Multiple sequence alignment - TraesCS2B01G590100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G590100 chr2B 100.000 2408 0 0 1 2408 776409745 776412152 0.000000e+00 4447
1 TraesCS2B01G590100 chr2D 88.936 714 42 13 389 1075 633207642 633208345 0.000000e+00 846
2 TraesCS2B01G590100 chr2D 92.607 514 36 2 1896 2408 360429062 360429574 0.000000e+00 737
3 TraesCS2B01G590100 chr2D 92.812 473 33 1 1374 1846 633295076 633294605 0.000000e+00 684
4 TraesCS2B01G590100 chr2D 91.824 477 36 3 1374 1850 633210543 633211016 0.000000e+00 662
5 TraesCS2B01G590100 chr2D 89.980 509 49 2 1901 2408 318432086 318432593 0.000000e+00 656
6 TraesCS2B01G590100 chr2D 89.130 506 53 2 1904 2408 29065439 29065943 1.570000e-176 628
7 TraesCS2B01G590100 chr2D 93.413 334 15 4 29 361 633207318 633207645 2.780000e-134 488
8 TraesCS2B01G590100 chr2D 97.260 146 4 0 1104 1249 633208339 633208484 5.140000e-62 248
9 TraesCS2B01G590100 chr5B 92.205 526 38 3 1884 2408 670190995 670191518 0.000000e+00 741
10 TraesCS2B01G590100 chr5B 91.985 524 38 3 1884 2406 7938168 7937648 0.000000e+00 732
11 TraesCS2B01G590100 chr4B 91.985 524 39 3 1884 2406 364351224 364350703 0.000000e+00 732
12 TraesCS2B01G590100 chr6A 90.267 524 48 3 1884 2406 54976381 54975860 0.000000e+00 682
13 TraesCS2B01G590100 chr7D 89.689 514 51 2 1896 2408 632105645 632105133 0.000000e+00 654
14 TraesCS2B01G590100 chr3B 89.105 514 54 2 1896 2408 822558074 822557562 2.610000e-179 638
15 TraesCS2B01G590100 chr4A 81.991 422 73 3 1418 1838 734997795 734998214 2.940000e-94 355
16 TraesCS2B01G590100 chr4A 81.754 422 72 5 1418 1837 734481198 734481616 4.930000e-92 348
17 TraesCS2B01G590100 chr4A 80.000 475 87 7 1374 1846 735777418 735777886 6.370000e-91 344
18 TraesCS2B01G590100 chr4A 78.692 474 95 6 1374 1846 734386192 734386660 6.460000e-81 311
19 TraesCS2B01G590100 chr4A 78.647 473 97 2 1374 1846 736120741 736121209 6.460000e-81 311
20 TraesCS2B01G590100 chr4A 79.677 433 79 8 1418 1846 735819761 735820188 1.080000e-78 303
21 TraesCS2B01G590100 chr4A 79.529 425 78 8 1418 1838 736757379 736757798 6.510000e-76 294
22 TraesCS2B01G590100 chr1D 78.892 379 77 2 999 1374 459031446 459031068 1.100000e-63 254
23 TraesCS2B01G590100 chr3D 80.795 302 52 5 984 1282 428245447 428245745 5.180000e-57 231
24 TraesCS2B01G590100 chr3A 81.319 273 51 0 1010 1282 557419080 557418808 3.120000e-54 222
25 TraesCS2B01G590100 chr6D 77.987 318 65 3 993 1309 469800191 469800504 6.790000e-46 195
26 TraesCS2B01G590100 chrUn 77.885 312 64 3 999 1309 62079781 62079474 3.160000e-44 189
27 TraesCS2B01G590100 chrUn 77.885 312 64 3 999 1309 331320452 331320145 3.160000e-44 189


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G590100 chr2B 776409745 776412152 2407 False 4447 4447 100.00000 1 2408 1 chr2B.!!$F1 2407
1 TraesCS2B01G590100 chr2D 360429062 360429574 512 False 737 737 92.60700 1896 2408 1 chr2D.!!$F3 512
2 TraesCS2B01G590100 chr2D 318432086 318432593 507 False 656 656 89.98000 1901 2408 1 chr2D.!!$F2 507
3 TraesCS2B01G590100 chr2D 29065439 29065943 504 False 628 628 89.13000 1904 2408 1 chr2D.!!$F1 504
4 TraesCS2B01G590100 chr2D 633207318 633211016 3698 False 561 846 92.85825 29 1850 4 chr2D.!!$F4 1821
5 TraesCS2B01G590100 chr5B 670190995 670191518 523 False 741 741 92.20500 1884 2408 1 chr5B.!!$F1 524
6 TraesCS2B01G590100 chr5B 7937648 7938168 520 True 732 732 91.98500 1884 2406 1 chr5B.!!$R1 522
7 TraesCS2B01G590100 chr4B 364350703 364351224 521 True 732 732 91.98500 1884 2406 1 chr4B.!!$R1 522
8 TraesCS2B01G590100 chr6A 54975860 54976381 521 True 682 682 90.26700 1884 2406 1 chr6A.!!$R1 522
9 TraesCS2B01G590100 chr7D 632105133 632105645 512 True 654 654 89.68900 1896 2408 1 chr7D.!!$R1 512
10 TraesCS2B01G590100 chr3B 822557562 822558074 512 True 638 638 89.10500 1896 2408 1 chr3B.!!$R1 512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
202 203 0.109597 GTGCTGCTCGGAAAACCATG 60.110 55.0 0.00 0.00 0.0 3.66 F
1100 1128 0.042188 CTTGGTGTTGACTTGACGCG 60.042 55.0 3.53 3.53 0.0 6.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1348 2921 0.036010 CTGTTCTCCGGGCACAGATT 60.036 55.000 18.58 0.0 40.43 2.40 R
2330 4293 2.163412 GTGAATTTATTGCGGGTGAGCA 59.837 45.455 0.00 0.0 46.54 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.416601 CCGGTTCCCTCCCTCCCT 62.417 72.222 0.00 0.00 0.00 4.20
22 23 2.764547 CGGTTCCCTCCCTCCCTC 60.765 72.222 0.00 0.00 0.00 4.30
23 24 2.764547 GGTTCCCTCCCTCCCTCG 60.765 72.222 0.00 0.00 0.00 4.63
24 25 2.764547 GTTCCCTCCCTCCCTCGG 60.765 72.222 0.00 0.00 0.00 4.63
25 26 4.798682 TTCCCTCCCTCCCTCGGC 62.799 72.222 0.00 0.00 0.00 5.54
83 84 2.356022 CCCAAATTGAGGGGCCATTTTC 60.356 50.000 4.39 0.00 42.90 2.29
110 111 1.474077 GTGTTGTCATGGATTCCCTGC 59.526 52.381 0.00 0.00 0.00 4.85
184 185 3.094572 CAGGCCTGAATTCTGAAATGGT 58.905 45.455 29.88 0.00 0.00 3.55
188 189 3.675228 GCCTGAATTCTGAAATGGTGCTG 60.675 47.826 13.45 0.00 0.00 4.41
199 200 1.244019 ATGGTGCTGCTCGGAAAACC 61.244 55.000 0.00 0.00 0.00 3.27
200 201 1.896660 GGTGCTGCTCGGAAAACCA 60.897 57.895 0.00 0.00 0.00 3.67
201 202 1.244019 GGTGCTGCTCGGAAAACCAT 61.244 55.000 0.00 0.00 0.00 3.55
202 203 0.109597 GTGCTGCTCGGAAAACCATG 60.110 55.000 0.00 0.00 0.00 3.66
235 236 2.089982 ACTGATGGATGGTGATAGGGGA 60.090 50.000 0.00 0.00 0.00 4.81
236 237 2.570752 CTGATGGATGGTGATAGGGGAG 59.429 54.545 0.00 0.00 0.00 4.30
237 238 2.182088 TGATGGATGGTGATAGGGGAGA 59.818 50.000 0.00 0.00 0.00 3.71
284 285 2.889678 CCACGTACTACCCTATCCCTTC 59.110 54.545 0.00 0.00 0.00 3.46
289 290 6.322201 CACGTACTACCCTATCCCTTCTTTTA 59.678 42.308 0.00 0.00 0.00 1.52
307 308 6.530120 TCTTTTAACTCATTGACCTGCTGTA 58.470 36.000 0.00 0.00 0.00 2.74
332 333 0.392193 AGCACTGCCTCTCATTTCGG 60.392 55.000 0.00 0.00 0.00 4.30
366 367 3.205784 CTGATCCCAGTTCCATTCTCC 57.794 52.381 0.00 0.00 35.70 3.71
367 368 1.846439 TGATCCCAGTTCCATTCTCCC 59.154 52.381 0.00 0.00 0.00 4.30
368 369 2.131023 GATCCCAGTTCCATTCTCCCT 58.869 52.381 0.00 0.00 0.00 4.20
369 370 1.584724 TCCCAGTTCCATTCTCCCTC 58.415 55.000 0.00 0.00 0.00 4.30
370 371 1.081174 TCCCAGTTCCATTCTCCCTCT 59.919 52.381 0.00 0.00 0.00 3.69
371 372 1.211457 CCCAGTTCCATTCTCCCTCTG 59.789 57.143 0.00 0.00 0.00 3.35
372 373 1.407989 CCAGTTCCATTCTCCCTCTGC 60.408 57.143 0.00 0.00 0.00 4.26
373 374 0.915364 AGTTCCATTCTCCCTCTGCC 59.085 55.000 0.00 0.00 0.00 4.85
374 375 0.462759 GTTCCATTCTCCCTCTGCCG 60.463 60.000 0.00 0.00 0.00 5.69
375 376 0.909610 TTCCATTCTCCCTCTGCCGT 60.910 55.000 0.00 0.00 0.00 5.68
376 377 1.144936 CCATTCTCCCTCTGCCGTC 59.855 63.158 0.00 0.00 0.00 4.79
377 378 1.227089 CATTCTCCCTCTGCCGTCG 60.227 63.158 0.00 0.00 0.00 5.12
378 379 1.682684 ATTCTCCCTCTGCCGTCGT 60.683 57.895 0.00 0.00 0.00 4.34
379 380 1.258445 ATTCTCCCTCTGCCGTCGTT 61.258 55.000 0.00 0.00 0.00 3.85
380 381 0.609957 TTCTCCCTCTGCCGTCGTTA 60.610 55.000 0.00 0.00 0.00 3.18
381 382 1.139095 CTCCCTCTGCCGTCGTTAC 59.861 63.158 0.00 0.00 0.00 2.50
382 383 2.183555 CCCTCTGCCGTCGTTACC 59.816 66.667 0.00 0.00 0.00 2.85
383 384 2.348888 CCCTCTGCCGTCGTTACCT 61.349 63.158 0.00 0.00 0.00 3.08
384 385 1.590147 CCTCTGCCGTCGTTACCTT 59.410 57.895 0.00 0.00 0.00 3.50
385 386 0.813184 CCTCTGCCGTCGTTACCTTA 59.187 55.000 0.00 0.00 0.00 2.69
386 387 1.468736 CCTCTGCCGTCGTTACCTTAC 60.469 57.143 0.00 0.00 0.00 2.34
387 388 1.200716 CTCTGCCGTCGTTACCTTACA 59.799 52.381 0.00 0.00 0.00 2.41
445 446 2.270205 CAAGCTCCTGCATCCCGT 59.730 61.111 0.00 0.00 42.74 5.28
456 457 0.454452 GCATCCCGTTTCGCTGTTTC 60.454 55.000 0.00 0.00 0.00 2.78
460 461 0.179225 CCCGTTTCGCTGTTTCATCG 60.179 55.000 0.00 0.00 0.00 3.84
479 480 2.029290 TCGGTGTAAGCTTCTTCACCTC 60.029 50.000 28.83 15.17 45.44 3.85
518 519 2.677037 CGTTAGCTTCCCCGTCAGATTT 60.677 50.000 0.00 0.00 0.00 2.17
522 523 4.236527 AGCTTCCCCGTCAGATTTTTAT 57.763 40.909 0.00 0.00 0.00 1.40
526 527 3.881220 TCCCCGTCAGATTTTTATGGAC 58.119 45.455 0.00 0.00 0.00 4.02
529 530 3.627577 CCCGTCAGATTTTTATGGACTGG 59.372 47.826 0.00 0.00 0.00 4.00
542 543 8.698973 TTTTATGGACTGGTTTGTCTTCATAA 57.301 30.769 0.00 0.00 37.16 1.90
551 552 1.667236 TGTCTTCATAAGCATGCCGG 58.333 50.000 15.66 0.00 31.73 6.13
552 553 1.065491 TGTCTTCATAAGCATGCCGGT 60.065 47.619 15.66 2.34 31.73 5.28
568 569 3.133183 TGCCGGTGTAGTCTGCATATTTA 59.867 43.478 1.90 0.00 0.00 1.40
569 570 4.202315 TGCCGGTGTAGTCTGCATATTTAT 60.202 41.667 1.90 0.00 0.00 1.40
570 571 5.011227 TGCCGGTGTAGTCTGCATATTTATA 59.989 40.000 1.90 0.00 0.00 0.98
597 598 5.125417 TCCACACAAAAGAAGAAACAGGAAG 59.875 40.000 0.00 0.00 0.00 3.46
598 599 5.105756 CCACACAAAAGAAGAAACAGGAAGT 60.106 40.000 0.00 0.00 0.00 3.01
599 600 6.094881 CCACACAAAAGAAGAAACAGGAAGTA 59.905 38.462 0.00 0.00 0.00 2.24
600 601 7.201821 CCACACAAAAGAAGAAACAGGAAGTAT 60.202 37.037 0.00 0.00 0.00 2.12
639 641 7.759433 ACTTTGATTAGTTGGTTCACACAAAAG 59.241 33.333 0.00 0.00 0.00 2.27
650 652 5.519927 GGTTCACACAAAAGAAGAAACATGG 59.480 40.000 0.00 0.00 0.00 3.66
673 675 9.679661 ATGGGTGGTTAAAATAATTGAATTTCC 57.320 29.630 0.00 0.00 0.00 3.13
675 677 8.103935 GGGTGGTTAAAATAATTGAATTTCCCA 58.896 33.333 0.00 0.00 30.89 4.37
698 722 8.096414 CCCAAAAGAATGAGTGGTGAAAATAAT 58.904 33.333 0.00 0.00 0.00 1.28
729 753 6.446318 AGTTTGCTGTTGTTTACATACCATG 58.554 36.000 0.00 0.00 35.85 3.66
734 758 5.504010 GCTGTTGTTTACATACCATGATCCG 60.504 44.000 0.00 0.00 35.85 4.18
736 760 5.583061 TGTTGTTTACATACCATGATCCGTC 59.417 40.000 0.00 0.00 0.00 4.79
741 765 4.659111 ACATACCATGATCCGTCGTTTA 57.341 40.909 0.00 0.00 0.00 2.01
749 773 3.979948 TGATCCGTCGTTTACTTGTTCA 58.020 40.909 0.00 0.00 0.00 3.18
771 795 2.238646 TGTTCGCCCTATGTCATTTCCT 59.761 45.455 0.00 0.00 0.00 3.36
772 796 2.872858 GTTCGCCCTATGTCATTTCCTC 59.127 50.000 0.00 0.00 0.00 3.71
782 806 6.600822 CCTATGTCATTTCCTCAAATCAGTGT 59.399 38.462 0.00 0.00 28.97 3.55
795 819 7.337689 CCTCAAATCAGTGTCTTTTATCCATCA 59.662 37.037 0.00 0.00 0.00 3.07
796 820 8.812513 TCAAATCAGTGTCTTTTATCCATCAT 57.187 30.769 0.00 0.00 0.00 2.45
797 821 9.904198 TCAAATCAGTGTCTTTTATCCATCATA 57.096 29.630 0.00 0.00 0.00 2.15
816 842 7.124750 CCATCATATGGTTTCCTTTTTCCTCTT 59.875 37.037 2.13 0.00 45.54 2.85
877 905 2.097142 GCTCATGTCTGCAATTGGAGTC 59.903 50.000 24.15 19.64 34.87 3.36
893 921 9.653287 CAATTGGAGTCTACTCTACATGTTTAA 57.347 33.333 2.30 0.00 42.48 1.52
930 958 5.761234 TCACACTATTTCCTGTGTTTACACC 59.239 40.000 10.28 0.00 43.88 4.16
946 974 2.338809 ACACCAGATCCAGGTTTCTGA 58.661 47.619 18.50 0.00 43.49 3.27
988 1016 4.633565 GGGAAACATCAGCAACAACAAAAA 59.366 37.500 0.00 0.00 0.00 1.94
1008 1036 1.227102 CCGCAATCCCATGGAGGAA 59.773 57.895 15.22 0.00 40.04 3.36
1017 1045 1.377725 CATGGAGGAAGTGGCGCTT 60.378 57.895 14.09 14.09 40.76 4.68
1047 1075 1.603172 CGACTGGCGGTATCTCCAATC 60.603 57.143 0.00 0.00 36.03 2.67
1075 1103 4.019860 AGGAGCTCATCACTAAAGCTTCAA 60.020 41.667 17.19 0.00 46.01 2.69
1076 1104 4.094146 GGAGCTCATCACTAAAGCTTCAAC 59.906 45.833 17.19 0.00 46.01 3.18
1077 1105 4.645535 AGCTCATCACTAAAGCTTCAACA 58.354 39.130 0.00 0.00 43.67 3.33
1078 1106 5.251764 AGCTCATCACTAAAGCTTCAACAT 58.748 37.500 0.00 0.00 43.67 2.71
1079 1107 6.409704 AGCTCATCACTAAAGCTTCAACATA 58.590 36.000 0.00 0.00 43.67 2.29
1080 1108 6.314896 AGCTCATCACTAAAGCTTCAACATAC 59.685 38.462 0.00 0.00 43.67 2.39
1081 1109 6.457528 GCTCATCACTAAAGCTTCAACATACC 60.458 42.308 0.00 0.00 33.23 2.73
1082 1110 6.711277 TCATCACTAAAGCTTCAACATACCT 58.289 36.000 0.00 0.00 0.00 3.08
1083 1111 7.168219 TCATCACTAAAGCTTCAACATACCTT 58.832 34.615 0.00 0.00 0.00 3.50
1084 1112 6.801539 TCACTAAAGCTTCAACATACCTTG 57.198 37.500 0.00 0.00 0.00 3.61
1085 1113 5.705441 TCACTAAAGCTTCAACATACCTTGG 59.295 40.000 0.00 0.00 0.00 3.61
1086 1114 5.473504 CACTAAAGCTTCAACATACCTTGGT 59.526 40.000 0.00 0.00 0.00 3.67
1087 1115 4.853924 AAAGCTTCAACATACCTTGGTG 57.146 40.909 0.00 0.00 44.97 4.17
1088 1116 3.508845 AGCTTCAACATACCTTGGTGT 57.491 42.857 2.03 0.00 43.93 4.16
1089 1117 3.832527 AGCTTCAACATACCTTGGTGTT 58.167 40.909 2.03 0.00 43.93 3.32
1096 1124 4.431416 ACATACCTTGGTGTTGACTTGA 57.569 40.909 2.03 0.00 0.00 3.02
1097 1125 4.134563 ACATACCTTGGTGTTGACTTGAC 58.865 43.478 2.03 0.00 0.00 3.18
1098 1126 1.663695 ACCTTGGTGTTGACTTGACG 58.336 50.000 0.00 0.00 0.00 4.35
1099 1127 0.307760 CCTTGGTGTTGACTTGACGC 59.692 55.000 0.00 0.00 0.00 5.19
1100 1128 0.042188 CTTGGTGTTGACTTGACGCG 60.042 55.000 3.53 3.53 0.00 6.01
1101 1129 0.741574 TTGGTGTTGACTTGACGCGT 60.742 50.000 13.85 13.85 0.00 6.01
1102 1130 1.275657 GGTGTTGACTTGACGCGTG 59.724 57.895 20.70 4.59 0.00 5.34
1103 1131 1.149361 GGTGTTGACTTGACGCGTGA 61.149 55.000 20.70 4.74 0.00 4.35
1104 1132 0.229753 GTGTTGACTTGACGCGTGAG 59.770 55.000 20.70 17.34 0.00 3.51
1249 1277 1.625315 CTGAGGACCTGTTGGATGACA 59.375 52.381 0.00 0.00 37.04 3.58
1252 1280 3.077359 GAGGACCTGTTGGATGACAAAG 58.923 50.000 0.00 0.00 41.58 2.77
1255 1283 3.496870 GGACCTGTTGGATGACAAAGAGT 60.497 47.826 0.00 0.00 41.58 3.24
1256 1284 4.262894 GGACCTGTTGGATGACAAAGAGTA 60.263 45.833 0.00 0.00 41.58 2.59
1258 1286 4.102524 ACCTGTTGGATGACAAAGAGTACA 59.897 41.667 0.00 0.00 41.58 2.90
1259 1287 5.063204 CCTGTTGGATGACAAAGAGTACAA 58.937 41.667 0.00 0.00 41.58 2.41
1260 1288 5.049405 CCTGTTGGATGACAAAGAGTACAAC 60.049 44.000 0.00 0.00 41.58 3.32
1261 1289 5.680619 TGTTGGATGACAAAGAGTACAACT 58.319 37.500 0.00 0.00 41.58 3.16
1262 1290 6.119536 TGTTGGATGACAAAGAGTACAACTT 58.880 36.000 0.00 0.00 41.58 2.66
1263 1291 6.601613 TGTTGGATGACAAAGAGTACAACTTT 59.398 34.615 10.75 10.75 41.58 2.66
1264 1292 6.861065 TGGATGACAAAGAGTACAACTTTC 57.139 37.500 12.79 6.42 35.74 2.62
1265 1293 6.591935 TGGATGACAAAGAGTACAACTTTCT 58.408 36.000 12.79 4.69 35.74 2.52
1267 1295 6.706270 GGATGACAAAGAGTACAACTTTCTCA 59.294 38.462 17.87 17.87 36.96 3.27
1268 1296 7.226720 GGATGACAAAGAGTACAACTTTCTCAA 59.773 37.037 18.75 9.37 36.47 3.02
1269 1297 7.539712 TGACAAAGAGTACAACTTTCTCAAG 57.460 36.000 15.28 8.48 35.74 3.02
1270 1298 6.037172 TGACAAAGAGTACAACTTTCTCAAGC 59.963 38.462 15.28 0.00 35.74 4.01
1271 1299 5.006746 ACAAAGAGTACAACTTTCTCAAGCG 59.993 40.000 12.79 5.65 35.74 4.68
1272 1300 3.060602 AGAGTACAACTTTCTCAAGCGC 58.939 45.455 0.00 0.00 32.57 5.92
1274 1302 3.202906 AGTACAACTTTCTCAAGCGCAA 58.797 40.909 11.47 0.00 32.57 4.85
1275 1303 3.625764 AGTACAACTTTCTCAAGCGCAAA 59.374 39.130 11.47 0.00 32.57 3.68
1276 1304 3.070429 ACAACTTTCTCAAGCGCAAAG 57.930 42.857 11.47 12.91 32.57 2.77
1297 2870 3.149492 GCAAAGGGCAAGAAGGATTCCT 61.149 50.000 0.00 0.00 44.77 3.36
1307 2880 2.437413 GAAGGATTCCTCCACCAACAC 58.563 52.381 5.48 0.00 44.79 3.32
1310 2883 1.168714 GATTCCTCCACCAACACTGC 58.831 55.000 0.00 0.00 0.00 4.40
1313 2886 0.550914 TCCTCCACCAACACTGCTTT 59.449 50.000 0.00 0.00 0.00 3.51
1315 2888 1.679139 CTCCACCAACACTGCTTTGA 58.321 50.000 0.00 0.00 0.00 2.69
1316 2889 2.023673 CTCCACCAACACTGCTTTGAA 58.976 47.619 0.00 0.00 0.00 2.69
1327 2900 3.132863 GCTTTGAAGCCTTGGCATG 57.867 52.632 14.54 0.00 46.20 4.06
1329 2902 0.606604 CTTTGAAGCCTTGGCATGCT 59.393 50.000 18.92 6.24 40.17 3.79
1330 2903 1.820519 CTTTGAAGCCTTGGCATGCTA 59.179 47.619 18.92 9.16 36.66 3.49
1331 2904 2.148446 TTGAAGCCTTGGCATGCTAT 57.852 45.000 18.92 0.00 36.66 2.97
1332 2905 1.395635 TGAAGCCTTGGCATGCTATG 58.604 50.000 18.92 13.81 36.66 2.23
1335 2908 0.816825 AGCCTTGGCATGCTATGTCG 60.817 55.000 18.92 3.40 37.81 4.35
1336 2909 0.815213 GCCTTGGCATGCTATGTCGA 60.815 55.000 18.92 0.00 37.81 4.20
1337 2910 1.224075 CCTTGGCATGCTATGTCGAG 58.776 55.000 18.92 9.26 44.29 4.04
1338 2911 0.585357 CTTGGCATGCTATGTCGAGC 59.415 55.000 18.92 0.00 39.34 5.03
1347 2920 1.594862 GCTATGTCGAGCATGTTGTCC 59.405 52.381 9.77 0.00 42.36 4.02
1348 2921 2.892374 CTATGTCGAGCATGTTGTCCA 58.108 47.619 9.77 0.00 38.47 4.02
1349 2922 2.183478 ATGTCGAGCATGTTGTCCAA 57.817 45.000 0.00 0.00 36.26 3.53
1351 2924 2.076100 TGTCGAGCATGTTGTCCAATC 58.924 47.619 0.00 0.00 0.00 2.67
1352 2925 2.289631 TGTCGAGCATGTTGTCCAATCT 60.290 45.455 0.00 0.00 0.00 2.40
1353 2926 2.094894 GTCGAGCATGTTGTCCAATCTG 59.905 50.000 0.00 0.00 0.00 2.90
1354 2927 2.079158 CGAGCATGTTGTCCAATCTGT 58.921 47.619 0.00 0.00 0.00 3.41
1355 2928 2.159612 CGAGCATGTTGTCCAATCTGTG 60.160 50.000 0.00 0.00 0.00 3.66
1356 2929 1.542915 AGCATGTTGTCCAATCTGTGC 59.457 47.619 0.00 0.00 0.00 4.57
1357 2930 1.403249 GCATGTTGTCCAATCTGTGCC 60.403 52.381 0.00 0.00 0.00 5.01
1358 2931 1.203052 CATGTTGTCCAATCTGTGCCC 59.797 52.381 0.00 0.00 0.00 5.36
1359 2932 0.888736 TGTTGTCCAATCTGTGCCCG 60.889 55.000 0.00 0.00 0.00 6.13
1363 2936 1.612146 TCCAATCTGTGCCCGGAGA 60.612 57.895 0.73 0.00 0.00 3.71
1364 2937 1.198094 TCCAATCTGTGCCCGGAGAA 61.198 55.000 0.73 0.00 0.00 2.87
1366 2939 0.321564 CAATCTGTGCCCGGAGAACA 60.322 55.000 0.73 2.85 0.00 3.18
1368 2941 1.533033 TCTGTGCCCGGAGAACAGA 60.533 57.895 22.88 22.88 46.05 3.41
1369 2942 1.118965 TCTGTGCCCGGAGAACAGAA 61.119 55.000 23.91 12.43 45.45 3.02
1370 2943 0.250295 CTGTGCCCGGAGAACAGAAA 60.250 55.000 20.76 0.00 43.22 2.52
1371 2944 0.250295 TGTGCCCGGAGAACAGAAAG 60.250 55.000 0.73 0.00 0.00 2.62
1372 2945 1.302511 TGCCCGGAGAACAGAAAGC 60.303 57.895 0.73 0.00 0.00 3.51
1377 3339 2.093447 CCCGGAGAACAGAAAGCTACAT 60.093 50.000 0.73 0.00 0.00 2.29
1386 3348 2.352960 CAGAAAGCTACATTTCCGGCTC 59.647 50.000 0.00 0.00 39.53 4.70
1392 3354 2.827652 CTACATTTCCGGCTCCTCTTC 58.172 52.381 0.00 0.00 0.00 2.87
1393 3355 0.984230 ACATTTCCGGCTCCTCTTCA 59.016 50.000 0.00 0.00 0.00 3.02
1404 3366 2.816087 GCTCCTCTTCATTGCAGTGAAA 59.184 45.455 22.90 13.88 37.63 2.69
1413 3375 9.713740 CTCTTCATTGCAGTGAAATAGTATTTC 57.286 33.333 22.90 23.28 37.63 2.17
1436 3398 6.001460 TCGTTTGGAAAACATGGAAGATAGT 58.999 36.000 0.00 0.00 0.00 2.12
1437 3399 6.488683 TCGTTTGGAAAACATGGAAGATAGTT 59.511 34.615 0.00 0.00 0.00 2.24
1447 3409 8.611051 AACATGGAAGATAGTTAGTTCCTAGT 57.389 34.615 0.00 0.00 40.49 2.57
1471 3433 8.275040 AGTACTATTCAAATACCATGCCTTCTT 58.725 33.333 0.00 0.00 0.00 2.52
1477 3439 5.047377 TCAAATACCATGCCTTCTTTGAACC 60.047 40.000 0.00 0.00 31.69 3.62
1500 3462 5.159209 CAGAAATCAGAAATCCACAGTTGC 58.841 41.667 0.00 0.00 0.00 4.17
1544 3506 4.634443 GCAGAGGAAATCGTTAAAAGGCTA 59.366 41.667 0.00 0.00 0.00 3.93
1547 3509 5.189145 AGAGGAAATCGTTAAAAGGCTAGGA 59.811 40.000 0.00 0.00 0.00 2.94
1584 3546 1.119684 AAAAGTTGTGGGTTCCCAGC 58.880 50.000 11.21 7.10 36.70 4.85
1589 3551 0.178992 TTGTGGGTTCCCAGCTGAAG 60.179 55.000 17.39 6.31 36.70 3.02
1592 3554 2.356667 GGTTCCCAGCTGAAGGGG 59.643 66.667 17.39 8.09 46.77 4.79
1620 3582 7.414222 ACAAATATCAGTGCATGGAAAGATT 57.586 32.000 7.74 0.00 0.00 2.40
1626 3588 6.053632 TCAGTGCATGGAAAGATTCTCTAA 57.946 37.500 0.00 0.00 0.00 2.10
1668 3630 2.449312 AGCCCAGGAGAGCTCTGT 59.551 61.111 23.91 4.97 32.71 3.41
1670 3632 1.078567 GCCCAGGAGAGCTCTGTTG 60.079 63.158 23.91 18.00 0.00 3.33
1701 3663 8.569641 GTTATGAGAAGTTAGATCCACGTCTAT 58.430 37.037 10.01 7.74 33.71 1.98
1745 3707 5.738783 GCAGCTTATTTCCAAAAGGTCACAA 60.739 40.000 0.00 0.00 31.36 3.33
1751 3713 8.698973 TTATTTCCAAAAGGTCACAAGTATGA 57.301 30.769 0.00 0.00 0.00 2.15
1765 3727 1.825474 AGTATGACACCGAGGAGTTGG 59.175 52.381 0.00 0.00 0.00 3.77
1773 3735 1.263356 CCGAGGAGTTGGTTCACCTA 58.737 55.000 0.00 0.00 36.82 3.08
1794 3756 1.559682 TGGGTAGCAGAGGGATTTGTC 59.440 52.381 0.00 0.00 0.00 3.18
1836 3798 6.016443 GCAAGAGAATGGAAGATATTGGAAGG 60.016 42.308 0.00 0.00 0.00 3.46
1837 3799 6.198237 AGAGAATGGAAGATATTGGAAGGG 57.802 41.667 0.00 0.00 0.00 3.95
1838 3800 5.074239 AGAGAATGGAAGATATTGGAAGGGG 59.926 44.000 0.00 0.00 0.00 4.79
1839 3801 4.733988 AGAATGGAAGATATTGGAAGGGGT 59.266 41.667 0.00 0.00 0.00 4.95
1840 3802 5.196574 AGAATGGAAGATATTGGAAGGGGTT 59.803 40.000 0.00 0.00 0.00 4.11
1841 3803 6.392842 AGAATGGAAGATATTGGAAGGGGTTA 59.607 38.462 0.00 0.00 0.00 2.85
1842 3804 5.382664 TGGAAGATATTGGAAGGGGTTAC 57.617 43.478 0.00 0.00 0.00 2.50
1843 3805 5.043762 TGGAAGATATTGGAAGGGGTTACT 58.956 41.667 0.00 0.00 0.00 2.24
1844 3806 5.494706 TGGAAGATATTGGAAGGGGTTACTT 59.505 40.000 0.00 0.00 0.00 2.24
1845 3807 6.062749 GGAAGATATTGGAAGGGGTTACTTC 58.937 44.000 0.00 0.00 44.74 3.01
1846 3808 6.126449 GGAAGATATTGGAAGGGGTTACTTCT 60.126 42.308 0.00 0.00 44.82 2.85
1847 3809 7.072076 GGAAGATATTGGAAGGGGTTACTTCTA 59.928 40.741 0.00 0.00 44.82 2.10
1848 3810 8.401955 AAGATATTGGAAGGGGTTACTTCTAA 57.598 34.615 7.10 7.10 46.97 2.10
1854 3816 8.401955 TTGGAAGGGGTTACTTCTAATATCTT 57.598 34.615 5.99 0.00 44.82 2.40
1855 3817 8.030913 TGGAAGGGGTTACTTCTAATATCTTC 57.969 38.462 5.99 0.00 44.82 2.87
1856 3818 7.072076 TGGAAGGGGTTACTTCTAATATCTTCC 59.928 40.741 0.00 0.00 44.82 3.46
1857 3819 7.072076 GGAAGGGGTTACTTCTAATATCTTCCA 59.928 40.741 0.00 0.00 44.82 3.53
1858 3820 8.582891 AAGGGGTTACTTCTAATATCTTCCAT 57.417 34.615 0.00 0.00 0.00 3.41
1859 3821 8.582891 AGGGGTTACTTCTAATATCTTCCATT 57.417 34.615 0.00 0.00 0.00 3.16
1860 3822 8.661345 AGGGGTTACTTCTAATATCTTCCATTC 58.339 37.037 0.00 0.00 0.00 2.67
1861 3823 8.661345 GGGGTTACTTCTAATATCTTCCATTCT 58.339 37.037 0.00 0.00 0.00 2.40
1862 3824 9.713713 GGGTTACTTCTAATATCTTCCATTCTC 57.286 37.037 0.00 0.00 0.00 2.87
1866 3828 8.900983 ACTTCTAATATCTTCCATTCTCTTGC 57.099 34.615 0.00 0.00 0.00 4.01
1867 3829 7.655328 ACTTCTAATATCTTCCATTCTCTTGCG 59.345 37.037 0.00 0.00 0.00 4.85
1868 3830 6.459066 TCTAATATCTTCCATTCTCTTGCGG 58.541 40.000 0.00 0.00 0.00 5.69
1869 3831 4.963318 ATATCTTCCATTCTCTTGCGGA 57.037 40.909 0.00 0.00 0.00 5.54
1870 3832 3.634397 ATCTTCCATTCTCTTGCGGAA 57.366 42.857 0.00 0.00 36.17 4.30
1873 3835 3.634397 TTCCATTCTCTTGCGGAAGAT 57.366 42.857 20.23 2.34 37.58 2.40
1874 3836 4.753516 TTCCATTCTCTTGCGGAAGATA 57.246 40.909 20.23 10.36 37.58 1.98
1875 3837 4.963318 TCCATTCTCTTGCGGAAGATAT 57.037 40.909 20.23 13.24 37.58 1.63
1876 3838 5.296151 TCCATTCTCTTGCGGAAGATATT 57.704 39.130 20.23 6.72 37.58 1.28
1877 3839 6.419484 TCCATTCTCTTGCGGAAGATATTA 57.581 37.500 20.23 6.27 37.58 0.98
1878 3840 6.459066 TCCATTCTCTTGCGGAAGATATTAG 58.541 40.000 20.23 8.12 37.58 1.73
1879 3841 6.267699 TCCATTCTCTTGCGGAAGATATTAGA 59.732 38.462 20.23 10.42 37.58 2.10
1880 3842 6.931281 CCATTCTCTTGCGGAAGATATTAGAA 59.069 38.462 20.23 18.13 37.58 2.10
1881 3843 7.117523 CCATTCTCTTGCGGAAGATATTAGAAG 59.882 40.741 20.23 11.91 37.58 2.85
1882 3844 6.716934 TCTCTTGCGGAAGATATTAGAAGT 57.283 37.500 20.23 0.00 37.58 3.01
2097 4060 4.406069 CACGTCCATCAACATAGCAAAAG 58.594 43.478 0.00 0.00 0.00 2.27
2250 4213 1.807573 GCGCTCCTCTTCCGAACTG 60.808 63.158 0.00 0.00 0.00 3.16
2303 4266 0.388134 ACGCGTGTGATGTGGACTAC 60.388 55.000 12.93 0.00 0.00 2.73
2330 4293 3.497942 GGGGCGATGTTATGGTCCTTATT 60.498 47.826 0.00 0.00 32.83 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.764547 CCGAGGGAGGGAGGGAAC 60.765 72.222 0.00 0.00 0.00 3.62
8 9 4.798682 GCCGAGGGAGGGAGGGAA 62.799 72.222 0.00 0.00 0.00 3.97
32 33 3.625853 TCTGATGGTCAAAAACACACCA 58.374 40.909 0.00 0.00 44.36 4.17
33 34 4.853924 ATCTGATGGTCAAAAACACACC 57.146 40.909 0.00 0.00 0.00 4.16
83 84 4.083110 GGAATCCATGACAACACTGAACTG 60.083 45.833 0.00 0.00 0.00 3.16
110 111 1.014044 CGTTGGTGTCGTCATCCCTG 61.014 60.000 0.00 0.00 0.00 4.45
114 115 1.005394 ACCCGTTGGTGTCGTCATC 60.005 57.895 0.00 0.00 45.58 2.92
115 116 3.144285 ACCCGTTGGTGTCGTCAT 58.856 55.556 0.00 0.00 45.58 3.06
136 137 4.398358 GCTATATGACCGGAGTAGCATACA 59.602 45.833 9.46 0.00 46.26 2.29
184 185 1.865788 GCATGGTTTTCCGAGCAGCA 61.866 55.000 0.00 0.00 44.36 4.41
188 189 0.810648 TCATGCATGGTTTTCCGAGC 59.189 50.000 25.97 0.00 44.36 5.03
199 200 1.179152 TCAGTGGCCTTTCATGCATG 58.821 50.000 21.07 21.07 0.00 4.06
200 201 1.754803 CATCAGTGGCCTTTCATGCAT 59.245 47.619 3.32 0.00 0.00 3.96
201 202 1.179152 CATCAGTGGCCTTTCATGCA 58.821 50.000 3.32 0.00 0.00 3.96
202 203 0.458669 CCATCAGTGGCCTTTCATGC 59.541 55.000 3.32 0.00 39.01 4.06
217 218 2.907892 TCTCCCCTATCACCATCCATC 58.092 52.381 0.00 0.00 0.00 3.51
235 236 5.766590 TCCTTCTCCTTTGGTTCTTTTTCT 58.233 37.500 0.00 0.00 0.00 2.52
236 237 6.465439 TTCCTTCTCCTTTGGTTCTTTTTC 57.535 37.500 0.00 0.00 0.00 2.29
237 238 6.127054 CCTTTCCTTCTCCTTTGGTTCTTTTT 60.127 38.462 0.00 0.00 0.00 1.94
284 285 5.695851 ACAGCAGGTCAATGAGTTAAAAG 57.304 39.130 0.00 0.00 0.00 2.27
289 290 3.012518 GCATACAGCAGGTCAATGAGTT 58.987 45.455 0.00 0.00 44.79 3.01
348 349 2.105649 GAGGGAGAATGGAACTGGGATC 59.894 54.545 0.00 0.00 0.00 3.36
353 354 1.407989 GGCAGAGGGAGAATGGAACTG 60.408 57.143 0.00 0.00 0.00 3.16
354 355 0.915364 GGCAGAGGGAGAATGGAACT 59.085 55.000 0.00 0.00 0.00 3.01
355 356 0.462759 CGGCAGAGGGAGAATGGAAC 60.463 60.000 0.00 0.00 0.00 3.62
356 357 0.909610 ACGGCAGAGGGAGAATGGAA 60.910 55.000 0.00 0.00 0.00 3.53
357 358 1.306141 ACGGCAGAGGGAGAATGGA 60.306 57.895 0.00 0.00 0.00 3.41
358 359 1.144936 GACGGCAGAGGGAGAATGG 59.855 63.158 0.00 0.00 0.00 3.16
359 360 1.227089 CGACGGCAGAGGGAGAATG 60.227 63.158 0.00 0.00 0.00 2.67
360 361 1.258445 AACGACGGCAGAGGGAGAAT 61.258 55.000 0.00 0.00 0.00 2.40
361 362 0.609957 TAACGACGGCAGAGGGAGAA 60.610 55.000 0.00 0.00 0.00 2.87
362 363 1.001764 TAACGACGGCAGAGGGAGA 60.002 57.895 0.00 0.00 0.00 3.71
363 364 1.139095 GTAACGACGGCAGAGGGAG 59.861 63.158 0.00 0.00 0.00 4.30
364 365 2.345760 GGTAACGACGGCAGAGGGA 61.346 63.158 0.00 0.00 0.00 4.20
365 366 1.885163 AAGGTAACGACGGCAGAGGG 61.885 60.000 0.00 0.00 46.39 4.30
366 367 0.813184 TAAGGTAACGACGGCAGAGG 59.187 55.000 0.00 0.00 46.39 3.69
367 368 1.200716 TGTAAGGTAACGACGGCAGAG 59.799 52.381 0.00 0.00 46.39 3.35
368 369 1.246649 TGTAAGGTAACGACGGCAGA 58.753 50.000 0.00 0.00 46.39 4.26
369 370 2.190981 GATGTAAGGTAACGACGGCAG 58.809 52.381 0.00 0.00 46.39 4.85
370 371 1.135024 GGATGTAAGGTAACGACGGCA 60.135 52.381 0.00 0.00 46.39 5.69
371 372 1.135024 TGGATGTAAGGTAACGACGGC 60.135 52.381 0.00 0.00 46.39 5.68
372 373 2.925563 GTTGGATGTAAGGTAACGACGG 59.074 50.000 0.00 0.00 46.39 4.79
373 374 3.841643 AGTTGGATGTAAGGTAACGACG 58.158 45.455 0.00 0.00 46.39 5.12
374 375 4.628766 GGAAGTTGGATGTAAGGTAACGAC 59.371 45.833 0.00 0.00 46.39 4.34
375 376 4.529377 AGGAAGTTGGATGTAAGGTAACGA 59.471 41.667 0.00 0.00 46.39 3.85
376 377 4.828829 AGGAAGTTGGATGTAAGGTAACG 58.171 43.478 0.00 0.00 46.39 3.18
377 378 6.002082 ACAAGGAAGTTGGATGTAAGGTAAC 58.998 40.000 0.00 0.00 40.90 2.50
378 379 6.043938 AGACAAGGAAGTTGGATGTAAGGTAA 59.956 38.462 0.00 0.00 40.90 2.85
379 380 5.546499 AGACAAGGAAGTTGGATGTAAGGTA 59.454 40.000 0.00 0.00 40.90 3.08
380 381 4.351111 AGACAAGGAAGTTGGATGTAAGGT 59.649 41.667 0.00 0.00 40.90 3.50
381 382 4.697352 CAGACAAGGAAGTTGGATGTAAGG 59.303 45.833 0.00 0.00 40.90 2.69
382 383 4.154918 GCAGACAAGGAAGTTGGATGTAAG 59.845 45.833 0.00 0.00 40.90 2.34
383 384 4.072131 GCAGACAAGGAAGTTGGATGTAA 58.928 43.478 0.00 0.00 40.90 2.41
384 385 3.674997 GCAGACAAGGAAGTTGGATGTA 58.325 45.455 0.00 0.00 40.90 2.29
385 386 2.508526 GCAGACAAGGAAGTTGGATGT 58.491 47.619 0.00 0.00 40.90 3.06
386 387 1.466167 CGCAGACAAGGAAGTTGGATG 59.534 52.381 0.00 0.00 40.90 3.51
387 388 1.813513 CGCAGACAAGGAAGTTGGAT 58.186 50.000 0.00 0.00 40.90 3.41
436 437 1.169661 AAACAGCGAAACGGGATGCA 61.170 50.000 0.00 0.00 0.00 3.96
439 440 1.737793 GATGAAACAGCGAAACGGGAT 59.262 47.619 0.00 0.00 0.00 3.85
445 446 1.588674 ACACCGATGAAACAGCGAAA 58.411 45.000 10.81 0.00 46.56 3.46
456 457 2.673368 GGTGAAGAAGCTTACACCGATG 59.327 50.000 24.07 0.00 42.20 3.84
479 480 1.580845 CGAGTGAAGGCAGCAAAGGG 61.581 60.000 0.00 0.00 0.00 3.95
518 519 7.094377 GCTTATGAAGACAAACCAGTCCATAAA 60.094 37.037 0.00 0.00 39.34 1.40
522 523 4.072131 GCTTATGAAGACAAACCAGTCCA 58.928 43.478 0.00 0.00 39.34 4.02
526 527 4.418392 GCATGCTTATGAAGACAAACCAG 58.582 43.478 11.37 0.00 0.00 4.00
529 530 3.429085 CGGCATGCTTATGAAGACAAAC 58.571 45.455 18.92 0.00 0.00 2.93
542 543 1.219124 CAGACTACACCGGCATGCT 59.781 57.895 18.92 0.00 0.00 3.79
568 569 8.960591 CCTGTTTCTTCTTTTGTGTGGATATAT 58.039 33.333 0.00 0.00 0.00 0.86
569 570 8.160765 TCCTGTTTCTTCTTTTGTGTGGATATA 58.839 33.333 0.00 0.00 0.00 0.86
570 571 7.004086 TCCTGTTTCTTCTTTTGTGTGGATAT 58.996 34.615 0.00 0.00 0.00 1.63
623 625 5.923684 TGTTTCTTCTTTTGTGTGAACCAAC 59.076 36.000 0.00 0.00 0.00 3.77
624 626 6.090483 TGTTTCTTCTTTTGTGTGAACCAA 57.910 33.333 0.00 0.00 0.00 3.67
639 641 9.719355 AATTATTTTAACCACCCATGTTTCTTC 57.281 29.630 0.00 0.00 0.00 2.87
650 652 9.508642 TTGGGAAATTCAATTATTTTAACCACC 57.491 29.630 0.00 0.00 31.67 4.61
672 674 4.935352 TTTCACCACTCATTCTTTTGGG 57.065 40.909 0.00 0.00 33.00 4.12
673 675 9.143631 GATTATTTTCACCACTCATTCTTTTGG 57.856 33.333 0.00 0.00 35.06 3.28
720 744 3.536956 AAACGACGGATCATGGTATGT 57.463 42.857 0.00 0.00 0.00 2.29
721 745 4.617959 AGTAAACGACGGATCATGGTATG 58.382 43.478 0.00 0.00 0.00 2.39
722 746 4.931661 AGTAAACGACGGATCATGGTAT 57.068 40.909 0.00 0.00 0.00 2.73
723 747 4.082081 ACAAGTAAACGACGGATCATGGTA 60.082 41.667 0.00 0.00 0.00 3.25
729 753 4.387862 ACATGAACAAGTAAACGACGGATC 59.612 41.667 0.00 0.00 0.00 3.36
734 758 3.898361 GCGAACATGAACAAGTAAACGAC 59.102 43.478 0.00 0.00 0.00 4.34
736 760 3.223157 GGCGAACATGAACAAGTAAACG 58.777 45.455 0.00 0.00 0.00 3.60
741 765 2.851263 TAGGGCGAACATGAACAAGT 57.149 45.000 0.00 0.00 0.00 3.16
749 773 3.117888 AGGAAATGACATAGGGCGAACAT 60.118 43.478 0.00 0.00 0.00 2.71
771 795 8.812513 ATGATGGATAAAAGACACTGATTTGA 57.187 30.769 0.00 0.00 0.00 2.69
795 819 8.670521 ATTCAAGAGGAAAAAGGAAACCATAT 57.329 30.769 0.00 0.00 39.39 1.78
796 820 8.491045 AATTCAAGAGGAAAAAGGAAACCATA 57.509 30.769 0.00 0.00 39.39 2.74
797 821 7.379059 AATTCAAGAGGAAAAAGGAAACCAT 57.621 32.000 0.00 0.00 39.39 3.55
798 822 6.806668 AATTCAAGAGGAAAAAGGAAACCA 57.193 33.333 0.00 0.00 39.39 3.67
799 823 8.807118 AGATAATTCAAGAGGAAAAAGGAAACC 58.193 33.333 0.00 0.00 39.39 3.27
833 859 5.351189 GCCATTCTTGCGGTTTGATAAAAAT 59.649 36.000 0.00 0.00 0.00 1.82
834 860 4.688413 GCCATTCTTGCGGTTTGATAAAAA 59.312 37.500 0.00 0.00 0.00 1.94
839 865 1.474077 GAGCCATTCTTGCGGTTTGAT 59.526 47.619 0.00 0.00 0.00 2.57
840 866 0.881118 GAGCCATTCTTGCGGTTTGA 59.119 50.000 0.00 0.00 0.00 2.69
841 867 0.597568 TGAGCCATTCTTGCGGTTTG 59.402 50.000 0.00 0.00 0.00 2.93
842 868 1.203052 CATGAGCCATTCTTGCGGTTT 59.797 47.619 0.00 0.00 0.00 3.27
843 869 0.813184 CATGAGCCATTCTTGCGGTT 59.187 50.000 0.00 0.00 0.00 4.44
845 871 0.379669 GACATGAGCCATTCTTGCGG 59.620 55.000 0.00 0.00 35.04 5.69
847 873 1.202268 GCAGACATGAGCCATTCTTGC 60.202 52.381 0.00 0.00 35.04 4.01
848 874 2.089201 TGCAGACATGAGCCATTCTTG 58.911 47.619 0.00 0.00 37.09 3.02
893 921 9.981460 AGGAAATAGTGTGAAATTAGGAAGAAT 57.019 29.630 0.00 0.00 0.00 2.40
930 958 3.128242 GTGCATTCAGAAACCTGGATCTG 59.872 47.826 20.69 20.69 43.51 2.90
963 991 1.963515 GTTGTTGCTGATGTTTCCCCT 59.036 47.619 0.00 0.00 0.00 4.79
988 1016 2.597340 CTCCATGGGATTGCGGGT 59.403 61.111 13.02 0.00 0.00 5.28
1017 1045 2.434884 GCCAGTCGCAAGCTAGCA 60.435 61.111 18.83 0.00 37.47 3.49
1021 1049 2.907897 GATACCGCCAGTCGCAAGCT 62.908 60.000 0.00 0.00 37.30 3.74
1041 1069 3.520721 TGATGAGCTCCTTCAAGATTGGA 59.479 43.478 12.15 0.00 0.00 3.53
1047 1075 4.332268 GCTTTAGTGATGAGCTCCTTCAAG 59.668 45.833 12.15 9.48 33.72 3.02
1075 1103 4.134563 GTCAAGTCAACACCAAGGTATGT 58.865 43.478 0.00 0.00 0.00 2.29
1076 1104 3.186409 CGTCAAGTCAACACCAAGGTATG 59.814 47.826 0.00 0.00 0.00 2.39
1077 1105 3.399330 CGTCAAGTCAACACCAAGGTAT 58.601 45.455 0.00 0.00 0.00 2.73
1078 1106 2.828877 CGTCAAGTCAACACCAAGGTA 58.171 47.619 0.00 0.00 0.00 3.08
1079 1107 1.663695 CGTCAAGTCAACACCAAGGT 58.336 50.000 0.00 0.00 0.00 3.50
1080 1108 0.307760 GCGTCAAGTCAACACCAAGG 59.692 55.000 0.00 0.00 0.00 3.61
1081 1109 0.042188 CGCGTCAAGTCAACACCAAG 60.042 55.000 0.00 0.00 0.00 3.61
1082 1110 0.741574 ACGCGTCAAGTCAACACCAA 60.742 50.000 5.58 0.00 0.00 3.67
1083 1111 1.153529 ACGCGTCAAGTCAACACCA 60.154 52.632 5.58 0.00 0.00 4.17
1084 1112 1.149361 TCACGCGTCAAGTCAACACC 61.149 55.000 9.86 0.00 0.00 4.16
1085 1113 0.229753 CTCACGCGTCAAGTCAACAC 59.770 55.000 9.86 0.00 0.00 3.32
1086 1114 1.487452 GCTCACGCGTCAAGTCAACA 61.487 55.000 9.86 0.00 0.00 3.33
1087 1115 1.201825 GCTCACGCGTCAAGTCAAC 59.798 57.895 9.86 0.00 0.00 3.18
1088 1116 0.939577 GAGCTCACGCGTCAAGTCAA 60.940 55.000 9.86 0.00 42.32 3.18
1089 1117 1.371758 GAGCTCACGCGTCAAGTCA 60.372 57.895 9.86 0.00 42.32 3.41
1090 1118 2.089349 GGAGCTCACGCGTCAAGTC 61.089 63.158 17.19 9.94 42.32 3.01
1091 1119 2.049063 GGAGCTCACGCGTCAAGT 60.049 61.111 17.19 0.86 42.32 3.16
1092 1120 1.416813 GATGGAGCTCACGCGTCAAG 61.417 60.000 17.19 11.65 42.32 3.02
1093 1121 1.446099 GATGGAGCTCACGCGTCAA 60.446 57.895 17.19 0.00 42.32 3.18
1094 1122 2.153547 TTGATGGAGCTCACGCGTCA 62.154 55.000 17.19 12.23 42.32 4.35
1095 1123 1.446099 TTGATGGAGCTCACGCGTC 60.446 57.895 17.19 9.69 42.32 5.19
1096 1124 1.738099 GTTGATGGAGCTCACGCGT 60.738 57.895 17.19 5.58 42.32 6.01
1097 1125 1.446792 AGTTGATGGAGCTCACGCG 60.447 57.895 17.19 3.53 42.32 6.01
1098 1126 2.084844 CAGTTGATGGAGCTCACGC 58.915 57.895 17.19 3.99 0.00 5.34
1108 1136 2.026915 TGATGGTGGTCTCCAGTTGATG 60.027 50.000 0.00 0.00 41.05 3.07
1109 1137 2.269023 TGATGGTGGTCTCCAGTTGAT 58.731 47.619 0.00 0.00 41.05 2.57
1126 1154 0.391661 AACTCGAACTGCGGCATGAT 60.392 50.000 1.75 0.00 41.33 2.45
1193 1221 2.848694 TCTTTGAGCTCCTGGATCCATT 59.151 45.455 16.63 0.00 0.00 3.16
1203 1231 0.603975 ACAAGGCGTCTTTGAGCTCC 60.604 55.000 12.15 0.00 0.00 4.70
1249 1277 4.024809 GCGCTTGAGAAAGTTGTACTCTTT 60.025 41.667 0.00 13.47 37.75 2.52
1252 1280 2.800544 TGCGCTTGAGAAAGTTGTACTC 59.199 45.455 9.73 0.00 0.00 2.59
1255 1283 3.548014 GCTTTGCGCTTGAGAAAGTTGTA 60.548 43.478 9.73 0.00 35.14 2.41
1256 1284 2.796032 GCTTTGCGCTTGAGAAAGTTGT 60.796 45.455 9.73 0.00 35.14 3.32
1258 1286 1.405105 TGCTTTGCGCTTGAGAAAGTT 59.595 42.857 9.73 0.00 40.11 2.66
1259 1287 1.024271 TGCTTTGCGCTTGAGAAAGT 58.976 45.000 9.73 0.00 40.11 2.66
1260 1288 2.124011 TTGCTTTGCGCTTGAGAAAG 57.876 45.000 9.73 10.90 40.11 2.62
1261 1289 2.462889 CTTTGCTTTGCGCTTGAGAAA 58.537 42.857 9.73 1.45 40.11 2.52
1262 1290 1.269206 CCTTTGCTTTGCGCTTGAGAA 60.269 47.619 9.73 0.00 40.11 2.87
1263 1291 0.311790 CCTTTGCTTTGCGCTTGAGA 59.688 50.000 9.73 0.00 40.11 3.27
1264 1292 0.665369 CCCTTTGCTTTGCGCTTGAG 60.665 55.000 9.73 4.84 40.11 3.02
1265 1293 1.363443 CCCTTTGCTTTGCGCTTGA 59.637 52.632 9.73 0.00 40.11 3.02
1267 1295 2.029518 GCCCTTTGCTTTGCGCTT 59.970 55.556 9.73 0.00 40.11 4.68
1268 1296 2.704342 CTTGCCCTTTGCTTTGCGCT 62.704 55.000 9.73 0.00 42.00 5.92
1269 1297 2.280052 TTGCCCTTTGCTTTGCGC 60.280 55.556 0.00 0.00 42.00 6.09
1270 1298 0.249405 TTCTTGCCCTTTGCTTTGCG 60.249 50.000 0.00 0.00 42.00 4.85
1271 1299 1.505425 CTTCTTGCCCTTTGCTTTGC 58.495 50.000 0.00 0.00 42.00 3.68
1272 1300 1.688197 TCCTTCTTGCCCTTTGCTTTG 59.312 47.619 0.00 0.00 42.00 2.77
1274 1302 2.315720 ATCCTTCTTGCCCTTTGCTT 57.684 45.000 0.00 0.00 42.00 3.91
1275 1303 2.174360 GAATCCTTCTTGCCCTTTGCT 58.826 47.619 0.00 0.00 42.00 3.91
1276 1304 1.205655 GGAATCCTTCTTGCCCTTTGC 59.794 52.381 0.00 0.00 41.77 3.68
1278 1306 2.291865 GGAGGAATCCTTCTTGCCCTTT 60.292 50.000 2.09 0.00 31.76 3.11
1279 1307 1.286257 GGAGGAATCCTTCTTGCCCTT 59.714 52.381 2.09 0.00 31.76 3.95
1280 1308 0.922626 GGAGGAATCCTTCTTGCCCT 59.077 55.000 2.09 0.00 31.76 5.19
1281 1309 0.625849 TGGAGGAATCCTTCTTGCCC 59.374 55.000 9.35 2.27 31.76 5.36
1285 2858 2.716424 TGTTGGTGGAGGAATCCTTCTT 59.284 45.455 9.35 0.00 31.76 2.52
1287 2860 2.040412 AGTGTTGGTGGAGGAATCCTTC 59.960 50.000 2.09 0.55 31.76 3.46
1289 2862 1.352352 CAGTGTTGGTGGAGGAATCCT 59.648 52.381 0.00 0.00 36.03 3.24
1290 2863 1.826385 CAGTGTTGGTGGAGGAATCC 58.174 55.000 0.00 0.00 0.00 3.01
1291 2864 1.168714 GCAGTGTTGGTGGAGGAATC 58.831 55.000 0.00 0.00 0.00 2.52
1294 2867 0.550914 AAAGCAGTGTTGGTGGAGGA 59.449 50.000 0.00 0.00 34.72 3.71
1297 2870 2.023673 CTTCAAAGCAGTGTTGGTGGA 58.976 47.619 0.00 0.00 34.72 4.02
1310 2883 0.606604 AGCATGCCAAGGCTTCAAAG 59.393 50.000 15.66 0.00 41.66 2.77
1313 2886 1.341285 ACATAGCATGCCAAGGCTTCA 60.341 47.619 15.66 0.00 41.66 3.02
1315 2888 1.396653 GACATAGCATGCCAAGGCTT 58.603 50.000 15.66 2.83 41.66 4.35
1319 2892 0.585357 GCTCGACATAGCATGCCAAG 59.415 55.000 15.66 6.70 42.30 3.61
1320 2893 2.694065 GCTCGACATAGCATGCCAA 58.306 52.632 15.66 2.91 42.30 4.52
1321 2894 4.443857 GCTCGACATAGCATGCCA 57.556 55.556 15.66 0.00 42.30 4.92
1327 2900 1.594862 GGACAACATGCTCGACATAGC 59.405 52.381 0.00 0.00 43.08 2.97
1329 2902 3.326836 TTGGACAACATGCTCGACATA 57.673 42.857 0.00 0.00 36.64 2.29
1330 2903 2.183478 TTGGACAACATGCTCGACAT 57.817 45.000 0.00 0.00 40.66 3.06
1331 2904 2.076100 GATTGGACAACATGCTCGACA 58.924 47.619 0.00 0.00 0.00 4.35
1332 2905 2.094894 CAGATTGGACAACATGCTCGAC 59.905 50.000 0.00 0.00 0.00 4.20
1335 2908 2.415090 GCACAGATTGGACAACATGCTC 60.415 50.000 0.00 0.00 0.00 4.26
1336 2909 1.542915 GCACAGATTGGACAACATGCT 59.457 47.619 0.00 0.00 0.00 3.79
1337 2910 1.403249 GGCACAGATTGGACAACATGC 60.403 52.381 0.00 0.00 0.00 4.06
1338 2911 1.203052 GGGCACAGATTGGACAACATG 59.797 52.381 0.00 0.00 0.00 3.21
1340 2913 0.888736 CGGGCACAGATTGGACAACA 60.889 55.000 0.00 0.00 0.00 3.33
1342 2915 1.303236 CCGGGCACAGATTGGACAA 60.303 57.895 0.00 0.00 0.00 3.18
1343 2916 2.184020 CTCCGGGCACAGATTGGACA 62.184 60.000 0.00 0.00 0.00 4.02
1344 2917 1.450312 CTCCGGGCACAGATTGGAC 60.450 63.158 0.00 0.00 0.00 4.02
1345 2918 1.198094 TTCTCCGGGCACAGATTGGA 61.198 55.000 0.00 0.00 0.00 3.53
1347 2920 0.321564 TGTTCTCCGGGCACAGATTG 60.322 55.000 0.00 0.00 0.00 2.67
1348 2921 0.036010 CTGTTCTCCGGGCACAGATT 60.036 55.000 18.58 0.00 40.43 2.40
1349 2922 0.904865 TCTGTTCTCCGGGCACAGAT 60.905 55.000 20.80 0.00 41.60 2.90
1351 2924 0.250295 TTTCTGTTCTCCGGGCACAG 60.250 55.000 17.73 17.73 39.51 3.66
1352 2925 0.250295 CTTTCTGTTCTCCGGGCACA 60.250 55.000 0.00 0.90 0.00 4.57
1353 2926 1.578206 GCTTTCTGTTCTCCGGGCAC 61.578 60.000 0.00 0.00 0.00 5.01
1354 2927 1.302511 GCTTTCTGTTCTCCGGGCA 60.303 57.895 0.00 0.00 0.00 5.36
1355 2928 0.249398 TAGCTTTCTGTTCTCCGGGC 59.751 55.000 0.00 0.00 0.00 6.13
1356 2929 1.275291 TGTAGCTTTCTGTTCTCCGGG 59.725 52.381 0.00 0.00 0.00 5.73
1357 2930 2.743636 TGTAGCTTTCTGTTCTCCGG 57.256 50.000 0.00 0.00 0.00 5.14
1358 2931 4.093556 GGAAATGTAGCTTTCTGTTCTCCG 59.906 45.833 0.00 0.00 35.81 4.63
1359 2932 4.093556 CGGAAATGTAGCTTTCTGTTCTCC 59.906 45.833 0.00 0.00 36.95 3.71
1363 2936 2.488153 GCCGGAAATGTAGCTTTCTGTT 59.512 45.455 5.05 0.00 39.05 3.16
1364 2937 2.084546 GCCGGAAATGTAGCTTTCTGT 58.915 47.619 5.05 0.00 39.05 3.41
1366 2939 2.633488 GAGCCGGAAATGTAGCTTTCT 58.367 47.619 5.05 0.00 35.23 2.52
1368 2941 1.282157 AGGAGCCGGAAATGTAGCTTT 59.718 47.619 5.05 0.00 35.23 3.51
1369 2942 0.912486 AGGAGCCGGAAATGTAGCTT 59.088 50.000 5.05 0.00 35.23 3.74
1370 2943 0.466124 GAGGAGCCGGAAATGTAGCT 59.534 55.000 5.05 0.00 38.56 3.32
1371 2944 0.466124 AGAGGAGCCGGAAATGTAGC 59.534 55.000 5.05 0.00 0.00 3.58
1372 2945 2.168521 TGAAGAGGAGCCGGAAATGTAG 59.831 50.000 5.05 0.00 0.00 2.74
1377 3339 1.950484 GCAATGAAGAGGAGCCGGAAA 60.950 52.381 5.05 0.00 0.00 3.13
1386 3348 7.798596 ATACTATTTCACTGCAATGAAGAGG 57.201 36.000 19.68 12.74 39.68 3.69
1392 3354 8.577939 CAAACGAAATACTATTTCACTGCAATG 58.422 33.333 17.81 0.00 0.00 2.82
1393 3355 7.754924 CCAAACGAAATACTATTTCACTGCAAT 59.245 33.333 17.81 0.00 0.00 3.56
1404 3366 8.343168 TCCATGTTTTCCAAACGAAATACTAT 57.657 30.769 0.00 0.00 40.18 2.12
1413 3375 6.254281 ACTATCTTCCATGTTTTCCAAACG 57.746 37.500 0.00 0.00 0.00 3.60
1447 3409 8.902806 CAAAGAAGGCATGGTATTTGAATAGTA 58.097 33.333 0.00 0.00 31.01 1.82
1451 3413 6.855763 TCAAAGAAGGCATGGTATTTGAAT 57.144 33.333 0.00 0.00 34.66 2.57
1471 3433 5.832595 TGTGGATTTCTGATTTCTGGTTCAA 59.167 36.000 0.00 0.00 0.00 2.69
1477 3439 5.159209 GCAACTGTGGATTTCTGATTTCTG 58.841 41.667 0.00 0.00 0.00 3.02
1500 3462 4.222114 GCAATCTCTTCTTGTTTTCCACG 58.778 43.478 0.00 0.00 0.00 4.94
1504 3466 5.471456 TCCTCTGCAATCTCTTCTTGTTTTC 59.529 40.000 0.00 0.00 0.00 2.29
1547 3509 4.141642 ACTTTTGCAGCCAAAGGAGATTTT 60.142 37.500 20.16 0.00 41.58 1.82
1584 3546 6.624423 CACTGATATTTGTTTTCCCCTTCAG 58.376 40.000 0.00 0.00 35.40 3.02
1589 3551 4.799564 TGCACTGATATTTGTTTTCCCC 57.200 40.909 0.00 0.00 0.00 4.81
1591 3553 5.964758 TCCATGCACTGATATTTGTTTTCC 58.035 37.500 0.00 0.00 0.00 3.13
1592 3554 7.814107 TCTTTCCATGCACTGATATTTGTTTTC 59.186 33.333 0.00 0.00 0.00 2.29
1620 3582 8.734218 AAGTTGTCGATCTGTATAGTTAGAGA 57.266 34.615 0.00 0.00 32.76 3.10
1626 3588 8.277490 TCACTTAAGTTGTCGATCTGTATAGT 57.723 34.615 5.07 0.00 0.00 2.12
1637 3599 2.069273 CTGGGCTCACTTAAGTTGTCG 58.931 52.381 5.07 0.00 0.00 4.35
1668 3630 7.180229 TGGATCTAACTTCTCATAACTCCACAA 59.820 37.037 0.00 0.00 0.00 3.33
1670 3632 6.981559 GTGGATCTAACTTCTCATAACTCCAC 59.018 42.308 0.00 0.00 41.30 4.02
1714 3676 7.936301 ACCTTTTGGAAATAAGCTGCAATAAAA 59.064 29.630 1.02 0.00 44.07 1.52
1732 3694 4.023193 GGTGTCATACTTGTGACCTTTTGG 60.023 45.833 3.93 0.00 46.17 3.28
1734 3696 3.813166 CGGTGTCATACTTGTGACCTTTT 59.187 43.478 3.93 0.00 46.17 2.27
1745 3707 1.825474 CCAACTCCTCGGTGTCATACT 59.175 52.381 0.00 0.00 0.00 2.12
1751 3713 0.106149 GTGAACCAACTCCTCGGTGT 59.894 55.000 0.00 0.00 35.08 4.16
1754 3716 1.263356 TAGGTGAACCAACTCCTCGG 58.737 55.000 1.62 0.00 38.89 4.63
1773 3735 2.173569 GACAAATCCCTCTGCTACCCAT 59.826 50.000 0.00 0.00 0.00 4.00
1794 3756 2.836479 TGCTCATGTTGCATGAATCG 57.164 45.000 12.13 3.62 35.31 3.34
1836 3798 9.713713 GAGAATGGAAGATATTAGAAGTAACCC 57.286 37.037 0.00 0.00 0.00 4.11
1840 3802 9.988815 GCAAGAGAATGGAAGATATTAGAAGTA 57.011 33.333 0.00 0.00 0.00 2.24
1841 3803 7.655328 CGCAAGAGAATGGAAGATATTAGAAGT 59.345 37.037 0.00 0.00 43.02 3.01
1842 3804 7.117523 CCGCAAGAGAATGGAAGATATTAGAAG 59.882 40.741 0.00 0.00 43.02 2.85
1843 3805 6.931281 CCGCAAGAGAATGGAAGATATTAGAA 59.069 38.462 0.00 0.00 43.02 2.10
1844 3806 6.267699 TCCGCAAGAGAATGGAAGATATTAGA 59.732 38.462 0.00 0.00 43.02 2.10
1845 3807 6.459066 TCCGCAAGAGAATGGAAGATATTAG 58.541 40.000 0.00 0.00 43.02 1.73
1846 3808 6.419484 TCCGCAAGAGAATGGAAGATATTA 57.581 37.500 0.00 0.00 43.02 0.98
1847 3809 5.296151 TCCGCAAGAGAATGGAAGATATT 57.704 39.130 0.00 0.00 43.02 1.28
1848 3810 4.963318 TCCGCAAGAGAATGGAAGATAT 57.037 40.909 0.00 0.00 43.02 1.63
1849 3811 4.753516 TTCCGCAAGAGAATGGAAGATA 57.246 40.909 0.00 0.00 35.64 1.98
1850 3812 3.634397 TTCCGCAAGAGAATGGAAGAT 57.366 42.857 0.00 0.00 35.64 2.40
1853 3815 3.634397 ATCTTCCGCAAGAGAATGGAA 57.366 42.857 0.00 0.00 42.13 3.53
1854 3816 4.963318 ATATCTTCCGCAAGAGAATGGA 57.037 40.909 0.00 0.00 42.13 3.41
1855 3817 6.459066 TCTAATATCTTCCGCAAGAGAATGG 58.541 40.000 0.00 0.00 42.13 3.16
1856 3818 7.655328 ACTTCTAATATCTTCCGCAAGAGAATG 59.345 37.037 0.00 0.00 42.13 2.67
1857 3819 7.731054 ACTTCTAATATCTTCCGCAAGAGAAT 58.269 34.615 0.00 0.00 42.13 2.40
1858 3820 7.113658 ACTTCTAATATCTTCCGCAAGAGAA 57.886 36.000 0.00 0.00 42.13 2.87
1859 3821 6.716934 ACTTCTAATATCTTCCGCAAGAGA 57.283 37.500 0.00 0.00 42.13 3.10
1860 3822 6.864165 GGTACTTCTAATATCTTCCGCAAGAG 59.136 42.308 0.00 0.00 42.13 2.85
1861 3823 6.239232 GGGTACTTCTAATATCTTCCGCAAGA 60.239 42.308 0.00 0.00 43.06 3.02
1862 3824 5.927115 GGGTACTTCTAATATCTTCCGCAAG 59.073 44.000 0.00 0.00 0.00 4.01
1863 3825 5.601313 AGGGTACTTCTAATATCTTCCGCAA 59.399 40.000 0.00 0.00 0.00 4.85
1864 3826 5.010719 CAGGGTACTTCTAATATCTTCCGCA 59.989 44.000 0.00 0.00 0.00 5.69
1865 3827 5.010820 ACAGGGTACTTCTAATATCTTCCGC 59.989 44.000 0.00 0.00 0.00 5.54
1866 3828 6.651975 ACAGGGTACTTCTAATATCTTCCG 57.348 41.667 0.00 0.00 0.00 4.30
1867 3829 6.706716 GCAACAGGGTACTTCTAATATCTTCC 59.293 42.308 0.00 0.00 0.00 3.46
1868 3830 6.706716 GGCAACAGGGTACTTCTAATATCTTC 59.293 42.308 0.00 0.00 0.00 2.87
1869 3831 6.387220 AGGCAACAGGGTACTTCTAATATCTT 59.613 38.462 0.00 0.00 41.41 2.40
1870 3832 5.905913 AGGCAACAGGGTACTTCTAATATCT 59.094 40.000 0.00 0.00 41.41 1.98
1871 3833 6.176014 AGGCAACAGGGTACTTCTAATATC 57.824 41.667 0.00 0.00 41.41 1.63
1872 3834 6.069615 ACAAGGCAACAGGGTACTTCTAATAT 60.070 38.462 0.00 0.00 41.41 1.28
1873 3835 5.249852 ACAAGGCAACAGGGTACTTCTAATA 59.750 40.000 0.00 0.00 41.41 0.98
1874 3836 4.042934 ACAAGGCAACAGGGTACTTCTAAT 59.957 41.667 0.00 0.00 41.41 1.73
1875 3837 3.393278 ACAAGGCAACAGGGTACTTCTAA 59.607 43.478 0.00 0.00 41.41 2.10
1876 3838 2.976882 ACAAGGCAACAGGGTACTTCTA 59.023 45.455 0.00 0.00 41.41 2.10
1877 3839 1.774856 ACAAGGCAACAGGGTACTTCT 59.225 47.619 0.00 0.00 41.41 2.85
1878 3840 2.152016 GACAAGGCAACAGGGTACTTC 58.848 52.381 0.00 0.00 41.41 3.01
1879 3841 1.202891 GGACAAGGCAACAGGGTACTT 60.203 52.381 0.00 0.00 41.41 2.24
1880 3842 0.400594 GGACAAGGCAACAGGGTACT 59.599 55.000 0.00 0.00 41.41 2.73
1881 3843 0.109723 TGGACAAGGCAACAGGGTAC 59.890 55.000 0.00 0.00 41.41 3.34
1882 3844 0.847373 TTGGACAAGGCAACAGGGTA 59.153 50.000 0.00 0.00 41.41 3.69
2097 4060 4.133796 GTTGCCTGGCCATTCCGC 62.134 66.667 17.53 6.60 37.80 5.54
2250 4213 3.277142 ACCGAATCAAGTAATCCCACC 57.723 47.619 0.00 0.00 0.00 4.61
2303 4266 3.118738 GGACCATAACATCGCCCCTATAG 60.119 52.174 0.00 0.00 0.00 1.31
2330 4293 2.163412 GTGAATTTATTGCGGGTGAGCA 59.837 45.455 0.00 0.00 46.54 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.