Multiple sequence alignment - TraesCS2B01G591400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G591400 chr2B 100.000 2982 0 0 1 2982 776821232 776824213 0.000000e+00 5507.0
1 TraesCS2B01G591400 chr2B 90.327 1375 106 15 16 1373 171099006 171100370 0.000000e+00 1777.0
2 TraesCS2B01G591400 chr2B 88.075 956 82 19 1372 2317 600081413 600082346 0.000000e+00 1105.0
3 TraesCS2B01G591400 chr2B 91.677 805 53 4 1417 2207 171100957 171101761 0.000000e+00 1103.0
4 TraesCS2B01G591400 chr2B 91.581 487 40 1 888 1373 600079414 600079900 0.000000e+00 671.0
5 TraesCS2B01G591400 chr2B 99.365 315 2 0 2668 2982 381381156 381380842 3.330000e-159 571.0
6 TraesCS2B01G591400 chr2B 99.051 316 2 1 2668 2982 90645030 90644715 1.550000e-157 566.0
7 TraesCS2B01G591400 chr2B 98.413 315 5 0 2668 2982 29071814 29072128 3.360000e-154 555.0
8 TraesCS2B01G591400 chr2B 77.791 815 107 47 1912 2669 581242954 581242157 4.560000e-118 435.0
9 TraesCS2B01G591400 chr4D 93.499 1369 57 6 14 1373 26191451 26192796 0.000000e+00 2006.0
10 TraesCS2B01G591400 chr4D 90.200 1000 46 22 1704 2674 26202517 26203493 0.000000e+00 1256.0
11 TraesCS2B01G591400 chr4A 90.856 1378 94 16 7 1373 645738452 645737096 0.000000e+00 1818.0
12 TraesCS2B01G591400 chr4A 90.711 1378 96 16 7 1373 645770993 645769637 0.000000e+00 1807.0
13 TraesCS2B01G591400 chr4A 93.656 662 41 1 1372 2032 645768259 645767598 0.000000e+00 989.0
14 TraesCS2B01G591400 chr4A 93.353 662 43 1 1372 2032 645735720 645735059 0.000000e+00 977.0
15 TraesCS2B01G591400 chr4B 90.856 1367 65 19 14 1373 38606200 38607513 0.000000e+00 1777.0
16 TraesCS2B01G591400 chr4B 83.321 1367 140 50 1371 2670 534717731 534719076 0.000000e+00 1181.0
17 TraesCS2B01G591400 chr4B 88.054 971 77 25 1372 2317 411179195 411178239 0.000000e+00 1114.0
18 TraesCS2B01G591400 chr4B 91.393 488 40 1 888 1373 411181197 411180710 0.000000e+00 667.0
19 TraesCS2B01G591400 chr4B 93.802 242 14 1 2434 2674 38622310 38622551 2.180000e-96 363.0
20 TraesCS2B01G591400 chr3A 83.057 1387 142 56 1371 2684 671025245 671023879 0.000000e+00 1173.0
21 TraesCS2B01G591400 chr3D 86.804 1023 94 27 1371 2372 49963875 49964877 0.000000e+00 1103.0
22 TraesCS2B01G591400 chr6B 88.008 959 79 21 1372 2318 127848512 127847578 0.000000e+00 1101.0
23 TraesCS2B01G591400 chr6B 98.413 315 5 0 2668 2982 42375353 42375039 3.360000e-154 555.0
24 TraesCS2B01G591400 chr6B 98.413 315 5 0 2668 2982 163649250 163648936 3.360000e-154 555.0
25 TraesCS2B01G591400 chr6B 87.500 64 7 1 16 78 370127844 370127781 4.120000e-09 73.1
26 TraesCS2B01G591400 chr1B 87.866 956 87 17 1372 2318 7320090 7319155 0.000000e+00 1096.0
27 TraesCS2B01G591400 chr2D 86.372 1042 94 28 1371 2381 621362921 621363945 0.000000e+00 1094.0
28 TraesCS2B01G591400 chr2D 91.411 489 39 1 888 1373 621360918 621361406 0.000000e+00 667.0
29 TraesCS2B01G591400 chr7A 90.029 692 68 1 1371 2061 683626875 683627566 0.000000e+00 894.0
30 TraesCS2B01G591400 chr7A 88.968 281 29 2 2387 2665 683627821 683628101 2.200000e-91 346.0
31 TraesCS2B01G591400 chr6D 90.354 508 47 2 867 1373 61814835 61814329 0.000000e+00 665.0
32 TraesCS2B01G591400 chr6D 76.682 223 43 8 18 236 162157889 162157672 6.750000e-22 115.0
33 TraesCS2B01G591400 chr1D 89.648 512 53 0 862 1373 108681468 108680957 0.000000e+00 652.0
34 TraesCS2B01G591400 chr1D 81.329 632 73 20 2078 2669 108679464 108678838 3.480000e-129 472.0
35 TraesCS2B01G591400 chr3B 100.000 315 0 0 2668 2982 23851447 23851133 1.540000e-162 582.0
36 TraesCS2B01G591400 chr3B 99.048 315 3 0 2668 2982 798180008 798180322 1.550000e-157 566.0
37 TraesCS2B01G591400 chr5B 98.413 315 5 0 2668 2982 626289713 626289399 3.360000e-154 555.0
38 TraesCS2B01G591400 chr5B 98.095 315 6 0 2668 2982 619130793 619130479 1.560000e-152 549.0
39 TraesCS2B01G591400 chr5B 86.095 338 33 6 2340 2664 542676794 542677130 4.730000e-93 351.0
40 TraesCS2B01G591400 chrUn 78.706 742 101 35 1966 2671 15859136 15859856 2.730000e-120 442.0
41 TraesCS2B01G591400 chr2A 88.014 292 27 3 2384 2668 719359067 719359357 3.680000e-89 339.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G591400 chr2B 776821232 776824213 2981 False 5507.0 5507 100.0000 1 2982 1 chr2B.!!$F2 2981
1 TraesCS2B01G591400 chr2B 171099006 171101761 2755 False 1440.0 1777 91.0020 16 2207 2 chr2B.!!$F3 2191
2 TraesCS2B01G591400 chr2B 600079414 600082346 2932 False 888.0 1105 89.8280 888 2317 2 chr2B.!!$F4 1429
3 TraesCS2B01G591400 chr2B 581242157 581242954 797 True 435.0 435 77.7910 1912 2669 1 chr2B.!!$R3 757
4 TraesCS2B01G591400 chr4D 26191451 26192796 1345 False 2006.0 2006 93.4990 14 1373 1 chr4D.!!$F1 1359
5 TraesCS2B01G591400 chr4D 26202517 26203493 976 False 1256.0 1256 90.2000 1704 2674 1 chr4D.!!$F2 970
6 TraesCS2B01G591400 chr4A 645767598 645770993 3395 True 1398.0 1807 92.1835 7 2032 2 chr4A.!!$R2 2025
7 TraesCS2B01G591400 chr4A 645735059 645738452 3393 True 1397.5 1818 92.1045 7 2032 2 chr4A.!!$R1 2025
8 TraesCS2B01G591400 chr4B 38606200 38607513 1313 False 1777.0 1777 90.8560 14 1373 1 chr4B.!!$F1 1359
9 TraesCS2B01G591400 chr4B 534717731 534719076 1345 False 1181.0 1181 83.3210 1371 2670 1 chr4B.!!$F3 1299
10 TraesCS2B01G591400 chr4B 411178239 411181197 2958 True 890.5 1114 89.7235 888 2317 2 chr4B.!!$R1 1429
11 TraesCS2B01G591400 chr3A 671023879 671025245 1366 True 1173.0 1173 83.0570 1371 2684 1 chr3A.!!$R1 1313
12 TraesCS2B01G591400 chr3D 49963875 49964877 1002 False 1103.0 1103 86.8040 1371 2372 1 chr3D.!!$F1 1001
13 TraesCS2B01G591400 chr6B 127847578 127848512 934 True 1101.0 1101 88.0080 1372 2318 1 chr6B.!!$R2 946
14 TraesCS2B01G591400 chr1B 7319155 7320090 935 True 1096.0 1096 87.8660 1372 2318 1 chr1B.!!$R1 946
15 TraesCS2B01G591400 chr2D 621360918 621363945 3027 False 880.5 1094 88.8915 888 2381 2 chr2D.!!$F1 1493
16 TraesCS2B01G591400 chr7A 683626875 683628101 1226 False 620.0 894 89.4985 1371 2665 2 chr7A.!!$F1 1294
17 TraesCS2B01G591400 chr6D 61814329 61814835 506 True 665.0 665 90.3540 867 1373 1 chr6D.!!$R1 506
18 TraesCS2B01G591400 chr1D 108678838 108681468 2630 True 562.0 652 85.4885 862 2669 2 chr1D.!!$R1 1807
19 TraesCS2B01G591400 chrUn 15859136 15859856 720 False 442.0 442 78.7060 1966 2671 1 chrUn.!!$F1 705

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
617 656 0.030501 ATCGTCCCCTATCCCCAACA 60.031 55.0 0.0 0.0 0.0 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2250 4176 0.035725 ATCAGCAGCAGCAGCACTTA 60.036 50.0 12.92 0.0 45.49 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 9.938280 CCAGATATTGATATTGGCATTGAATTT 57.062 29.630 0.00 0.00 0.00 1.82
107 108 0.755686 AGATGGTCAGGGAATCGAGC 59.244 55.000 0.00 0.00 0.00 5.03
166 167 4.452733 CCCGCGTCTCTGTTCCCC 62.453 72.222 4.92 0.00 0.00 4.81
173 174 1.067142 CGTCTCTGTTCCCCAATTCGA 60.067 52.381 0.00 0.00 0.00 3.71
253 257 3.625745 GCTCCACGAAAGGAAAGGA 57.374 52.632 0.00 0.00 37.20 3.36
266 270 1.067776 GGAAAGGAAAGACTCGAGCGA 60.068 52.381 13.61 0.00 0.00 4.93
446 458 2.509336 GCCATCCACCTCGTGTCG 60.509 66.667 0.00 0.00 0.00 4.35
570 609 1.743252 GCCACTTCTCCTCAAGCCG 60.743 63.158 0.00 0.00 0.00 5.52
571 610 1.078848 CCACTTCTCCTCAAGCCGG 60.079 63.158 0.00 0.00 0.00 6.13
572 611 1.078848 CACTTCTCCTCAAGCCGGG 60.079 63.158 2.18 0.00 0.00 5.73
573 612 2.124942 CTTCTCCTCAAGCCGGGC 60.125 66.667 12.11 12.11 0.00 6.13
574 613 3.689002 CTTCTCCTCAAGCCGGGCC 62.689 68.421 17.02 0.00 0.00 5.80
576 615 4.785453 CTCCTCAAGCCGGGCCAC 62.785 72.222 17.02 0.00 0.00 5.01
578 617 4.351054 CCTCAAGCCGGGCCACTT 62.351 66.667 17.02 3.24 0.00 3.16
579 618 2.747855 CTCAAGCCGGGCCACTTC 60.748 66.667 17.02 0.00 0.00 3.01
580 619 3.249189 TCAAGCCGGGCCACTTCT 61.249 61.111 17.02 0.00 0.00 2.85
581 620 2.747855 CAAGCCGGGCCACTTCTC 60.748 66.667 17.02 0.00 0.00 2.87
582 621 4.035102 AAGCCGGGCCACTTCTCC 62.035 66.667 17.02 0.00 0.00 3.71
584 623 4.475135 GCCGGGCCACTTCTCCTC 62.475 72.222 8.12 0.00 0.00 3.71
585 624 3.003173 CCGGGCCACTTCTCCTCA 61.003 66.667 4.39 0.00 0.00 3.86
586 625 2.592993 CCGGGCCACTTCTCCTCAA 61.593 63.158 4.39 0.00 0.00 3.02
587 626 1.078848 CGGGCCACTTCTCCTCAAG 60.079 63.158 4.39 0.00 0.00 3.02
588 627 1.377856 GGGCCACTTCTCCTCAAGC 60.378 63.158 4.39 0.00 0.00 4.01
589 628 1.377856 GGCCACTTCTCCTCAAGCC 60.378 63.158 0.00 0.00 0.00 4.35
615 654 0.766674 CCATCGTCCCCTATCCCCAA 60.767 60.000 0.00 0.00 0.00 4.12
617 656 0.030501 ATCGTCCCCTATCCCCAACA 60.031 55.000 0.00 0.00 0.00 3.33
681 720 7.719193 CCACCCATATGTGTTTGATTACTCATA 59.281 37.037 1.24 0.00 38.27 2.15
1056 1101 9.285359 AGGAGAAAGAGGAAAAGGATAATCTTA 57.715 33.333 0.00 0.00 0.00 2.10
1152 1197 6.314648 CAGCTAGTTTTAGTGATGATGAGCAA 59.685 38.462 0.00 0.00 0.00 3.91
1284 1329 1.080434 GCGTGAGAGGTGTGGTCTC 60.080 63.158 0.00 0.00 40.87 3.36
1288 1333 2.997897 AGAGGTGTGGTCTCCGCC 60.998 66.667 0.00 0.00 32.22 6.13
1332 1377 5.357742 AAGAAAAGGTTGCCATGTTCTTT 57.642 34.783 0.00 0.00 31.09 2.52
1599 3196 9.590451 CAATTTGCACAATATACTCCAAAGATT 57.410 29.630 0.00 0.00 0.00 2.40
1623 3220 1.178534 AACCGGTGAAGGTGCAATGG 61.179 55.000 8.52 0.00 45.21 3.16
1724 3321 0.673985 AGCGAACAGGCGATGCTATA 59.326 50.000 0.00 0.00 38.18 1.31
1730 3327 3.751479 ACAGGCGATGCTATATTGTGA 57.249 42.857 0.00 0.00 0.00 3.58
1857 3455 0.693049 ATCCCAGACTTGGCTCGTTT 59.307 50.000 0.00 0.00 43.58 3.60
1885 3483 4.006989 TGTTGCGAGCATATGGTAAACTT 58.993 39.130 19.80 0.00 0.00 2.66
2051 3659 3.826524 TGAACTTGCTGGACCAATTACA 58.173 40.909 0.00 0.00 0.00 2.41
2052 3660 3.820467 TGAACTTGCTGGACCAATTACAG 59.180 43.478 0.00 0.00 35.40 2.74
2107 3804 8.902540 TTCCTATATTATGTGTTGTTGGCTAG 57.097 34.615 0.00 0.00 0.00 3.42
2177 4103 4.384940 TGTATTTGTGCTGCTGTACAAGA 58.615 39.130 22.26 15.58 46.31 3.02
2182 4108 2.158971 TGTGCTGCTGTACAAGAGTTGA 60.159 45.455 11.91 0.00 35.92 3.18
2207 4133 2.097304 TGCTGTTGTGTAAGTGTTGCTG 59.903 45.455 0.00 0.00 0.00 4.41
2208 4134 2.719798 CTGTTGTGTAAGTGTTGCTGC 58.280 47.619 0.00 0.00 0.00 5.25
2209 4135 2.355756 CTGTTGTGTAAGTGTTGCTGCT 59.644 45.455 0.00 0.00 0.00 4.24
2210 4136 2.097304 TGTTGTGTAAGTGTTGCTGCTG 59.903 45.455 0.00 0.00 0.00 4.41
2211 4137 2.036958 TGTGTAAGTGTTGCTGCTGT 57.963 45.000 0.00 0.00 0.00 4.40
2212 4138 2.364632 TGTGTAAGTGTTGCTGCTGTT 58.635 42.857 0.00 0.00 0.00 3.16
2213 4139 2.097304 TGTGTAAGTGTTGCTGCTGTTG 59.903 45.455 0.00 0.00 0.00 3.33
2214 4140 2.097466 GTGTAAGTGTTGCTGCTGTTGT 59.903 45.455 0.00 0.00 0.00 3.32
2215 4141 3.311322 GTGTAAGTGTTGCTGCTGTTGTA 59.689 43.478 0.00 0.00 0.00 2.41
2216 4142 4.024048 GTGTAAGTGTTGCTGCTGTTGTAT 60.024 41.667 0.00 0.00 0.00 2.29
2217 4143 4.578516 TGTAAGTGTTGCTGCTGTTGTATT 59.421 37.500 0.00 0.00 0.00 1.89
2218 4144 5.760743 TGTAAGTGTTGCTGCTGTTGTATTA 59.239 36.000 0.00 0.00 0.00 0.98
2219 4145 5.362556 AAGTGTTGCTGCTGTTGTATTAG 57.637 39.130 0.00 0.00 0.00 1.73
2220 4146 4.389374 AGTGTTGCTGCTGTTGTATTAGT 58.611 39.130 0.00 0.00 0.00 2.24
2221 4147 4.214119 AGTGTTGCTGCTGTTGTATTAGTG 59.786 41.667 0.00 0.00 0.00 2.74
2222 4148 3.058293 TGTTGCTGCTGTTGTATTAGTGC 60.058 43.478 0.00 0.00 0.00 4.40
2223 4149 2.083774 TGCTGCTGTTGTATTAGTGCC 58.916 47.619 0.00 0.00 0.00 5.01
2224 4150 1.062587 GCTGCTGTTGTATTAGTGCCG 59.937 52.381 0.00 0.00 0.00 5.69
2225 4151 2.346803 CTGCTGTTGTATTAGTGCCGT 58.653 47.619 0.00 0.00 0.00 5.68
2226 4152 2.742053 CTGCTGTTGTATTAGTGCCGTT 59.258 45.455 0.00 0.00 0.00 4.44
2227 4153 2.482336 TGCTGTTGTATTAGTGCCGTTG 59.518 45.455 0.00 0.00 0.00 4.10
2228 4154 2.482721 GCTGTTGTATTAGTGCCGTTGT 59.517 45.455 0.00 0.00 0.00 3.32
2229 4155 3.680937 GCTGTTGTATTAGTGCCGTTGTA 59.319 43.478 0.00 0.00 0.00 2.41
2230 4156 4.435121 GCTGTTGTATTAGTGCCGTTGTAC 60.435 45.833 0.00 0.00 0.00 2.90
2231 4157 4.629092 TGTTGTATTAGTGCCGTTGTACA 58.371 39.130 0.00 0.00 0.00 2.90
2232 4158 5.055144 TGTTGTATTAGTGCCGTTGTACAA 58.945 37.500 3.59 3.59 31.75 2.41
2233 4159 5.050227 TGTTGTATTAGTGCCGTTGTACAAC 60.050 40.000 25.73 25.73 45.84 3.32
2234 4160 4.885413 TGTATTAGTGCCGTTGTACAACT 58.115 39.130 30.47 17.52 39.08 3.16
2235 4161 4.687018 TGTATTAGTGCCGTTGTACAACTG 59.313 41.667 30.47 26.13 39.08 3.16
2236 4162 2.894763 TAGTGCCGTTGTACAACTGT 57.105 45.000 30.47 14.75 39.08 3.55
2237 4163 2.032680 AGTGCCGTTGTACAACTGTT 57.967 45.000 30.47 14.79 39.08 3.16
2238 4164 1.668751 AGTGCCGTTGTACAACTGTTG 59.331 47.619 30.47 18.44 39.08 3.33
2239 4165 0.378962 TGCCGTTGTACAACTGTTGC 59.621 50.000 30.47 25.67 39.08 4.17
2240 4166 0.661020 GCCGTTGTACAACTGTTGCT 59.339 50.000 30.47 10.03 39.08 3.91
2241 4167 1.596954 GCCGTTGTACAACTGTTGCTG 60.597 52.381 30.47 16.23 39.08 4.41
2242 4168 1.596954 CCGTTGTACAACTGTTGCTGC 60.597 52.381 30.47 11.21 39.08 5.25
2243 4169 1.330521 CGTTGTACAACTGTTGCTGCT 59.669 47.619 30.47 3.66 39.08 4.24
2244 4170 2.719798 GTTGTACAACTGTTGCTGCTG 58.280 47.619 27.69 0.00 38.25 4.41
2245 4171 2.036958 TGTACAACTGTTGCTGCTGT 57.963 45.000 19.82 3.19 0.00 4.40
2246 4172 2.364632 TGTACAACTGTTGCTGCTGTT 58.635 42.857 19.82 1.87 0.00 3.16
2247 4173 2.354510 TGTACAACTGTTGCTGCTGTTC 59.645 45.455 19.82 0.00 0.00 3.18
2248 4174 1.755179 ACAACTGTTGCTGCTGTTCT 58.245 45.000 19.82 0.00 0.00 3.01
2249 4175 2.094675 ACAACTGTTGCTGCTGTTCTT 58.905 42.857 19.82 0.00 0.00 2.52
2250 4176 2.493278 ACAACTGTTGCTGCTGTTCTTT 59.507 40.909 19.82 0.00 0.00 2.52
2251 4177 3.694072 ACAACTGTTGCTGCTGTTCTTTA 59.306 39.130 19.82 0.00 0.00 1.85
2252 4178 4.157656 ACAACTGTTGCTGCTGTTCTTTAA 59.842 37.500 19.82 0.00 0.00 1.52
2253 4179 4.558538 ACTGTTGCTGCTGTTCTTTAAG 57.441 40.909 0.00 0.00 0.00 1.85
2254 4180 3.947834 ACTGTTGCTGCTGTTCTTTAAGT 59.052 39.130 0.00 0.00 0.00 2.24
2255 4181 4.201950 ACTGTTGCTGCTGTTCTTTAAGTG 60.202 41.667 0.00 0.00 0.00 3.16
2256 4182 3.045688 GTTGCTGCTGTTCTTTAAGTGC 58.954 45.455 0.00 0.00 0.00 4.40
2257 4183 2.575532 TGCTGCTGTTCTTTAAGTGCT 58.424 42.857 0.00 0.00 0.00 4.40
2258 4184 2.291465 TGCTGCTGTTCTTTAAGTGCTG 59.709 45.455 0.00 0.00 0.00 4.41
2259 4185 2.919807 GCTGCTGTTCTTTAAGTGCTGC 60.920 50.000 13.26 13.26 37.96 5.25
2260 4186 2.551459 CTGCTGTTCTTTAAGTGCTGCT 59.449 45.455 0.00 0.00 0.00 4.24
2261 4187 2.291465 TGCTGTTCTTTAAGTGCTGCTG 59.709 45.455 0.00 0.00 0.00 4.41
2262 4188 2.919807 GCTGTTCTTTAAGTGCTGCTGC 60.920 50.000 8.89 8.89 40.20 5.25
2263 4189 2.551459 CTGTTCTTTAAGTGCTGCTGCT 59.449 45.455 17.00 0.00 40.48 4.24
2264 4190 2.291465 TGTTCTTTAAGTGCTGCTGCTG 59.709 45.455 17.00 0.77 40.48 4.41
2265 4191 0.877071 TCTTTAAGTGCTGCTGCTGC 59.123 50.000 22.51 22.51 40.48 5.25
2266 4192 0.879765 CTTTAAGTGCTGCTGCTGCT 59.120 50.000 27.67 13.59 40.48 4.24
2267 4193 0.594602 TTTAAGTGCTGCTGCTGCTG 59.405 50.000 27.67 16.73 40.48 4.41
2287 4213 0.107361 ATATGTGCTGCTGCTGCTGA 60.107 50.000 27.67 16.57 40.01 4.26
2306 4236 5.467735 TGCTGAATAAGTGCTGCTATGTATG 59.532 40.000 0.00 0.00 0.00 2.39
2309 4239 5.237127 TGAATAAGTGCTGCTATGTATGTGC 59.763 40.000 0.00 0.00 0.00 4.57
2310 4240 2.996249 AGTGCTGCTATGTATGTGCT 57.004 45.000 0.00 0.00 0.00 4.40
2311 4241 2.558378 AGTGCTGCTATGTATGTGCTG 58.442 47.619 0.00 0.00 0.00 4.41
2312 4242 1.003116 GTGCTGCTATGTATGTGCTGC 60.003 52.381 0.00 8.67 46.71 5.25
2313 4243 1.134310 TGCTGCTATGTATGTGCTGCT 60.134 47.619 14.79 0.00 46.67 4.24
2314 4244 1.263484 GCTGCTATGTATGTGCTGCTG 59.737 52.381 0.00 0.00 44.40 4.41
2472 4691 8.099537 AGAGTTCAGTTTTCATCATATGACAGT 58.900 33.333 7.78 0.00 39.39 3.55
2515 4758 2.238521 TGACCATCCAAACAAGCTTCC 58.761 47.619 0.00 0.00 0.00 3.46
2671 4914 5.587289 TCAACATCCAAACAAAGTGTAAGC 58.413 37.500 0.00 0.00 0.00 3.09
2672 4915 5.126222 TCAACATCCAAACAAAGTGTAAGCA 59.874 36.000 0.00 0.00 0.00 3.91
2674 4917 5.591099 ACATCCAAACAAAGTGTAAGCAAG 58.409 37.500 0.00 0.00 0.00 4.01
2675 4918 4.647424 TCCAAACAAAGTGTAAGCAAGG 57.353 40.909 0.00 0.00 0.00 3.61
2677 4920 4.464597 TCCAAACAAAGTGTAAGCAAGGTT 59.535 37.500 0.00 0.00 0.00 3.50
2678 4921 5.046950 TCCAAACAAAGTGTAAGCAAGGTTT 60.047 36.000 0.00 0.00 0.00 3.27
2679 4922 5.063312 CCAAACAAAGTGTAAGCAAGGTTTG 59.937 40.000 0.00 0.00 41.90 2.93
2680 4923 4.385358 ACAAAGTGTAAGCAAGGTTTGG 57.615 40.909 0.00 0.00 31.57 3.28
2682 4925 4.951094 ACAAAGTGTAAGCAAGGTTTGGTA 59.049 37.500 0.00 0.00 41.14 3.25
2683 4926 5.596772 ACAAAGTGTAAGCAAGGTTTGGTAT 59.403 36.000 0.00 0.00 41.14 2.73
2684 4927 5.705609 AAGTGTAAGCAAGGTTTGGTATG 57.294 39.130 0.00 0.00 41.14 2.39
2687 4930 6.717289 AGTGTAAGCAAGGTTTGGTATGATA 58.283 36.000 0.00 0.00 41.14 2.15
2688 4931 6.823689 AGTGTAAGCAAGGTTTGGTATGATAG 59.176 38.462 0.00 0.00 41.14 2.08
2689 4932 6.821665 GTGTAAGCAAGGTTTGGTATGATAGA 59.178 38.462 0.00 0.00 41.14 1.98
2690 4933 7.335924 GTGTAAGCAAGGTTTGGTATGATAGAA 59.664 37.037 0.00 0.00 41.14 2.10
2691 4934 7.885922 TGTAAGCAAGGTTTGGTATGATAGAAA 59.114 33.333 0.00 0.00 41.14 2.52
2692 4935 6.759497 AGCAAGGTTTGGTATGATAGAAAC 57.241 37.500 0.00 0.00 40.04 2.78
2693 4936 5.652452 AGCAAGGTTTGGTATGATAGAAACC 59.348 40.000 14.18 14.18 45.19 3.27
2694 4937 5.417580 GCAAGGTTTGGTATGATAGAAACCA 59.582 40.000 20.18 5.11 46.60 3.67
2701 4944 6.757897 TGGTATGATAGAAACCAAAAGCAG 57.242 37.500 0.00 0.00 40.28 4.24
2702 4945 5.652014 TGGTATGATAGAAACCAAAAGCAGG 59.348 40.000 0.00 0.00 40.28 4.85
2703 4946 4.725790 ATGATAGAAACCAAAAGCAGGC 57.274 40.909 0.00 0.00 0.00 4.85
2704 4947 2.825532 TGATAGAAACCAAAAGCAGGCC 59.174 45.455 0.00 0.00 0.00 5.19
2705 4948 2.373335 TAGAAACCAAAAGCAGGCCA 57.627 45.000 5.01 0.00 0.00 5.36
2706 4949 1.720781 AGAAACCAAAAGCAGGCCAT 58.279 45.000 5.01 0.00 0.00 4.40
2707 4950 2.888212 AGAAACCAAAAGCAGGCCATA 58.112 42.857 5.01 0.00 0.00 2.74
2708 4951 2.827921 AGAAACCAAAAGCAGGCCATAG 59.172 45.455 5.01 0.00 0.00 2.23
2709 4952 0.897621 AACCAAAAGCAGGCCATAGC 59.102 50.000 5.01 6.06 38.76 2.97
2710 4953 0.251742 ACCAAAAGCAGGCCATAGCA 60.252 50.000 5.01 0.00 42.56 3.49
2711 4954 0.458669 CCAAAAGCAGGCCATAGCAG 59.541 55.000 5.01 0.00 42.56 4.24
2712 4955 1.180029 CAAAAGCAGGCCATAGCAGT 58.820 50.000 5.01 0.00 42.56 4.40
2713 4956 2.368439 CAAAAGCAGGCCATAGCAGTA 58.632 47.619 5.01 0.00 42.56 2.74
2714 4957 2.954318 CAAAAGCAGGCCATAGCAGTAT 59.046 45.455 5.01 0.00 42.56 2.12
2715 4958 3.303351 AAAGCAGGCCATAGCAGTATT 57.697 42.857 5.01 0.00 42.56 1.89
2716 4959 4.437682 AAAGCAGGCCATAGCAGTATTA 57.562 40.909 5.01 0.00 42.56 0.98
2717 4960 3.692257 AGCAGGCCATAGCAGTATTAG 57.308 47.619 5.01 0.00 42.56 1.73
2718 4961 2.975489 AGCAGGCCATAGCAGTATTAGT 59.025 45.455 5.01 0.00 42.56 2.24
2719 4962 3.007398 AGCAGGCCATAGCAGTATTAGTC 59.993 47.826 5.01 0.00 42.56 2.59
2720 4963 3.007398 GCAGGCCATAGCAGTATTAGTCT 59.993 47.826 5.01 0.00 42.56 3.24
2721 4964 4.815269 CAGGCCATAGCAGTATTAGTCTC 58.185 47.826 5.01 0.00 42.56 3.36
2722 4965 4.281941 CAGGCCATAGCAGTATTAGTCTCA 59.718 45.833 5.01 0.00 42.56 3.27
2723 4966 4.526262 AGGCCATAGCAGTATTAGTCTCAG 59.474 45.833 5.01 0.00 42.56 3.35
2724 4967 4.524714 GGCCATAGCAGTATTAGTCTCAGA 59.475 45.833 0.00 0.00 42.56 3.27
2725 4968 5.186797 GGCCATAGCAGTATTAGTCTCAGAT 59.813 44.000 0.00 0.00 42.56 2.90
2726 4969 6.378564 GGCCATAGCAGTATTAGTCTCAGATA 59.621 42.308 0.00 0.00 42.56 1.98
2727 4970 7.093727 GGCCATAGCAGTATTAGTCTCAGATAA 60.094 40.741 0.00 0.00 42.56 1.75
2728 4971 7.757624 GCCATAGCAGTATTAGTCTCAGATAAC 59.242 40.741 0.00 0.00 39.53 1.89
2729 4972 9.019656 CCATAGCAGTATTAGTCTCAGATAACT 57.980 37.037 0.00 0.00 0.00 2.24
2753 4996 9.893305 ACTTATTTACACTGTTTTTCATACTGC 57.107 29.630 0.00 0.00 0.00 4.40
2754 4997 9.891828 CTTATTTACACTGTTTTTCATACTGCA 57.108 29.630 0.00 0.00 0.00 4.41
2761 5004 9.231297 ACACTGTTTTTCATACTGCATAATAGT 57.769 29.630 0.00 0.00 0.00 2.12
2775 5018 9.109393 ACTGCATAATAGTAAACTACATGGTTG 57.891 33.333 0.00 0.00 30.65 3.77
2776 5019 9.325198 CTGCATAATAGTAAACTACATGGTTGA 57.675 33.333 0.00 0.00 30.65 3.18
2777 5020 9.104965 TGCATAATAGTAAACTACATGGTTGAC 57.895 33.333 0.00 0.00 32.25 3.18
2778 5021 9.326413 GCATAATAGTAAACTACATGGTTGACT 57.674 33.333 9.15 9.15 41.97 3.41
2783 5026 9.871238 ATAGTAAACTACATGGTTGACTGTTAG 57.129 33.333 12.70 0.00 40.15 2.34
2784 5027 7.959175 AGTAAACTACATGGTTGACTGTTAGA 58.041 34.615 4.53 0.00 38.91 2.10
2785 5028 8.594550 AGTAAACTACATGGTTGACTGTTAGAT 58.405 33.333 4.53 0.00 38.91 1.98
2786 5029 9.865321 GTAAACTACATGGTTGACTGTTAGATA 57.135 33.333 0.00 0.00 30.13 1.98
2804 5047 9.524106 TGTTAGATATATAACTTTGTCCACACG 57.476 33.333 18.41 0.00 36.73 4.49
2805 5048 8.485591 GTTAGATATATAACTTTGTCCACACGC 58.514 37.037 12.06 0.00 33.67 5.34
2806 5049 5.989777 AGATATATAACTTTGTCCACACGCC 59.010 40.000 0.00 0.00 0.00 5.68
2807 5050 2.561478 ATAACTTTGTCCACACGCCT 57.439 45.000 0.00 0.00 0.00 5.52
2808 5051 2.335316 TAACTTTGTCCACACGCCTT 57.665 45.000 0.00 0.00 0.00 4.35
2809 5052 1.021968 AACTTTGTCCACACGCCTTC 58.978 50.000 0.00 0.00 0.00 3.46
2810 5053 0.107410 ACTTTGTCCACACGCCTTCA 60.107 50.000 0.00 0.00 0.00 3.02
2811 5054 1.238439 CTTTGTCCACACGCCTTCAT 58.762 50.000 0.00 0.00 0.00 2.57
2812 5055 1.197721 CTTTGTCCACACGCCTTCATC 59.802 52.381 0.00 0.00 0.00 2.92
2813 5056 0.605319 TTGTCCACACGCCTTCATCC 60.605 55.000 0.00 0.00 0.00 3.51
2814 5057 2.100631 GTCCACACGCCTTCATCCG 61.101 63.158 0.00 0.00 0.00 4.18
2815 5058 2.264480 CCACACGCCTTCATCCGA 59.736 61.111 0.00 0.00 0.00 4.55
2816 5059 1.153369 CCACACGCCTTCATCCGAT 60.153 57.895 0.00 0.00 0.00 4.18
2817 5060 0.744414 CCACACGCCTTCATCCGATT 60.744 55.000 0.00 0.00 0.00 3.34
2818 5061 1.086696 CACACGCCTTCATCCGATTT 58.913 50.000 0.00 0.00 0.00 2.17
2819 5062 1.086696 ACACGCCTTCATCCGATTTG 58.913 50.000 0.00 0.00 0.00 2.32
2820 5063 0.248215 CACGCCTTCATCCGATTTGC 60.248 55.000 0.00 0.00 0.00 3.68
2821 5064 0.392998 ACGCCTTCATCCGATTTGCT 60.393 50.000 0.00 0.00 0.00 3.91
2822 5065 0.734889 CGCCTTCATCCGATTTGCTT 59.265 50.000 0.00 0.00 0.00 3.91
2823 5066 1.532505 CGCCTTCATCCGATTTGCTTG 60.533 52.381 0.00 0.00 0.00 4.01
2824 5067 1.745087 GCCTTCATCCGATTTGCTTGA 59.255 47.619 0.00 0.00 0.00 3.02
2825 5068 2.360165 GCCTTCATCCGATTTGCTTGAT 59.640 45.455 0.00 0.00 0.00 2.57
2826 5069 3.565482 GCCTTCATCCGATTTGCTTGATA 59.435 43.478 0.00 0.00 0.00 2.15
2827 5070 4.217118 GCCTTCATCCGATTTGCTTGATAT 59.783 41.667 0.00 0.00 0.00 1.63
2828 5071 5.412594 GCCTTCATCCGATTTGCTTGATATA 59.587 40.000 0.00 0.00 0.00 0.86
2829 5072 6.094603 GCCTTCATCCGATTTGCTTGATATAT 59.905 38.462 0.00 0.00 0.00 0.86
2830 5073 7.280876 GCCTTCATCCGATTTGCTTGATATATA 59.719 37.037 0.00 0.00 0.00 0.86
2831 5074 9.166173 CCTTCATCCGATTTGCTTGATATATAA 57.834 33.333 0.00 0.00 0.00 0.98
2832 5075 9.979270 CTTCATCCGATTTGCTTGATATATAAC 57.021 33.333 0.00 0.00 0.00 1.89
2833 5076 9.725019 TTCATCCGATTTGCTTGATATATAACT 57.275 29.630 0.00 0.00 0.00 2.24
2834 5077 9.725019 TCATCCGATTTGCTTGATATATAACTT 57.275 29.630 0.00 0.00 0.00 2.66
2837 5080 9.337396 TCCGATTTGCTTGATATATAACTTTGT 57.663 29.630 0.00 0.00 0.00 2.83
2838 5081 9.599322 CCGATTTGCTTGATATATAACTTTGTC 57.401 33.333 0.00 0.00 0.00 3.18
2839 5082 9.599322 CGATTTGCTTGATATATAACTTTGTCC 57.401 33.333 0.00 0.00 0.00 4.02
2842 5085 8.800370 TTGCTTGATATATAACTTTGTCCACA 57.200 30.769 0.00 0.00 0.00 4.17
2843 5086 8.208718 TGCTTGATATATAACTTTGTCCACAC 57.791 34.615 0.00 0.00 0.00 3.82
2844 5087 8.046708 TGCTTGATATATAACTTTGTCCACACT 58.953 33.333 0.00 0.00 0.00 3.55
2845 5088 8.552034 GCTTGATATATAACTTTGTCCACACTC 58.448 37.037 0.00 0.00 0.00 3.51
2846 5089 8.958119 TTGATATATAACTTTGTCCACACTCC 57.042 34.615 0.00 0.00 0.00 3.85
2847 5090 8.319057 TGATATATAACTTTGTCCACACTCCT 57.681 34.615 0.00 0.00 0.00 3.69
2848 5091 8.768397 TGATATATAACTTTGTCCACACTCCTT 58.232 33.333 0.00 0.00 0.00 3.36
2849 5092 9.262358 GATATATAACTTTGTCCACACTCCTTC 57.738 37.037 0.00 0.00 0.00 3.46
2850 5093 3.644966 AACTTTGTCCACACTCCTTCA 57.355 42.857 0.00 0.00 0.00 3.02
2851 5094 3.864789 ACTTTGTCCACACTCCTTCAT 57.135 42.857 0.00 0.00 0.00 2.57
2852 5095 4.170468 ACTTTGTCCACACTCCTTCATT 57.830 40.909 0.00 0.00 0.00 2.57
2853 5096 4.536765 ACTTTGTCCACACTCCTTCATTT 58.463 39.130 0.00 0.00 0.00 2.32
2854 5097 4.339247 ACTTTGTCCACACTCCTTCATTTG 59.661 41.667 0.00 0.00 0.00 2.32
2855 5098 3.855255 TGTCCACACTCCTTCATTTGA 57.145 42.857 0.00 0.00 0.00 2.69
2856 5099 4.371624 TGTCCACACTCCTTCATTTGAT 57.628 40.909 0.00 0.00 0.00 2.57
2857 5100 4.728772 TGTCCACACTCCTTCATTTGATT 58.271 39.130 0.00 0.00 0.00 2.57
2858 5101 5.139727 TGTCCACACTCCTTCATTTGATTT 58.860 37.500 0.00 0.00 0.00 2.17
2859 5102 5.009911 TGTCCACACTCCTTCATTTGATTTG 59.990 40.000 0.00 0.00 0.00 2.32
2860 5103 4.022068 TCCACACTCCTTCATTTGATTTGC 60.022 41.667 0.00 0.00 0.00 3.68
2861 5104 4.021719 CCACACTCCTTCATTTGATTTGCT 60.022 41.667 0.00 0.00 0.00 3.91
2862 5105 5.510179 CCACACTCCTTCATTTGATTTGCTT 60.510 40.000 0.00 0.00 0.00 3.91
2863 5106 5.404366 CACACTCCTTCATTTGATTTGCTTG 59.596 40.000 0.00 0.00 0.00 4.01
2864 5107 4.387862 CACTCCTTCATTTGATTTGCTTGC 59.612 41.667 0.00 0.00 0.00 4.01
2865 5108 4.039488 ACTCCTTCATTTGATTTGCTTGCA 59.961 37.500 0.00 0.00 0.00 4.08
2866 5109 5.155278 TCCTTCATTTGATTTGCTTGCAT 57.845 34.783 0.00 0.00 0.00 3.96
2867 5110 4.932799 TCCTTCATTTGATTTGCTTGCATG 59.067 37.500 0.00 0.00 0.00 4.06
2868 5111 4.693566 CCTTCATTTGATTTGCTTGCATGT 59.306 37.500 1.14 0.00 0.00 3.21
2869 5112 5.180492 CCTTCATTTGATTTGCTTGCATGTT 59.820 36.000 1.14 0.00 0.00 2.71
2870 5113 5.599359 TCATTTGATTTGCTTGCATGTTG 57.401 34.783 1.14 0.00 0.00 3.33
2871 5114 3.881780 TTTGATTTGCTTGCATGTTGC 57.118 38.095 1.14 0.00 45.29 4.17
2880 5123 3.465753 GCATGTTGCAACGCATGG 58.534 55.556 23.79 12.19 44.26 3.66
2881 5124 1.080637 GCATGTTGCAACGCATGGA 60.081 52.632 23.79 6.29 44.26 3.41
2882 5125 0.458889 GCATGTTGCAACGCATGGAT 60.459 50.000 23.79 8.45 44.26 3.41
2883 5126 1.552226 CATGTTGCAACGCATGGATC 58.448 50.000 23.79 0.00 38.76 3.36
2884 5127 1.133598 CATGTTGCAACGCATGGATCT 59.866 47.619 23.79 0.00 38.76 2.75
2885 5128 0.522626 TGTTGCAACGCATGGATCTG 59.477 50.000 23.79 0.00 38.76 2.90
2886 5129 0.799534 GTTGCAACGCATGGATCTGC 60.800 55.000 14.90 0.00 38.76 4.26
2887 5130 0.961857 TTGCAACGCATGGATCTGCT 60.962 50.000 0.00 0.00 38.76 4.24
2888 5131 0.107752 TGCAACGCATGGATCTGCTA 60.108 50.000 5.51 0.00 40.06 3.49
2889 5132 1.016627 GCAACGCATGGATCTGCTAA 58.983 50.000 5.51 0.00 40.06 3.09
2890 5133 1.401552 GCAACGCATGGATCTGCTAAA 59.598 47.619 5.51 0.00 40.06 1.85
2891 5134 2.540361 GCAACGCATGGATCTGCTAAAG 60.540 50.000 5.51 0.00 40.06 1.85
2892 5135 1.959042 ACGCATGGATCTGCTAAAGG 58.041 50.000 5.51 0.00 40.06 3.11
2893 5136 1.486310 ACGCATGGATCTGCTAAAGGA 59.514 47.619 5.51 0.00 40.06 3.36
2894 5137 1.869767 CGCATGGATCTGCTAAAGGAC 59.130 52.381 5.51 0.00 40.06 3.85
2895 5138 2.742856 CGCATGGATCTGCTAAAGGACA 60.743 50.000 5.51 0.00 40.06 4.02
2896 5139 3.484407 GCATGGATCTGCTAAAGGACAT 58.516 45.455 0.00 0.00 39.12 3.06
2897 5140 3.252701 GCATGGATCTGCTAAAGGACATG 59.747 47.826 0.00 0.00 39.12 3.21
2898 5141 4.458397 CATGGATCTGCTAAAGGACATGT 58.542 43.478 0.00 0.00 32.15 3.21
2899 5142 4.142609 TGGATCTGCTAAAGGACATGTC 57.857 45.455 17.91 17.91 0.00 3.06
2900 5143 3.519107 TGGATCTGCTAAAGGACATGTCA 59.481 43.478 26.47 5.82 0.00 3.58
2901 5144 4.164796 TGGATCTGCTAAAGGACATGTCAT 59.835 41.667 26.47 18.11 0.00 3.06
2902 5145 4.514441 GGATCTGCTAAAGGACATGTCATG 59.486 45.833 26.47 11.41 0.00 3.07
2904 5147 4.910195 TCTGCTAAAGGACATGTCATGTT 58.090 39.130 26.47 17.91 45.03 2.71
2905 5148 6.048732 TCTGCTAAAGGACATGTCATGTTA 57.951 37.500 26.47 18.05 45.03 2.41
2906 5149 6.108687 TCTGCTAAAGGACATGTCATGTTAG 58.891 40.000 26.47 25.13 45.03 2.34
2907 5150 5.185454 TGCTAAAGGACATGTCATGTTAGG 58.815 41.667 26.47 10.16 45.03 2.69
2908 5151 4.035675 GCTAAAGGACATGTCATGTTAGGC 59.964 45.833 26.47 15.44 45.03 3.93
2909 5152 3.719268 AAGGACATGTCATGTTAGGCA 57.281 42.857 26.47 0.00 45.03 4.75
2910 5153 3.719268 AGGACATGTCATGTTAGGCAA 57.281 42.857 26.47 0.00 45.03 4.52
2911 5154 4.032960 AGGACATGTCATGTTAGGCAAA 57.967 40.909 26.47 0.00 45.03 3.68
2912 5155 3.758554 AGGACATGTCATGTTAGGCAAAC 59.241 43.478 26.47 4.43 45.03 2.93
2913 5156 3.758554 GGACATGTCATGTTAGGCAAACT 59.241 43.478 26.47 0.00 45.03 2.66
2914 5157 4.941263 GGACATGTCATGTTAGGCAAACTA 59.059 41.667 26.47 0.00 45.03 2.24
2915 5158 5.590259 GGACATGTCATGTTAGGCAAACTAT 59.410 40.000 26.47 0.00 45.03 2.12
2916 5159 6.095440 GGACATGTCATGTTAGGCAAACTATT 59.905 38.462 26.47 0.00 45.03 1.73
2917 5160 7.088589 ACATGTCATGTTAGGCAAACTATTC 57.911 36.000 12.87 0.00 41.63 1.75
2918 5161 6.658816 ACATGTCATGTTAGGCAAACTATTCA 59.341 34.615 12.87 0.00 41.63 2.57
2919 5162 7.176515 ACATGTCATGTTAGGCAAACTATTCAA 59.823 33.333 12.87 0.00 41.63 2.69
2920 5163 7.517614 TGTCATGTTAGGCAAACTATTCAAA 57.482 32.000 0.00 0.00 38.99 2.69
2921 5164 8.121305 TGTCATGTTAGGCAAACTATTCAAAT 57.879 30.769 0.00 0.00 38.99 2.32
2922 5165 9.237187 TGTCATGTTAGGCAAACTATTCAAATA 57.763 29.630 0.00 0.00 38.99 1.40
2923 5166 9.722056 GTCATGTTAGGCAAACTATTCAAATAG 57.278 33.333 7.98 7.98 43.15 1.73
2935 5178 6.220579 CTATTCAAATAGTGCGTCTCATGG 57.779 41.667 0.00 0.00 34.91 3.66
2936 5179 3.885724 TCAAATAGTGCGTCTCATGGA 57.114 42.857 0.00 0.00 0.00 3.41
2937 5180 3.521560 TCAAATAGTGCGTCTCATGGAC 58.478 45.455 0.00 0.00 41.28 4.02
2938 5181 3.056179 TCAAATAGTGCGTCTCATGGACA 60.056 43.478 12.80 0.00 44.70 4.02
2939 5182 2.879002 ATAGTGCGTCTCATGGACAG 57.121 50.000 12.80 7.86 44.70 3.51
2940 5183 0.173481 TAGTGCGTCTCATGGACAGC 59.827 55.000 12.80 14.80 44.70 4.40
2941 5184 2.125952 TGCGTCTCATGGACAGCG 60.126 61.111 12.80 4.52 44.70 5.18
2942 5185 2.181777 GCGTCTCATGGACAGCGA 59.818 61.111 12.80 0.00 44.70 4.93
2943 5186 1.875813 GCGTCTCATGGACAGCGAG 60.876 63.158 12.80 0.00 44.70 5.03
2944 5187 1.226802 CGTCTCATGGACAGCGAGG 60.227 63.158 12.80 0.00 44.70 4.63
2945 5188 1.657751 CGTCTCATGGACAGCGAGGA 61.658 60.000 12.80 0.00 44.70 3.71
2946 5189 0.532573 GTCTCATGGACAGCGAGGAA 59.467 55.000 8.84 0.00 43.94 3.36
2947 5190 0.532573 TCTCATGGACAGCGAGGAAC 59.467 55.000 0.00 0.00 0.00 3.62
2948 5191 4.042926 GTCTCATGGACAGCGAGGAACT 62.043 54.545 8.84 0.00 43.39 3.01
2949 5192 1.751351 CTCATGGACAGCGAGGAACTA 59.249 52.381 0.00 0.00 41.55 2.24
2950 5193 2.166459 CTCATGGACAGCGAGGAACTAA 59.834 50.000 0.00 0.00 41.55 2.24
2951 5194 2.766263 TCATGGACAGCGAGGAACTAAT 59.234 45.455 0.00 0.00 41.55 1.73
2952 5195 3.197766 TCATGGACAGCGAGGAACTAATT 59.802 43.478 0.00 0.00 41.55 1.40
2953 5196 3.695830 TGGACAGCGAGGAACTAATTT 57.304 42.857 0.00 0.00 41.55 1.82
2954 5197 3.334691 TGGACAGCGAGGAACTAATTTG 58.665 45.455 0.00 0.00 41.55 2.32
2955 5198 2.678336 GGACAGCGAGGAACTAATTTGG 59.322 50.000 0.00 0.00 41.55 3.28
2956 5199 3.335579 GACAGCGAGGAACTAATTTGGT 58.664 45.455 0.00 0.00 41.55 3.67
2957 5200 3.335579 ACAGCGAGGAACTAATTTGGTC 58.664 45.455 0.00 0.00 41.55 4.02
2958 5201 3.008049 ACAGCGAGGAACTAATTTGGTCT 59.992 43.478 4.93 0.00 41.55 3.85
2959 5202 3.372206 CAGCGAGGAACTAATTTGGTCTG 59.628 47.826 4.93 0.00 41.55 3.51
2960 5203 3.008049 AGCGAGGAACTAATTTGGTCTGT 59.992 43.478 4.93 0.00 41.55 3.41
2961 5204 4.222145 AGCGAGGAACTAATTTGGTCTGTA 59.778 41.667 4.93 0.00 41.55 2.74
2962 5205 5.104900 AGCGAGGAACTAATTTGGTCTGTAT 60.105 40.000 4.93 0.00 41.55 2.29
2963 5206 5.006746 GCGAGGAACTAATTTGGTCTGTATG 59.993 44.000 4.93 0.00 41.55 2.39
2964 5207 6.338146 CGAGGAACTAATTTGGTCTGTATGA 58.662 40.000 4.93 0.00 41.55 2.15
2965 5208 6.816640 CGAGGAACTAATTTGGTCTGTATGAA 59.183 38.462 4.93 0.00 41.55 2.57
2966 5209 7.333423 CGAGGAACTAATTTGGTCTGTATGAAA 59.667 37.037 4.93 0.00 41.55 2.69
2967 5210 8.567285 AGGAACTAATTTGGTCTGTATGAAAG 57.433 34.615 4.93 0.00 36.02 2.62
2968 5211 8.383175 AGGAACTAATTTGGTCTGTATGAAAGA 58.617 33.333 4.93 0.00 36.02 2.52
2969 5212 8.669243 GGAACTAATTTGGTCTGTATGAAAGAG 58.331 37.037 4.93 0.00 0.00 2.85
2970 5213 9.436957 GAACTAATTTGGTCTGTATGAAAGAGA 57.563 33.333 0.00 0.00 0.00 3.10
2971 5214 9.793259 AACTAATTTGGTCTGTATGAAAGAGAA 57.207 29.630 0.00 0.00 0.00 2.87
2972 5215 9.965902 ACTAATTTGGTCTGTATGAAAGAGAAT 57.034 29.630 0.00 0.00 0.00 2.40
2974 5217 8.868522 AATTTGGTCTGTATGAAAGAGAATCA 57.131 30.769 0.00 0.00 37.82 2.57
2975 5218 7.672983 TTTGGTCTGTATGAAAGAGAATCAC 57.327 36.000 0.00 0.00 37.82 3.06
2976 5219 6.611613 TGGTCTGTATGAAAGAGAATCACT 57.388 37.500 0.00 0.00 37.82 3.41
2977 5220 7.009179 TGGTCTGTATGAAAGAGAATCACTT 57.991 36.000 0.00 0.00 37.82 3.16
2978 5221 7.453393 TGGTCTGTATGAAAGAGAATCACTTT 58.547 34.615 5.39 5.39 39.76 2.66
2979 5222 7.388776 TGGTCTGTATGAAAGAGAATCACTTTG 59.611 37.037 10.26 0.00 37.64 2.77
2980 5223 7.148340 GGTCTGTATGAAAGAGAATCACTTTGG 60.148 40.741 10.26 0.00 37.64 3.28
2981 5224 7.604164 GTCTGTATGAAAGAGAATCACTTTGGA 59.396 37.037 10.26 0.00 37.64 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.510340 ACGAAGTGTTAGGTGTTTCATGTC 59.490 41.667 0.00 0.00 42.51 3.06
2 3 5.418310 AACGAAGTGTTAGGTGTTTCATG 57.582 39.130 0.00 0.00 45.00 3.07
3 4 5.220970 CCAAACGAAGTGTTAGGTGTTTCAT 60.221 40.000 0.00 0.00 45.00 2.57
4 5 4.095185 CCAAACGAAGTGTTAGGTGTTTCA 59.905 41.667 0.00 0.00 45.00 2.69
5 6 4.333372 TCCAAACGAAGTGTTAGGTGTTTC 59.667 41.667 0.00 0.00 45.00 2.78
7 8 3.876341 TCCAAACGAAGTGTTAGGTGTT 58.124 40.909 0.00 0.00 45.00 3.32
9 10 3.813166 ACATCCAAACGAAGTGTTAGGTG 59.187 43.478 0.00 0.00 45.00 4.00
10 11 4.081322 ACATCCAAACGAAGTGTTAGGT 57.919 40.909 0.00 0.00 45.00 3.08
11 12 4.513692 TCAACATCCAAACGAAGTGTTAGG 59.486 41.667 0.00 0.00 45.00 2.69
12 13 5.666969 TCAACATCCAAACGAAGTGTTAG 57.333 39.130 0.00 0.00 45.00 2.34
70 71 0.391130 CTGAACAGCGGAATTCGGGA 60.391 55.000 14.14 0.00 39.69 5.14
107 108 1.476007 TTTTGGGCCAATTCGGTGGG 61.476 55.000 21.65 0.00 39.26 4.61
166 167 1.026718 AGCTCGCCCCTTTCGAATTG 61.027 55.000 0.00 0.00 35.38 2.32
173 174 2.644676 GAAAATCTAGCTCGCCCCTTT 58.355 47.619 0.00 0.00 0.00 3.11
253 257 1.091537 CCTCTCTCGCTCGAGTCTTT 58.908 55.000 15.13 0.00 42.49 2.52
266 270 1.181786 CTCTGTTTCGCCTCCTCTCT 58.818 55.000 0.00 0.00 0.00 3.10
439 451 2.987547 GGGGAGGTGACGACACGA 60.988 66.667 11.73 0.00 46.77 4.35
517 530 3.017581 GGCCATGGGGTGAGAGGT 61.018 66.667 15.13 0.00 36.17 3.85
570 609 1.377856 GCTTGAGGAGAAGTGGCCC 60.378 63.158 0.00 0.00 0.00 5.80
571 610 1.377856 GGCTTGAGGAGAAGTGGCC 60.378 63.158 0.00 0.00 0.00 5.36
572 611 1.377856 GGGCTTGAGGAGAAGTGGC 60.378 63.158 0.00 0.00 0.00 5.01
573 612 1.301293 GGGGCTTGAGGAGAAGTGG 59.699 63.158 0.00 0.00 0.00 4.00
574 613 0.622665 ATGGGGCTTGAGGAGAAGTG 59.377 55.000 0.00 0.00 0.00 3.16
575 614 0.622665 CATGGGGCTTGAGGAGAAGT 59.377 55.000 0.00 0.00 0.00 3.01
576 615 0.106819 CCATGGGGCTTGAGGAGAAG 60.107 60.000 2.85 0.00 0.00 2.85
577 616 2.001803 CCATGGGGCTTGAGGAGAA 58.998 57.895 2.85 0.00 0.00 2.87
578 617 3.745546 CCATGGGGCTTGAGGAGA 58.254 61.111 2.85 0.00 0.00 3.71
588 627 4.586235 GGGACGATGGCCATGGGG 62.586 72.222 28.73 17.51 37.18 4.96
589 628 4.586235 GGGGACGATGGCCATGGG 62.586 72.222 28.73 19.86 0.00 4.00
615 654 4.445305 GGGTTTCTGTGTTAGGGTTAGTGT 60.445 45.833 0.00 0.00 0.00 3.55
617 656 3.978672 AGGGTTTCTGTGTTAGGGTTAGT 59.021 43.478 0.00 0.00 0.00 2.24
1056 1101 6.937436 ACCGATTCAAAGTAAAGTTCTGTT 57.063 33.333 0.00 0.00 0.00 3.16
1152 1197 9.623000 AACAAGTACTTCCTAAGTGTGTATTTT 57.377 29.630 4.77 0.00 42.84 1.82
1284 1329 0.171679 TCACATACACACTACGGCGG 59.828 55.000 13.24 0.00 0.00 6.13
1288 1333 3.057806 TCCACAGTCACATACACACTACG 60.058 47.826 0.00 0.00 0.00 3.51
1332 1377 0.896940 GACCGTGTCCCACCACTAGA 60.897 60.000 0.00 0.00 33.07 2.43
1518 3115 1.839994 AGCTGCCTTCACATTAGCCTA 59.160 47.619 0.00 0.00 35.05 3.93
1599 3196 0.958382 GCACCTTCACCGGTTGCATA 60.958 55.000 20.61 0.00 34.29 3.14
1633 3230 5.335191 GGTTCTATTGGTTGCTCTTCAGTTG 60.335 44.000 0.00 0.00 0.00 3.16
1724 3321 6.294899 CCTTTCATGTCTCCAACATTCACAAT 60.295 38.462 0.00 0.00 46.73 2.71
1730 3327 5.388654 AGAACCTTTCATGTCTCCAACATT 58.611 37.500 0.00 0.00 46.73 2.71
1857 3455 3.181466 ACCATATGCTCGCAACATGTCTA 60.181 43.478 0.00 0.00 0.00 2.59
1885 3483 7.011109 GCTTGAAATAAGCGTTCACTAAGGATA 59.989 37.037 0.00 0.00 34.78 2.59
2051 3659 6.986817 GGTCTCATACATGTAGCAATAACACT 59.013 38.462 11.91 0.00 0.00 3.55
2052 3660 6.986817 AGGTCTCATACATGTAGCAATAACAC 59.013 38.462 11.91 0.42 0.00 3.32
2107 3804 5.335127 CAACACTTATAAATCAGCAGCACC 58.665 41.667 0.00 0.00 0.00 5.01
2144 3983 2.030893 GCACAAATACAACAGCAGCAGA 60.031 45.455 0.00 0.00 0.00 4.26
2177 4103 1.683943 ACACAACAGCAGCATCAACT 58.316 45.000 0.00 0.00 0.00 3.16
2182 4108 2.575532 ACACTTACACAACAGCAGCAT 58.424 42.857 0.00 0.00 0.00 3.79
2207 4133 2.482721 ACAACGGCACTAATACAACAGC 59.517 45.455 0.00 0.00 0.00 4.40
2208 4134 4.687018 TGTACAACGGCACTAATACAACAG 59.313 41.667 0.00 0.00 0.00 3.16
2209 4135 4.629092 TGTACAACGGCACTAATACAACA 58.371 39.130 0.00 0.00 0.00 3.33
2210 4136 5.178067 AGTTGTACAACGGCACTAATACAAC 59.822 40.000 28.21 17.82 46.53 3.32
2211 4137 5.177881 CAGTTGTACAACGGCACTAATACAA 59.822 40.000 28.21 0.00 45.50 2.41
2212 4138 4.687018 CAGTTGTACAACGGCACTAATACA 59.313 41.667 28.21 0.00 45.50 2.29
2213 4139 4.687483 ACAGTTGTACAACGGCACTAATAC 59.313 41.667 30.70 8.08 45.50 1.89
2214 4140 4.885413 ACAGTTGTACAACGGCACTAATA 58.115 39.130 30.70 0.00 45.50 0.98
2215 4141 3.735591 ACAGTTGTACAACGGCACTAAT 58.264 40.909 30.70 13.45 45.50 1.73
2216 4142 3.182341 ACAGTTGTACAACGGCACTAA 57.818 42.857 30.70 0.00 45.50 2.24
2217 4143 2.867368 CAACAGTTGTACAACGGCACTA 59.133 45.455 30.70 0.00 45.50 2.74
2218 4144 1.668751 CAACAGTTGTACAACGGCACT 59.331 47.619 30.70 17.23 45.50 4.40
2219 4145 1.858399 GCAACAGTTGTACAACGGCAC 60.858 52.381 30.70 19.68 45.50 5.01
2220 4146 0.378962 GCAACAGTTGTACAACGGCA 59.621 50.000 30.70 0.00 45.50 5.69
2221 4147 0.661020 AGCAACAGTTGTACAACGGC 59.339 50.000 30.70 28.07 45.50 5.68
2222 4148 1.596954 GCAGCAACAGTTGTACAACGG 60.597 52.381 29.63 29.63 45.50 4.44
2223 4149 1.330521 AGCAGCAACAGTTGTACAACG 59.669 47.619 28.21 24.27 45.50 4.10
2224 4150 2.097466 ACAGCAGCAACAGTTGTACAAC 59.903 45.455 27.72 27.72 41.45 3.32
2225 4151 2.364632 ACAGCAGCAACAGTTGTACAA 58.635 42.857 14.88 3.59 0.00 2.41
2226 4152 2.036958 ACAGCAGCAACAGTTGTACA 57.963 45.000 14.88 0.00 0.00 2.90
2227 4153 2.614057 AGAACAGCAGCAACAGTTGTAC 59.386 45.455 14.88 4.90 30.00 2.90
2228 4154 2.917933 AGAACAGCAGCAACAGTTGTA 58.082 42.857 14.88 0.00 30.00 2.41
2229 4155 1.755179 AGAACAGCAGCAACAGTTGT 58.245 45.000 14.88 0.00 31.50 3.32
2230 4156 2.857592 AAGAACAGCAGCAACAGTTG 57.142 45.000 9.12 9.12 0.00 3.16
2231 4157 4.399303 ACTTAAAGAACAGCAGCAACAGTT 59.601 37.500 0.00 0.00 0.00 3.16
2232 4158 3.947834 ACTTAAAGAACAGCAGCAACAGT 59.052 39.130 0.00 0.00 0.00 3.55
2233 4159 4.285292 CACTTAAAGAACAGCAGCAACAG 58.715 43.478 0.00 0.00 0.00 3.16
2234 4160 3.489059 GCACTTAAAGAACAGCAGCAACA 60.489 43.478 0.00 0.00 0.00 3.33
2235 4161 3.045688 GCACTTAAAGAACAGCAGCAAC 58.954 45.455 0.00 0.00 0.00 4.17
2236 4162 2.951642 AGCACTTAAAGAACAGCAGCAA 59.048 40.909 0.00 0.00 0.00 3.91
2237 4163 2.291465 CAGCACTTAAAGAACAGCAGCA 59.709 45.455 0.00 0.00 0.00 4.41
2238 4164 2.919807 GCAGCACTTAAAGAACAGCAGC 60.920 50.000 0.00 0.00 0.00 5.25
2239 4165 2.551459 AGCAGCACTTAAAGAACAGCAG 59.449 45.455 0.00 0.00 0.00 4.24
2240 4166 2.291465 CAGCAGCACTTAAAGAACAGCA 59.709 45.455 0.00 0.00 0.00 4.41
2241 4167 2.919807 GCAGCAGCACTTAAAGAACAGC 60.920 50.000 0.00 0.00 41.58 4.40
2242 4168 2.551459 AGCAGCAGCACTTAAAGAACAG 59.449 45.455 3.17 0.00 45.49 3.16
2243 4169 2.291465 CAGCAGCAGCACTTAAAGAACA 59.709 45.455 3.17 0.00 45.49 3.18
2244 4170 2.919807 GCAGCAGCAGCACTTAAAGAAC 60.920 50.000 4.63 0.00 45.49 3.01
2245 4171 1.267806 GCAGCAGCAGCACTTAAAGAA 59.732 47.619 4.63 0.00 45.49 2.52
2246 4172 0.877071 GCAGCAGCAGCACTTAAAGA 59.123 50.000 4.63 0.00 45.49 2.52
2247 4173 0.879765 AGCAGCAGCAGCACTTAAAG 59.120 50.000 12.92 0.00 45.49 1.85
2248 4174 0.594602 CAGCAGCAGCAGCACTTAAA 59.405 50.000 12.92 0.00 45.49 1.52
2249 4175 0.250424 TCAGCAGCAGCAGCACTTAA 60.250 50.000 12.92 0.00 45.49 1.85
2250 4176 0.035725 ATCAGCAGCAGCAGCACTTA 60.036 50.000 12.92 0.00 45.49 2.24
2251 4177 0.035725 TATCAGCAGCAGCAGCACTT 60.036 50.000 12.92 0.00 45.49 3.16
2252 4178 0.180642 ATATCAGCAGCAGCAGCACT 59.819 50.000 12.92 0.00 45.49 4.40
2253 4179 0.308068 CATATCAGCAGCAGCAGCAC 59.692 55.000 12.92 0.00 45.49 4.40
2254 4180 0.107361 ACATATCAGCAGCAGCAGCA 60.107 50.000 12.92 0.00 45.49 4.41
2255 4181 0.308068 CACATATCAGCAGCAGCAGC 59.692 55.000 3.17 0.46 45.49 5.25
2256 4182 0.308068 GCACATATCAGCAGCAGCAG 59.692 55.000 3.17 0.00 45.49 4.24
2257 4183 0.107361 AGCACATATCAGCAGCAGCA 60.107 50.000 3.17 0.00 45.49 4.41
2258 4184 0.308068 CAGCACATATCAGCAGCAGC 59.692 55.000 0.00 0.00 42.56 5.25
2259 4185 0.308068 GCAGCACATATCAGCAGCAG 59.692 55.000 8.00 0.00 42.04 4.24
2260 4186 0.107361 AGCAGCACATATCAGCAGCA 60.107 50.000 13.45 0.00 44.45 4.41
2261 4187 0.308068 CAGCAGCACATATCAGCAGC 59.692 55.000 0.00 5.46 42.67 5.25
2262 4188 0.308068 GCAGCAGCACATATCAGCAG 59.692 55.000 0.00 0.00 41.58 4.24
2263 4189 0.107361 AGCAGCAGCACATATCAGCA 60.107 50.000 3.17 0.00 45.49 4.41
2264 4190 0.308068 CAGCAGCAGCACATATCAGC 59.692 55.000 3.17 0.00 45.49 4.26
2265 4191 0.308068 GCAGCAGCAGCACATATCAG 59.692 55.000 4.63 0.00 45.49 2.90
2266 4192 0.107361 AGCAGCAGCAGCACATATCA 60.107 50.000 12.92 0.00 45.49 2.15
2267 4193 0.308068 CAGCAGCAGCAGCACATATC 59.692 55.000 12.92 0.00 45.49 1.63
2287 4213 5.237996 CAGCACATACATAGCAGCACTTATT 59.762 40.000 0.00 0.00 0.00 1.40
2306 4236 0.662619 TACAACAGCAACAGCAGCAC 59.337 50.000 0.00 0.00 0.00 4.40
2309 4239 4.452114 TGACTTATACAACAGCAACAGCAG 59.548 41.667 0.00 0.00 0.00 4.24
2310 4240 4.384940 TGACTTATACAACAGCAACAGCA 58.615 39.130 0.00 0.00 0.00 4.41
2311 4241 5.106555 ACATGACTTATACAACAGCAACAGC 60.107 40.000 0.00 0.00 0.00 4.40
2312 4242 6.486253 ACATGACTTATACAACAGCAACAG 57.514 37.500 0.00 0.00 0.00 3.16
2313 4243 6.484977 TCAACATGACTTATACAACAGCAACA 59.515 34.615 0.00 0.00 0.00 3.33
2314 4244 6.898041 TCAACATGACTTATACAACAGCAAC 58.102 36.000 0.00 0.00 0.00 4.17
2351 4551 2.625790 GTGGATGCACTTACCCAAAACA 59.374 45.455 10.51 0.00 0.00 2.83
2472 4691 8.896744 GTCATTCTCTACATTGGAATTGATCAA 58.103 33.333 11.26 11.26 0.00 2.57
2515 4758 5.998454 ATTCTAATGACAGGCTCAATTCG 57.002 39.130 0.00 0.00 30.60 3.34
2671 4914 7.461182 TTGGTTTCTATCATACCAAACCTTG 57.539 36.000 12.40 0.00 46.03 3.61
2678 4921 5.652014 CCTGCTTTTGGTTTCTATCATACCA 59.348 40.000 0.00 0.00 40.06 3.25
2679 4922 5.450550 GCCTGCTTTTGGTTTCTATCATACC 60.451 44.000 0.00 0.00 0.00 2.73
2680 4923 5.450550 GGCCTGCTTTTGGTTTCTATCATAC 60.451 44.000 0.00 0.00 0.00 2.39
2682 4925 3.448660 GGCCTGCTTTTGGTTTCTATCAT 59.551 43.478 0.00 0.00 0.00 2.45
2683 4926 2.825532 GGCCTGCTTTTGGTTTCTATCA 59.174 45.455 0.00 0.00 0.00 2.15
2684 4927 2.825532 TGGCCTGCTTTTGGTTTCTATC 59.174 45.455 3.32 0.00 0.00 2.08
2687 4930 1.720781 ATGGCCTGCTTTTGGTTTCT 58.279 45.000 3.32 0.00 0.00 2.52
2688 4931 2.675032 GCTATGGCCTGCTTTTGGTTTC 60.675 50.000 3.32 0.00 0.00 2.78
2689 4932 1.276138 GCTATGGCCTGCTTTTGGTTT 59.724 47.619 3.32 0.00 0.00 3.27
2690 4933 0.897621 GCTATGGCCTGCTTTTGGTT 59.102 50.000 3.32 0.00 0.00 3.67
2691 4934 0.251742 TGCTATGGCCTGCTTTTGGT 60.252 50.000 3.32 0.00 37.74 3.67
2692 4935 0.458669 CTGCTATGGCCTGCTTTTGG 59.541 55.000 3.32 0.00 37.74 3.28
2693 4936 1.180029 ACTGCTATGGCCTGCTTTTG 58.820 50.000 3.32 1.66 37.74 2.44
2694 4937 2.806945 TACTGCTATGGCCTGCTTTT 57.193 45.000 3.32 0.00 37.74 2.27
2695 4938 3.303351 AATACTGCTATGGCCTGCTTT 57.697 42.857 3.32 0.20 37.74 3.51
2696 4939 3.392616 ACTAATACTGCTATGGCCTGCTT 59.607 43.478 3.32 0.00 37.74 3.91
2697 4940 2.975489 ACTAATACTGCTATGGCCTGCT 59.025 45.455 3.32 0.00 37.74 4.24
2698 4941 3.007398 AGACTAATACTGCTATGGCCTGC 59.993 47.826 3.32 6.66 37.74 4.85
2699 4942 4.281941 TGAGACTAATACTGCTATGGCCTG 59.718 45.833 3.32 0.00 37.74 4.85
2700 4943 4.483950 TGAGACTAATACTGCTATGGCCT 58.516 43.478 3.32 0.00 37.74 5.19
2701 4944 4.524714 TCTGAGACTAATACTGCTATGGCC 59.475 45.833 0.00 0.00 37.74 5.36
2702 4945 5.713792 TCTGAGACTAATACTGCTATGGC 57.286 43.478 0.00 0.00 39.26 4.40
2703 4946 9.019656 AGTTATCTGAGACTAATACTGCTATGG 57.980 37.037 0.00 0.00 0.00 2.74
2727 4970 9.893305 GCAGTATGAAAAACAGTGTAAATAAGT 57.107 29.630 0.00 0.00 39.69 2.24
2728 4971 9.891828 TGCAGTATGAAAAACAGTGTAAATAAG 57.108 29.630 0.00 0.00 39.69 1.73
2735 4978 9.231297 ACTATTATGCAGTATGAAAAACAGTGT 57.769 29.630 0.00 0.00 39.69 3.55
2749 4992 9.109393 CAACCATGTAGTTTACTATTATGCAGT 57.891 33.333 0.00 0.00 30.87 4.40
2750 4993 9.325198 TCAACCATGTAGTTTACTATTATGCAG 57.675 33.333 0.00 0.00 30.87 4.41
2751 4994 9.104965 GTCAACCATGTAGTTTACTATTATGCA 57.895 33.333 0.00 0.00 30.87 3.96
2752 4995 9.326413 AGTCAACCATGTAGTTTACTATTATGC 57.674 33.333 1.28 0.00 33.51 3.14
2757 5000 9.871238 CTAACAGTCAACCATGTAGTTTACTAT 57.129 33.333 2.58 0.00 33.51 2.12
2758 5001 9.081204 TCTAACAGTCAACCATGTAGTTTACTA 57.919 33.333 2.58 0.00 33.51 1.82
2759 5002 7.959175 TCTAACAGTCAACCATGTAGTTTACT 58.041 34.615 0.00 0.00 35.16 2.24
2760 5003 8.773404 ATCTAACAGTCAACCATGTAGTTTAC 57.227 34.615 0.00 0.00 0.00 2.01
2778 5021 9.524106 CGTGTGGACAAAGTTATATATCTAACA 57.476 33.333 12.11 0.00 34.66 2.41
2779 5022 8.485591 GCGTGTGGACAAAGTTATATATCTAAC 58.514 37.037 3.41 3.41 32.80 2.34
2780 5023 7.654520 GGCGTGTGGACAAAGTTATATATCTAA 59.345 37.037 0.00 0.00 0.00 2.10
2781 5024 7.014905 AGGCGTGTGGACAAAGTTATATATCTA 59.985 37.037 0.00 0.00 0.00 1.98
2782 5025 5.989777 GGCGTGTGGACAAAGTTATATATCT 59.010 40.000 0.00 0.00 0.00 1.98
2783 5026 5.989777 AGGCGTGTGGACAAAGTTATATATC 59.010 40.000 0.00 0.00 0.00 1.63
2784 5027 5.925509 AGGCGTGTGGACAAAGTTATATAT 58.074 37.500 0.00 0.00 0.00 0.86
2785 5028 5.347620 AGGCGTGTGGACAAAGTTATATA 57.652 39.130 0.00 0.00 0.00 0.86
2786 5029 4.216411 AGGCGTGTGGACAAAGTTATAT 57.784 40.909 0.00 0.00 0.00 0.86
2787 5030 3.688694 AGGCGTGTGGACAAAGTTATA 57.311 42.857 0.00 0.00 0.00 0.98
2788 5031 2.561478 AGGCGTGTGGACAAAGTTAT 57.439 45.000 0.00 0.00 0.00 1.89
2789 5032 2.215196 GAAGGCGTGTGGACAAAGTTA 58.785 47.619 0.00 0.00 0.00 2.24
2790 5033 1.021968 GAAGGCGTGTGGACAAAGTT 58.978 50.000 0.00 0.00 0.00 2.66
2791 5034 0.107410 TGAAGGCGTGTGGACAAAGT 60.107 50.000 0.00 0.00 0.00 2.66
2792 5035 1.197721 GATGAAGGCGTGTGGACAAAG 59.802 52.381 0.00 0.00 0.00 2.77
2793 5036 1.234821 GATGAAGGCGTGTGGACAAA 58.765 50.000 0.00 0.00 0.00 2.83
2794 5037 0.605319 GGATGAAGGCGTGTGGACAA 60.605 55.000 0.00 0.00 0.00 3.18
2795 5038 1.003839 GGATGAAGGCGTGTGGACA 60.004 57.895 0.00 0.00 0.00 4.02
2796 5039 2.100631 CGGATGAAGGCGTGTGGAC 61.101 63.158 0.00 0.00 0.00 4.02
2797 5040 1.613317 ATCGGATGAAGGCGTGTGGA 61.613 55.000 0.00 0.00 0.00 4.02
2798 5041 0.744414 AATCGGATGAAGGCGTGTGG 60.744 55.000 0.00 0.00 0.00 4.17
2799 5042 1.086696 AAATCGGATGAAGGCGTGTG 58.913 50.000 0.00 0.00 0.00 3.82
2800 5043 1.086696 CAAATCGGATGAAGGCGTGT 58.913 50.000 0.00 0.00 0.00 4.49
2801 5044 0.248215 GCAAATCGGATGAAGGCGTG 60.248 55.000 0.00 0.00 0.00 5.34
2802 5045 0.392998 AGCAAATCGGATGAAGGCGT 60.393 50.000 0.00 0.00 0.00 5.68
2803 5046 0.734889 AAGCAAATCGGATGAAGGCG 59.265 50.000 0.00 0.00 0.00 5.52
2804 5047 1.745087 TCAAGCAAATCGGATGAAGGC 59.255 47.619 0.00 0.00 0.00 4.35
2805 5048 5.954296 ATATCAAGCAAATCGGATGAAGG 57.046 39.130 0.00 0.00 0.00 3.46
2806 5049 9.979270 GTTATATATCAAGCAAATCGGATGAAG 57.021 33.333 0.00 0.00 0.00 3.02
2807 5050 9.725019 AGTTATATATCAAGCAAATCGGATGAA 57.275 29.630 0.00 0.00 0.00 2.57
2808 5051 9.725019 AAGTTATATATCAAGCAAATCGGATGA 57.275 29.630 0.00 0.00 0.00 2.92
2811 5054 9.337396 ACAAAGTTATATATCAAGCAAATCGGA 57.663 29.630 0.00 0.00 0.00 4.55
2812 5055 9.599322 GACAAAGTTATATATCAAGCAAATCGG 57.401 33.333 0.00 0.00 0.00 4.18
2813 5056 9.599322 GGACAAAGTTATATATCAAGCAAATCG 57.401 33.333 0.00 0.00 0.00 3.34
2816 5059 9.237187 TGTGGACAAAGTTATATATCAAGCAAA 57.763 29.630 0.00 0.00 0.00 3.68
2817 5060 8.673711 GTGTGGACAAAGTTATATATCAAGCAA 58.326 33.333 0.00 0.00 0.00 3.91
2818 5061 8.046708 AGTGTGGACAAAGTTATATATCAAGCA 58.953 33.333 0.00 0.00 0.00 3.91
2819 5062 8.438676 AGTGTGGACAAAGTTATATATCAAGC 57.561 34.615 0.00 0.00 0.00 4.01
2820 5063 9.046296 GGAGTGTGGACAAAGTTATATATCAAG 57.954 37.037 0.00 0.00 0.00 3.02
2821 5064 8.768397 AGGAGTGTGGACAAAGTTATATATCAA 58.232 33.333 0.00 0.00 0.00 2.57
2822 5065 8.319057 AGGAGTGTGGACAAAGTTATATATCA 57.681 34.615 0.00 0.00 0.00 2.15
2823 5066 9.262358 GAAGGAGTGTGGACAAAGTTATATATC 57.738 37.037 0.00 0.00 0.00 1.63
2824 5067 8.768397 TGAAGGAGTGTGGACAAAGTTATATAT 58.232 33.333 0.00 0.00 0.00 0.86
2825 5068 8.141298 TGAAGGAGTGTGGACAAAGTTATATA 57.859 34.615 0.00 0.00 0.00 0.86
2826 5069 7.016153 TGAAGGAGTGTGGACAAAGTTATAT 57.984 36.000 0.00 0.00 0.00 0.86
2827 5070 6.428083 TGAAGGAGTGTGGACAAAGTTATA 57.572 37.500 0.00 0.00 0.00 0.98
2828 5071 5.304686 TGAAGGAGTGTGGACAAAGTTAT 57.695 39.130 0.00 0.00 0.00 1.89
2829 5072 4.764050 TGAAGGAGTGTGGACAAAGTTA 57.236 40.909 0.00 0.00 0.00 2.24
2830 5073 3.644966 TGAAGGAGTGTGGACAAAGTT 57.355 42.857 0.00 0.00 0.00 2.66
2831 5074 3.864789 ATGAAGGAGTGTGGACAAAGT 57.135 42.857 0.00 0.00 0.00 2.66
2832 5075 4.580167 TCAAATGAAGGAGTGTGGACAAAG 59.420 41.667 0.00 0.00 0.00 2.77
2833 5076 4.531854 TCAAATGAAGGAGTGTGGACAAA 58.468 39.130 0.00 0.00 0.00 2.83
2834 5077 4.163441 TCAAATGAAGGAGTGTGGACAA 57.837 40.909 0.00 0.00 0.00 3.18
2835 5078 3.855255 TCAAATGAAGGAGTGTGGACA 57.145 42.857 0.00 0.00 0.00 4.02
2836 5079 5.464168 CAAATCAAATGAAGGAGTGTGGAC 58.536 41.667 0.00 0.00 0.00 4.02
2837 5080 4.022068 GCAAATCAAATGAAGGAGTGTGGA 60.022 41.667 0.00 0.00 0.00 4.02
2838 5081 4.021719 AGCAAATCAAATGAAGGAGTGTGG 60.022 41.667 0.00 0.00 0.00 4.17
2839 5082 5.130292 AGCAAATCAAATGAAGGAGTGTG 57.870 39.130 0.00 0.00 0.00 3.82
2840 5083 5.535333 CAAGCAAATCAAATGAAGGAGTGT 58.465 37.500 0.00 0.00 0.00 3.55
2841 5084 4.387862 GCAAGCAAATCAAATGAAGGAGTG 59.612 41.667 0.00 0.00 0.00 3.51
2842 5085 4.039488 TGCAAGCAAATCAAATGAAGGAGT 59.961 37.500 0.00 0.00 0.00 3.85
2843 5086 4.562082 TGCAAGCAAATCAAATGAAGGAG 58.438 39.130 0.00 0.00 0.00 3.69
2844 5087 4.603989 TGCAAGCAAATCAAATGAAGGA 57.396 36.364 0.00 0.00 0.00 3.36
2845 5088 4.693566 ACATGCAAGCAAATCAAATGAAGG 59.306 37.500 0.00 0.00 0.00 3.46
2846 5089 5.856126 ACATGCAAGCAAATCAAATGAAG 57.144 34.783 0.00 0.00 0.00 3.02
2847 5090 5.561145 GCAACATGCAAGCAAATCAAATGAA 60.561 36.000 0.00 0.00 44.26 2.57
2848 5091 4.083749 GCAACATGCAAGCAAATCAAATGA 60.084 37.500 0.00 0.00 44.26 2.57
2849 5092 4.155449 GCAACATGCAAGCAAATCAAATG 58.845 39.130 0.00 0.00 44.26 2.32
2850 5093 4.413495 GCAACATGCAAGCAAATCAAAT 57.587 36.364 0.00 0.00 44.26 2.32
2851 5094 3.881780 GCAACATGCAAGCAAATCAAA 57.118 38.095 0.00 0.00 44.26 2.69
2863 5106 0.458889 ATCCATGCGTTGCAACATGC 60.459 50.000 28.01 23.17 43.62 4.06
2864 5107 1.133598 AGATCCATGCGTTGCAACATG 59.866 47.619 28.01 22.74 43.62 3.21
2865 5108 1.133598 CAGATCCATGCGTTGCAACAT 59.866 47.619 28.01 13.13 43.62 2.71
2866 5109 0.522626 CAGATCCATGCGTTGCAACA 59.477 50.000 28.01 11.26 43.62 3.33
2867 5110 0.799534 GCAGATCCATGCGTTGCAAC 60.800 55.000 19.89 19.89 43.62 4.17
2868 5111 1.507630 GCAGATCCATGCGTTGCAA 59.492 52.632 0.00 0.00 43.62 4.08
2869 5112 3.189921 GCAGATCCATGCGTTGCA 58.810 55.556 0.00 0.00 44.86 4.08
2875 5118 2.923121 TGTCCTTTAGCAGATCCATGC 58.077 47.619 0.00 0.00 46.88 4.06
2876 5119 4.458397 ACATGTCCTTTAGCAGATCCATG 58.542 43.478 0.00 0.00 0.00 3.66
2877 5120 4.164796 TGACATGTCCTTTAGCAGATCCAT 59.835 41.667 22.85 0.00 0.00 3.41
2878 5121 3.519107 TGACATGTCCTTTAGCAGATCCA 59.481 43.478 22.85 0.00 0.00 3.41
2879 5122 4.142609 TGACATGTCCTTTAGCAGATCC 57.857 45.455 22.85 0.00 0.00 3.36
2880 5123 5.121811 ACATGACATGTCCTTTAGCAGATC 58.878 41.667 22.85 0.00 39.92 2.75
2881 5124 5.108187 ACATGACATGTCCTTTAGCAGAT 57.892 39.130 22.85 3.64 39.92 2.90
2882 5125 4.558226 ACATGACATGTCCTTTAGCAGA 57.442 40.909 22.85 1.16 39.92 4.26
2883 5126 5.295292 CCTAACATGACATGTCCTTTAGCAG 59.705 44.000 22.85 10.75 44.07 4.24
2884 5127 5.185454 CCTAACATGACATGTCCTTTAGCA 58.815 41.667 22.85 3.41 44.07 3.49
2885 5128 4.035675 GCCTAACATGACATGTCCTTTAGC 59.964 45.833 22.85 13.87 44.07 3.09
2886 5129 5.185454 TGCCTAACATGACATGTCCTTTAG 58.815 41.667 22.85 21.60 44.07 1.85
2887 5130 5.172687 TGCCTAACATGACATGTCCTTTA 57.827 39.130 22.85 14.89 44.07 1.85
2888 5131 4.032960 TGCCTAACATGACATGTCCTTT 57.967 40.909 22.85 14.57 44.07 3.11
2889 5132 3.719268 TGCCTAACATGACATGTCCTT 57.281 42.857 22.85 13.29 44.07 3.36
2890 5133 3.719268 TTGCCTAACATGACATGTCCT 57.281 42.857 22.85 10.76 44.07 3.85
2891 5134 3.758554 AGTTTGCCTAACATGACATGTCC 59.241 43.478 22.85 10.60 44.07 4.02
2892 5135 6.683974 ATAGTTTGCCTAACATGACATGTC 57.316 37.500 21.05 19.27 44.07 3.06
2894 5137 7.087409 TGAATAGTTTGCCTAACATGACATG 57.913 36.000 14.02 14.02 39.30 3.21
2895 5138 7.701539 TTGAATAGTTTGCCTAACATGACAT 57.298 32.000 0.00 0.00 39.30 3.06
2896 5139 7.517614 TTTGAATAGTTTGCCTAACATGACA 57.482 32.000 0.00 0.00 39.30 3.58
2897 5140 9.722056 CTATTTGAATAGTTTGCCTAACATGAC 57.278 33.333 0.00 0.00 39.30 3.06
2911 5154 8.372600 GTCCATGAGACGCACTATTTGAATAGT 61.373 40.741 9.94 9.94 42.77 2.12
2912 5155 5.985530 TCCATGAGACGCACTATTTGAATAG 59.014 40.000 8.78 8.78 43.15 1.73
2913 5156 5.753438 GTCCATGAGACGCACTATTTGAATA 59.247 40.000 0.00 0.00 35.30 1.75
2914 5157 4.572389 GTCCATGAGACGCACTATTTGAAT 59.428 41.667 0.00 0.00 35.30 2.57
2915 5158 3.932710 GTCCATGAGACGCACTATTTGAA 59.067 43.478 0.00 0.00 35.30 2.69
2916 5159 3.521560 GTCCATGAGACGCACTATTTGA 58.478 45.455 0.00 0.00 35.30 2.69
2917 5160 3.933155 GTCCATGAGACGCACTATTTG 57.067 47.619 0.00 0.00 35.30 2.32
2927 5170 0.532573 TTCCTCGCTGTCCATGAGAC 59.467 55.000 0.00 0.39 46.51 3.36
2928 5171 0.532573 GTTCCTCGCTGTCCATGAGA 59.467 55.000 0.00 0.00 31.31 3.27
2929 5172 0.534412 AGTTCCTCGCTGTCCATGAG 59.466 55.000 0.00 0.00 0.00 2.90
2930 5173 1.847328 TAGTTCCTCGCTGTCCATGA 58.153 50.000 0.00 0.00 0.00 3.07
2931 5174 2.672961 TTAGTTCCTCGCTGTCCATG 57.327 50.000 0.00 0.00 0.00 3.66
2932 5175 3.914426 AATTAGTTCCTCGCTGTCCAT 57.086 42.857 0.00 0.00 0.00 3.41
2933 5176 3.334691 CAAATTAGTTCCTCGCTGTCCA 58.665 45.455 0.00 0.00 0.00 4.02
2934 5177 2.678336 CCAAATTAGTTCCTCGCTGTCC 59.322 50.000 0.00 0.00 0.00 4.02
2935 5178 3.335579 ACCAAATTAGTTCCTCGCTGTC 58.664 45.455 0.00 0.00 0.00 3.51
2936 5179 3.008049 AGACCAAATTAGTTCCTCGCTGT 59.992 43.478 0.00 0.00 0.00 4.40
2937 5180 3.372206 CAGACCAAATTAGTTCCTCGCTG 59.628 47.826 0.00 0.00 0.00 5.18
2938 5181 3.008049 ACAGACCAAATTAGTTCCTCGCT 59.992 43.478 0.00 0.00 0.00 4.93
2939 5182 3.335579 ACAGACCAAATTAGTTCCTCGC 58.664 45.455 0.00 0.00 0.00 5.03
2940 5183 6.338146 TCATACAGACCAAATTAGTTCCTCG 58.662 40.000 0.00 0.00 0.00 4.63
2941 5184 8.561738 TTTCATACAGACCAAATTAGTTCCTC 57.438 34.615 0.00 0.00 0.00 3.71
2942 5185 8.383175 TCTTTCATACAGACCAAATTAGTTCCT 58.617 33.333 0.00 0.00 0.00 3.36
2943 5186 8.561738 TCTTTCATACAGACCAAATTAGTTCC 57.438 34.615 0.00 0.00 0.00 3.62
2944 5187 9.436957 TCTCTTTCATACAGACCAAATTAGTTC 57.563 33.333 0.00 0.00 0.00 3.01
2945 5188 9.793259 TTCTCTTTCATACAGACCAAATTAGTT 57.207 29.630 0.00 0.00 0.00 2.24
2946 5189 9.965902 ATTCTCTTTCATACAGACCAAATTAGT 57.034 29.630 0.00 0.00 0.00 2.24
2948 5191 9.958180 TGATTCTCTTTCATACAGACCAAATTA 57.042 29.630 0.00 0.00 0.00 1.40
2949 5192 8.734386 GTGATTCTCTTTCATACAGACCAAATT 58.266 33.333 0.00 0.00 0.00 1.82
2950 5193 8.105829 AGTGATTCTCTTTCATACAGACCAAAT 58.894 33.333 0.00 0.00 0.00 2.32
2951 5194 7.453393 AGTGATTCTCTTTCATACAGACCAAA 58.547 34.615 0.00 0.00 0.00 3.28
2952 5195 7.009179 AGTGATTCTCTTTCATACAGACCAA 57.991 36.000 0.00 0.00 0.00 3.67
2953 5196 6.611613 AGTGATTCTCTTTCATACAGACCA 57.388 37.500 0.00 0.00 0.00 4.02
2954 5197 7.148340 CCAAAGTGATTCTCTTTCATACAGACC 60.148 40.741 10.06 0.00 33.58 3.85
2955 5198 7.604164 TCCAAAGTGATTCTCTTTCATACAGAC 59.396 37.037 10.06 0.00 33.58 3.51
2956 5199 7.679783 TCCAAAGTGATTCTCTTTCATACAGA 58.320 34.615 10.06 0.93 33.58 3.41
2957 5200 7.912056 TCCAAAGTGATTCTCTTTCATACAG 57.088 36.000 10.06 0.65 33.58 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.