Multiple sequence alignment - TraesCS2B01G590300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G590300 chr2B 100.000 4213 0 0 1 4213 776456822 776452610 0.000000e+00 7781.0
1 TraesCS2B01G590300 chr2B 93.844 3590 137 17 656 4212 786954932 786951394 0.000000e+00 5328.0
2 TraesCS2B01G590300 chr2B 93.810 3554 134 24 656 4175 786911827 786908326 0.000000e+00 5265.0
3 TraesCS2B01G590300 chr2B 94.636 988 46 6 2911 3895 786888593 786887610 0.000000e+00 1524.0
4 TraesCS2B01G590300 chr2B 83.749 1243 147 28 845 2060 776658132 776656918 0.000000e+00 1125.0
5 TraesCS2B01G590300 chr2B 85.754 1067 129 11 998 2060 776638809 776637762 0.000000e+00 1107.0
6 TraesCS2B01G590300 chr2B 85.380 1067 133 12 998 2060 776418992 776420039 0.000000e+00 1085.0
7 TraesCS2B01G590300 chr2B 85.034 1029 130 12 1036 2060 776599186 776598178 0.000000e+00 1026.0
8 TraesCS2B01G590300 chr2B 84.257 1029 137 13 1036 2060 776610292 776609285 0.000000e+00 979.0
9 TraesCS2B01G590300 chr2B 95.130 616 27 3 2911 3525 786901916 786901303 0.000000e+00 968.0
10 TraesCS2B01G590300 chr2B 93.478 460 27 2 3439 3895 786945847 786945388 0.000000e+00 680.0
11 TraesCS2B01G590300 chr2B 85.737 617 67 12 994 1605 776414159 776414759 2.140000e-177 632.0
12 TraesCS2B01G590300 chr2B 96.904 323 10 0 2911 3233 786946178 786945856 3.710000e-150 542.0
13 TraesCS2B01G590300 chr2B 96.743 307 9 1 3906 4212 786938022 786937717 1.040000e-140 510.0
14 TraesCS2B01G590300 chr2B 96.429 308 9 2 3906 4212 786894182 786893876 1.350000e-139 507.0
15 TraesCS2B01G590300 chr2B 76.780 969 164 39 2088 3012 776420037 776420988 1.760000e-133 486.0
16 TraesCS2B01G590300 chr2B 93.789 322 17 2 3577 3895 786901305 786900984 8.190000e-132 481.0
17 TraesCS2B01G590300 chr2B 81.095 566 83 14 2088 2638 776609287 776608731 8.370000e-117 431.0
18 TraesCS2B01G590300 chr2B 80.742 566 85 14 2088 2638 776598180 776597624 1.810000e-113 420.0
19 TraesCS2B01G590300 chr2B 82.069 145 23 3 3885 4028 26995701 26995843 2.060000e-23 121.0
20 TraesCS2B01G590300 chr2B 97.368 38 1 0 4175 4212 786887137 786887100 9.780000e-07 65.8
21 TraesCS2B01G590300 chr2A 91.527 3222 181 34 861 4027 759171347 759174531 0.000000e+00 4353.0
22 TraesCS2B01G590300 chr2A 84.371 787 110 10 1275 2060 759295710 759294936 0.000000e+00 760.0
23 TraesCS2B01G590300 chr2A 84.337 166 6 7 703 868 759170982 759171127 1.220000e-30 145.0
24 TraesCS2B01G590300 chr2A 96.053 76 2 1 4135 4209 759174520 759174595 5.720000e-24 122.0
25 TraesCS2B01G590300 chr2A 81.944 72 11 2 3188 3258 759150995 759151065 4.550000e-05 60.2
26 TraesCS2B01G590300 chr1B 96.401 639 20 2 1 636 643025163 643025801 0.000000e+00 1050.0
27 TraesCS2B01G590300 chr1B 95.611 638 25 1 1 635 642813082 642813719 0.000000e+00 1020.0
28 TraesCS2B01G590300 chr7B 95.931 639 23 1 1 636 739379507 739380145 0.000000e+00 1033.0
29 TraesCS2B01G590300 chr7B 96.618 621 18 1 1 618 191893350 191892730 0.000000e+00 1027.0
30 TraesCS2B01G590300 chr7B 95.462 639 26 1 1 636 498599559 498598921 0.000000e+00 1016.0
31 TraesCS2B01G590300 chr3B 95.483 642 23 2 1 639 708392551 708391913 0.000000e+00 1020.0
32 TraesCS2B01G590300 chr3B 78.571 210 40 4 2269 2476 13414383 13414589 2.640000e-27 134.0
33 TraesCS2B01G590300 chr6B 95.171 642 28 1 1 639 121524186 121524827 0.000000e+00 1011.0
34 TraesCS2B01G590300 chr6B 95.305 639 27 2 1 636 563975660 563975022 0.000000e+00 1011.0
35 TraesCS2B01G590300 chr4B 95.305 639 27 2 1 636 655017769 655017131 0.000000e+00 1011.0
36 TraesCS2B01G590300 chr3D 79.439 214 32 9 2269 2476 5408665 5408458 1.580000e-29 141.0
37 TraesCS2B01G590300 chr2D 72.368 456 97 15 1889 2319 548632134 548632585 2.660000e-22 117.0
38 TraesCS2B01G590300 chr2D 81.752 137 23 2 1348 1484 514946155 514946289 3.440000e-21 113.0
39 TraesCS2B01G590300 chr2D 81.944 72 11 2 3188 3258 633389283 633389213 4.550000e-05 60.2
40 TraesCS2B01G590300 chr5D 83.838 99 14 1 3931 4029 371835944 371835848 4.490000e-15 93.5
41 TraesCS2B01G590300 chr5D 76.190 147 34 1 3885 4030 273473949 273473803 4.520000e-10 76.8
42 TraesCS2B01G590300 chr6D 81.081 111 21 0 3919 4029 433362645 433362535 5.800000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G590300 chr2B 776452610 776456822 4212 True 7781.0 7781 100.0000 1 4213 1 chr2B.!!$R1 4212
1 TraesCS2B01G590300 chr2B 786951394 786954932 3538 True 5328.0 5328 93.8440 656 4212 1 chr2B.!!$R7 3556
2 TraesCS2B01G590300 chr2B 786908326 786911827 3501 True 5265.0 5265 93.8100 656 4175 1 chr2B.!!$R5 3519
3 TraesCS2B01G590300 chr2B 776656918 776658132 1214 True 1125.0 1125 83.7490 845 2060 1 chr2B.!!$R3 1215
4 TraesCS2B01G590300 chr2B 776637762 776638809 1047 True 1107.0 1107 85.7540 998 2060 1 chr2B.!!$R2 1062
5 TraesCS2B01G590300 chr2B 786887100 786888593 1493 True 794.9 1524 96.0020 2911 4212 2 chr2B.!!$R10 1301
6 TraesCS2B01G590300 chr2B 776418992 776420988 1996 False 785.5 1085 81.0800 998 3012 2 chr2B.!!$F3 2014
7 TraesCS2B01G590300 chr2B 786900984 786901916 932 True 724.5 968 94.4595 2911 3895 2 chr2B.!!$R11 984
8 TraesCS2B01G590300 chr2B 776597624 776599186 1562 True 723.0 1026 82.8880 1036 2638 2 chr2B.!!$R8 1602
9 TraesCS2B01G590300 chr2B 776608731 776610292 1561 True 705.0 979 82.6760 1036 2638 2 chr2B.!!$R9 1602
10 TraesCS2B01G590300 chr2B 776414159 776414759 600 False 632.0 632 85.7370 994 1605 1 chr2B.!!$F2 611
11 TraesCS2B01G590300 chr2B 786945388 786946178 790 True 611.0 680 95.1910 2911 3895 2 chr2B.!!$R12 984
12 TraesCS2B01G590300 chr2A 759170982 759174595 3613 False 1540.0 4353 90.6390 703 4209 3 chr2A.!!$F2 3506
13 TraesCS2B01G590300 chr2A 759294936 759295710 774 True 760.0 760 84.3710 1275 2060 1 chr2A.!!$R1 785
14 TraesCS2B01G590300 chr1B 643025163 643025801 638 False 1050.0 1050 96.4010 1 636 1 chr1B.!!$F2 635
15 TraesCS2B01G590300 chr1B 642813082 642813719 637 False 1020.0 1020 95.6110 1 635 1 chr1B.!!$F1 634
16 TraesCS2B01G590300 chr7B 739379507 739380145 638 False 1033.0 1033 95.9310 1 636 1 chr7B.!!$F1 635
17 TraesCS2B01G590300 chr7B 191892730 191893350 620 True 1027.0 1027 96.6180 1 618 1 chr7B.!!$R1 617
18 TraesCS2B01G590300 chr7B 498598921 498599559 638 True 1016.0 1016 95.4620 1 636 1 chr7B.!!$R2 635
19 TraesCS2B01G590300 chr3B 708391913 708392551 638 True 1020.0 1020 95.4830 1 639 1 chr3B.!!$R1 638
20 TraesCS2B01G590300 chr6B 121524186 121524827 641 False 1011.0 1011 95.1710 1 639 1 chr6B.!!$F1 638
21 TraesCS2B01G590300 chr6B 563975022 563975660 638 True 1011.0 1011 95.3050 1 636 1 chr6B.!!$R1 635
22 TraesCS2B01G590300 chr4B 655017131 655017769 638 True 1011.0 1011 95.3050 1 636 1 chr4B.!!$R1 635

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
642 646 0.466963 ACGAGAGGAAAACCGTGGTT 59.533 50.0 0.00 0.00 40.45 3.67 F
1372 1657 0.319555 CTTCAACCTCGGCGACTTCA 60.320 55.0 4.99 0.00 0.00 3.02 F
1684 1970 0.738975 CTTAGAGATGTCCGGCGTCA 59.261 55.0 16.91 5.22 35.60 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1459 1744 0.884704 TTCTTGGACTCTGCGTTGGC 60.885 55.0 0.00 0.0 40.52 4.52 R
2998 3358 0.035439 CTTAACCCGAGCCACCATGT 60.035 55.0 0.00 0.0 0.00 3.21 R
3630 4005 0.249955 TTCATGCGATCTGCTGACCA 59.750 50.0 10.16 0.0 46.63 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
177 181 1.671054 CGAACCACGAACCCAGCAT 60.671 57.895 0.00 0.00 45.77 3.79
206 210 2.092323 TCTTCCAGATGTCGTCGATGT 58.908 47.619 4.21 0.00 0.00 3.06
363 367 5.632347 GCTTGAACAAACTGATTTCCAGATG 59.368 40.000 0.00 0.00 45.78 2.90
480 484 9.668497 GATGAACAACCTAAAAACCTAGACTAT 57.332 33.333 0.00 0.00 0.00 2.12
639 643 2.537401 GGATACGAGAGGAAAACCGTG 58.463 52.381 0.00 0.00 36.58 4.94
640 644 2.537401 GATACGAGAGGAAAACCGTGG 58.463 52.381 0.00 0.00 36.58 4.94
641 645 1.331214 TACGAGAGGAAAACCGTGGT 58.669 50.000 0.00 0.00 36.58 4.16
642 646 0.466963 ACGAGAGGAAAACCGTGGTT 59.533 50.000 0.00 0.00 40.45 3.67
794 798 7.169645 TCACGCCGAAGTTATTATTTACCATAC 59.830 37.037 0.00 0.00 0.00 2.39
795 799 6.424812 ACGCCGAAGTTATTATTTACCATACC 59.575 38.462 0.00 0.00 0.00 2.73
796 800 6.424509 CGCCGAAGTTATTATTTACCATACCA 59.575 38.462 0.00 0.00 0.00 3.25
797 801 7.118680 CGCCGAAGTTATTATTTACCATACCAT 59.881 37.037 0.00 0.00 0.00 3.55
798 802 9.439500 GCCGAAGTTATTATTTACCATACCATA 57.561 33.333 0.00 0.00 0.00 2.74
1170 1430 0.599558 TCGTGTACAAGAACTCCGGG 59.400 55.000 9.17 0.00 0.00 5.73
1341 1626 4.133373 CCCCCGTCTACCCTCCGA 62.133 72.222 0.00 0.00 0.00 4.55
1372 1657 0.319555 CTTCAACCTCGGCGACTTCA 60.320 55.000 4.99 0.00 0.00 3.02
1684 1970 0.738975 CTTAGAGATGTCCGGCGTCA 59.261 55.000 16.91 5.22 35.60 4.35
1795 2081 1.289109 TACTTTCTTCTGTGCCGCGC 61.289 55.000 0.00 0.00 0.00 6.86
1878 2164 3.220940 TGATGAATGTGAAGCACCAACA 58.779 40.909 0.00 0.00 32.73 3.33
1913 2199 1.544759 GGAGTTTCCCATGGTCGTTGT 60.545 52.381 11.73 0.00 0.00 3.32
1922 2208 1.668237 CATGGTCGTTGTCAACACACA 59.332 47.619 15.79 10.36 29.76 3.72
2157 2443 2.442272 GGCGTCCTCAGGAGCCTA 60.442 66.667 21.13 0.00 40.40 3.93
2362 2652 4.568359 TGATTCATAGCAAGAAGACGAAGC 59.432 41.667 0.00 0.00 0.00 3.86
2467 2760 3.407698 AGCATGTCAATGGTACGTGAAA 58.592 40.909 0.00 0.00 42.66 2.69
2477 2781 7.744715 GTCAATGGTACGTGAAAACTTTCTATG 59.255 37.037 0.00 0.00 38.02 2.23
2501 2807 8.177119 TGTAGTTGCTTTTTGTTGGATTCTAT 57.823 30.769 0.00 0.00 0.00 1.98
2680 3009 9.962783 AGTTAACACGGTATACATCTATCTTTC 57.037 33.333 8.61 0.00 0.00 2.62
2681 3010 9.962783 GTTAACACGGTATACATCTATCTTTCT 57.037 33.333 5.01 0.00 0.00 2.52
2684 3013 9.886132 AACACGGTATACATCTATCTTTCTTTT 57.114 29.630 5.01 0.00 0.00 2.27
2685 3014 9.886132 ACACGGTATACATCTATCTTTCTTTTT 57.114 29.630 5.01 0.00 0.00 1.94
2782 3131 7.011016 CCAAAGAAAATTAAACCACTGGACAAC 59.989 37.037 0.71 0.00 0.00 3.32
2808 3157 6.897259 TTTTATACTGAATTTCGGACCTCG 57.103 37.500 12.18 0.00 40.90 4.63
2917 3273 2.167693 AGAATCCGGCTGACAATAACGA 59.832 45.455 0.00 0.00 0.00 3.85
2998 3358 3.766591 TCTTTGTTTCAAAGGACAGGCAA 59.233 39.130 18.08 0.00 0.00 4.52
3024 3384 0.935196 GGCTCGGGTTAAGCAATACG 59.065 55.000 7.03 0.91 41.66 3.06
3103 3463 4.627035 CACATATGACGGCGATGATACAAT 59.373 41.667 16.62 0.00 0.00 2.71
3239 3599 8.141268 CACCATGGACAAGTAATTACAGTTTTT 58.859 33.333 21.47 0.07 0.00 1.94
3427 3801 6.290294 ACTAGGAAAATTGCTTTGCATGAT 57.710 33.333 0.00 0.00 38.76 2.45
3428 3802 7.408756 ACTAGGAAAATTGCTTTGCATGATA 57.591 32.000 0.00 0.00 38.76 2.15
3430 3804 8.480501 ACTAGGAAAATTGCTTTGCATGATAAT 58.519 29.630 0.00 0.00 38.76 1.28
3431 3805 9.970395 CTAGGAAAATTGCTTTGCATGATAATA 57.030 29.630 0.00 0.00 38.76 0.98
3468 3842 9.869757 CTGACACGGGAATATATTATGATACAA 57.130 33.333 0.00 0.00 0.00 2.41
3515 3889 1.993542 TGCGGCAAATGTTTATGCAG 58.006 45.000 0.00 0.00 44.32 4.41
3575 3950 2.341846 TTTCCCTATGGTGGATTCGC 57.658 50.000 0.00 0.00 0.00 4.70
3630 4005 6.054941 TCATGCTCATCGTATGGTTACAATT 58.945 36.000 0.00 0.00 36.50 2.32
3664 4039 2.540361 GCATGAAGCCACACGAATCATC 60.540 50.000 0.00 0.00 37.23 2.92
3815 4194 3.127721 GGTCTTTTTGAGCTCACCTATGC 59.872 47.826 18.03 5.94 39.86 3.14
3838 4218 2.588286 ACGGAGTAGGGTTAGTGGC 58.412 57.895 0.00 0.00 41.94 5.01
3864 4244 1.669115 GCAGACGTGGCAGATGTGT 60.669 57.895 0.00 0.00 0.00 3.72
3898 4278 5.905331 CCTACATATGGGCTGGATATAAGGA 59.095 44.000 7.80 0.00 0.00 3.36
3952 4332 1.302993 GGCGCCTGAGTGGGTTAAA 60.303 57.895 22.15 0.00 36.00 1.52
4164 4545 0.179111 TGCGTCCTTCCTATTGCTCG 60.179 55.000 0.00 0.00 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.492604 CCTTGGAGGTCCGCAAAA 57.507 55.556 0.00 0.00 39.43 2.44
144 148 3.131577 GTGGTTCGTGGATGACAGGTATA 59.868 47.826 0.00 0.00 36.39 1.47
206 210 1.473257 GCGGATGCAGATTGTGGTCTA 60.473 52.381 0.00 0.00 42.15 2.59
363 367 0.178990 GGTCCTATGGTTGGGGATGC 60.179 60.000 0.00 0.00 0.00 3.91
480 484 4.693566 GTGTGGATCGTTTTTACTCATCCA 59.306 41.667 0.00 0.00 40.62 3.41
697 701 8.148999 AGTTCGGATTGGACTCCTATAAAATAC 58.851 37.037 0.00 0.00 32.77 1.89
794 798 3.722957 CGATCGGTGTACGTACGATATGG 60.723 52.174 24.41 8.92 46.12 2.74
795 799 3.120889 ACGATCGGTGTACGTACGATATG 60.121 47.826 24.41 15.77 46.12 1.78
796 800 3.059884 ACGATCGGTGTACGTACGATAT 58.940 45.455 24.41 11.02 46.12 1.63
797 801 2.218530 CACGATCGGTGTACGTACGATA 59.781 50.000 24.41 7.86 46.12 2.92
799 803 0.369931 CACGATCGGTGTACGTACGA 59.630 55.000 24.41 14.37 44.69 3.43
800 804 2.832640 CACGATCGGTGTACGTACG 58.167 57.895 20.98 15.01 44.69 3.67
821 825 7.236019 CCTAATACTACTCTCTGTCCTCTCCTA 59.764 44.444 0.00 0.00 0.00 2.94
912 1146 1.804748 GGTGGTGTTGCAAGCTAGTAC 59.195 52.381 0.00 0.00 0.00 2.73
1177 1437 1.375326 GGGTCCTGTCAACCACCTC 59.625 63.158 0.00 0.00 38.62 3.85
1178 1438 1.385347 TGGGTCCTGTCAACCACCT 60.385 57.895 0.00 0.00 38.62 4.00
1206 1466 3.311110 GAGCCGACCACCTGTCCA 61.311 66.667 0.00 0.00 41.18 4.02
1298 1583 0.036483 CGTGATGACATGTGTCCCCA 60.036 55.000 1.15 0.00 44.15 4.96
1341 1626 1.692519 AGGTTGAAGCTCCTTACGTGT 59.307 47.619 0.00 0.00 0.00 4.49
1459 1744 0.884704 TTCTTGGACTCTGCGTTGGC 60.885 55.000 0.00 0.00 40.52 4.52
1795 2081 2.579201 CCCCCAGCTACAGTCGTG 59.421 66.667 0.00 0.00 0.00 4.35
1878 2164 4.704103 TCCACCTCGGCCTGAGCT 62.704 66.667 16.29 0.00 43.82 4.09
1913 2199 2.976185 TCAAGGGAGGTATGTGTGTTGA 59.024 45.455 0.00 0.00 0.00 3.18
1922 2208 2.154567 TAGCACGTCAAGGGAGGTAT 57.845 50.000 0.00 0.00 39.97 2.73
2157 2443 2.037136 CGTCCGGTCTCCGTAGTGT 61.037 63.158 0.00 0.00 46.80 3.55
2467 2760 9.301153 CAACAAAAAGCAACTACATAGAAAGTT 57.699 29.630 0.00 0.00 36.38 2.66
2477 2781 9.129209 GAATAGAATCCAACAAAAAGCAACTAC 57.871 33.333 0.00 0.00 0.00 2.73
2683 3012 7.918562 CGAAGTGGAAAATGTTAGGAAGAAAAA 59.081 33.333 0.00 0.00 0.00 1.94
2684 3013 7.283580 TCGAAGTGGAAAATGTTAGGAAGAAAA 59.716 33.333 0.00 0.00 0.00 2.29
2685 3014 6.768861 TCGAAGTGGAAAATGTTAGGAAGAAA 59.231 34.615 0.00 0.00 0.00 2.52
2686 3015 6.204108 GTCGAAGTGGAAAATGTTAGGAAGAA 59.796 38.462 0.00 0.00 0.00 2.52
2687 3016 5.699458 GTCGAAGTGGAAAATGTTAGGAAGA 59.301 40.000 0.00 0.00 0.00 2.87
2688 3017 5.468746 TGTCGAAGTGGAAAATGTTAGGAAG 59.531 40.000 0.00 0.00 0.00 3.46
2689 3018 5.369833 TGTCGAAGTGGAAAATGTTAGGAA 58.630 37.500 0.00 0.00 0.00 3.36
2690 3019 4.963373 TGTCGAAGTGGAAAATGTTAGGA 58.037 39.130 0.00 0.00 0.00 2.94
2691 3020 5.682943 TTGTCGAAGTGGAAAATGTTAGG 57.317 39.130 0.00 0.00 0.00 2.69
2700 3029 6.443934 TGATTTTTCTTTGTCGAAGTGGAA 57.556 33.333 0.00 0.00 36.70 3.53
2800 3149 9.635520 AATTCAGTATAAAATATACGAGGTCCG 57.364 33.333 0.00 0.00 45.44 4.79
2873 3222 8.153221 TCTGTAGACCATGGTCCTAAAATAAA 57.847 34.615 36.09 17.78 45.59 1.40
2998 3358 0.035439 CTTAACCCGAGCCACCATGT 60.035 55.000 0.00 0.00 0.00 3.21
3024 3384 1.600916 GCCACCAGTTCCCTGTCAC 60.601 63.158 0.00 0.00 36.95 3.67
3103 3463 3.223674 TGGTAGCATCGGATGTCTCTA 57.776 47.619 18.54 9.27 0.00 2.43
3239 3599 9.611284 CAATTTGATTCTTCATCGTTCTGTAAA 57.389 29.630 0.00 0.00 34.08 2.01
3245 3605 7.077605 TCACACAATTTGATTCTTCATCGTTC 58.922 34.615 2.79 0.00 34.08 3.95
3248 3608 8.456904 AAATCACACAATTTGATTCTTCATCG 57.543 30.769 2.79 0.00 41.81 3.84
3427 3801 8.866970 TCCCGTGTCAGTGTGTATATATATTA 57.133 34.615 0.00 0.00 0.00 0.98
3428 3802 7.770366 TCCCGTGTCAGTGTGTATATATATT 57.230 36.000 0.00 0.00 0.00 1.28
3430 3804 7.770366 ATTCCCGTGTCAGTGTGTATATATA 57.230 36.000 0.00 0.00 0.00 0.86
3431 3805 6.665992 ATTCCCGTGTCAGTGTGTATATAT 57.334 37.500 0.00 0.00 0.00 0.86
3602 3977 5.728637 AACCATACGATGAGCATGATCTA 57.271 39.130 12.92 0.00 0.00 1.98
3630 4005 0.249955 TTCATGCGATCTGCTGACCA 59.750 50.000 10.16 0.00 46.63 4.02
3664 4039 1.447317 GGCACTTCACACACCACAGG 61.447 60.000 0.00 0.00 0.00 4.00
3815 4194 2.165845 CACTAACCCTACTCCGTCCAAG 59.834 54.545 0.00 0.00 0.00 3.61
3898 4278 2.801631 GCTCCGGCTATCTGGCACT 61.802 63.158 0.00 0.00 41.89 4.40
3987 4368 2.664835 AAACCGGTCCCAAATGCCCA 62.665 55.000 8.04 0.00 0.00 5.36
4108 4489 2.965147 AGAAATGTGTGTTCCCCAAAGG 59.035 45.455 0.00 0.00 0.00 3.11
4164 4545 1.278238 CCCGAGAACATCAGCGTTAC 58.722 55.000 0.00 0.00 0.00 2.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.