3331 0.981183 TCCACGGTTCTGGCTTGTAT 59.019 50.000 0.00 0.00 0.00 2.29
3191 3373 5.587844 AGCAAGATTTAGTTGTCTAGGCATG 59.412 40.000 0.00 0.00 31.26 4.06
3267 3449 7.093201 ACAATACCGACTAAATACCTTTCAGGA 60.093 37.037 0.00 0.00 37.67 3.86
3271 3453 7.224167 CAGGACAATACCGACTAAATACCTTTC 59.776 40.741 0.00 0.00 34.73 2.62
3285 3467 4.442706 AGATTAAGCACAGGACAATACCG 58.557 43.478 0.00 0.00 34.73 4.02
3289 3471 5.416952 CCAAAGAGATTAAGCACAGGACAAT 59.583 40.000 0.00 0.00 0.00 2.71
3512 3695 6.537301 CCTTTTCCCTGAAAAACAAAGGTTAC 59.463 38.462 3.85 0.00 40.34 2.50
3559 3742 1.276138 TCATCAGCACTGTCGTCCATT 59.724 47.619 0.00 0.00 0.00 3.16
3565 3748 1.081892 CCCTTTCATCAGCACTGTCG 58.918 55.000 0.00 0.00 0.00 4.35
3568 3751 2.951269 TGCCCTTTCATCAGCACTG 58.049 52.632 0.00 0.00 0.00 3.66
3595 3778 2.424246 TGCTACACCGACATTCATCGTA 59.576 45.455 0.00 0.00 40.59 3.43
3634 3817 4.890088 AGTCGAGCATAACAACTTGGTAA 58.110 39.130 0.00 0.00 0.00 2.85
3670 3853 7.118390 CCAGATATCATGTTAGGAACGAAATCC 59.882 40.741 5.32 0.00 39.96 3.01
3742 3925 1.194218 TGCCTGACTCGAATGATCCA 58.806 50.000 0.00 0.00 0.00 3.41
3751 3934 2.572095 TAACGCCCATGCCTGACTCG 62.572 60.000 0.00 0.00 0.00 4.18
3757 3940 1.455587 CCCATTAACGCCCATGCCT 60.456 57.895 0.00 0.00 0.00 4.75
3760 3943 0.459489 CAACCCCATTAACGCCCATG 59.541 55.000 0.00 0.00 0.00 3.66
3781 3964 1.762370 TGTGAGTGCTCCTTTGTCTGA 59.238 47.619 0.00 0.00 0.00 3.27
3814 3997 5.230942 ACTATCAAGTTCTCGACACCAAAG 58.769 41.667 0.00 0.00 29.00 2.77
3817 4000 4.556233 CAACTATCAAGTTCTCGACACCA 58.444 43.478 0.00 0.00 44.28 4.17
3823 4006 4.237724 TGACAGCAACTATCAAGTTCTCG 58.762 43.478 0.00 0.00 44.28 4.04
3922 4105 3.194755 TCGCTGACTCTTTATAGCCACAA 59.805 43.478 0.00 0.00 32.70 3.33
3967 4150 6.690530 TGTCACCAGATTTTCATTTTCCATC 58.309 36.000 0.00 0.00 0.00 3.51
4028 4211 5.474578 TGAGGTCTACCATGCAGAATATC 57.525 43.478 1.26 0.00 38.89 1.63
4035 4218 0.104855 GCGATGAGGTCTACCATGCA 59.895 55.000 1.26 0.00 38.89 3.96
4119 4302 0.674895 CTTCCAGAAGGCAAGTCCCG 60.675 60.000 0.00 0.00 34.87 5.14
4163 4346 1.197721 GTGGCCTTGAAACATCACGAG 59.802 52.381 3.32 0.00 0.00 4.18
4251 4434 0.605319 TTCCGATTGCTCCACACACC 60.605 55.000 0.00 0.00 0.00 4.16
4287 4470 3.820777 GTGAGGACACAAATTCAGAGC 57.179 47.619 0.00 0.00 45.32 4.09
4298 4482 5.646577 AGTATGACTAACTGTGAGGACAC 57.353 43.478 0.00 0.00 46.09 3.67
4335 4540 8.802856 CCGAAACAAATGCGATGAAATTAATAA 58.197 29.630 0.00 0.00 0.00 1.40
4339 4544 5.944013 TCCGAAACAAATGCGATGAAATTA 58.056 33.333 0.00 0.00 0.00 1.40
4344 4549 1.737236 CCTCCGAAACAAATGCGATGA 59.263 47.619 0.00 0.00 0.00 2.92
4351 4556 2.755103 GGCATTCTCCTCCGAAACAAAT 59.245 45.455 0.00 0.00 0.00 2.32
4364 4569 5.814188 TCGATATTATCATGCAGGCATTCTC 59.186 40.000 3.57 0.00 33.90 2.87
4376 4581 5.291971 TGCAGCGCATATCGATATTATCAT 58.708 37.500 15.33 0.00 41.67 2.45
4377 4582 4.681744 TGCAGCGCATATCGATATTATCA 58.318 39.130 15.33 5.56 41.67 2.15
4380 4585 4.688413 TGTTTGCAGCGCATATCGATATTA 59.312 37.500 15.33 0.00 38.76 0.98
4399 4604 9.840427 CAATTATTGAACCGAGTAGATTTGTTT 57.160 29.630 0.00 0.00 0.00 2.83
4415 4621 9.787532 GCAAGATAACTAACTGCAATTATTGAA 57.212 29.630 9.36 0.00 0.00 2.69
4444 4650 1.143305 CACAACAGCTCCAGAAGTCG 58.857 55.000 0.00 0.00 0.00 4.18
4446 4652 1.486310 TCACACAACAGCTCCAGAAGT 59.514 47.619 0.00 0.00 0.00 3.01
4475 4681 2.695147 CAAGGACCTGCAAAAAGGAGTT 59.305 45.455 0.00 0.00 40.02 3.01
4492 4698 1.280133 TCTCCAGAAGGCATCACAAGG 59.720 52.381 0.00 0.00 33.74 3.61
4609 4815 2.171237 TCCACCAGACATCACATGGATC 59.829 50.000 0.00 0.00 37.54 3.36
4624 4830 3.654021 TGGCACAGAACTCCACCA 58.346 55.556 0.00 0.00 0.00 4.17
4633 4839 2.924355 GGGTAATCCGGATGGCACAGA 61.924 57.143 19.95 0.00 36.59 3.41
4720 4926 2.288273 GCTACTACATACCTGAAGGCCG 60.288 54.545 0.00 0.00 39.32 6.13
4744 4950 0.604578 AATGCATGGTCAGTGGTTGC 59.395 50.000 0.00 0.00 0.00 4.17
4773 4979 5.522460 GCACGGCATTAGTAACTCTATTGAA 59.478 40.000 0.00 0.00 34.04 2.69
4817 5029 1.148027 TGGGGACAATTTTGGGTAGCA 59.852 47.619 0.00 0.00 37.44 3.49
4818 5030 1.824852 CTGGGGACAATTTTGGGTAGC 59.175 52.381 0.00 0.00 42.06 3.58
4819 5031 3.169512 ACTGGGGACAATTTTGGGTAG 57.830 47.619 0.00 0.00 42.06 3.18
4820 5032 3.621682 AACTGGGGACAATTTTGGGTA 57.378 42.857 0.00 0.00 42.06 3.69
4821 5033 2.437651 CAAACTGGGGACAATTTTGGGT 59.562 45.455 0.00 0.00 36.10 4.51
4822 5034 2.703007 TCAAACTGGGGACAATTTTGGG 59.297 45.455 0.00 0.00 36.10 4.12
4823 5035 3.803368 GCTCAAACTGGGGACAATTTTGG 60.803 47.826 0.00 0.00 36.10 3.28
4824 5036 3.070015 AGCTCAAACTGGGGACAATTTTG 59.930 43.478 0.00 0.00 36.10 2.44
4825 5037 3.308401 AGCTCAAACTGGGGACAATTTT 58.692 40.909 0.00 0.00 36.10 1.82
4826 5038 2.893489 GAGCTCAAACTGGGGACAATTT 59.107 45.455 9.40 0.00 41.07 1.82
4827 5039 2.519013 GAGCTCAAACTGGGGACAATT 58.481 47.619 9.40 0.00 42.06 2.32
4828 5040 1.272147 GGAGCTCAAACTGGGGACAAT 60.272 52.381 17.19 0.00 42.06 2.71
4829 5041 0.110486 GGAGCTCAAACTGGGGACAA 59.890 55.000 17.19 0.00 42.06 3.18
4830 5042 1.059584 TGGAGCTCAAACTGGGGACA 61.060 55.000 17.19 0.00 39.59 4.02
4831 5043 0.329596 ATGGAGCTCAAACTGGGGAC 59.670 55.000 17.19 0.00 0.00 4.46
4850 5075 4.539083 ACCTTCGCGTGGTGCACA 62.539 61.111 20.43 1.62 46.97 4.57
4886 5111 0.320771 GGTCCAGCAGTGACACGATT 60.321 55.000 0.00 0.00 34.36 3.34
4895 5120 0.683973 CAGTCTTCTGGTCCAGCAGT 59.316 55.000 16.90 3.16 37.97 4.40
4919 5144 2.267324 GGCTTCTTCGCTGAGGCT 59.733 61.111 10.27 0.00 38.79 4.58
4946 5171 2.510238 GCAGCCTGTCTAGCGGTG 60.510 66.667 0.00 0.00 34.64 4.94
4952 5177 0.390492 CGATGATGGCAGCCTGTCTA 59.610 55.000 14.15 3.00 0.00 2.59
4955 5180 1.145598 CTCGATGATGGCAGCCTGT 59.854 57.895 14.15 0.47 0.00 4.00
4968 5193 0.026803 GTAACGCGACGTACCTCGAT 59.973 55.000 15.93 5.87 39.99 3.59
4988 5213 1.746615 CTGCTGTAAGGGCGCACAT 60.747 57.895 14.57 0.66 0.00 3.21
5012 5237 1.351076 TCACCAGGCACTCATTCAGA 58.649 50.000 0.00 0.00 34.60 3.27
5095 5326 4.101448 CCAGGGCCTTGAGGGTCG 62.101 72.222 18.01 0.00 41.51 4.79
5096 5327 3.732849 CCCAGGGCCTTGAGGGTC 61.733 72.222 18.01 0.00 39.42 4.46
5153 5384 3.567478 CTGTACCTGCACGACGCCA 62.567 63.158 0.00 0.00 41.33 5.69
5249 5498 0.110147 CTGACCTGACGACGAGTGTC 60.110 60.000 0.00 3.37 41.91 3.67
5279 5528 0.748729 TCCGCCAAAAACGTTCAGGT 60.749 50.000 0.00 0.00 0.00 4.00
5286 5535 2.973600 TCCGGTCCGCCAAAAACG 60.974 61.111 5.50 0.00 34.09 3.60
5299 5548 0.036306 AGCCAAGTAAACTGGTCCGG 59.964 55.000 0.00 0.00 0.00 5.14
5301 5550 1.534729 CCAGCCAAGTAAACTGGTCC 58.465 55.000 0.00 0.00 44.91 4.46
5317 5566 1.407258 GAGTTCGACCAGATCCTCCAG 59.593 57.143 0.00 0.00 0.00 3.86
5470 5737 2.644992 GCACCGACCCAAAAGCAG 59.355 61.111 0.00 0.00 0.00 4.24
5544 5839 1.668419 CACATCGGATTCCCCAGAAC 58.332 55.000 0.00 0.00 33.97 3.01
5577 5872 4.498520 CATGAGACGCGGACGCCT 62.499 66.667 12.47 3.03 45.53 5.52
5578 5873 4.796231 ACATGAGACGCGGACGCC 62.796 66.667 12.47 0.00 45.53 5.68
5579 5874 3.545481 CACATGAGACGCGGACGC 61.545 66.667 12.47 6.63 45.53 5.19
5581 5876 3.188786 GGCACATGAGACGCGGAC 61.189 66.667 12.47 3.93 0.00 4.79
5582 5877 3.381983 AGGCACATGAGACGCGGA 61.382 61.111 12.47 0.00 0.00 5.54
5583 5878 2.557059 TACAGGCACATGAGACGCGG 62.557 60.000 12.47 0.00 0.00 6.46
5585 5880 0.173481 TCTACAGGCACATGAGACGC 59.827 55.000 0.00 0.00 0.00 5.19
5588 5891 2.807676 TCTGTCTACAGGCACATGAGA 58.192 47.619 10.11 0.00 43.91 3.27
5612 5915 2.707791 GGAATCCCCTCATCACTCATGA 59.292 50.000 0.00 0.00 39.39 3.07
5615 5918 2.575921 AGGAATCCCCTCATCACTCA 57.424 50.000 0.00 0.00 43.31 3.41
5625 5928 0.394899 CAGCAACAGGAGGAATCCCC 60.395 60.000 0.00 0.00 0.00 4.81
5626 5929 0.329596 ACAGCAACAGGAGGAATCCC 59.670 55.000 0.00 0.00 0.00 3.85
5627 5930 1.815003 CAACAGCAACAGGAGGAATCC 59.185 52.381 0.00 0.00 0.00 3.01
5628 5931 1.815003 CCAACAGCAACAGGAGGAATC 59.185 52.381 0.00 0.00 0.00 2.52
5629 5932 1.548582 CCCAACAGCAACAGGAGGAAT 60.549 52.381 0.00 0.00 0.00 3.01
5630 5933 0.178992 CCCAACAGCAACAGGAGGAA 60.179 55.000 0.00 0.00 0.00 3.36
5694 5997 4.323792 GGAACAGGAGGAATTCATCAGTGA 60.324 45.833 20.69 0.00 0.00 3.41
5751 6054 1.202580 ACTCAGAAGTTCGTGCTTGCT 60.203 47.619 0.00 0.00 28.74 3.91
5754 6057 2.609459 CACAACTCAGAAGTTCGTGCTT 59.391 45.455 0.00 0.00 43.99 3.91
5756 6059 2.033662 GTCACAACTCAGAAGTTCGTGC 60.034 50.000 0.00 0.00 43.99 5.34
5758 6061 3.448686 CAGTCACAACTCAGAAGTTCGT 58.551 45.455 0.00 0.00 43.99 3.85
5759 6062 2.219674 GCAGTCACAACTCAGAAGTTCG 59.780 50.000 0.00 0.00 43.99 3.95
5760 6063 3.247173 CAGCAGTCACAACTCAGAAGTTC 59.753 47.826 0.00 0.00 43.99 3.01
5761 6064 3.118629 TCAGCAGTCACAACTCAGAAGTT 60.119 43.478 0.00 0.00 46.80 2.66
5766 6439 1.524355 CGTTCAGCAGTCACAACTCAG 59.476 52.381 0.00 0.00 31.71 3.35
5790 6463 1.414061 ATATCCTCAGGCCAGCGCTT 61.414 55.000 7.50 0.00 34.44 4.68
5815 6494 0.835941 AGCTATGGCCCTCTCACAAG 59.164 55.000 0.00 0.00 39.73 3.16
5820 6499 1.055040 ATGTGAGCTATGGCCCTCTC 58.945 55.000 0.00 0.76 39.73 3.20
5831 6510 0.036952 CGTGAAGACCCATGTGAGCT 60.037 55.000 0.00 0.00 0.00 4.09
5844 6523 1.275471 ACGCATGTGTCGTCGTGAAG 61.275 55.000 5.96 0.00 34.84 3.02
5859 6539 1.375853 GCTGCATAATGGTGGACGCA 61.376 55.000 0.00 0.00 0.00 5.24
5863 6572 0.179048 CTCGGCTGCATAATGGTGGA 60.179 55.000 0.50 0.00 0.00 4.02
5877 6586 0.669077 TACTAGCAGCTAAGCTCGGC 59.331 55.000 3.09 3.07 45.26 5.54
5928 6641 9.350951 TCGATCCTTTTATTAGATGTGTAGAGA 57.649 33.333 0.00 0.00 0.00 3.10
5934 6647 9.138062 CTCTCATCGATCCTTTTATTAGATGTG 57.862 37.037 0.00 1.48 36.40 3.21
5977 6692 5.459110 TTGTTCGTACGGCTCAATTATTC 57.541 39.130 16.52 0.00 0.00 1.75
6029 6744 1.094650 TTGAGTTCAGTGCAGCGCAA 61.095 50.000 11.47 0.00 41.47 4.85
6046 6761 5.671493 AGGTAACGAGGAGAATAATGGTTG 58.329 41.667 0.00 0.00 46.39 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.