Multiple sequence alignment - TraesCS2B01G591000
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2B01G591000 | chr2B | 100.000 | 2765 | 0 | 0 | 1 | 2765 | 776709656 | 776706892 | 0.000000e+00 | 5107 |
1 | TraesCS2B01G591000 | chr2D | 90.944 | 2087 | 114 | 28 | 1 | 2063 | 633711889 | 633709854 | 0.000000e+00 | 2737 |
2 | TraesCS2B01G591000 | chr2D | 88.177 | 406 | 39 | 6 | 2367 | 2765 | 633709006 | 633708603 | 2.490000e-130 | 475 |
3 | TraesCS2B01G591000 | chr2D | 91.304 | 184 | 16 | 0 | 2181 | 2364 | 468000204 | 468000387 | 4.570000e-63 | 252 |
4 | TraesCS2B01G591000 | chr2A | 90.619 | 1535 | 74 | 34 | 523 | 2013 | 779889731 | 779891239 | 0.000000e+00 | 1973 |
5 | TraesCS2B01G591000 | chr2A | 89.806 | 412 | 33 | 5 | 2362 | 2765 | 779891691 | 779892101 | 1.130000e-143 | 520 |
6 | TraesCS2B01G591000 | chr2A | 86.393 | 463 | 31 | 10 | 1 | 458 | 779888981 | 779889416 | 6.930000e-131 | 477 |
7 | TraesCS2B01G591000 | chr2A | 91.892 | 185 | 15 | 0 | 2181 | 2365 | 593912618 | 593912802 | 2.730000e-65 | 259 |
8 | TraesCS2B01G591000 | chr7B | 93.678 | 174 | 11 | 0 | 2189 | 2362 | 254091246 | 254091073 | 7.600000e-66 | 261 |
9 | TraesCS2B01G591000 | chr5D | 92.265 | 181 | 14 | 0 | 2184 | 2364 | 501349998 | 501349818 | 9.830000e-65 | 257 |
10 | TraesCS2B01G591000 | chr6D | 92.179 | 179 | 11 | 1 | 2184 | 2362 | 440419767 | 440419592 | 1.640000e-62 | 250 |
11 | TraesCS2B01G591000 | chr6A | 89.944 | 179 | 18 | 0 | 2186 | 2364 | 470142342 | 470142520 | 5.960000e-57 | 231 |
12 | TraesCS2B01G591000 | chr6A | 89.071 | 183 | 18 | 2 | 2186 | 2367 | 31012745 | 31012564 | 2.770000e-55 | 226 |
13 | TraesCS2B01G591000 | chr4A | 89.655 | 174 | 18 | 0 | 2189 | 2362 | 185434224 | 185434051 | 3.580000e-54 | 222 |
14 | TraesCS2B01G591000 | chr5A | 89.205 | 176 | 19 | 0 | 2186 | 2361 | 680718925 | 680718750 | 1.290000e-53 | 220 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2B01G591000 | chr2B | 776706892 | 776709656 | 2764 | True | 5107 | 5107 | 100.000000 | 1 | 2765 | 1 | chr2B.!!$R1 | 2764 |
1 | TraesCS2B01G591000 | chr2D | 633708603 | 633711889 | 3286 | True | 1606 | 2737 | 89.560500 | 1 | 2765 | 2 | chr2D.!!$R1 | 2764 |
2 | TraesCS2B01G591000 | chr2A | 779888981 | 779892101 | 3120 | False | 990 | 1973 | 88.939333 | 1 | 2765 | 3 | chr2A.!!$F2 | 2764 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
272 | 278 | 0.037697 | CACGCTTACTACCACCTGCA | 60.038 | 55.0 | 0.0 | 0.0 | 0.0 | 4.41 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2085 | 3200 | 0.179108 | GAACTGATTCTCGACCCCCG | 60.179 | 60.0 | 0.0 | 0.0 | 40.25 | 5.73 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
31 | 32 | 6.073003 | GCTTATATATTTCATCTATGCCGCCC | 60.073 | 42.308 | 0.00 | 0.00 | 0.00 | 6.13 |
70 | 71 | 6.490566 | ACACGGGATTATTACTTGAAACAC | 57.509 | 37.500 | 0.00 | 0.00 | 0.00 | 3.32 |
71 | 72 | 5.998981 | ACACGGGATTATTACTTGAAACACA | 59.001 | 36.000 | 0.00 | 0.00 | 0.00 | 3.72 |
72 | 73 | 6.072893 | ACACGGGATTATTACTTGAAACACAC | 60.073 | 38.462 | 0.00 | 0.00 | 0.00 | 3.82 |
73 | 74 | 5.998981 | ACGGGATTATTACTTGAAACACACA | 59.001 | 36.000 | 0.00 | 0.00 | 0.00 | 3.72 |
74 | 75 | 6.072893 | ACGGGATTATTACTTGAAACACACAC | 60.073 | 38.462 | 0.00 | 0.00 | 0.00 | 3.82 |
75 | 76 | 6.072948 | CGGGATTATTACTTGAAACACACACA | 60.073 | 38.462 | 0.00 | 0.00 | 0.00 | 3.72 |
76 | 77 | 7.081976 | GGGATTATTACTTGAAACACACACAC | 58.918 | 38.462 | 0.00 | 0.00 | 0.00 | 3.82 |
77 | 78 | 7.255312 | GGGATTATTACTTGAAACACACACACA | 60.255 | 37.037 | 0.00 | 0.00 | 0.00 | 3.72 |
78 | 79 | 8.132362 | GGATTATTACTTGAAACACACACACAA | 58.868 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
79 | 80 | 9.509855 | GATTATTACTTGAAACACACACACAAA | 57.490 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
80 | 81 | 9.862371 | ATTATTACTTGAAACACACACACAAAA | 57.138 | 25.926 | 0.00 | 0.00 | 0.00 | 2.44 |
81 | 82 | 9.692749 | TTATTACTTGAAACACACACACAAAAA | 57.307 | 25.926 | 0.00 | 0.00 | 0.00 | 1.94 |
119 | 120 | 3.241900 | CGATGTGCGAATGTGAAAGAGAG | 60.242 | 47.826 | 0.00 | 0.00 | 44.57 | 3.20 |
163 | 164 | 1.008875 | TCACGTCACGCATGAAGCTC | 61.009 | 55.000 | 0.00 | 0.00 | 42.61 | 4.09 |
165 | 166 | 2.456119 | CGTCACGCATGAAGCTCCC | 61.456 | 63.158 | 0.00 | 0.00 | 42.61 | 4.30 |
170 | 171 | 1.821332 | CGCATGAAGCTCCCCCTTC | 60.821 | 63.158 | 0.00 | 0.00 | 42.61 | 3.46 |
174 | 175 | 2.614013 | GAAGCTCCCCCTTCCCCA | 60.614 | 66.667 | 0.00 | 0.00 | 36.15 | 4.96 |
222 | 223 | 1.748493 | GCCGGCCTGATTAATGTTCAA | 59.252 | 47.619 | 18.11 | 0.00 | 0.00 | 2.69 |
223 | 224 | 2.479560 | GCCGGCCTGATTAATGTTCAAC | 60.480 | 50.000 | 18.11 | 0.00 | 0.00 | 3.18 |
261 | 262 | 3.426191 | TCAACGTAATCACACACGCTTAC | 59.574 | 43.478 | 0.00 | 0.00 | 41.80 | 2.34 |
264 | 265 | 4.161333 | ACGTAATCACACACGCTTACTAC | 58.839 | 43.478 | 0.00 | 0.00 | 41.80 | 2.73 |
272 | 278 | 0.037697 | CACGCTTACTACCACCTGCA | 60.038 | 55.000 | 0.00 | 0.00 | 0.00 | 4.41 |
303 | 309 | 1.306141 | TGAGAGGCATCTTCCGGGT | 60.306 | 57.895 | 0.76 | 0.00 | 35.30 | 5.28 |
361 | 368 | 6.170506 | TGCCGGATACACATTAATCTATTCC | 58.829 | 40.000 | 5.05 | 0.00 | 0.00 | 3.01 |
362 | 369 | 5.585047 | GCCGGATACACATTAATCTATTCCC | 59.415 | 44.000 | 5.05 | 0.00 | 0.00 | 3.97 |
363 | 370 | 5.810587 | CCGGATACACATTAATCTATTCCCG | 59.189 | 44.000 | 0.00 | 0.00 | 0.00 | 5.14 |
386 | 393 | 2.357517 | CACCTGACCCACGACAGC | 60.358 | 66.667 | 0.00 | 0.00 | 33.40 | 4.40 |
474 | 628 | 0.999406 | CATGTCCTTACTCGGTTGCG | 59.001 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
493 | 647 | 1.393539 | CGACCATTCAACACGATGGAC | 59.606 | 52.381 | 9.20 | 2.54 | 37.60 | 4.02 |
543 | 800 | 3.011818 | TGAGCACATGACTAAATGCCTG | 58.988 | 45.455 | 0.00 | 0.00 | 38.92 | 4.85 |
554 | 811 | 0.749454 | AAATGCCTGGCTCGATGGAC | 60.749 | 55.000 | 21.03 | 0.00 | 0.00 | 4.02 |
555 | 812 | 1.913951 | AATGCCTGGCTCGATGGACA | 61.914 | 55.000 | 21.03 | 0.00 | 0.00 | 4.02 |
556 | 813 | 2.512515 | GCCTGGCTCGATGGACAC | 60.513 | 66.667 | 12.43 | 0.00 | 0.00 | 3.67 |
590 | 848 | 2.389059 | TCGCGTACGACTAGCTAGTAG | 58.611 | 52.381 | 26.11 | 26.42 | 45.12 | 2.57 |
707 | 983 | 3.615849 | GAGACAGCCACTGTTTCAAAG | 57.384 | 47.619 | 12.02 | 0.00 | 45.44 | 2.77 |
750 | 1026 | 3.788766 | AAGTCAATCACGCGCGCC | 61.789 | 61.111 | 32.58 | 8.75 | 0.00 | 6.53 |
790 | 1083 | 0.798771 | CGAGACCGGAAGAAAGCTCG | 60.799 | 60.000 | 9.46 | 10.53 | 39.12 | 5.03 |
824 | 1118 | 2.730094 | CCAAGCAGCACCAACCAC | 59.270 | 61.111 | 0.00 | 0.00 | 0.00 | 4.16 |
825 | 1119 | 2.126596 | CCAAGCAGCACCAACCACA | 61.127 | 57.895 | 0.00 | 0.00 | 0.00 | 4.17 |
826 | 1120 | 1.066257 | CAAGCAGCACCAACCACAC | 59.934 | 57.895 | 0.00 | 0.00 | 0.00 | 3.82 |
827 | 1121 | 1.379710 | AAGCAGCACCAACCACACA | 60.380 | 52.632 | 0.00 | 0.00 | 0.00 | 3.72 |
852 | 1150 | 0.603707 | ACTTGACACCAGCCATCACG | 60.604 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
874 | 1172 | 3.992943 | ATAAACTTGGACCCGATCACA | 57.007 | 42.857 | 0.00 | 0.00 | 0.00 | 3.58 |
875 | 1173 | 2.879103 | AAACTTGGACCCGATCACAT | 57.121 | 45.000 | 0.00 | 0.00 | 0.00 | 3.21 |
902 | 1200 | 3.065575 | CCACTACATCGGTGGCTTC | 57.934 | 57.895 | 0.00 | 0.00 | 45.97 | 3.86 |
918 | 1216 | 5.281727 | GTGGCTTCGAACATTTTCTTTCTT | 58.718 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
919 | 1217 | 5.173854 | GTGGCTTCGAACATTTTCTTTCTTG | 59.826 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
976 | 1282 | 5.873211 | GCTGTAAGAAGCAAGAAAACAAC | 57.127 | 39.130 | 0.00 | 0.00 | 43.01 | 3.32 |
977 | 1283 | 5.582550 | GCTGTAAGAAGCAAGAAAACAACT | 58.417 | 37.500 | 0.00 | 0.00 | 43.01 | 3.16 |
978 | 1284 | 6.725246 | GCTGTAAGAAGCAAGAAAACAACTA | 58.275 | 36.000 | 0.00 | 0.00 | 43.01 | 2.24 |
1662 | 1974 | 0.037326 | TCAAGCTGTGGACGATGACC | 60.037 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1733 | 2045 | 3.499737 | CCGCATCCGCTCCAACAC | 61.500 | 66.667 | 0.00 | 0.00 | 35.30 | 3.32 |
1757 | 2069 | 2.079925 | CACCTTCAAGCTCAAGCCTAC | 58.920 | 52.381 | 0.00 | 0.00 | 43.38 | 3.18 |
1759 | 2071 | 3.055819 | CACCTTCAAGCTCAAGCCTACTA | 60.056 | 47.826 | 0.00 | 0.00 | 43.38 | 1.82 |
1760 | 2072 | 3.196685 | ACCTTCAAGCTCAAGCCTACTAG | 59.803 | 47.826 | 0.00 | 0.00 | 43.38 | 2.57 |
1761 | 2073 | 3.431486 | CCTTCAAGCTCAAGCCTACTAGG | 60.431 | 52.174 | 0.00 | 0.00 | 43.38 | 3.02 |
1768 | 2080 | 3.189702 | GCTCAAGCCTACTAGGTAGATCG | 59.810 | 52.174 | 3.95 | 0.00 | 38.29 | 3.69 |
1818 | 2130 | 5.694458 | GGATTGTGCATATATACGTGTGTCA | 59.306 | 40.000 | 0.00 | 0.00 | 0.00 | 3.58 |
1823 | 2135 | 6.861055 | TGTGCATATATACGTGTGTCATGTAG | 59.139 | 38.462 | 0.00 | 0.00 | 38.90 | 2.74 |
1831 | 2143 | 4.529897 | ACGTGTGTCATGTAGGTAGGATA | 58.470 | 43.478 | 0.00 | 0.00 | 31.23 | 2.59 |
1832 | 2144 | 4.951715 | ACGTGTGTCATGTAGGTAGGATAA | 59.048 | 41.667 | 0.00 | 0.00 | 31.23 | 1.75 |
1833 | 2145 | 5.597182 | ACGTGTGTCATGTAGGTAGGATAAT | 59.403 | 40.000 | 0.00 | 0.00 | 31.23 | 1.28 |
1868 | 2180 | 2.899900 | TCCCCATTCCTGTCGATCTATG | 59.100 | 50.000 | 0.00 | 0.00 | 0.00 | 2.23 |
1958 | 2274 | 8.289618 | GGCTCGCATATTCATTATTTTTAGTGA | 58.710 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
1984 | 2300 | 7.368833 | AGTAAATAAGATCCGAGGTGTATTCG | 58.631 | 38.462 | 0.00 | 0.00 | 37.78 | 3.34 |
1990 | 2307 | 0.368907 | CCGAGGTGTATTCGTTTGCG | 59.631 | 55.000 | 0.00 | 0.00 | 36.37 | 4.85 |
2008 | 2325 | 3.738982 | TGCGATGAGTTTCTTTGGAGAA | 58.261 | 40.909 | 0.00 | 0.00 | 40.07 | 2.87 |
2040 | 2357 | 5.295950 | AGAGAAGATATTGGCTCATGAACG | 58.704 | 41.667 | 0.00 | 0.00 | 0.00 | 3.95 |
2046 | 2363 | 0.955428 | TTGGCTCATGAACGCAGTCC | 60.955 | 55.000 | 8.97 | 0.00 | 45.00 | 3.85 |
2047 | 2364 | 1.375908 | GGCTCATGAACGCAGTCCA | 60.376 | 57.895 | 8.97 | 0.00 | 45.00 | 4.02 |
2048 | 2365 | 0.745845 | GGCTCATGAACGCAGTCCAT | 60.746 | 55.000 | 8.97 | 0.00 | 45.00 | 3.41 |
2049 | 2366 | 1.473257 | GGCTCATGAACGCAGTCCATA | 60.473 | 52.381 | 8.97 | 0.00 | 45.00 | 2.74 |
2052 | 2370 | 2.212652 | TCATGAACGCAGTCCATATGC | 58.787 | 47.619 | 0.00 | 0.00 | 45.00 | 3.14 |
2085 | 3200 | 2.109181 | GGGGCGTCATGAGTAGGC | 59.891 | 66.667 | 0.00 | 3.06 | 0.00 | 3.93 |
2093 | 3211 | 2.838225 | ATGAGTAGGCGGGGGTCG | 60.838 | 66.667 | 0.00 | 0.00 | 42.76 | 4.79 |
2123 | 3241 | 8.391075 | TCAGTTCCAAAGTTCTTTTATACTGG | 57.609 | 34.615 | 18.87 | 9.66 | 34.60 | 4.00 |
2124 | 3242 | 7.996644 | TCAGTTCCAAAGTTCTTTTATACTGGT | 59.003 | 33.333 | 18.87 | 0.00 | 34.60 | 4.00 |
2125 | 3243 | 8.290325 | CAGTTCCAAAGTTCTTTTATACTGGTC | 58.710 | 37.037 | 15.16 | 6.01 | 32.56 | 4.02 |
2126 | 3244 | 7.996644 | AGTTCCAAAGTTCTTTTATACTGGTCA | 59.003 | 33.333 | 0.00 | 0.00 | 0.00 | 4.02 |
2127 | 3245 | 8.793592 | GTTCCAAAGTTCTTTTATACTGGTCAT | 58.206 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
2134 | 3252 | 9.838339 | AGTTCTTTTATACTGGTCATAATGGAG | 57.162 | 33.333 | 0.00 | 0.00 | 0.00 | 3.86 |
2135 | 3253 | 9.832445 | GTTCTTTTATACTGGTCATAATGGAGA | 57.168 | 33.333 | 0.00 | 0.00 | 0.00 | 3.71 |
2137 | 3255 | 8.150945 | TCTTTTATACTGGTCATAATGGAGAGC | 58.849 | 37.037 | 0.00 | 0.00 | 0.00 | 4.09 |
2138 | 3256 | 6.994421 | TTATACTGGTCATAATGGAGAGCA | 57.006 | 37.500 | 0.00 | 0.00 | 39.66 | 4.26 |
2139 | 3257 | 3.550437 | ACTGGTCATAATGGAGAGCAC | 57.450 | 47.619 | 0.00 | 0.00 | 37.34 | 4.40 |
2140 | 3258 | 2.840038 | ACTGGTCATAATGGAGAGCACA | 59.160 | 45.455 | 0.00 | 0.00 | 37.34 | 4.57 |
2141 | 3259 | 3.457380 | ACTGGTCATAATGGAGAGCACAT | 59.543 | 43.478 | 0.00 | 0.00 | 37.34 | 3.21 |
2142 | 3260 | 3.812262 | TGGTCATAATGGAGAGCACATG | 58.188 | 45.455 | 0.00 | 0.00 | 37.34 | 3.21 |
2143 | 3261 | 3.455543 | TGGTCATAATGGAGAGCACATGA | 59.544 | 43.478 | 0.00 | 0.00 | 37.34 | 3.07 |
2144 | 3262 | 3.812053 | GGTCATAATGGAGAGCACATGAC | 59.188 | 47.826 | 0.00 | 0.00 | 40.84 | 3.06 |
2145 | 3263 | 4.445453 | GTCATAATGGAGAGCACATGACA | 58.555 | 43.478 | 0.00 | 0.00 | 41.09 | 3.58 |
2146 | 3264 | 4.272018 | GTCATAATGGAGAGCACATGACAC | 59.728 | 45.833 | 0.00 | 0.00 | 41.09 | 3.67 |
2147 | 3265 | 4.162888 | TCATAATGGAGAGCACATGACACT | 59.837 | 41.667 | 0.00 | 0.00 | 0.00 | 3.55 |
2148 | 3266 | 2.398252 | ATGGAGAGCACATGACACTG | 57.602 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
2149 | 3267 | 0.322648 | TGGAGAGCACATGACACTGG | 59.677 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2150 | 3268 | 0.322975 | GGAGAGCACATGACACTGGT | 59.677 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2151 | 3269 | 1.550524 | GGAGAGCACATGACACTGGTA | 59.449 | 52.381 | 0.00 | 0.00 | 0.00 | 3.25 |
2152 | 3270 | 2.417924 | GGAGAGCACATGACACTGGTAG | 60.418 | 54.545 | 0.00 | 0.00 | 0.00 | 3.18 |
2153 | 3271 | 2.232452 | GAGAGCACATGACACTGGTAGT | 59.768 | 50.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2154 | 3272 | 2.232452 | AGAGCACATGACACTGGTAGTC | 59.768 | 50.000 | 0.00 | 0.00 | 36.55 | 2.59 |
2155 | 3273 | 2.232452 | GAGCACATGACACTGGTAGTCT | 59.768 | 50.000 | 0.00 | 0.00 | 36.94 | 3.24 |
2156 | 3274 | 3.431415 | AGCACATGACACTGGTAGTCTA | 58.569 | 45.455 | 0.00 | 0.00 | 36.94 | 2.59 |
2157 | 3275 | 3.832490 | AGCACATGACACTGGTAGTCTAA | 59.168 | 43.478 | 0.00 | 0.00 | 36.94 | 2.10 |
2158 | 3276 | 4.081972 | AGCACATGACACTGGTAGTCTAAG | 60.082 | 45.833 | 0.00 | 0.00 | 36.94 | 2.18 |
2159 | 3277 | 4.322049 | GCACATGACACTGGTAGTCTAAGT | 60.322 | 45.833 | 0.00 | 0.00 | 36.94 | 2.24 |
2160 | 3278 | 5.784177 | CACATGACACTGGTAGTCTAAGTT | 58.216 | 41.667 | 0.00 | 0.00 | 36.94 | 2.66 |
2161 | 3279 | 6.223852 | CACATGACACTGGTAGTCTAAGTTT | 58.776 | 40.000 | 0.00 | 0.00 | 36.94 | 2.66 |
2162 | 3280 | 7.375834 | CACATGACACTGGTAGTCTAAGTTTA | 58.624 | 38.462 | 0.00 | 0.00 | 36.94 | 2.01 |
2163 | 3281 | 7.328737 | CACATGACACTGGTAGTCTAAGTTTAC | 59.671 | 40.741 | 0.00 | 0.00 | 36.94 | 2.01 |
2164 | 3282 | 6.336842 | TGACACTGGTAGTCTAAGTTTACC | 57.663 | 41.667 | 0.00 | 0.00 | 37.84 | 2.85 |
2165 | 3283 | 5.834742 | TGACACTGGTAGTCTAAGTTTACCA | 59.165 | 40.000 | 4.50 | 4.50 | 43.30 | 3.25 |
2166 | 3284 | 6.495872 | TGACACTGGTAGTCTAAGTTTACCAT | 59.504 | 38.462 | 4.93 | 0.00 | 44.16 | 3.55 |
2167 | 3285 | 6.932947 | ACACTGGTAGTCTAAGTTTACCATC | 58.067 | 40.000 | 4.93 | 0.00 | 44.16 | 3.51 |
2168 | 3286 | 6.724905 | ACACTGGTAGTCTAAGTTTACCATCT | 59.275 | 38.462 | 4.93 | 0.00 | 44.16 | 2.90 |
2169 | 3287 | 7.234988 | ACACTGGTAGTCTAAGTTTACCATCTT | 59.765 | 37.037 | 4.93 | 0.00 | 44.16 | 2.40 |
2170 | 3288 | 8.095169 | CACTGGTAGTCTAAGTTTACCATCTTT | 58.905 | 37.037 | 4.93 | 0.00 | 44.16 | 2.52 |
2171 | 3289 | 9.317827 | ACTGGTAGTCTAAGTTTACCATCTTTA | 57.682 | 33.333 | 4.93 | 0.00 | 44.16 | 1.85 |
2177 | 3295 | 9.819267 | AGTCTAAGTTTACCATCTTTATAGTGC | 57.181 | 33.333 | 0.00 | 0.00 | 0.00 | 4.40 |
2178 | 3296 | 9.595823 | GTCTAAGTTTACCATCTTTATAGTGCA | 57.404 | 33.333 | 0.00 | 0.00 | 0.00 | 4.57 |
2182 | 3300 | 8.281212 | AGTTTACCATCTTTATAGTGCAAAGG | 57.719 | 34.615 | 0.00 | 0.00 | 34.43 | 3.11 |
2183 | 3301 | 8.107095 | AGTTTACCATCTTTATAGTGCAAAGGA | 58.893 | 33.333 | 0.00 | 0.00 | 34.43 | 3.36 |
2184 | 3302 | 8.736244 | GTTTACCATCTTTATAGTGCAAAGGAA | 58.264 | 33.333 | 0.00 | 0.00 | 34.43 | 3.36 |
2185 | 3303 | 6.759497 | ACCATCTTTATAGTGCAAAGGAAC | 57.241 | 37.500 | 0.00 | 0.00 | 34.43 | 3.62 |
2186 | 3304 | 6.245408 | ACCATCTTTATAGTGCAAAGGAACA | 58.755 | 36.000 | 0.00 | 0.00 | 34.43 | 3.18 |
2187 | 3305 | 6.891908 | ACCATCTTTATAGTGCAAAGGAACAT | 59.108 | 34.615 | 0.00 | 0.00 | 34.43 | 2.71 |
2188 | 3306 | 8.052748 | ACCATCTTTATAGTGCAAAGGAACATA | 58.947 | 33.333 | 0.00 | 0.00 | 34.43 | 2.29 |
2189 | 3307 | 9.071276 | CCATCTTTATAGTGCAAAGGAACATAT | 57.929 | 33.333 | 0.00 | 0.00 | 34.43 | 1.78 |
2194 | 3312 | 9.860650 | TTTATAGTGCAAAGGAACATATATGGT | 57.139 | 29.630 | 16.96 | 10.62 | 0.00 | 3.55 |
2195 | 3313 | 9.860650 | TTATAGTGCAAAGGAACATATATGGTT | 57.139 | 29.630 | 16.96 | 8.61 | 0.00 | 3.67 |
2196 | 3314 | 6.455360 | AGTGCAAAGGAACATATATGGTTG | 57.545 | 37.500 | 16.96 | 6.73 | 0.00 | 3.77 |
2197 | 3315 | 5.043248 | GTGCAAAGGAACATATATGGTTGC | 58.957 | 41.667 | 16.96 | 16.05 | 36.91 | 4.17 |
2198 | 3316 | 4.708909 | TGCAAAGGAACATATATGGTTGCA | 59.291 | 37.500 | 19.27 | 19.27 | 38.82 | 4.08 |
2199 | 3317 | 5.363292 | TGCAAAGGAACATATATGGTTGCAT | 59.637 | 36.000 | 19.27 | 7.33 | 38.82 | 3.96 |
2200 | 3318 | 6.127111 | TGCAAAGGAACATATATGGTTGCATT | 60.127 | 34.615 | 19.27 | 11.60 | 38.82 | 3.56 |
2201 | 3319 | 6.762661 | GCAAAGGAACATATATGGTTGCATTT | 59.237 | 34.615 | 16.71 | 7.90 | 38.82 | 2.32 |
2202 | 3320 | 7.925483 | GCAAAGGAACATATATGGTTGCATTTA | 59.075 | 33.333 | 16.71 | 0.00 | 38.82 | 1.40 |
2203 | 3321 | 9.985730 | CAAAGGAACATATATGGTTGCATTTAT | 57.014 | 29.630 | 16.96 | 0.00 | 38.82 | 1.40 |
2207 | 3325 | 9.573133 | GGAACATATATGGTTGCATTTATTAGC | 57.427 | 33.333 | 16.96 | 0.00 | 36.69 | 3.09 |
2214 | 3332 | 7.880160 | ATGGTTGCATTTATTAGCTTGTAGA | 57.120 | 32.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2215 | 3333 | 7.083875 | TGGTTGCATTTATTAGCTTGTAGAC | 57.916 | 36.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2216 | 3334 | 6.884295 | TGGTTGCATTTATTAGCTTGTAGACT | 59.116 | 34.615 | 0.00 | 0.00 | 0.00 | 3.24 |
2217 | 3335 | 7.065803 | TGGTTGCATTTATTAGCTTGTAGACTC | 59.934 | 37.037 | 0.00 | 0.00 | 0.00 | 3.36 |
2218 | 3336 | 7.065803 | GGTTGCATTTATTAGCTTGTAGACTCA | 59.934 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
2219 | 3337 | 8.450964 | GTTGCATTTATTAGCTTGTAGACTCAA | 58.549 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
2220 | 3338 | 7.974675 | TGCATTTATTAGCTTGTAGACTCAAC | 58.025 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
2221 | 3339 | 7.824289 | TGCATTTATTAGCTTGTAGACTCAACT | 59.176 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
2222 | 3340 | 8.669243 | GCATTTATTAGCTTGTAGACTCAACTT | 58.331 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
2243 | 3361 | 3.717400 | TTTTTGGCAAACGCTATGTGA | 57.283 | 38.095 | 13.10 | 0.00 | 0.00 | 3.58 |
2244 | 3362 | 3.932545 | TTTTGGCAAACGCTATGTGAT | 57.067 | 38.095 | 13.10 | 0.00 | 0.00 | 3.06 |
2245 | 3363 | 2.917701 | TTGGCAAACGCTATGTGATG | 57.082 | 45.000 | 0.00 | 0.00 | 0.00 | 3.07 |
2246 | 3364 | 1.093972 | TGGCAAACGCTATGTGATGG | 58.906 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2247 | 3365 | 1.094785 | GGCAAACGCTATGTGATGGT | 58.905 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
2248 | 3366 | 2.285083 | GGCAAACGCTATGTGATGGTA | 58.715 | 47.619 | 0.00 | 0.00 | 0.00 | 3.25 |
2249 | 3367 | 2.680841 | GGCAAACGCTATGTGATGGTAA | 59.319 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
2250 | 3368 | 3.486875 | GGCAAACGCTATGTGATGGTAAC | 60.487 | 47.826 | 0.00 | 0.00 | 0.00 | 2.50 |
2274 | 3392 | 8.788325 | ACATAATAAGTTACTCCAAACACCTC | 57.212 | 34.615 | 0.00 | 0.00 | 0.00 | 3.85 |
2275 | 3393 | 8.603304 | ACATAATAAGTTACTCCAAACACCTCT | 58.397 | 33.333 | 0.00 | 0.00 | 0.00 | 3.69 |
2276 | 3394 | 9.099454 | CATAATAAGTTACTCCAAACACCTCTC | 57.901 | 37.037 | 0.00 | 0.00 | 0.00 | 3.20 |
2277 | 3395 | 6.936968 | ATAAGTTACTCCAAACACCTCTCT | 57.063 | 37.500 | 0.00 | 0.00 | 0.00 | 3.10 |
2278 | 3396 | 5.632034 | AAGTTACTCCAAACACCTCTCTT | 57.368 | 39.130 | 0.00 | 0.00 | 0.00 | 2.85 |
2279 | 3397 | 5.632034 | AGTTACTCCAAACACCTCTCTTT | 57.368 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
2280 | 3398 | 6.002653 | AGTTACTCCAAACACCTCTCTTTT | 57.997 | 37.500 | 0.00 | 0.00 | 0.00 | 2.27 |
2281 | 3399 | 6.424032 | AGTTACTCCAAACACCTCTCTTTTT | 58.576 | 36.000 | 0.00 | 0.00 | 0.00 | 1.94 |
2282 | 3400 | 7.571025 | AGTTACTCCAAACACCTCTCTTTTTA | 58.429 | 34.615 | 0.00 | 0.00 | 0.00 | 1.52 |
2283 | 3401 | 8.218488 | AGTTACTCCAAACACCTCTCTTTTTAT | 58.782 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2284 | 3402 | 8.847196 | GTTACTCCAAACACCTCTCTTTTTATT | 58.153 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2286 | 3404 | 8.990163 | ACTCCAAACACCTCTCTTTTTATTAA | 57.010 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
2287 | 3405 | 9.588096 | ACTCCAAACACCTCTCTTTTTATTAAT | 57.412 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2294 | 3412 | 8.678199 | ACACCTCTCTTTTTATTAATTAGCTGC | 58.322 | 33.333 | 0.00 | 0.00 | 0.00 | 5.25 |
2295 | 3413 | 8.131731 | CACCTCTCTTTTTATTAATTAGCTGCC | 58.868 | 37.037 | 0.00 | 0.00 | 0.00 | 4.85 |
2296 | 3414 | 7.834181 | ACCTCTCTTTTTATTAATTAGCTGCCA | 59.166 | 33.333 | 0.00 | 0.00 | 0.00 | 4.92 |
2297 | 3415 | 8.131731 | CCTCTCTTTTTATTAATTAGCTGCCAC | 58.868 | 37.037 | 0.00 | 0.00 | 0.00 | 5.01 |
2298 | 3416 | 8.574251 | TCTCTTTTTATTAATTAGCTGCCACA | 57.426 | 30.769 | 0.00 | 0.00 | 0.00 | 4.17 |
2299 | 3417 | 9.189156 | TCTCTTTTTATTAATTAGCTGCCACAT | 57.811 | 29.630 | 0.00 | 0.00 | 0.00 | 3.21 |
2303 | 3421 | 9.528018 | TTTTTATTAATTAGCTGCCACATAAGC | 57.472 | 29.630 | 0.00 | 0.00 | 39.82 | 3.09 |
2304 | 3422 | 7.815840 | TTATTAATTAGCTGCCACATAAGCA | 57.184 | 32.000 | 0.00 | 0.00 | 42.06 | 3.91 |
2305 | 3423 | 6.713762 | ATTAATTAGCTGCCACATAAGCAA | 57.286 | 33.333 | 0.00 | 0.00 | 42.06 | 3.91 |
2306 | 3424 | 6.522625 | TTAATTAGCTGCCACATAAGCAAA | 57.477 | 33.333 | 0.00 | 0.00 | 42.06 | 3.68 |
2307 | 3425 | 3.848272 | TTAGCTGCCACATAAGCAAAC | 57.152 | 42.857 | 0.00 | 0.00 | 42.06 | 2.93 |
2308 | 3426 | 1.915141 | AGCTGCCACATAAGCAAACT | 58.085 | 45.000 | 0.00 | 0.00 | 42.06 | 2.66 |
2309 | 3427 | 2.242043 | AGCTGCCACATAAGCAAACTT | 58.758 | 42.857 | 0.00 | 0.00 | 42.06 | 2.66 |
2310 | 3428 | 2.029649 | AGCTGCCACATAAGCAAACTTG | 60.030 | 45.455 | 0.00 | 0.00 | 42.06 | 3.16 |
2311 | 3429 | 2.288395 | GCTGCCACATAAGCAAACTTGT | 60.288 | 45.455 | 0.00 | 0.00 | 40.35 | 3.16 |
2312 | 3430 | 3.568538 | CTGCCACATAAGCAAACTTGTC | 58.431 | 45.455 | 0.00 | 0.00 | 40.35 | 3.18 |
2313 | 3431 | 3.221771 | TGCCACATAAGCAAACTTGTCT | 58.778 | 40.909 | 0.00 | 0.00 | 37.28 | 3.41 |
2314 | 3432 | 3.253188 | TGCCACATAAGCAAACTTGTCTC | 59.747 | 43.478 | 0.00 | 0.00 | 37.28 | 3.36 |
2315 | 3433 | 3.667960 | GCCACATAAGCAAACTTGTCTCG | 60.668 | 47.826 | 0.00 | 0.00 | 36.57 | 4.04 |
2316 | 3434 | 3.120199 | CCACATAAGCAAACTTGTCTCGG | 60.120 | 47.826 | 0.00 | 0.00 | 36.57 | 4.63 |
2317 | 3435 | 3.074412 | ACATAAGCAAACTTGTCTCGGG | 58.926 | 45.455 | 0.00 | 0.00 | 36.57 | 5.14 |
2318 | 3436 | 3.244422 | ACATAAGCAAACTTGTCTCGGGA | 60.244 | 43.478 | 0.00 | 0.00 | 36.57 | 5.14 |
2319 | 3437 | 2.568623 | AAGCAAACTTGTCTCGGGAT | 57.431 | 45.000 | 0.00 | 0.00 | 33.84 | 3.85 |
2320 | 3438 | 3.695830 | AAGCAAACTTGTCTCGGGATA | 57.304 | 42.857 | 0.00 | 0.00 | 33.84 | 2.59 |
2321 | 3439 | 3.914426 | AGCAAACTTGTCTCGGGATAT | 57.086 | 42.857 | 0.00 | 0.00 | 0.00 | 1.63 |
2322 | 3440 | 3.535561 | AGCAAACTTGTCTCGGGATATG | 58.464 | 45.455 | 0.00 | 0.00 | 0.00 | 1.78 |
2323 | 3441 | 3.055094 | AGCAAACTTGTCTCGGGATATGT | 60.055 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
2324 | 3442 | 3.689649 | GCAAACTTGTCTCGGGATATGTT | 59.310 | 43.478 | 7.39 | 7.39 | 34.32 | 2.71 |
2325 | 3443 | 4.873827 | GCAAACTTGTCTCGGGATATGTTA | 59.126 | 41.667 | 12.65 | 0.00 | 32.71 | 2.41 |
2326 | 3444 | 5.527582 | GCAAACTTGTCTCGGGATATGTTAT | 59.472 | 40.000 | 12.65 | 2.85 | 32.71 | 1.89 |
2327 | 3445 | 6.511767 | GCAAACTTGTCTCGGGATATGTTATG | 60.512 | 42.308 | 12.65 | 13.02 | 32.71 | 1.90 |
2328 | 3446 | 5.871396 | ACTTGTCTCGGGATATGTTATGT | 57.129 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
2329 | 3447 | 6.235231 | ACTTGTCTCGGGATATGTTATGTT | 57.765 | 37.500 | 0.00 | 0.00 | 0.00 | 2.71 |
2330 | 3448 | 7.356089 | ACTTGTCTCGGGATATGTTATGTTA | 57.644 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
2331 | 3449 | 7.208080 | ACTTGTCTCGGGATATGTTATGTTAC | 58.792 | 38.462 | 0.00 | 0.00 | 0.00 | 2.50 |
2332 | 3450 | 6.971726 | TGTCTCGGGATATGTTATGTTACT | 57.028 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
2333 | 3451 | 7.356089 | TGTCTCGGGATATGTTATGTTACTT | 57.644 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2334 | 3452 | 8.467963 | TGTCTCGGGATATGTTATGTTACTTA | 57.532 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
2335 | 3453 | 8.355169 | TGTCTCGGGATATGTTATGTTACTTAC | 58.645 | 37.037 | 0.00 | 0.00 | 0.00 | 2.34 |
2336 | 3454 | 8.574737 | GTCTCGGGATATGTTATGTTACTTACT | 58.425 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
2337 | 3455 | 9.797642 | TCTCGGGATATGTTATGTTACTTACTA | 57.202 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
2359 | 3477 | 7.450903 | ACTATGTTATTCCCACTATAACCAGC | 58.549 | 38.462 | 0.00 | 0.00 | 37.56 | 4.85 |
2360 | 3478 | 5.043737 | TGTTATTCCCACTATAACCAGCC | 57.956 | 43.478 | 0.00 | 0.00 | 37.56 | 4.85 |
2361 | 3479 | 4.724798 | TGTTATTCCCACTATAACCAGCCT | 59.275 | 41.667 | 0.00 | 0.00 | 37.56 | 4.58 |
2362 | 3480 | 5.192923 | TGTTATTCCCACTATAACCAGCCTT | 59.807 | 40.000 | 0.00 | 0.00 | 37.56 | 4.35 |
2363 | 3481 | 6.387513 | TGTTATTCCCACTATAACCAGCCTTA | 59.612 | 38.462 | 0.00 | 0.00 | 37.56 | 2.69 |
2364 | 3482 | 7.073215 | TGTTATTCCCACTATAACCAGCCTTAT | 59.927 | 37.037 | 0.00 | 0.00 | 37.56 | 1.73 |
2365 | 3483 | 4.974645 | TCCCACTATAACCAGCCTTATG | 57.025 | 45.455 | 0.00 | 0.00 | 0.00 | 1.90 |
2382 | 3500 | 4.503296 | CCTTATGAGTTAAGCCGCACCTAT | 60.503 | 45.833 | 0.00 | 0.00 | 36.71 | 2.57 |
2394 | 3512 | 2.618709 | CCGCACCTATCCAAATTCCTTC | 59.381 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
2406 | 3524 | 4.020839 | CCAAATTCCTTCAACTGCTCCAAT | 60.021 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
2445 | 3563 | 2.091541 | TGCCGGCTCTTAATTTTGAGG | 58.908 | 47.619 | 29.70 | 0.00 | 0.00 | 3.86 |
2462 | 3580 | 0.264657 | AGGCCCCCAAACAAGTTCTT | 59.735 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2487 | 3606 | 4.617762 | GCAAAAAGATCCCTTCAGCTTCAG | 60.618 | 45.833 | 0.00 | 0.00 | 0.00 | 3.02 |
2488 | 3607 | 3.362870 | AAAGATCCCTTCAGCTTCAGG | 57.637 | 47.619 | 1.27 | 1.27 | 0.00 | 3.86 |
2489 | 3608 | 1.963985 | AGATCCCTTCAGCTTCAGGT | 58.036 | 50.000 | 7.12 | 0.00 | 0.00 | 4.00 |
2493 | 3617 | 0.695347 | CCCTTCAGCTTCAGGTTCCT | 59.305 | 55.000 | 7.12 | 0.00 | 0.00 | 3.36 |
2545 | 3669 | 4.830765 | CCGCCTCCGCCGATTTCA | 62.831 | 66.667 | 0.00 | 0.00 | 0.00 | 2.69 |
2549 | 3673 | 0.455815 | GCCTCCGCCGATTTCATTTT | 59.544 | 50.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2555 | 3679 | 2.163412 | CCGCCGATTTCATTTTCCTCAA | 59.837 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
2565 | 3689 | 5.209818 | TCATTTTCCTCAACGACTACTGT | 57.790 | 39.130 | 0.00 | 0.00 | 0.00 | 3.55 |
2576 | 3700 | 4.742201 | CTACTGTGCACGCCGGCT | 62.742 | 66.667 | 26.68 | 8.92 | 34.04 | 5.52 |
2643 | 3768 | 4.357947 | GCTCGTCGGCTGACACCA | 62.358 | 66.667 | 24.91 | 7.56 | 45.80 | 4.17 |
2646 | 3771 | 1.583495 | CTCGTCGGCTGACACCACTA | 61.583 | 60.000 | 24.91 | 2.59 | 45.80 | 2.74 |
2680 | 3805 | 3.524826 | CATATCTCCCTCCTTCCCATGA | 58.475 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
11 | 12 | 5.045942 | TCAAGGGCGGCATAGATGAAATATA | 60.046 | 40.000 | 12.47 | 0.00 | 0.00 | 0.86 |
14 | 15 | 2.158623 | TCAAGGGCGGCATAGATGAAAT | 60.159 | 45.455 | 12.47 | 0.00 | 0.00 | 2.17 |
15 | 16 | 1.211703 | TCAAGGGCGGCATAGATGAAA | 59.788 | 47.619 | 12.47 | 0.00 | 0.00 | 2.69 |
16 | 17 | 0.836606 | TCAAGGGCGGCATAGATGAA | 59.163 | 50.000 | 12.47 | 0.00 | 0.00 | 2.57 |
17 | 18 | 0.394192 | CTCAAGGGCGGCATAGATGA | 59.606 | 55.000 | 12.47 | 3.56 | 0.00 | 2.92 |
18 | 19 | 0.394192 | TCTCAAGGGCGGCATAGATG | 59.606 | 55.000 | 12.47 | 0.00 | 0.00 | 2.90 |
31 | 32 | 5.479306 | TCCCGTGTTAAGAAGATTCTCAAG | 58.521 | 41.667 | 0.00 | 0.00 | 36.28 | 3.02 |
98 | 99 | 3.928992 | TCTCTCTTTCACATTCGCACATC | 59.071 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
165 | 166 | 4.410400 | GGTGCGTCTGGGGAAGGG | 62.410 | 72.222 | 0.00 | 0.00 | 0.00 | 3.95 |
210 | 211 | 6.198216 | GTGGTTGTGTGTGTTGAACATTAATC | 59.802 | 38.462 | 0.00 | 0.00 | 41.97 | 1.75 |
222 | 223 | 1.450669 | GACCGGTGGTTGTGTGTGT | 60.451 | 57.895 | 14.63 | 0.00 | 35.25 | 3.72 |
223 | 224 | 1.027255 | TTGACCGGTGGTTGTGTGTG | 61.027 | 55.000 | 14.63 | 0.00 | 35.25 | 3.82 |
261 | 262 | 2.434884 | CAGCCGTGCAGGTGGTAG | 60.435 | 66.667 | 5.57 | 0.00 | 43.70 | 3.18 |
303 | 309 | 4.491676 | GGGACGCTATCGCTGAATAATTA | 58.508 | 43.478 | 0.00 | 0.00 | 39.84 | 1.40 |
327 | 334 | 0.239347 | GTATCCGGCAATGCATCAGC | 59.761 | 55.000 | 7.79 | 13.95 | 42.57 | 4.26 |
328 | 335 | 1.265095 | GTGTATCCGGCAATGCATCAG | 59.735 | 52.381 | 7.79 | 0.00 | 0.00 | 2.90 |
361 | 368 | 0.602905 | GTGGGTCAGGTGAAAGTCGG | 60.603 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
362 | 369 | 0.944311 | CGTGGGTCAGGTGAAAGTCG | 60.944 | 60.000 | 0.00 | 0.00 | 0.00 | 4.18 |
363 | 370 | 0.391597 | TCGTGGGTCAGGTGAAAGTC | 59.608 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
386 | 393 | 4.147449 | TCACGGGATGCCTCAGCG | 62.147 | 66.667 | 0.28 | 0.00 | 44.31 | 5.18 |
394 | 401 | 0.528466 | CTCCATCGTGTCACGGGATG | 60.528 | 60.000 | 24.33 | 19.78 | 42.81 | 3.51 |
474 | 628 | 2.673368 | GAGTCCATCGTGTTGAATGGTC | 59.327 | 50.000 | 1.62 | 0.00 | 35.74 | 4.02 |
493 | 647 | 0.363512 | CACGTTGCACTTCGATCGAG | 59.636 | 55.000 | 18.54 | 14.40 | 0.00 | 4.04 |
543 | 800 | 1.933853 | GTTATGTGTGTCCATCGAGCC | 59.066 | 52.381 | 0.00 | 0.00 | 0.00 | 4.70 |
590 | 848 | 1.757118 | TGCAGGCAGATGTAGGAGTAC | 59.243 | 52.381 | 0.00 | 0.00 | 0.00 | 2.73 |
593 | 851 | 0.538584 | TGTGCAGGCAGATGTAGGAG | 59.461 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
594 | 852 | 1.134310 | CATGTGCAGGCAGATGTAGGA | 60.134 | 52.381 | 19.76 | 0.00 | 41.14 | 2.94 |
595 | 853 | 1.306148 | CATGTGCAGGCAGATGTAGG | 58.694 | 55.000 | 19.76 | 0.00 | 41.14 | 3.18 |
618 | 876 | 2.297701 | TGTGTGAACTTTTCTGGCTCC | 58.702 | 47.619 | 0.00 | 0.00 | 0.00 | 4.70 |
619 | 877 | 4.370364 | TTTGTGTGAACTTTTCTGGCTC | 57.630 | 40.909 | 0.00 | 0.00 | 0.00 | 4.70 |
620 | 878 | 4.799564 | TTTTGTGTGAACTTTTCTGGCT | 57.200 | 36.364 | 0.00 | 0.00 | 0.00 | 4.75 |
621 | 879 | 6.313658 | AGAAATTTTGTGTGAACTTTTCTGGC | 59.686 | 34.615 | 0.00 | 0.00 | 32.41 | 4.85 |
707 | 983 | 5.357314 | GGCCTTCTTACTACCATTTTCTTCC | 59.643 | 44.000 | 0.00 | 0.00 | 0.00 | 3.46 |
750 | 1026 | 2.119801 | ACCTTGACTTGGCTGCTATG | 57.880 | 50.000 | 0.00 | 0.00 | 0.00 | 2.23 |
751 | 1027 | 2.716217 | GAACCTTGACTTGGCTGCTAT | 58.284 | 47.619 | 0.00 | 0.00 | 0.00 | 2.97 |
790 | 1083 | 5.003804 | TGCTTGGGTTTCTTTCTAGATGTC | 58.996 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
824 | 1118 | 1.401552 | CTGGTGTCAAGTTGGTGTGTG | 59.598 | 52.381 | 2.34 | 0.00 | 0.00 | 3.82 |
825 | 1119 | 1.750193 | CTGGTGTCAAGTTGGTGTGT | 58.250 | 50.000 | 2.34 | 0.00 | 0.00 | 3.72 |
826 | 1120 | 0.381801 | GCTGGTGTCAAGTTGGTGTG | 59.618 | 55.000 | 2.34 | 0.00 | 0.00 | 3.82 |
827 | 1121 | 0.751643 | GGCTGGTGTCAAGTTGGTGT | 60.752 | 55.000 | 2.34 | 0.00 | 0.00 | 4.16 |
852 | 1150 | 4.761975 | TGTGATCGGGTCCAAGTTTATAC | 58.238 | 43.478 | 0.00 | 0.00 | 0.00 | 1.47 |
874 | 1172 | 2.695666 | CCGATGTAGTGGGAGTTGAGAT | 59.304 | 50.000 | 0.00 | 0.00 | 0.00 | 2.75 |
875 | 1173 | 2.100197 | CCGATGTAGTGGGAGTTGAGA | 58.900 | 52.381 | 0.00 | 0.00 | 0.00 | 3.27 |
902 | 1200 | 6.751888 | ACTGGTTTCAAGAAAGAAAATGTTCG | 59.248 | 34.615 | 0.00 | 0.00 | 39.05 | 3.95 |
919 | 1217 | 1.734465 | CTCGCAGGATGAACTGGTTTC | 59.266 | 52.381 | 0.00 | 0.00 | 39.69 | 2.78 |
969 | 1267 | 4.163458 | TCACCTGACTGGAGTAGTTGTTTT | 59.837 | 41.667 | 5.22 | 0.00 | 40.53 | 2.43 |
972 | 1270 | 2.958818 | TCACCTGACTGGAGTAGTTGT | 58.041 | 47.619 | 5.22 | 0.00 | 40.53 | 3.32 |
975 | 1281 | 3.074687 | TCTCTTCACCTGACTGGAGTAGT | 59.925 | 47.826 | 5.22 | 0.00 | 44.02 | 2.73 |
976 | 1282 | 3.691575 | TCTCTTCACCTGACTGGAGTAG | 58.308 | 50.000 | 5.22 | 0.99 | 39.71 | 2.57 |
977 | 1283 | 3.691575 | CTCTCTTCACCTGACTGGAGTA | 58.308 | 50.000 | 5.22 | 0.00 | 39.71 | 2.59 |
978 | 1284 | 2.524306 | CTCTCTTCACCTGACTGGAGT | 58.476 | 52.381 | 5.22 | 0.00 | 39.71 | 3.85 |
1152 | 1464 | 4.069232 | CGCCGAGGTGCCTTCAGA | 62.069 | 66.667 | 0.00 | 0.00 | 0.00 | 3.27 |
1156 | 1468 | 4.394712 | CTTCCGCCGAGGTGCCTT | 62.395 | 66.667 | 0.00 | 0.00 | 41.99 | 4.35 |
1158 | 1470 | 4.821589 | CTCTTCCGCCGAGGTGCC | 62.822 | 72.222 | 0.00 | 0.00 | 41.99 | 5.01 |
1164 | 1476 | 4.069232 | CTGTGCCTCTTCCGCCGA | 62.069 | 66.667 | 0.00 | 0.00 | 0.00 | 5.54 |
1733 | 2045 | 0.879765 | CTTGAGCTTGAAGGTGCAGG | 59.120 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1757 | 2069 | 4.096081 | ACGGTTTGAGAACGATCTACCTAG | 59.904 | 45.833 | 10.36 | 0.85 | 35.54 | 3.02 |
1759 | 2071 | 2.824341 | ACGGTTTGAGAACGATCTACCT | 59.176 | 45.455 | 10.36 | 0.00 | 35.54 | 3.08 |
1760 | 2072 | 3.227810 | ACGGTTTGAGAACGATCTACC | 57.772 | 47.619 | 0.00 | 0.00 | 35.54 | 3.18 |
1761 | 2073 | 4.682860 | TCAAACGGTTTGAGAACGATCTAC | 59.317 | 41.667 | 27.49 | 0.00 | 44.21 | 2.59 |
1818 | 2130 | 6.559429 | ACCTCGGTAATTATCCTACCTACAT | 58.441 | 40.000 | 0.00 | 0.00 | 37.29 | 2.29 |
1823 | 2135 | 5.641783 | GAGACCTCGGTAATTATCCTACC | 57.358 | 47.826 | 0.00 | 0.00 | 36.27 | 3.18 |
1852 | 2164 | 6.820335 | TCAATCAACATAGATCGACAGGAAT | 58.180 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1868 | 2180 | 2.473816 | TGCCGATCGATCTCAATCAAC | 58.526 | 47.619 | 22.43 | 4.33 | 31.76 | 3.18 |
1958 | 2274 | 7.866393 | CGAATACACCTCGGATCTTATTTACTT | 59.134 | 37.037 | 0.00 | 0.00 | 32.62 | 2.24 |
1960 | 2276 | 7.144000 | ACGAATACACCTCGGATCTTATTTAC | 58.856 | 38.462 | 0.00 | 0.00 | 40.64 | 2.01 |
1984 | 2300 | 4.024048 | TCTCCAAAGAAACTCATCGCAAAC | 60.024 | 41.667 | 0.00 | 0.00 | 0.00 | 2.93 |
2040 | 2357 | 1.094785 | AAACCACGCATATGGACTGC | 58.905 | 50.000 | 4.56 | 0.00 | 43.02 | 4.40 |
2081 | 3196 | 1.831286 | GATTCTCGACCCCCGCCTA | 60.831 | 63.158 | 0.00 | 0.00 | 38.37 | 3.93 |
2085 | 3200 | 0.179108 | GAACTGATTCTCGACCCCCG | 60.179 | 60.000 | 0.00 | 0.00 | 40.25 | 5.73 |
2119 | 3237 | 2.840038 | TGTGCTCTCCATTATGACCAGT | 59.160 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
2120 | 3238 | 3.548745 | TGTGCTCTCCATTATGACCAG | 57.451 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
2121 | 3239 | 3.455543 | TCATGTGCTCTCCATTATGACCA | 59.544 | 43.478 | 0.00 | 0.00 | 30.11 | 4.02 |
2122 | 3240 | 3.812053 | GTCATGTGCTCTCCATTATGACC | 59.188 | 47.826 | 0.00 | 0.00 | 40.84 | 4.02 |
2123 | 3241 | 4.272018 | GTGTCATGTGCTCTCCATTATGAC | 59.728 | 45.833 | 0.00 | 0.00 | 43.61 | 3.06 |
2124 | 3242 | 4.162888 | AGTGTCATGTGCTCTCCATTATGA | 59.837 | 41.667 | 0.00 | 0.00 | 31.59 | 2.15 |
2125 | 3243 | 4.272748 | CAGTGTCATGTGCTCTCCATTATG | 59.727 | 45.833 | 0.00 | 0.00 | 0.00 | 1.90 |
2126 | 3244 | 4.449131 | CAGTGTCATGTGCTCTCCATTAT | 58.551 | 43.478 | 0.00 | 0.00 | 0.00 | 1.28 |
2127 | 3245 | 3.369787 | CCAGTGTCATGTGCTCTCCATTA | 60.370 | 47.826 | 0.00 | 0.00 | 0.00 | 1.90 |
2128 | 3246 | 2.617276 | CCAGTGTCATGTGCTCTCCATT | 60.617 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2129 | 3247 | 1.065636 | CCAGTGTCATGTGCTCTCCAT | 60.066 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
2130 | 3248 | 0.322648 | CCAGTGTCATGTGCTCTCCA | 59.677 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2131 | 3249 | 0.322975 | ACCAGTGTCATGTGCTCTCC | 59.677 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
2132 | 3250 | 2.232452 | ACTACCAGTGTCATGTGCTCTC | 59.768 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
2133 | 3251 | 2.232452 | GACTACCAGTGTCATGTGCTCT | 59.768 | 50.000 | 0.00 | 0.00 | 34.80 | 4.09 |
2134 | 3252 | 2.232452 | AGACTACCAGTGTCATGTGCTC | 59.768 | 50.000 | 0.00 | 0.00 | 36.94 | 4.26 |
2135 | 3253 | 2.251818 | AGACTACCAGTGTCATGTGCT | 58.748 | 47.619 | 0.00 | 0.00 | 36.94 | 4.40 |
2136 | 3254 | 2.751166 | AGACTACCAGTGTCATGTGC | 57.249 | 50.000 | 0.00 | 0.00 | 36.94 | 4.57 |
2137 | 3255 | 5.392767 | ACTTAGACTACCAGTGTCATGTG | 57.607 | 43.478 | 0.00 | 0.00 | 36.94 | 3.21 |
2138 | 3256 | 6.420913 | AAACTTAGACTACCAGTGTCATGT | 57.579 | 37.500 | 0.00 | 0.00 | 36.94 | 3.21 |
2139 | 3257 | 6.812160 | GGTAAACTTAGACTACCAGTGTCATG | 59.188 | 42.308 | 8.77 | 0.00 | 36.00 | 3.07 |
2140 | 3258 | 6.495872 | TGGTAAACTTAGACTACCAGTGTCAT | 59.504 | 38.462 | 11.25 | 0.00 | 40.09 | 3.06 |
2141 | 3259 | 5.834742 | TGGTAAACTTAGACTACCAGTGTCA | 59.165 | 40.000 | 11.25 | 0.00 | 40.09 | 3.58 |
2142 | 3260 | 6.336842 | TGGTAAACTTAGACTACCAGTGTC | 57.663 | 41.667 | 11.25 | 0.00 | 40.09 | 3.67 |
2143 | 3261 | 6.724905 | AGATGGTAAACTTAGACTACCAGTGT | 59.275 | 38.462 | 17.24 | 6.26 | 46.21 | 3.55 |
2144 | 3262 | 7.171630 | AGATGGTAAACTTAGACTACCAGTG | 57.828 | 40.000 | 17.24 | 0.00 | 46.21 | 3.66 |
2145 | 3263 | 7.793948 | AAGATGGTAAACTTAGACTACCAGT | 57.206 | 36.000 | 17.24 | 8.67 | 46.21 | 4.00 |
2151 | 3269 | 9.819267 | GCACTATAAAGATGGTAAACTTAGACT | 57.181 | 33.333 | 0.00 | 0.00 | 0.00 | 3.24 |
2152 | 3270 | 9.595823 | TGCACTATAAAGATGGTAAACTTAGAC | 57.404 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
2156 | 3274 | 8.739972 | CCTTTGCACTATAAAGATGGTAAACTT | 58.260 | 33.333 | 0.00 | 0.00 | 37.33 | 2.66 |
2157 | 3275 | 8.107095 | TCCTTTGCACTATAAAGATGGTAAACT | 58.893 | 33.333 | 0.00 | 0.00 | 37.33 | 2.66 |
2158 | 3276 | 8.276252 | TCCTTTGCACTATAAAGATGGTAAAC | 57.724 | 34.615 | 0.00 | 0.00 | 37.33 | 2.01 |
2159 | 3277 | 8.736244 | GTTCCTTTGCACTATAAAGATGGTAAA | 58.264 | 33.333 | 0.00 | 0.00 | 37.33 | 2.01 |
2160 | 3278 | 7.885922 | TGTTCCTTTGCACTATAAAGATGGTAA | 59.114 | 33.333 | 0.00 | 0.00 | 37.33 | 2.85 |
2161 | 3279 | 7.398829 | TGTTCCTTTGCACTATAAAGATGGTA | 58.601 | 34.615 | 0.00 | 0.00 | 37.33 | 3.25 |
2162 | 3280 | 6.245408 | TGTTCCTTTGCACTATAAAGATGGT | 58.755 | 36.000 | 0.00 | 0.00 | 37.33 | 3.55 |
2163 | 3281 | 6.757897 | TGTTCCTTTGCACTATAAAGATGG | 57.242 | 37.500 | 0.00 | 0.00 | 37.33 | 3.51 |
2168 | 3286 | 9.860650 | ACCATATATGTTCCTTTGCACTATAAA | 57.139 | 29.630 | 11.73 | 0.00 | 0.00 | 1.40 |
2169 | 3287 | 9.860650 | AACCATATATGTTCCTTTGCACTATAA | 57.139 | 29.630 | 11.73 | 0.00 | 0.00 | 0.98 |
2170 | 3288 | 9.283768 | CAACCATATATGTTCCTTTGCACTATA | 57.716 | 33.333 | 11.73 | 0.00 | 0.00 | 1.31 |
2171 | 3289 | 7.255590 | GCAACCATATATGTTCCTTTGCACTAT | 60.256 | 37.037 | 18.61 | 0.00 | 38.36 | 2.12 |
2172 | 3290 | 6.039270 | GCAACCATATATGTTCCTTTGCACTA | 59.961 | 38.462 | 18.61 | 0.00 | 38.36 | 2.74 |
2173 | 3291 | 5.163519 | GCAACCATATATGTTCCTTTGCACT | 60.164 | 40.000 | 18.61 | 0.00 | 38.36 | 4.40 |
2174 | 3292 | 5.043248 | GCAACCATATATGTTCCTTTGCAC | 58.957 | 41.667 | 18.61 | 0.00 | 38.36 | 4.57 |
2175 | 3293 | 4.708909 | TGCAACCATATATGTTCCTTTGCA | 59.291 | 37.500 | 20.53 | 20.53 | 44.23 | 4.08 |
2176 | 3294 | 5.261209 | TGCAACCATATATGTTCCTTTGC | 57.739 | 39.130 | 11.73 | 15.44 | 38.83 | 3.68 |
2177 | 3295 | 9.985730 | ATAAATGCAACCATATATGTTCCTTTG | 57.014 | 29.630 | 11.73 | 7.61 | 0.00 | 2.77 |
2181 | 3299 | 9.573133 | GCTAATAAATGCAACCATATATGTTCC | 57.427 | 33.333 | 11.73 | 0.00 | 0.00 | 3.62 |
2188 | 3306 | 9.573166 | TCTACAAGCTAATAAATGCAACCATAT | 57.427 | 29.630 | 0.00 | 0.00 | 0.00 | 1.78 |
2189 | 3307 | 8.836413 | GTCTACAAGCTAATAAATGCAACCATA | 58.164 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
2190 | 3308 | 7.557719 | AGTCTACAAGCTAATAAATGCAACCAT | 59.442 | 33.333 | 0.00 | 0.00 | 0.00 | 3.55 |
2191 | 3309 | 6.884295 | AGTCTACAAGCTAATAAATGCAACCA | 59.116 | 34.615 | 0.00 | 0.00 | 0.00 | 3.67 |
2192 | 3310 | 7.065803 | TGAGTCTACAAGCTAATAAATGCAACC | 59.934 | 37.037 | 0.00 | 0.00 | 0.00 | 3.77 |
2193 | 3311 | 7.974675 | TGAGTCTACAAGCTAATAAATGCAAC | 58.025 | 34.615 | 0.00 | 0.00 | 0.00 | 4.17 |
2194 | 3312 | 8.450964 | GTTGAGTCTACAAGCTAATAAATGCAA | 58.549 | 33.333 | 0.00 | 0.00 | 0.00 | 4.08 |
2195 | 3313 | 7.824289 | AGTTGAGTCTACAAGCTAATAAATGCA | 59.176 | 33.333 | 7.47 | 0.00 | 0.00 | 3.96 |
2196 | 3314 | 8.202745 | AGTTGAGTCTACAAGCTAATAAATGC | 57.797 | 34.615 | 7.47 | 0.00 | 0.00 | 3.56 |
2223 | 3341 | 3.717400 | TCACATAGCGTTTGCCAAAAA | 57.283 | 38.095 | 0.00 | 0.00 | 44.31 | 1.94 |
2224 | 3342 | 3.573598 | CATCACATAGCGTTTGCCAAAA | 58.426 | 40.909 | 0.00 | 0.00 | 44.31 | 2.44 |
2225 | 3343 | 2.094803 | CCATCACATAGCGTTTGCCAAA | 60.095 | 45.455 | 0.00 | 0.00 | 44.31 | 3.28 |
2226 | 3344 | 1.472082 | CCATCACATAGCGTTTGCCAA | 59.528 | 47.619 | 0.00 | 0.00 | 44.31 | 4.52 |
2227 | 3345 | 1.093972 | CCATCACATAGCGTTTGCCA | 58.906 | 50.000 | 0.00 | 0.00 | 44.31 | 4.92 |
2228 | 3346 | 1.094785 | ACCATCACATAGCGTTTGCC | 58.905 | 50.000 | 0.00 | 0.00 | 44.31 | 4.52 |
2229 | 3347 | 3.126171 | TGTTACCATCACATAGCGTTTGC | 59.874 | 43.478 | 0.00 | 0.00 | 43.24 | 3.68 |
2230 | 3348 | 4.937696 | TGTTACCATCACATAGCGTTTG | 57.062 | 40.909 | 0.00 | 0.00 | 0.00 | 2.93 |
2231 | 3349 | 7.801716 | ATTATGTTACCATCACATAGCGTTT | 57.198 | 32.000 | 0.00 | 0.00 | 38.16 | 3.60 |
2232 | 3350 | 8.896320 | TTATTATGTTACCATCACATAGCGTT | 57.104 | 30.769 | 0.00 | 0.00 | 38.16 | 4.84 |
2233 | 3351 | 8.148351 | ACTTATTATGTTACCATCACATAGCGT | 58.852 | 33.333 | 0.00 | 0.00 | 38.16 | 5.07 |
2234 | 3352 | 8.534333 | ACTTATTATGTTACCATCACATAGCG | 57.466 | 34.615 | 0.00 | 0.00 | 38.16 | 4.26 |
2239 | 3357 | 9.826574 | GGAGTAACTTATTATGTTACCATCACA | 57.173 | 33.333 | 20.54 | 0.00 | 46.31 | 3.58 |
2240 | 3358 | 9.826574 | TGGAGTAACTTATTATGTTACCATCAC | 57.173 | 33.333 | 20.54 | 11.90 | 46.31 | 3.06 |
2248 | 3366 | 9.227777 | GAGGTGTTTGGAGTAACTTATTATGTT | 57.772 | 33.333 | 1.21 | 1.21 | 0.00 | 2.71 |
2249 | 3367 | 8.603304 | AGAGGTGTTTGGAGTAACTTATTATGT | 58.397 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
2250 | 3368 | 9.099454 | GAGAGGTGTTTGGAGTAACTTATTATG | 57.901 | 37.037 | 0.00 | 0.00 | 0.00 | 1.90 |
2251 | 3369 | 9.047947 | AGAGAGGTGTTTGGAGTAACTTATTAT | 57.952 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
2252 | 3370 | 8.431910 | AGAGAGGTGTTTGGAGTAACTTATTA | 57.568 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
2253 | 3371 | 7.317722 | AGAGAGGTGTTTGGAGTAACTTATT | 57.682 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2254 | 3372 | 6.936968 | AGAGAGGTGTTTGGAGTAACTTAT | 57.063 | 37.500 | 0.00 | 0.00 | 0.00 | 1.73 |
2255 | 3373 | 6.742559 | AAGAGAGGTGTTTGGAGTAACTTA | 57.257 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
2256 | 3374 | 5.632034 | AAGAGAGGTGTTTGGAGTAACTT | 57.368 | 39.130 | 0.00 | 0.00 | 0.00 | 2.66 |
2257 | 3375 | 5.632034 | AAAGAGAGGTGTTTGGAGTAACT | 57.368 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
2258 | 3376 | 6.694877 | AAAAAGAGAGGTGTTTGGAGTAAC | 57.305 | 37.500 | 0.00 | 0.00 | 0.00 | 2.50 |
2259 | 3377 | 8.990163 | AATAAAAAGAGAGGTGTTTGGAGTAA | 57.010 | 30.769 | 0.00 | 0.00 | 0.00 | 2.24 |
2261 | 3379 | 8.990163 | TTAATAAAAAGAGAGGTGTTTGGAGT | 57.010 | 30.769 | 0.00 | 0.00 | 0.00 | 3.85 |
2268 | 3386 | 8.678199 | GCAGCTAATTAATAAAAAGAGAGGTGT | 58.322 | 33.333 | 0.00 | 0.00 | 33.57 | 4.16 |
2269 | 3387 | 8.131731 | GGCAGCTAATTAATAAAAAGAGAGGTG | 58.868 | 37.037 | 0.00 | 0.00 | 34.03 | 4.00 |
2270 | 3388 | 7.834181 | TGGCAGCTAATTAATAAAAAGAGAGGT | 59.166 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
2271 | 3389 | 8.131731 | GTGGCAGCTAATTAATAAAAAGAGAGG | 58.868 | 37.037 | 0.00 | 0.00 | 0.00 | 3.69 |
2272 | 3390 | 8.677300 | TGTGGCAGCTAATTAATAAAAAGAGAG | 58.323 | 33.333 | 0.00 | 0.00 | 0.00 | 3.20 |
2273 | 3391 | 8.574251 | TGTGGCAGCTAATTAATAAAAAGAGA | 57.426 | 30.769 | 0.00 | 0.00 | 0.00 | 3.10 |
2277 | 3395 | 9.528018 | GCTTATGTGGCAGCTAATTAATAAAAA | 57.472 | 29.630 | 0.00 | 0.00 | 32.87 | 1.94 |
2278 | 3396 | 8.690884 | TGCTTATGTGGCAGCTAATTAATAAAA | 58.309 | 29.630 | 0.00 | 0.00 | 36.92 | 1.52 |
2279 | 3397 | 8.231692 | TGCTTATGTGGCAGCTAATTAATAAA | 57.768 | 30.769 | 0.00 | 0.00 | 36.92 | 1.40 |
2280 | 3398 | 7.815840 | TGCTTATGTGGCAGCTAATTAATAA | 57.184 | 32.000 | 0.00 | 0.00 | 36.92 | 1.40 |
2281 | 3399 | 7.815840 | TTGCTTATGTGGCAGCTAATTAATA | 57.184 | 32.000 | 0.00 | 0.00 | 40.90 | 0.98 |
2282 | 3400 | 6.713762 | TTGCTTATGTGGCAGCTAATTAAT | 57.286 | 33.333 | 0.00 | 0.00 | 40.90 | 1.40 |
2283 | 3401 | 6.152661 | AGTTTGCTTATGTGGCAGCTAATTAA | 59.847 | 34.615 | 0.00 | 0.00 | 40.90 | 1.40 |
2284 | 3402 | 5.652014 | AGTTTGCTTATGTGGCAGCTAATTA | 59.348 | 36.000 | 0.00 | 0.00 | 40.90 | 1.40 |
2285 | 3403 | 4.463891 | AGTTTGCTTATGTGGCAGCTAATT | 59.536 | 37.500 | 0.00 | 0.00 | 40.90 | 1.40 |
2286 | 3404 | 4.019174 | AGTTTGCTTATGTGGCAGCTAAT | 58.981 | 39.130 | 0.00 | 0.00 | 40.90 | 1.73 |
2287 | 3405 | 3.420893 | AGTTTGCTTATGTGGCAGCTAA | 58.579 | 40.909 | 0.00 | 0.00 | 40.90 | 3.09 |
2288 | 3406 | 3.071874 | AGTTTGCTTATGTGGCAGCTA | 57.928 | 42.857 | 0.00 | 0.00 | 40.90 | 3.32 |
2289 | 3407 | 1.915141 | AGTTTGCTTATGTGGCAGCT | 58.085 | 45.000 | 0.00 | 0.00 | 40.90 | 4.24 |
2290 | 3408 | 2.288395 | ACAAGTTTGCTTATGTGGCAGC | 60.288 | 45.455 | 0.00 | 0.00 | 40.90 | 5.25 |
2291 | 3409 | 3.254166 | AGACAAGTTTGCTTATGTGGCAG | 59.746 | 43.478 | 0.00 | 0.00 | 40.90 | 4.85 |
2292 | 3410 | 3.221771 | AGACAAGTTTGCTTATGTGGCA | 58.778 | 40.909 | 0.00 | 0.00 | 37.97 | 4.92 |
2293 | 3411 | 3.667960 | CGAGACAAGTTTGCTTATGTGGC | 60.668 | 47.826 | 0.00 | 0.00 | 32.87 | 5.01 |
2294 | 3412 | 3.120199 | CCGAGACAAGTTTGCTTATGTGG | 60.120 | 47.826 | 0.00 | 0.00 | 32.87 | 4.17 |
2295 | 3413 | 3.120199 | CCCGAGACAAGTTTGCTTATGTG | 60.120 | 47.826 | 0.00 | 0.00 | 32.87 | 3.21 |
2296 | 3414 | 3.074412 | CCCGAGACAAGTTTGCTTATGT | 58.926 | 45.455 | 0.00 | 0.00 | 32.87 | 2.29 |
2297 | 3415 | 3.334691 | TCCCGAGACAAGTTTGCTTATG | 58.665 | 45.455 | 0.00 | 0.00 | 32.87 | 1.90 |
2298 | 3416 | 3.695830 | TCCCGAGACAAGTTTGCTTAT | 57.304 | 42.857 | 0.00 | 0.00 | 32.87 | 1.73 |
2299 | 3417 | 3.695830 | ATCCCGAGACAAGTTTGCTTA | 57.304 | 42.857 | 0.00 | 0.00 | 32.87 | 3.09 |
2300 | 3418 | 2.568623 | ATCCCGAGACAAGTTTGCTT | 57.431 | 45.000 | 0.00 | 0.00 | 34.82 | 3.91 |
2301 | 3419 | 3.055094 | ACATATCCCGAGACAAGTTTGCT | 60.055 | 43.478 | 0.00 | 0.00 | 0.00 | 3.91 |
2302 | 3420 | 3.270877 | ACATATCCCGAGACAAGTTTGC | 58.729 | 45.455 | 0.00 | 0.00 | 0.00 | 3.68 |
2303 | 3421 | 6.538742 | ACATAACATATCCCGAGACAAGTTTG | 59.461 | 38.462 | 0.00 | 0.00 | 0.00 | 2.93 |
2304 | 3422 | 6.650120 | ACATAACATATCCCGAGACAAGTTT | 58.350 | 36.000 | 0.00 | 0.00 | 0.00 | 2.66 |
2305 | 3423 | 6.235231 | ACATAACATATCCCGAGACAAGTT | 57.765 | 37.500 | 0.00 | 0.00 | 0.00 | 2.66 |
2306 | 3424 | 5.871396 | ACATAACATATCCCGAGACAAGT | 57.129 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
2307 | 3425 | 7.434492 | AGTAACATAACATATCCCGAGACAAG | 58.566 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
2308 | 3426 | 7.356089 | AGTAACATAACATATCCCGAGACAA | 57.644 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2309 | 3427 | 6.971726 | AGTAACATAACATATCCCGAGACA | 57.028 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
2310 | 3428 | 8.574737 | AGTAAGTAACATAACATATCCCGAGAC | 58.425 | 37.037 | 0.00 | 0.00 | 0.00 | 3.36 |
2311 | 3429 | 8.701908 | AGTAAGTAACATAACATATCCCGAGA | 57.298 | 34.615 | 0.00 | 0.00 | 0.00 | 4.04 |
2333 | 3451 | 8.591072 | GCTGGTTATAGTGGGAATAACATAGTA | 58.409 | 37.037 | 7.92 | 0.00 | 40.19 | 1.82 |
2334 | 3452 | 7.450903 | GCTGGTTATAGTGGGAATAACATAGT | 58.549 | 38.462 | 7.92 | 0.00 | 40.19 | 2.12 |
2335 | 3453 | 6.879458 | GGCTGGTTATAGTGGGAATAACATAG | 59.121 | 42.308 | 7.92 | 6.68 | 40.19 | 2.23 |
2336 | 3454 | 6.561070 | AGGCTGGTTATAGTGGGAATAACATA | 59.439 | 38.462 | 7.92 | 0.00 | 40.19 | 2.29 |
2337 | 3455 | 5.372661 | AGGCTGGTTATAGTGGGAATAACAT | 59.627 | 40.000 | 7.92 | 0.00 | 40.19 | 2.71 |
2338 | 3456 | 4.724798 | AGGCTGGTTATAGTGGGAATAACA | 59.275 | 41.667 | 7.92 | 0.00 | 40.19 | 2.41 |
2339 | 3457 | 5.306114 | AGGCTGGTTATAGTGGGAATAAC | 57.694 | 43.478 | 0.00 | 0.00 | 38.52 | 1.89 |
2340 | 3458 | 5.987019 | AAGGCTGGTTATAGTGGGAATAA | 57.013 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
2341 | 3459 | 6.790461 | TCATAAGGCTGGTTATAGTGGGAATA | 59.210 | 38.462 | 0.00 | 0.00 | 0.00 | 1.75 |
2342 | 3460 | 5.610982 | TCATAAGGCTGGTTATAGTGGGAAT | 59.389 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2343 | 3461 | 4.972568 | TCATAAGGCTGGTTATAGTGGGAA | 59.027 | 41.667 | 0.00 | 0.00 | 0.00 | 3.97 |
2344 | 3462 | 4.562767 | TCATAAGGCTGGTTATAGTGGGA | 58.437 | 43.478 | 0.00 | 0.00 | 0.00 | 4.37 |
2345 | 3463 | 4.348168 | ACTCATAAGGCTGGTTATAGTGGG | 59.652 | 45.833 | 0.00 | 0.00 | 0.00 | 4.61 |
2346 | 3464 | 5.552870 | ACTCATAAGGCTGGTTATAGTGG | 57.447 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
2347 | 3465 | 7.171678 | GCTTAACTCATAAGGCTGGTTATAGTG | 59.828 | 40.741 | 0.00 | 0.00 | 41.19 | 2.74 |
2348 | 3466 | 7.217906 | GCTTAACTCATAAGGCTGGTTATAGT | 58.782 | 38.462 | 0.00 | 0.00 | 41.19 | 2.12 |
2349 | 3467 | 7.659652 | GCTTAACTCATAAGGCTGGTTATAG | 57.340 | 40.000 | 0.00 | 0.00 | 41.19 | 1.31 |
2359 | 3477 | 1.940613 | GGTGCGGCTTAACTCATAAGG | 59.059 | 52.381 | 0.00 | 0.00 | 41.19 | 2.69 |
2360 | 3478 | 2.906354 | AGGTGCGGCTTAACTCATAAG | 58.094 | 47.619 | 0.00 | 0.00 | 43.32 | 1.73 |
2361 | 3479 | 4.502604 | GGATAGGTGCGGCTTAACTCATAA | 60.503 | 45.833 | 0.00 | 0.00 | 0.00 | 1.90 |
2362 | 3480 | 3.006537 | GGATAGGTGCGGCTTAACTCATA | 59.993 | 47.826 | 0.00 | 0.00 | 0.00 | 2.15 |
2363 | 3481 | 2.224305 | GGATAGGTGCGGCTTAACTCAT | 60.224 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2364 | 3482 | 1.138266 | GGATAGGTGCGGCTTAACTCA | 59.862 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
2365 | 3483 | 1.138266 | TGGATAGGTGCGGCTTAACTC | 59.862 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
2382 | 3500 | 3.157087 | GGAGCAGTTGAAGGAATTTGGA | 58.843 | 45.455 | 0.00 | 0.00 | 0.00 | 3.53 |
2445 | 3563 | 1.810031 | GCAAAGAACTTGTTTGGGGGC | 60.810 | 52.381 | 12.07 | 0.00 | 37.36 | 5.80 |
2462 | 3580 | 3.233507 | AGCTGAAGGGATCTTTTTGCAA | 58.766 | 40.909 | 0.00 | 0.00 | 32.52 | 4.08 |
2487 | 3606 | 1.478916 | GAGTGAGAGGTAGCAGGAACC | 59.521 | 57.143 | 0.00 | 0.00 | 37.27 | 3.62 |
2488 | 3607 | 1.133407 | CGAGTGAGAGGTAGCAGGAAC | 59.867 | 57.143 | 0.00 | 0.00 | 0.00 | 3.62 |
2489 | 3608 | 1.004394 | TCGAGTGAGAGGTAGCAGGAA | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
2493 | 3617 | 0.036671 | TCGTCGAGTGAGAGGTAGCA | 60.037 | 55.000 | 0.00 | 0.00 | 0.00 | 3.49 |
2538 | 3662 | 5.283060 | AGTCGTTGAGGAAAATGAAATCG | 57.717 | 39.130 | 0.00 | 0.00 | 0.00 | 3.34 |
2545 | 3669 | 3.746492 | GCACAGTAGTCGTTGAGGAAAAT | 59.254 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
2549 | 3673 | 1.000607 | GTGCACAGTAGTCGTTGAGGA | 60.001 | 52.381 | 13.17 | 0.00 | 0.00 | 3.71 |
2555 | 3679 | 2.049433 | GGCGTGCACAGTAGTCGT | 60.049 | 61.111 | 18.64 | 0.00 | 0.00 | 4.34 |
2594 | 3718 | 2.356793 | CCGAGAGATCGGCATGGC | 60.357 | 66.667 | 9.69 | 9.69 | 46.76 | 4.40 |
2643 | 3768 | 1.037493 | TATGCGGCGATTCCAGTAGT | 58.963 | 50.000 | 12.98 | 0.00 | 34.01 | 2.73 |
2646 | 3771 | 0.681733 | AGATATGCGGCGATTCCAGT | 59.318 | 50.000 | 12.98 | 0.00 | 34.01 | 4.00 |
2680 | 3805 | 1.001641 | GTCCACAAGCTCCAGGCAT | 60.002 | 57.895 | 0.00 | 0.00 | 44.79 | 4.40 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.