Multiple sequence alignment - TraesCS2B01G589100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G589100 chr2B 100.000 2933 0 0 1 2933 775495677 775492745 0.000000e+00 5417.0
1 TraesCS2B01G589100 chr2D 87.650 2583 161 67 391 2908 632083755 632081266 0.000000e+00 2857.0
2 TraesCS2B01G589100 chr2D 100.000 40 0 0 344 383 106123306 106123345 1.130000e-09 75.0
3 TraesCS2B01G589100 chr2A 87.177 2558 175 75 396 2860 759734304 759731807 0.000000e+00 2765.0
4 TraesCS2B01G589100 chr4B 88.943 615 29 9 2349 2933 656073057 656073662 0.000000e+00 723.0
5 TraesCS2B01G589100 chr4B 88.550 131 4 3 2352 2481 612827633 612827513 6.550000e-32 148.0
6 TraesCS2B01G589100 chr4B 87.963 108 8 2 2826 2933 471164351 471164453 3.970000e-24 122.0
7 TraesCS2B01G589100 chr4B 82.474 97 17 0 54 150 37114195 37114099 5.210000e-13 86.1
8 TraesCS2B01G589100 chr4B 97.500 40 1 0 342 381 415901193 415901232 5.250000e-08 69.4
9 TraesCS2B01G589100 chr4A 88.406 621 25 8 2349 2933 661833963 661834572 0.000000e+00 704.0
10 TraesCS2B01G589100 chr3B 88.091 613 33 8 2349 2933 776905700 776906300 0.000000e+00 691.0
11 TraesCS2B01G589100 chr3B 87.765 613 35 8 2349 2933 776887743 776888343 0.000000e+00 680.0
12 TraesCS2B01G589100 chr3B 87.023 131 7 2 2352 2481 757681200 757681079 3.940000e-29 139.0
13 TraesCS2B01G589100 chr3B 86.567 134 7 3 2349 2481 28922976 28923099 1.420000e-28 137.0
14 TraesCS2B01G589100 chr5B 92.500 280 19 1 2654 2933 168084357 168084634 1.640000e-107 399.0
15 TraesCS2B01G589100 chr5B 88.489 139 5 3 2349 2486 533944689 533944817 1.090000e-34 158.0
16 TraesCS2B01G589100 chr5B 87.313 134 7 2 2349 2481 152439463 152439587 8.470000e-31 145.0
17 TraesCS2B01G589100 chr5B 87.023 131 3 4 2352 2481 64786980 64786863 5.100000e-28 135.0
18 TraesCS2B01G589100 chr5B 86.325 117 6 2 2352 2467 699688043 699687936 5.130000e-23 119.0
19 TraesCS2B01G589100 chr5B 97.500 40 1 0 342 381 543565828 543565867 5.250000e-08 69.4
20 TraesCS2B01G589100 chr7B 85.795 352 7 11 2352 2675 152914353 152914017 1.680000e-87 333.0
21 TraesCS2B01G589100 chr7B 83.106 367 10 7 2349 2675 65395266 65395620 1.330000e-73 287.0
22 TraesCS2B01G589100 chr7B 89.313 131 4 3 2352 2481 585076891 585076770 3.910000e-34 156.0
23 TraesCS2B01G589100 chr1B 89.147 129 4 2 2354 2481 603635196 603635077 5.060000e-33 152.0
24 TraesCS2B01G589100 chr1B 88.550 131 5 2 2352 2481 99175118 99174997 1.820000e-32 150.0
25 TraesCS2B01G589100 chrUn 87.500 136 6 3 2352 2486 96568784 96568659 2.360000e-31 147.0
26 TraesCS2B01G589100 chr5A 84.024 169 10 6 1899 2067 624730268 624730419 2.360000e-31 147.0
27 TraesCS2B01G589100 chr6D 86.232 138 5 4 2349 2481 439336355 439336483 1.420000e-28 137.0
28 TraesCS2B01G589100 chr6D 97.500 40 1 0 344 383 316623093 316623054 5.250000e-08 69.4
29 TraesCS2B01G589100 chr7A 100.000 43 0 0 341 383 120998847 120998889 2.420000e-11 80.5
30 TraesCS2B01G589100 chr7D 95.918 49 1 1 335 383 553071787 553071834 8.710000e-11 78.7
31 TraesCS2B01G589100 chr1D 97.778 45 1 0 2791 2835 460324044 460324000 8.710000e-11 78.7
32 TraesCS2B01G589100 chr1D 95.455 44 1 1 340 383 391085031 391084989 5.250000e-08 69.4
33 TraesCS2B01G589100 chr5D 94.000 50 2 1 335 383 334887145 334887194 1.130000e-09 75.0
34 TraesCS2B01G589100 chr3D 95.455 44 1 1 340 383 49025905 49025863 5.250000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G589100 chr2B 775492745 775495677 2932 True 5417 5417 100.000 1 2933 1 chr2B.!!$R1 2932
1 TraesCS2B01G589100 chr2D 632081266 632083755 2489 True 2857 2857 87.650 391 2908 1 chr2D.!!$R1 2517
2 TraesCS2B01G589100 chr2A 759731807 759734304 2497 True 2765 2765 87.177 396 2860 1 chr2A.!!$R1 2464
3 TraesCS2B01G589100 chr4B 656073057 656073662 605 False 723 723 88.943 2349 2933 1 chr4B.!!$F3 584
4 TraesCS2B01G589100 chr4A 661833963 661834572 609 False 704 704 88.406 2349 2933 1 chr4A.!!$F1 584
5 TraesCS2B01G589100 chr3B 776905700 776906300 600 False 691 691 88.091 2349 2933 1 chr3B.!!$F3 584
6 TraesCS2B01G589100 chr3B 776887743 776888343 600 False 680 680 87.765 2349 2933 1 chr3B.!!$F2 584

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
163 164 0.037447 TTGGGATTGATGTCGCCACA 59.963 50.0 0.0 0.0 36.78 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2129 2223 0.39086 CGGGATCGAGCTCTGGATTT 59.609 55.0 12.85 0.0 39.0 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 8.522178 TTTTTAGAAGTTTTTCTTTGAACGCA 57.478 26.923 0.00 0.00 40.79 5.24
35 36 7.734538 TTTAGAAGTTTTTCTTTGAACGCAG 57.265 32.000 0.00 0.00 40.79 5.18
36 37 5.310720 AGAAGTTTTTCTTTGAACGCAGT 57.689 34.783 0.00 0.00 41.90 4.40
37 38 6.431198 AGAAGTTTTTCTTTGAACGCAGTA 57.569 33.333 0.00 0.00 39.71 2.74
38 39 6.255950 AGAAGTTTTTCTTTGAACGCAGTAC 58.744 36.000 0.00 0.00 39.71 2.73
39 40 5.554822 AGTTTTTCTTTGAACGCAGTACA 57.445 34.783 0.00 0.00 45.00 2.90
40 41 5.569413 AGTTTTTCTTTGAACGCAGTACAG 58.431 37.500 0.00 0.00 45.00 2.74
41 42 5.353123 AGTTTTTCTTTGAACGCAGTACAGA 59.647 36.000 0.00 0.00 45.00 3.41
42 43 4.789095 TTTCTTTGAACGCAGTACAGAC 57.211 40.909 0.00 0.00 45.00 3.51
43 44 3.446310 TCTTTGAACGCAGTACAGACA 57.554 42.857 0.00 0.00 45.00 3.41
44 45 3.120792 TCTTTGAACGCAGTACAGACAC 58.879 45.455 0.00 0.00 45.00 3.67
45 46 2.588027 TTGAACGCAGTACAGACACA 57.412 45.000 0.00 0.00 45.00 3.72
46 47 2.588027 TGAACGCAGTACAGACACAA 57.412 45.000 0.00 0.00 45.00 3.33
47 48 2.894902 TGAACGCAGTACAGACACAAA 58.105 42.857 0.00 0.00 45.00 2.83
48 49 3.462982 TGAACGCAGTACAGACACAAAT 58.537 40.909 0.00 0.00 45.00 2.32
49 50 3.493129 TGAACGCAGTACAGACACAAATC 59.507 43.478 0.00 0.00 45.00 2.17
50 51 2.413837 ACGCAGTACAGACACAAATCC 58.586 47.619 0.00 0.00 41.94 3.01
51 52 2.037251 ACGCAGTACAGACACAAATCCT 59.963 45.455 0.00 0.00 41.94 3.24
52 53 3.257375 ACGCAGTACAGACACAAATCCTA 59.743 43.478 0.00 0.00 41.94 2.94
53 54 4.242475 CGCAGTACAGACACAAATCCTAA 58.758 43.478 0.00 0.00 0.00 2.69
54 55 4.870426 CGCAGTACAGACACAAATCCTAAT 59.130 41.667 0.00 0.00 0.00 1.73
55 56 6.040247 CGCAGTACAGACACAAATCCTAATA 58.960 40.000 0.00 0.00 0.00 0.98
56 57 6.019801 CGCAGTACAGACACAAATCCTAATAC 60.020 42.308 0.00 0.00 0.00 1.89
57 58 6.816640 GCAGTACAGACACAAATCCTAATACA 59.183 38.462 0.00 0.00 0.00 2.29
58 59 7.495934 GCAGTACAGACACAAATCCTAATACAT 59.504 37.037 0.00 0.00 0.00 2.29
63 64 8.758829 ACAGACACAAATCCTAATACATAGACA 58.241 33.333 0.00 0.00 33.04 3.41
64 65 9.035607 CAGACACAAATCCTAATACATAGACAC 57.964 37.037 0.00 0.00 33.04 3.67
65 66 8.758829 AGACACAAATCCTAATACATAGACACA 58.241 33.333 0.00 0.00 33.04 3.72
66 67 9.547753 GACACAAATCCTAATACATAGACACAT 57.452 33.333 0.00 0.00 33.04 3.21
73 74 8.990163 TCCTAATACATAGACACATACACTCA 57.010 34.615 0.00 0.00 33.04 3.41
74 75 9.067986 TCCTAATACATAGACACATACACTCAG 57.932 37.037 0.00 0.00 33.04 3.35
75 76 7.810282 CCTAATACATAGACACATACACTCAGC 59.190 40.741 0.00 0.00 33.04 4.26
76 77 6.968263 ATACATAGACACATACACTCAGCT 57.032 37.500 0.00 0.00 0.00 4.24
77 78 5.255710 ACATAGACACATACACTCAGCTC 57.744 43.478 0.00 0.00 0.00 4.09
78 79 4.952957 ACATAGACACATACACTCAGCTCT 59.047 41.667 0.00 0.00 0.00 4.09
79 80 6.122964 ACATAGACACATACACTCAGCTCTA 58.877 40.000 0.00 0.00 0.00 2.43
80 81 6.775142 ACATAGACACATACACTCAGCTCTAT 59.225 38.462 0.00 0.00 0.00 1.98
81 82 5.512753 AGACACATACACTCAGCTCTATG 57.487 43.478 0.00 0.00 0.00 2.23
82 83 5.196695 AGACACATACACTCAGCTCTATGA 58.803 41.667 0.00 0.00 0.00 2.15
83 84 5.654209 AGACACATACACTCAGCTCTATGAA 59.346 40.000 0.00 0.00 0.00 2.57
84 85 6.323482 AGACACATACACTCAGCTCTATGAAT 59.677 38.462 0.00 0.00 0.00 2.57
85 86 6.279123 ACACATACACTCAGCTCTATGAATG 58.721 40.000 0.00 0.00 32.81 2.67
86 87 5.177142 CACATACACTCAGCTCTATGAATGC 59.823 44.000 0.00 0.00 29.63 3.56
87 88 3.900966 ACACTCAGCTCTATGAATGCA 57.099 42.857 0.00 0.00 29.63 3.96
88 89 4.418973 ACACTCAGCTCTATGAATGCAT 57.581 40.909 0.00 0.00 38.54 3.96
89 90 4.127907 ACACTCAGCTCTATGAATGCATG 58.872 43.478 0.00 0.00 35.94 4.06
90 91 4.141779 ACACTCAGCTCTATGAATGCATGA 60.142 41.667 0.00 0.00 35.94 3.07
91 92 4.814771 CACTCAGCTCTATGAATGCATGAA 59.185 41.667 0.00 0.00 35.94 2.57
92 93 5.470437 CACTCAGCTCTATGAATGCATGAAT 59.530 40.000 0.00 0.00 35.94 2.57
93 94 5.470437 ACTCAGCTCTATGAATGCATGAATG 59.530 40.000 0.00 0.00 35.94 2.67
111 112 8.344446 CATGAATGCAAAATCTATCCCTATGA 57.656 34.615 0.00 0.00 0.00 2.15
112 113 8.799367 CATGAATGCAAAATCTATCCCTATGAA 58.201 33.333 0.00 0.00 0.00 2.57
113 114 8.169977 TGAATGCAAAATCTATCCCTATGAAC 57.830 34.615 0.00 0.00 0.00 3.18
114 115 7.779326 TGAATGCAAAATCTATCCCTATGAACA 59.221 33.333 0.00 0.00 0.00 3.18
115 116 8.716674 AATGCAAAATCTATCCCTATGAACAT 57.283 30.769 0.00 0.00 0.00 2.71
116 117 7.750229 TGCAAAATCTATCCCTATGAACATC 57.250 36.000 0.00 0.00 0.00 3.06
117 118 7.520798 TGCAAAATCTATCCCTATGAACATCT 58.479 34.615 0.00 0.00 0.00 2.90
118 119 8.659527 TGCAAAATCTATCCCTATGAACATCTA 58.340 33.333 0.00 0.00 0.00 1.98
119 120 8.940952 GCAAAATCTATCCCTATGAACATCTAC 58.059 37.037 0.00 0.00 0.00 2.59
120 121 9.144747 CAAAATCTATCCCTATGAACATCTACG 57.855 37.037 0.00 0.00 0.00 3.51
121 122 8.651589 AAATCTATCCCTATGAACATCTACGA 57.348 34.615 0.00 0.00 0.00 3.43
122 123 7.873719 ATCTATCCCTATGAACATCTACGAG 57.126 40.000 0.00 0.00 0.00 4.18
123 124 6.780901 TCTATCCCTATGAACATCTACGAGT 58.219 40.000 0.00 0.00 0.00 4.18
124 125 5.713792 ATCCCTATGAACATCTACGAGTG 57.286 43.478 0.00 0.00 0.00 3.51
125 126 4.788679 TCCCTATGAACATCTACGAGTGA 58.211 43.478 0.00 0.00 0.00 3.41
126 127 5.386060 TCCCTATGAACATCTACGAGTGAT 58.614 41.667 0.00 0.00 0.00 3.06
127 128 5.833667 TCCCTATGAACATCTACGAGTGATT 59.166 40.000 0.00 0.00 0.00 2.57
128 129 5.923114 CCCTATGAACATCTACGAGTGATTG 59.077 44.000 0.00 0.00 0.00 2.67
129 130 6.239036 CCCTATGAACATCTACGAGTGATTGA 60.239 42.308 0.00 0.00 0.00 2.57
130 131 6.860539 CCTATGAACATCTACGAGTGATTGAG 59.139 42.308 0.00 0.00 0.00 3.02
131 132 4.424626 TGAACATCTACGAGTGATTGAGC 58.575 43.478 0.00 0.00 0.00 4.26
132 133 3.444703 ACATCTACGAGTGATTGAGCC 57.555 47.619 0.00 0.00 0.00 4.70
133 134 2.223595 ACATCTACGAGTGATTGAGCCG 60.224 50.000 0.00 0.00 0.00 5.52
134 135 1.746470 TCTACGAGTGATTGAGCCGA 58.254 50.000 0.00 0.00 0.00 5.54
135 136 1.400846 TCTACGAGTGATTGAGCCGAC 59.599 52.381 0.00 0.00 0.00 4.79
136 137 1.132453 CTACGAGTGATTGAGCCGACA 59.868 52.381 0.00 0.00 0.00 4.35
137 138 0.388649 ACGAGTGATTGAGCCGACAC 60.389 55.000 0.00 0.00 0.00 3.67
138 139 0.388520 CGAGTGATTGAGCCGACACA 60.389 55.000 0.00 0.00 35.97 3.72
139 140 1.737029 CGAGTGATTGAGCCGACACAT 60.737 52.381 0.00 0.00 35.97 3.21
140 141 1.929836 GAGTGATTGAGCCGACACATC 59.070 52.381 0.00 0.00 35.97 3.06
141 142 1.276138 AGTGATTGAGCCGACACATCA 59.724 47.619 0.00 0.00 35.97 3.07
142 143 2.093288 AGTGATTGAGCCGACACATCAT 60.093 45.455 0.00 0.00 35.97 2.45
143 144 2.286294 GTGATTGAGCCGACACATCATC 59.714 50.000 0.00 0.00 34.05 2.92
144 145 2.169144 TGATTGAGCCGACACATCATCT 59.831 45.455 0.00 0.00 0.00 2.90
145 146 2.768253 TTGAGCCGACACATCATCTT 57.232 45.000 0.00 0.00 0.00 2.40
146 147 2.014335 TGAGCCGACACATCATCTTG 57.986 50.000 0.00 0.00 0.00 3.02
147 148 1.293924 GAGCCGACACATCATCTTGG 58.706 55.000 0.00 0.00 0.00 3.61
148 149 0.107508 AGCCGACACATCATCTTGGG 60.108 55.000 0.00 0.00 0.00 4.12
149 150 0.107703 GCCGACACATCATCTTGGGA 60.108 55.000 0.00 0.00 0.00 4.37
150 151 1.475751 GCCGACACATCATCTTGGGAT 60.476 52.381 0.00 0.00 0.00 3.85
151 152 2.923121 CCGACACATCATCTTGGGATT 58.077 47.619 0.00 0.00 0.00 3.01
152 153 2.615447 CCGACACATCATCTTGGGATTG 59.385 50.000 0.00 0.00 0.00 2.67
153 154 3.534554 CGACACATCATCTTGGGATTGA 58.465 45.455 0.00 0.00 0.00 2.57
154 155 4.132336 CGACACATCATCTTGGGATTGAT 58.868 43.478 0.00 0.00 0.00 2.57
155 156 4.024302 CGACACATCATCTTGGGATTGATG 60.024 45.833 9.85 9.85 39.90 3.07
156 157 4.863548 ACACATCATCTTGGGATTGATGT 58.136 39.130 10.99 10.99 43.20 3.06
157 158 4.885907 ACACATCATCTTGGGATTGATGTC 59.114 41.667 13.27 0.00 42.09 3.06
158 159 4.024302 CACATCATCTTGGGATTGATGTCG 60.024 45.833 13.27 7.29 42.09 4.35
159 160 2.564771 TCATCTTGGGATTGATGTCGC 58.435 47.619 0.00 0.00 40.46 5.19
160 161 1.605710 CATCTTGGGATTGATGTCGCC 59.394 52.381 0.00 0.00 36.32 5.54
161 162 0.617935 TCTTGGGATTGATGTCGCCA 59.382 50.000 0.00 0.00 0.00 5.69
162 163 0.734889 CTTGGGATTGATGTCGCCAC 59.265 55.000 0.00 0.00 0.00 5.01
163 164 0.037447 TTGGGATTGATGTCGCCACA 59.963 50.000 0.00 0.00 36.78 4.17
164 165 0.037447 TGGGATTGATGTCGCCACAA 59.963 50.000 0.00 0.00 35.64 3.33
165 166 1.173043 GGGATTGATGTCGCCACAAA 58.827 50.000 0.00 0.00 35.64 2.83
166 167 1.135402 GGGATTGATGTCGCCACAAAC 60.135 52.381 0.00 0.00 35.64 2.93
167 168 1.465689 GGATTGATGTCGCCACAAACG 60.466 52.381 0.00 0.00 35.64 3.60
168 169 0.109781 ATTGATGTCGCCACAAACGC 60.110 50.000 0.00 0.00 35.64 4.84
169 170 2.123988 TTGATGTCGCCACAAACGCC 62.124 55.000 0.00 0.00 35.64 5.68
170 171 2.281484 ATGTCGCCACAAACGCCT 60.281 55.556 0.00 0.00 35.64 5.52
171 172 1.852067 GATGTCGCCACAAACGCCTT 61.852 55.000 0.00 0.00 35.64 4.35
172 173 1.852067 ATGTCGCCACAAACGCCTTC 61.852 55.000 0.00 0.00 35.64 3.46
173 174 3.342627 TCGCCACAAACGCCTTCG 61.343 61.111 0.00 0.00 42.43 3.79
183 184 2.202440 CGCCTTCGTCGTCGACAT 60.202 61.111 24.13 0.00 46.03 3.06
184 185 1.061411 CGCCTTCGTCGTCGACATA 59.939 57.895 24.13 9.55 46.03 2.29
185 186 0.316772 CGCCTTCGTCGTCGACATAT 60.317 55.000 24.13 0.00 46.03 1.78
186 187 1.396644 GCCTTCGTCGTCGACATATC 58.603 55.000 24.13 6.11 46.03 1.63
187 188 1.925068 GCCTTCGTCGTCGACATATCC 60.925 57.143 24.13 6.41 46.03 2.59
188 189 1.332686 CCTTCGTCGTCGACATATCCA 59.667 52.381 24.13 1.31 46.03 3.41
189 190 2.031069 CCTTCGTCGTCGACATATCCAT 60.031 50.000 24.13 0.00 46.03 3.41
190 191 2.963498 TCGTCGTCGACATATCCATC 57.037 50.000 24.13 0.00 41.35 3.51
191 192 2.490991 TCGTCGTCGACATATCCATCT 58.509 47.619 24.13 0.00 41.35 2.90
192 193 2.876550 TCGTCGTCGACATATCCATCTT 59.123 45.455 24.13 0.00 41.35 2.40
193 194 3.059120 TCGTCGTCGACATATCCATCTTC 60.059 47.826 24.13 0.00 41.35 2.87
194 195 3.058846 CGTCGTCGACATATCCATCTTCT 60.059 47.826 24.13 0.00 39.71 2.85
195 196 4.468643 GTCGTCGACATATCCATCTTCTC 58.531 47.826 20.28 0.00 32.09 2.87
196 197 3.502595 TCGTCGACATATCCATCTTCTCC 59.497 47.826 17.16 0.00 0.00 3.71
197 198 3.366476 CGTCGACATATCCATCTTCTCCC 60.366 52.174 17.16 0.00 0.00 4.30
198 199 3.574396 GTCGACATATCCATCTTCTCCCA 59.426 47.826 11.55 0.00 0.00 4.37
199 200 3.829026 TCGACATATCCATCTTCTCCCAG 59.171 47.826 0.00 0.00 0.00 4.45
200 201 3.576118 CGACATATCCATCTTCTCCCAGT 59.424 47.826 0.00 0.00 0.00 4.00
201 202 4.560311 CGACATATCCATCTTCTCCCAGTG 60.560 50.000 0.00 0.00 0.00 3.66
202 203 4.560739 ACATATCCATCTTCTCCCAGTGA 58.439 43.478 0.00 0.00 0.00 3.41
203 204 4.971282 ACATATCCATCTTCTCCCAGTGAA 59.029 41.667 0.00 0.00 0.00 3.18
204 205 5.610132 ACATATCCATCTTCTCCCAGTGAAT 59.390 40.000 0.00 0.00 0.00 2.57
205 206 6.789457 ACATATCCATCTTCTCCCAGTGAATA 59.211 38.462 0.00 0.00 0.00 1.75
206 207 5.559148 ATCCATCTTCTCCCAGTGAATAC 57.441 43.478 0.00 0.00 0.00 1.89
207 208 4.361783 TCCATCTTCTCCCAGTGAATACA 58.638 43.478 0.00 0.00 0.00 2.29
208 209 4.162320 TCCATCTTCTCCCAGTGAATACAC 59.838 45.833 0.00 0.00 46.24 2.90
220 221 4.458951 GTGAATACACATCATCGGAAGC 57.541 45.455 0.00 0.00 45.32 3.86
221 222 4.122776 GTGAATACACATCATCGGAAGCT 58.877 43.478 0.00 0.00 45.32 3.74
222 223 4.210120 GTGAATACACATCATCGGAAGCTC 59.790 45.833 0.00 0.00 45.32 4.09
223 224 4.100035 TGAATACACATCATCGGAAGCTCT 59.900 41.667 0.00 0.00 0.00 4.09
224 225 2.306341 ACACATCATCGGAAGCTCTG 57.694 50.000 0.00 0.00 0.00 3.35
225 226 1.827344 ACACATCATCGGAAGCTCTGA 59.173 47.619 0.00 0.00 36.02 3.27
226 227 2.234661 ACACATCATCGGAAGCTCTGAA 59.765 45.455 0.00 0.00 35.07 3.02
227 228 2.606725 CACATCATCGGAAGCTCTGAAC 59.393 50.000 0.00 0.00 35.07 3.18
228 229 2.499289 ACATCATCGGAAGCTCTGAACT 59.501 45.455 0.00 0.00 35.07 3.01
229 230 2.662006 TCATCGGAAGCTCTGAACTG 57.338 50.000 0.00 0.00 35.07 3.16
230 231 2.171003 TCATCGGAAGCTCTGAACTGA 58.829 47.619 0.00 0.00 35.07 3.41
231 232 2.562738 TCATCGGAAGCTCTGAACTGAA 59.437 45.455 0.00 0.00 35.07 3.02
232 233 3.196469 TCATCGGAAGCTCTGAACTGAAT 59.804 43.478 0.00 0.00 35.07 2.57
233 234 3.238108 TCGGAAGCTCTGAACTGAATC 57.762 47.619 0.00 0.00 0.00 2.52
234 235 2.093973 TCGGAAGCTCTGAACTGAATCC 60.094 50.000 0.00 0.00 0.00 3.01
235 236 2.354103 CGGAAGCTCTGAACTGAATCCA 60.354 50.000 0.00 0.00 0.00 3.41
236 237 3.679389 GGAAGCTCTGAACTGAATCCAA 58.321 45.455 0.00 0.00 0.00 3.53
237 238 4.074970 GGAAGCTCTGAACTGAATCCAAA 58.925 43.478 0.00 0.00 0.00 3.28
238 239 4.520492 GGAAGCTCTGAACTGAATCCAAAA 59.480 41.667 0.00 0.00 0.00 2.44
239 240 5.010012 GGAAGCTCTGAACTGAATCCAAAAA 59.990 40.000 0.00 0.00 0.00 1.94
266 267 3.435105 GTGCAACAATGTCAAGTCCAA 57.565 42.857 0.00 0.00 36.32 3.53
267 268 3.374745 GTGCAACAATGTCAAGTCCAAG 58.625 45.455 0.00 0.00 36.32 3.61
268 269 3.066621 GTGCAACAATGTCAAGTCCAAGA 59.933 43.478 0.00 0.00 36.32 3.02
269 270 3.066621 TGCAACAATGTCAAGTCCAAGAC 59.933 43.478 0.00 0.00 35.37 3.01
270 271 3.316308 GCAACAATGTCAAGTCCAAGACT 59.684 43.478 0.00 0.00 45.64 3.24
271 272 8.552506 GTGCAACAATGTCAAGTCCAAGACTT 62.553 42.308 4.16 4.16 44.96 3.01
284 285 1.873591 CAAGACTTGAACCTTGGTCGG 59.126 52.381 9.76 0.00 36.90 4.79
285 286 1.129058 AGACTTGAACCTTGGTCGGT 58.871 50.000 0.00 0.00 39.48 4.69
287 288 1.602377 GACTTGAACCTTGGTCGGTTG 59.398 52.381 0.00 0.00 46.85 3.77
288 289 0.951558 CTTGAACCTTGGTCGGTTGG 59.048 55.000 0.00 0.00 46.85 3.77
289 290 0.466555 TTGAACCTTGGTCGGTTGGG 60.467 55.000 0.00 0.00 46.85 4.12
290 291 1.602605 GAACCTTGGTCGGTTGGGG 60.603 63.158 0.00 0.00 46.85 4.96
291 292 2.059345 GAACCTTGGTCGGTTGGGGA 62.059 60.000 0.00 0.00 46.85 4.81
292 293 2.033602 CCTTGGTCGGTTGGGGAC 59.966 66.667 0.00 0.00 0.00 4.46
293 294 2.824880 CCTTGGTCGGTTGGGGACA 61.825 63.158 0.00 0.00 36.12 4.02
305 306 1.770294 TGGGGACAACACTGTTTTCC 58.230 50.000 16.07 16.07 35.30 3.13
306 307 1.286553 TGGGGACAACACTGTTTTCCT 59.713 47.619 21.32 0.00 35.30 3.36
307 308 2.510382 TGGGGACAACACTGTTTTCCTA 59.490 45.455 21.32 11.64 35.30 2.94
308 309 3.053544 TGGGGACAACACTGTTTTCCTAA 60.054 43.478 21.32 10.88 35.30 2.69
309 310 3.955551 GGGGACAACACTGTTTTCCTAAA 59.044 43.478 21.32 0.00 35.30 1.85
310 311 4.587262 GGGGACAACACTGTTTTCCTAAAT 59.413 41.667 21.32 0.00 35.30 1.40
311 312 5.771165 GGGGACAACACTGTTTTCCTAAATA 59.229 40.000 21.32 0.00 35.30 1.40
312 313 6.436218 GGGGACAACACTGTTTTCCTAAATAT 59.564 38.462 21.32 0.00 35.30 1.28
313 314 7.362660 GGGGACAACACTGTTTTCCTAAATATC 60.363 40.741 21.32 7.54 35.30 1.63
314 315 7.362660 GGGACAACACTGTTTTCCTAAATATCC 60.363 40.741 21.32 4.29 35.30 2.59
315 316 7.393515 GGACAACACTGTTTTCCTAAATATCCT 59.606 37.037 16.81 0.00 35.30 3.24
316 317 9.444600 GACAACACTGTTTTCCTAAATATCCTA 57.555 33.333 0.00 0.00 35.30 2.94
317 318 9.227777 ACAACACTGTTTTCCTAAATATCCTAC 57.772 33.333 0.00 0.00 28.57 3.18
318 319 8.674607 CAACACTGTTTTCCTAAATATCCTACC 58.325 37.037 0.00 0.00 0.00 3.18
319 320 7.924541 ACACTGTTTTCCTAAATATCCTACCA 58.075 34.615 0.00 0.00 0.00 3.25
320 321 7.827729 ACACTGTTTTCCTAAATATCCTACCAC 59.172 37.037 0.00 0.00 0.00 4.16
321 322 7.827236 CACTGTTTTCCTAAATATCCTACCACA 59.173 37.037 0.00 0.00 0.00 4.17
322 323 7.827729 ACTGTTTTCCTAAATATCCTACCACAC 59.172 37.037 0.00 0.00 0.00 3.82
323 324 6.819649 TGTTTTCCTAAATATCCTACCACACG 59.180 38.462 0.00 0.00 0.00 4.49
324 325 4.595762 TCCTAAATATCCTACCACACGC 57.404 45.455 0.00 0.00 0.00 5.34
325 326 4.220724 TCCTAAATATCCTACCACACGCT 58.779 43.478 0.00 0.00 0.00 5.07
326 327 4.038763 TCCTAAATATCCTACCACACGCTG 59.961 45.833 0.00 0.00 0.00 5.18
334 335 3.820590 CCACACGCTGGTTCACAA 58.179 55.556 0.00 0.00 34.90 3.33
335 336 2.102554 CCACACGCTGGTTCACAAA 58.897 52.632 0.00 0.00 34.90 2.83
336 337 0.667993 CCACACGCTGGTTCACAAAT 59.332 50.000 0.00 0.00 34.90 2.32
337 338 1.066908 CCACACGCTGGTTCACAAATT 59.933 47.619 0.00 0.00 34.90 1.82
338 339 2.481104 CCACACGCTGGTTCACAAATTT 60.481 45.455 0.00 0.00 34.90 1.82
339 340 3.186119 CACACGCTGGTTCACAAATTTT 58.814 40.909 0.00 0.00 0.00 1.82
340 341 3.616379 CACACGCTGGTTCACAAATTTTT 59.384 39.130 0.00 0.00 0.00 1.94
341 342 4.800993 CACACGCTGGTTCACAAATTTTTA 59.199 37.500 0.00 0.00 0.00 1.52
342 343 5.461737 CACACGCTGGTTCACAAATTTTTAT 59.538 36.000 0.00 0.00 0.00 1.40
343 344 5.689961 ACACGCTGGTTCACAAATTTTTATC 59.310 36.000 0.00 0.00 0.00 1.75
344 345 5.689514 CACGCTGGTTCACAAATTTTTATCA 59.310 36.000 0.00 0.00 0.00 2.15
345 346 5.920273 ACGCTGGTTCACAAATTTTTATCAG 59.080 36.000 0.00 0.00 0.00 2.90
346 347 5.920273 CGCTGGTTCACAAATTTTTATCAGT 59.080 36.000 0.00 0.00 0.00 3.41
347 348 6.420604 CGCTGGTTCACAAATTTTTATCAGTT 59.579 34.615 0.00 0.00 0.00 3.16
348 349 7.042791 CGCTGGTTCACAAATTTTTATCAGTTT 60.043 33.333 0.00 0.00 0.00 2.66
349 350 8.063630 GCTGGTTCACAAATTTTTATCAGTTTG 58.936 33.333 0.00 0.00 37.52 2.93
350 351 9.097257 CTGGTTCACAAATTTTTATCAGTTTGT 57.903 29.630 0.00 0.00 43.36 2.83
351 352 9.092876 TGGTTCACAAATTTTTATCAGTTTGTC 57.907 29.630 0.00 0.00 41.37 3.18
352 353 9.313118 GGTTCACAAATTTTTATCAGTTTGTCT 57.687 29.630 0.00 0.00 41.37 3.41
362 363 9.872757 TTTTTATCAGTTTGTCTAATTCACGTC 57.127 29.630 0.00 0.00 0.00 4.34
363 364 8.827177 TTTATCAGTTTGTCTAATTCACGTCT 57.173 30.769 0.00 0.00 0.00 4.18
364 365 9.917129 TTTATCAGTTTGTCTAATTCACGTCTA 57.083 29.630 0.00 0.00 0.00 2.59
365 366 9.569167 TTATCAGTTTGTCTAATTCACGTCTAG 57.431 33.333 0.00 0.00 0.00 2.43
366 367 7.210718 TCAGTTTGTCTAATTCACGTCTAGA 57.789 36.000 0.00 0.00 0.00 2.43
367 368 7.827701 TCAGTTTGTCTAATTCACGTCTAGAT 58.172 34.615 0.00 0.00 0.00 1.98
368 369 7.755373 TCAGTTTGTCTAATTCACGTCTAGATG 59.245 37.037 10.54 10.54 0.00 2.90
369 370 7.542477 CAGTTTGTCTAATTCACGTCTAGATGT 59.458 37.037 11.99 11.99 0.00 3.06
370 371 8.088981 AGTTTGTCTAATTCACGTCTAGATGTT 58.911 33.333 15.12 3.67 0.00 2.71
371 372 8.709646 GTTTGTCTAATTCACGTCTAGATGTTT 58.290 33.333 15.12 9.87 0.00 2.83
372 373 8.827177 TTGTCTAATTCACGTCTAGATGTTTT 57.173 30.769 15.12 11.28 0.00 2.43
373 374 8.827177 TGTCTAATTCACGTCTAGATGTTTTT 57.173 30.769 15.12 10.96 0.00 1.94
393 394 5.705609 TTTTAAGGATGTGAAAGTGCCTC 57.294 39.130 0.00 0.00 0.00 4.70
394 395 2.206576 AAGGATGTGAAAGTGCCTCC 57.793 50.000 0.00 0.00 0.00 4.30
436 437 4.087182 AGATCCAATCATGCATGGGAATC 58.913 43.478 25.97 19.73 37.31 2.52
487 497 1.193203 CAACTGCATATCGCCGATGAC 59.807 52.381 10.41 0.00 41.33 3.06
513 523 8.561212 CATTTTCCTGATCTGATTTGATCTCTC 58.439 37.037 0.38 0.00 42.30 3.20
519 529 5.424573 TGATCTGATTTGATCTCTCTGGTGT 59.575 40.000 6.15 0.00 42.30 4.16
529 539 2.238646 TCTCTCTGGTGTTGTTGTGGTT 59.761 45.455 0.00 0.00 0.00 3.67
531 541 2.026729 TCTCTGGTGTTGTTGTGGTTGA 60.027 45.455 0.00 0.00 0.00 3.18
540 550 3.080300 TGTTGTGGTTGAGTTTCCAGT 57.920 42.857 0.00 0.00 34.16 4.00
542 552 1.388547 TGTGGTTGAGTTTCCAGTGC 58.611 50.000 0.00 0.00 34.16 4.40
543 553 1.340502 TGTGGTTGAGTTTCCAGTGCA 60.341 47.619 0.00 0.00 34.16 4.57
544 554 1.065551 GTGGTTGAGTTTCCAGTGCAC 59.934 52.381 9.40 9.40 34.16 4.57
547 562 2.479560 GGTTGAGTTTCCAGTGCACAAC 60.480 50.000 21.04 14.31 36.47 3.32
549 564 1.064758 TGAGTTTCCAGTGCACAACCT 60.065 47.619 21.04 2.00 0.00 3.50
555 570 0.037697 CCAGTGCACAACCTACGCTA 60.038 55.000 21.04 0.00 0.00 4.26
563 578 4.142026 TGCACAACCTACGCTATGTAATCT 60.142 41.667 0.00 0.00 31.20 2.40
618 651 8.698973 TTTTACATTAGTCACAATTTCTCCCA 57.301 30.769 0.00 0.00 0.00 4.37
620 653 8.698973 TTACATTAGTCACAATTTCTCCCAAA 57.301 30.769 0.00 0.00 0.00 3.28
625 658 8.877864 TTAGTCACAATTTCTCCCAAATGTAT 57.122 30.769 0.00 0.00 0.00 2.29
626 659 7.396540 AGTCACAATTTCTCCCAAATGTATC 57.603 36.000 0.00 0.00 0.00 2.24
677 710 2.095567 CGGTCAAAGTGCTCATTTCTGG 60.096 50.000 0.00 0.00 0.00 3.86
682 715 1.831580 AGTGCTCATTTCTGGCCTTC 58.168 50.000 3.32 0.00 0.00 3.46
695 728 5.722021 TCTGGCCTTCTTCCAAAATTAAC 57.278 39.130 3.32 0.00 32.41 2.01
717 750 5.132502 ACCAATTAATTCTGGATGATCGCA 58.867 37.500 12.27 0.00 36.49 5.10
718 751 5.593909 ACCAATTAATTCTGGATGATCGCAA 59.406 36.000 12.27 0.00 36.49 4.85
719 752 6.096705 ACCAATTAATTCTGGATGATCGCAAA 59.903 34.615 12.27 0.00 36.49 3.68
720 753 6.418819 CCAATTAATTCTGGATGATCGCAAAC 59.581 38.462 0.00 0.00 34.35 2.93
721 754 5.499139 TTAATTCTGGATGATCGCAAACC 57.501 39.130 0.00 0.00 0.00 3.27
722 755 2.787473 TTCTGGATGATCGCAAACCT 57.213 45.000 0.00 0.00 0.00 3.50
723 756 2.787473 TCTGGATGATCGCAAACCTT 57.213 45.000 0.00 0.00 0.00 3.50
728 761 4.380531 TGGATGATCGCAAACCTTATCTC 58.619 43.478 0.00 0.00 0.00 2.75
780 813 6.717997 GGAGTAATTTTCTTCCAAACTACCCA 59.282 38.462 0.00 0.00 0.00 4.51
798 831 1.069703 CCATGATCGCGATCGCATTTT 60.070 47.619 36.05 19.20 40.63 1.82
803 836 0.525882 TCGCGATCGCATTTTCGGTA 60.526 50.000 36.45 9.51 42.06 4.02
815 848 5.232414 CGCATTTTCGGTAAAACTTCCAAAA 59.768 36.000 0.00 0.00 37.41 2.44
860 896 4.796495 AGAAATGGACGCCGCCCC 62.796 66.667 0.00 0.00 0.00 5.80
882 919 1.304134 CCCCATAAATAGCCCCGCC 60.304 63.158 0.00 0.00 0.00 6.13
899 936 2.438434 CCCAACGCCATCTCCACC 60.438 66.667 0.00 0.00 0.00 4.61
960 998 1.739338 CTCCATTACTCCTCGCCGCT 61.739 60.000 0.00 0.00 0.00 5.52
962 1000 1.437573 CATTACTCCTCGCCGCTCA 59.562 57.895 0.00 0.00 0.00 4.26
963 1001 0.872021 CATTACTCCTCGCCGCTCAC 60.872 60.000 0.00 0.00 0.00 3.51
964 1002 1.038130 ATTACTCCTCGCCGCTCACT 61.038 55.000 0.00 0.00 0.00 3.41
965 1003 1.654954 TTACTCCTCGCCGCTCACTC 61.655 60.000 0.00 0.00 0.00 3.51
967 1005 4.742649 TCCTCGCCGCTCACTCCT 62.743 66.667 0.00 0.00 0.00 3.69
968 1006 4.200283 CCTCGCCGCTCACTCCTC 62.200 72.222 0.00 0.00 0.00 3.71
969 1007 4.544689 CTCGCCGCTCACTCCTCG 62.545 72.222 0.00 0.00 0.00 4.63
972 1010 4.838486 GCCGCTCACTCCTCGTCG 62.838 72.222 0.00 0.00 0.00 5.12
973 1011 4.180946 CCGCTCACTCCTCGTCGG 62.181 72.222 0.00 0.00 0.00 4.79
975 1013 4.838486 GCTCACTCCTCGTCGGCG 62.838 72.222 1.15 1.15 39.92 6.46
1023 1089 2.416432 GGGAAGCTACTCCTCGCGT 61.416 63.158 5.77 0.00 35.63 6.01
1269 1338 4.366684 CACAAGGACCCCTGGGCC 62.367 72.222 7.39 3.95 39.32 5.80
1326 1398 2.898738 CTCATGACGGAGCAGGCT 59.101 61.111 0.00 0.00 0.00 4.58
1356 1428 2.743928 GTCAGGCGCAAGGTGGAG 60.744 66.667 10.83 0.00 38.28 3.86
1470 1542 1.004918 GGTGGTTGAGGAGGTCGTG 60.005 63.158 0.00 0.00 0.00 4.35
1515 1587 2.910479 TGCGTCACCACGGAGTCT 60.910 61.111 0.00 0.00 46.80 3.24
1626 1710 4.537433 GAGCGCGGCATCTCCCTT 62.537 66.667 8.83 0.00 0.00 3.95
1671 1755 1.364901 GGACCAACACTTCGACGGA 59.635 57.895 0.00 0.00 0.00 4.69
1677 1761 1.874345 AACACTTCGACGGAGCCGAT 61.874 55.000 16.83 0.00 42.83 4.18
1943 2033 1.745115 ACCAATGATCGCACCCACG 60.745 57.895 0.00 0.00 0.00 4.94
1948 2042 4.760047 GATCGCACCCACGCACCT 62.760 66.667 0.00 0.00 0.00 4.00
1966 2060 3.327464 CACCTTCAACCCAAAAATCCCAT 59.673 43.478 0.00 0.00 0.00 4.00
1980 2074 6.499106 AAAATCCCATACCAATCCAAATCC 57.501 37.500 0.00 0.00 0.00 3.01
1984 2078 4.961730 TCCCATACCAATCCAAATCCAAAG 59.038 41.667 0.00 0.00 0.00 2.77
2009 2103 6.721571 TTTCTCGGTTGTGTAAAGATCATC 57.278 37.500 0.00 0.00 0.00 2.92
2010 2104 5.400066 TCTCGGTTGTGTAAAGATCATCA 57.600 39.130 0.00 0.00 0.00 3.07
2011 2105 5.977635 TCTCGGTTGTGTAAAGATCATCAT 58.022 37.500 0.00 0.00 0.00 2.45
2032 2126 9.454859 CATCATATCCCCTTAAATTAGTTCTCC 57.545 37.037 0.00 0.00 0.00 3.71
2033 2127 8.814448 TCATATCCCCTTAAATTAGTTCTCCT 57.186 34.615 0.00 0.00 0.00 3.69
2034 2128 9.237706 TCATATCCCCTTAAATTAGTTCTCCTT 57.762 33.333 0.00 0.00 0.00 3.36
2035 2129 9.508642 CATATCCCCTTAAATTAGTTCTCCTTC 57.491 37.037 0.00 0.00 0.00 3.46
2036 2130 7.773099 ATCCCCTTAAATTAGTTCTCCTTCT 57.227 36.000 0.00 0.00 0.00 2.85
2037 2131 7.196637 TCCCCTTAAATTAGTTCTCCTTCTC 57.803 40.000 0.00 0.00 0.00 2.87
2038 2132 6.158169 TCCCCTTAAATTAGTTCTCCTTCTCC 59.842 42.308 0.00 0.00 0.00 3.71
2043 2137 9.594478 CTTAAATTAGTTCTCCTTCTCCTTCTC 57.406 37.037 0.00 0.00 0.00 2.87
2124 2218 2.118313 ACCGCCACATTTAGGTAACC 57.882 50.000 0.00 0.00 34.83 2.85
2128 2222 2.159626 CGCCACATTTAGGTAACCAACG 60.160 50.000 0.00 0.00 37.17 4.10
2129 2223 3.075884 GCCACATTTAGGTAACCAACGA 58.924 45.455 0.00 0.00 37.17 3.85
2146 2240 1.067821 ACGAAATCCAGAGCTCGATCC 59.932 52.381 8.37 1.78 35.34 3.36
2294 2391 3.453988 CCGCTTTGGCCCAAAAGA 58.546 55.556 17.49 0.00 39.12 2.52
2343 2440 0.960861 CCACCTCTTTCCCTTTCGGC 60.961 60.000 0.00 0.00 0.00 5.54
2369 2466 2.677971 GGATCCAACACACGATCCG 58.322 57.895 6.95 0.00 43.81 4.18
2393 2490 4.585879 TGCTTACCACTTAAGTTGGATCC 58.414 43.478 22.90 4.20 39.69 3.36
2394 2491 4.288626 TGCTTACCACTTAAGTTGGATCCT 59.711 41.667 22.90 9.31 39.69 3.24
2395 2492 5.222048 TGCTTACCACTTAAGTTGGATCCTT 60.222 40.000 22.90 1.23 39.69 3.36
2396 2493 5.354513 GCTTACCACTTAAGTTGGATCCTTC 59.645 44.000 22.90 5.98 39.69 3.46
2397 2494 6.697641 TTACCACTTAAGTTGGATCCTTCT 57.302 37.500 22.90 8.32 0.00 2.85
2398 2495 7.580882 GCTTACCACTTAAGTTGGATCCTTCTA 60.581 40.741 22.90 7.31 39.69 2.10
2399 2496 6.051179 ACCACTTAAGTTGGATCCTTCTAC 57.949 41.667 22.90 6.08 0.00 2.59
2400 2497 5.785940 ACCACTTAAGTTGGATCCTTCTACT 59.214 40.000 22.90 8.28 0.00 2.57
2401 2498 6.272558 ACCACTTAAGTTGGATCCTTCTACTT 59.727 38.462 22.90 17.35 33.93 2.24
2432 2538 4.996793 TCCTCTATCCATCCAAGAGAGAG 58.003 47.826 5.63 5.63 45.25 3.20
2481 2588 8.040132 AGAGTCAAAAATTGTTGGTGAATTTCA 58.960 29.630 8.51 0.00 32.94 2.69
2482 2589 8.735692 AGTCAAAAATTGTTGGTGAATTTCAT 57.264 26.923 8.51 0.00 32.94 2.57
2746 2895 0.897863 GGTTGGTGGCTTGGTGCATA 60.898 55.000 0.00 0.00 45.15 3.14
2902 3059 7.162082 GCTAATTATGGTGCTAATACTCCTGT 58.838 38.462 0.00 0.00 0.00 4.00
2914 3073 1.302033 CTCCTGTCAGTGGGTGTGC 60.302 63.158 0.00 0.00 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 8.522178 TGCGTTCAAAGAAAAACTTCTAAAAA 57.478 26.923 0.00 0.00 37.93 1.94
10 11 7.810759 ACTGCGTTCAAAGAAAAACTTCTAAAA 59.189 29.630 0.00 0.00 37.93 1.52
11 12 7.309920 ACTGCGTTCAAAGAAAAACTTCTAAA 58.690 30.769 0.00 0.00 37.93 1.85
12 13 6.848451 ACTGCGTTCAAAGAAAAACTTCTAA 58.152 32.000 0.00 0.00 37.93 2.10
13 14 6.431198 ACTGCGTTCAAAGAAAAACTTCTA 57.569 33.333 0.00 0.00 37.93 2.10
14 15 5.310720 ACTGCGTTCAAAGAAAAACTTCT 57.689 34.783 0.00 0.00 37.93 2.85
15 16 6.025280 TGTACTGCGTTCAAAGAAAAACTTC 58.975 36.000 0.00 0.00 37.93 3.01
16 17 5.945155 TGTACTGCGTTCAAAGAAAAACTT 58.055 33.333 0.00 0.00 40.98 2.66
17 18 5.353123 TCTGTACTGCGTTCAAAGAAAAACT 59.647 36.000 0.00 0.00 0.00 2.66
18 19 5.451342 GTCTGTACTGCGTTCAAAGAAAAAC 59.549 40.000 0.00 0.00 0.00 2.43
19 20 5.122554 TGTCTGTACTGCGTTCAAAGAAAAA 59.877 36.000 0.00 0.00 0.00 1.94
20 21 4.632251 TGTCTGTACTGCGTTCAAAGAAAA 59.368 37.500 0.00 0.00 0.00 2.29
21 22 4.033587 GTGTCTGTACTGCGTTCAAAGAAA 59.966 41.667 0.00 0.00 0.00 2.52
22 23 3.554324 GTGTCTGTACTGCGTTCAAAGAA 59.446 43.478 0.00 0.00 0.00 2.52
23 24 3.120792 GTGTCTGTACTGCGTTCAAAGA 58.879 45.455 0.00 0.00 0.00 2.52
24 25 2.863740 TGTGTCTGTACTGCGTTCAAAG 59.136 45.455 0.00 0.00 0.00 2.77
25 26 2.894902 TGTGTCTGTACTGCGTTCAAA 58.105 42.857 0.00 0.00 0.00 2.69
26 27 2.588027 TGTGTCTGTACTGCGTTCAA 57.412 45.000 0.00 0.00 0.00 2.69
27 28 2.588027 TTGTGTCTGTACTGCGTTCA 57.412 45.000 0.00 0.00 0.00 3.18
28 29 3.120649 GGATTTGTGTCTGTACTGCGTTC 60.121 47.826 0.00 0.00 0.00 3.95
29 30 2.806244 GGATTTGTGTCTGTACTGCGTT 59.194 45.455 0.00 0.00 0.00 4.84
30 31 2.037251 AGGATTTGTGTCTGTACTGCGT 59.963 45.455 0.00 0.00 0.00 5.24
31 32 2.688507 AGGATTTGTGTCTGTACTGCG 58.311 47.619 0.00 0.00 0.00 5.18
32 33 6.816640 TGTATTAGGATTTGTGTCTGTACTGC 59.183 38.462 0.00 0.00 0.00 4.40
33 34 8.948631 ATGTATTAGGATTTGTGTCTGTACTG 57.051 34.615 0.00 0.00 0.00 2.74
37 38 8.758829 TGTCTATGTATTAGGATTTGTGTCTGT 58.241 33.333 0.00 0.00 0.00 3.41
38 39 9.035607 GTGTCTATGTATTAGGATTTGTGTCTG 57.964 37.037 0.00 0.00 0.00 3.51
39 40 8.758829 TGTGTCTATGTATTAGGATTTGTGTCT 58.241 33.333 0.00 0.00 0.00 3.41
40 41 8.942338 TGTGTCTATGTATTAGGATTTGTGTC 57.058 34.615 0.00 0.00 0.00 3.67
47 48 9.588096 TGAGTGTATGTGTCTATGTATTAGGAT 57.412 33.333 0.00 0.00 0.00 3.24
48 49 8.990163 TGAGTGTATGTGTCTATGTATTAGGA 57.010 34.615 0.00 0.00 0.00 2.94
49 50 7.810282 GCTGAGTGTATGTGTCTATGTATTAGG 59.190 40.741 0.00 0.00 0.00 2.69
50 51 8.572185 AGCTGAGTGTATGTGTCTATGTATTAG 58.428 37.037 0.00 0.00 0.00 1.73
51 52 8.465273 AGCTGAGTGTATGTGTCTATGTATTA 57.535 34.615 0.00 0.00 0.00 0.98
52 53 7.286546 AGAGCTGAGTGTATGTGTCTATGTATT 59.713 37.037 0.00 0.00 0.00 1.89
53 54 6.775142 AGAGCTGAGTGTATGTGTCTATGTAT 59.225 38.462 0.00 0.00 0.00 2.29
54 55 6.122964 AGAGCTGAGTGTATGTGTCTATGTA 58.877 40.000 0.00 0.00 0.00 2.29
55 56 4.952957 AGAGCTGAGTGTATGTGTCTATGT 59.047 41.667 0.00 0.00 0.00 2.29
56 57 5.512753 AGAGCTGAGTGTATGTGTCTATG 57.487 43.478 0.00 0.00 0.00 2.23
57 58 7.001073 TCATAGAGCTGAGTGTATGTGTCTAT 58.999 38.462 0.00 0.00 0.00 1.98
58 59 6.357367 TCATAGAGCTGAGTGTATGTGTCTA 58.643 40.000 0.00 0.00 0.00 2.59
59 60 5.196695 TCATAGAGCTGAGTGTATGTGTCT 58.803 41.667 0.00 0.00 0.00 3.41
60 61 5.506686 TCATAGAGCTGAGTGTATGTGTC 57.493 43.478 0.00 0.00 0.00 3.67
61 62 5.921962 TTCATAGAGCTGAGTGTATGTGT 57.078 39.130 0.00 0.00 0.00 3.72
62 63 5.177142 GCATTCATAGAGCTGAGTGTATGTG 59.823 44.000 0.00 0.00 35.83 3.21
63 64 5.163374 TGCATTCATAGAGCTGAGTGTATGT 60.163 40.000 0.00 0.00 35.83 2.29
64 65 5.295152 TGCATTCATAGAGCTGAGTGTATG 58.705 41.667 0.00 0.00 35.83 2.39
65 66 5.541953 TGCATTCATAGAGCTGAGTGTAT 57.458 39.130 0.00 0.00 35.83 2.29
66 67 5.069516 TCATGCATTCATAGAGCTGAGTGTA 59.930 40.000 0.00 0.00 35.83 2.90
67 68 3.900966 TGCATTCATAGAGCTGAGTGT 57.099 42.857 0.00 0.00 35.83 3.55
68 69 4.377897 TCATGCATTCATAGAGCTGAGTG 58.622 43.478 0.00 0.00 36.32 3.51
69 70 4.684484 TCATGCATTCATAGAGCTGAGT 57.316 40.909 0.00 0.00 0.00 3.41
70 71 5.932661 CATTCATGCATTCATAGAGCTGAG 58.067 41.667 0.00 0.00 0.00 3.35
71 72 5.941948 CATTCATGCATTCATAGAGCTGA 57.058 39.130 0.00 0.00 0.00 4.26
86 87 8.344446 TCATAGGGATAGATTTTGCATTCATG 57.656 34.615 0.00 0.00 0.00 3.07
87 88 8.800332 GTTCATAGGGATAGATTTTGCATTCAT 58.200 33.333 0.00 0.00 0.00 2.57
88 89 7.779326 TGTTCATAGGGATAGATTTTGCATTCA 59.221 33.333 0.00 0.00 0.00 2.57
89 90 8.169977 TGTTCATAGGGATAGATTTTGCATTC 57.830 34.615 0.00 0.00 0.00 2.67
90 91 8.716674 ATGTTCATAGGGATAGATTTTGCATT 57.283 30.769 0.00 0.00 0.00 3.56
91 92 8.168725 AGATGTTCATAGGGATAGATTTTGCAT 58.831 33.333 0.00 0.00 0.00 3.96
92 93 7.520798 AGATGTTCATAGGGATAGATTTTGCA 58.479 34.615 0.00 0.00 0.00 4.08
93 94 7.992754 AGATGTTCATAGGGATAGATTTTGC 57.007 36.000 0.00 0.00 0.00 3.68
94 95 9.144747 CGTAGATGTTCATAGGGATAGATTTTG 57.855 37.037 0.00 0.00 0.00 2.44
95 96 9.090103 TCGTAGATGTTCATAGGGATAGATTTT 57.910 33.333 0.00 0.00 0.00 1.82
96 97 8.651589 TCGTAGATGTTCATAGGGATAGATTT 57.348 34.615 0.00 0.00 0.00 2.17
97 98 7.891183 ACTCGTAGATGTTCATAGGGATAGATT 59.109 37.037 0.00 0.00 33.89 2.40
98 99 7.338196 CACTCGTAGATGTTCATAGGGATAGAT 59.662 40.741 0.00 0.00 33.89 1.98
99 100 6.655425 CACTCGTAGATGTTCATAGGGATAGA 59.345 42.308 0.00 0.00 33.89 1.98
100 101 6.655425 TCACTCGTAGATGTTCATAGGGATAG 59.345 42.308 0.00 0.00 33.89 2.08
101 102 6.540083 TCACTCGTAGATGTTCATAGGGATA 58.460 40.000 0.00 0.00 33.89 2.59
102 103 5.386060 TCACTCGTAGATGTTCATAGGGAT 58.614 41.667 0.00 0.00 33.89 3.85
103 104 4.788679 TCACTCGTAGATGTTCATAGGGA 58.211 43.478 0.00 0.00 33.89 4.20
104 105 5.713792 ATCACTCGTAGATGTTCATAGGG 57.286 43.478 0.00 0.00 33.89 3.53
105 106 6.739112 TCAATCACTCGTAGATGTTCATAGG 58.261 40.000 0.00 0.00 33.89 2.57
106 107 6.362016 GCTCAATCACTCGTAGATGTTCATAG 59.638 42.308 0.00 0.00 33.89 2.23
107 108 6.209361 GCTCAATCACTCGTAGATGTTCATA 58.791 40.000 0.00 0.00 33.89 2.15
108 109 5.046529 GCTCAATCACTCGTAGATGTTCAT 58.953 41.667 0.00 0.00 33.89 2.57
109 110 4.424626 GCTCAATCACTCGTAGATGTTCA 58.575 43.478 0.00 0.00 33.89 3.18
110 111 3.799420 GGCTCAATCACTCGTAGATGTTC 59.201 47.826 0.00 0.00 33.89 3.18
111 112 3.735208 CGGCTCAATCACTCGTAGATGTT 60.735 47.826 0.00 0.00 33.89 2.71
112 113 2.223595 CGGCTCAATCACTCGTAGATGT 60.224 50.000 0.00 0.00 33.89 3.06
113 114 2.033424 TCGGCTCAATCACTCGTAGATG 59.967 50.000 0.00 0.00 33.89 2.90
114 115 2.033550 GTCGGCTCAATCACTCGTAGAT 59.966 50.000 0.00 0.00 33.89 1.98
115 116 1.400846 GTCGGCTCAATCACTCGTAGA 59.599 52.381 0.00 0.00 0.00 2.59
116 117 1.132453 TGTCGGCTCAATCACTCGTAG 59.868 52.381 0.00 0.00 0.00 3.51
117 118 1.135489 GTGTCGGCTCAATCACTCGTA 60.135 52.381 0.00 0.00 0.00 3.43
118 119 0.388649 GTGTCGGCTCAATCACTCGT 60.389 55.000 0.00 0.00 0.00 4.18
119 120 0.388520 TGTGTCGGCTCAATCACTCG 60.389 55.000 0.00 0.00 0.00 4.18
120 121 1.929836 GATGTGTCGGCTCAATCACTC 59.070 52.381 0.00 0.00 0.00 3.51
121 122 1.276138 TGATGTGTCGGCTCAATCACT 59.724 47.619 0.00 0.00 0.00 3.41
122 123 1.725641 TGATGTGTCGGCTCAATCAC 58.274 50.000 0.00 0.00 0.00 3.06
123 124 2.169144 AGATGATGTGTCGGCTCAATCA 59.831 45.455 0.00 0.00 0.00 2.57
124 125 2.831333 AGATGATGTGTCGGCTCAATC 58.169 47.619 0.00 0.00 0.00 2.67
125 126 2.941064 CAAGATGATGTGTCGGCTCAAT 59.059 45.455 0.00 0.00 0.00 2.57
126 127 2.349590 CAAGATGATGTGTCGGCTCAA 58.650 47.619 0.00 0.00 0.00 3.02
127 128 1.405933 CCAAGATGATGTGTCGGCTCA 60.406 52.381 0.00 0.00 0.00 4.26
128 129 1.293924 CCAAGATGATGTGTCGGCTC 58.706 55.000 0.00 0.00 0.00 4.70
129 130 0.107508 CCCAAGATGATGTGTCGGCT 60.108 55.000 0.00 0.00 0.00 5.52
130 131 0.107703 TCCCAAGATGATGTGTCGGC 60.108 55.000 0.00 0.00 0.00 5.54
131 132 2.615447 CAATCCCAAGATGATGTGTCGG 59.385 50.000 0.00 0.00 31.29 4.79
132 133 3.534554 TCAATCCCAAGATGATGTGTCG 58.465 45.455 0.00 0.00 31.29 4.35
133 134 4.885907 ACATCAATCCCAAGATGATGTGTC 59.114 41.667 17.09 0.00 42.79 3.67
134 135 4.863548 ACATCAATCCCAAGATGATGTGT 58.136 39.130 17.09 0.00 42.79 3.72
135 136 4.024302 CGACATCAATCCCAAGATGATGTG 60.024 45.833 21.32 11.94 43.51 3.21
136 137 4.132336 CGACATCAATCCCAAGATGATGT 58.868 43.478 17.64 17.64 44.67 3.06
137 138 3.058432 GCGACATCAATCCCAAGATGATG 60.058 47.826 12.12 12.12 43.28 3.07
138 139 3.144506 GCGACATCAATCCCAAGATGAT 58.855 45.455 9.17 0.00 43.28 2.45
139 140 2.564771 GCGACATCAATCCCAAGATGA 58.435 47.619 9.17 0.00 43.28 2.92
140 141 1.605710 GGCGACATCAATCCCAAGATG 59.394 52.381 0.00 0.00 45.44 2.90
141 142 1.212688 TGGCGACATCAATCCCAAGAT 59.787 47.619 0.00 0.00 33.40 2.40
142 143 0.617935 TGGCGACATCAATCCCAAGA 59.382 50.000 0.00 0.00 33.40 3.02
143 144 0.734889 GTGGCGACATCAATCCCAAG 59.265 55.000 0.00 0.00 46.14 3.61
144 145 0.037447 TGTGGCGACATCAATCCCAA 59.963 50.000 0.00 0.00 46.14 4.12
145 146 0.037447 TTGTGGCGACATCAATCCCA 59.963 50.000 1.18 0.00 46.14 4.37
146 147 1.135402 GTTTGTGGCGACATCAATCCC 60.135 52.381 1.18 0.00 46.14 3.85
147 148 1.465689 CGTTTGTGGCGACATCAATCC 60.466 52.381 1.18 0.00 46.14 3.01
148 149 1.882198 CGTTTGTGGCGACATCAATC 58.118 50.000 1.18 0.00 46.14 2.67
149 150 0.109781 GCGTTTGTGGCGACATCAAT 60.110 50.000 1.18 0.00 46.14 2.57
150 151 1.281353 GCGTTTGTGGCGACATCAA 59.719 52.632 1.18 0.00 46.14 2.57
151 152 2.612567 GGCGTTTGTGGCGACATCA 61.613 57.895 1.18 0.00 46.14 3.07
152 153 1.852067 AAGGCGTTTGTGGCGACATC 61.852 55.000 1.18 0.00 46.14 3.06
153 154 1.852067 GAAGGCGTTTGTGGCGACAT 61.852 55.000 1.18 0.00 46.14 3.06
154 155 2.515057 AAGGCGTTTGTGGCGACA 60.515 55.556 0.00 0.00 40.33 4.35
155 156 2.251371 GAAGGCGTTTGTGGCGAC 59.749 61.111 0.00 0.00 39.82 5.19
156 157 3.342627 CGAAGGCGTTTGTGGCGA 61.343 61.111 0.00 0.00 39.82 5.54
171 172 2.490991 AGATGGATATGTCGACGACGA 58.509 47.619 22.06 13.48 46.56 4.20
172 173 2.971430 AGATGGATATGTCGACGACG 57.029 50.000 22.06 0.00 34.95 5.12
173 174 4.468643 GAGAAGATGGATATGTCGACGAC 58.531 47.826 20.97 20.97 0.00 4.34
174 175 3.502595 GGAGAAGATGGATATGTCGACGA 59.497 47.826 11.62 1.21 0.00 4.20
175 176 3.366476 GGGAGAAGATGGATATGTCGACG 60.366 52.174 11.62 0.00 0.00 5.12
176 177 3.574396 TGGGAGAAGATGGATATGTCGAC 59.426 47.826 9.11 9.11 0.00 4.20
177 178 3.829026 CTGGGAGAAGATGGATATGTCGA 59.171 47.826 0.00 0.00 0.00 4.20
178 179 3.576118 ACTGGGAGAAGATGGATATGTCG 59.424 47.826 0.00 0.00 0.00 4.35
179 180 4.590647 TCACTGGGAGAAGATGGATATGTC 59.409 45.833 0.00 0.00 0.00 3.06
180 181 4.560739 TCACTGGGAGAAGATGGATATGT 58.439 43.478 0.00 0.00 0.00 2.29
181 182 5.557576 TTCACTGGGAGAAGATGGATATG 57.442 43.478 0.00 0.00 0.00 1.78
182 183 6.789457 TGTATTCACTGGGAGAAGATGGATAT 59.211 38.462 0.00 0.00 0.00 1.63
183 184 6.042093 GTGTATTCACTGGGAGAAGATGGATA 59.958 42.308 0.00 0.00 40.98 2.59
184 185 4.971282 TGTATTCACTGGGAGAAGATGGAT 59.029 41.667 0.00 0.00 0.00 3.41
185 186 4.162320 GTGTATTCACTGGGAGAAGATGGA 59.838 45.833 0.00 0.00 40.98 3.41
186 187 4.080919 TGTGTATTCACTGGGAGAAGATGG 60.081 45.833 4.01 0.00 44.14 3.51
187 188 5.089970 TGTGTATTCACTGGGAGAAGATG 57.910 43.478 4.01 0.00 44.14 2.90
188 189 5.426509 TGATGTGTATTCACTGGGAGAAGAT 59.573 40.000 4.01 0.00 44.14 2.40
189 190 4.777366 TGATGTGTATTCACTGGGAGAAGA 59.223 41.667 4.01 0.00 44.14 2.87
190 191 5.089970 TGATGTGTATTCACTGGGAGAAG 57.910 43.478 4.01 0.00 44.14 2.85
191 192 5.674525 GATGATGTGTATTCACTGGGAGAA 58.325 41.667 4.01 0.00 44.14 2.87
192 193 4.202151 CGATGATGTGTATTCACTGGGAGA 60.202 45.833 4.01 0.00 44.14 3.71
193 194 4.053983 CGATGATGTGTATTCACTGGGAG 58.946 47.826 4.01 0.00 44.14 4.30
194 195 3.181466 CCGATGATGTGTATTCACTGGGA 60.181 47.826 4.01 0.00 44.14 4.37
195 196 3.133691 CCGATGATGTGTATTCACTGGG 58.866 50.000 4.01 0.00 44.14 4.45
196 197 4.058721 TCCGATGATGTGTATTCACTGG 57.941 45.455 4.01 0.00 44.14 4.00
197 198 4.025396 GCTTCCGATGATGTGTATTCACTG 60.025 45.833 4.01 0.00 44.14 3.66
198 199 4.122776 GCTTCCGATGATGTGTATTCACT 58.877 43.478 4.01 0.00 44.14 3.41
199 200 4.122776 AGCTTCCGATGATGTGTATTCAC 58.877 43.478 0.00 0.00 44.08 3.18
200 201 4.100035 AGAGCTTCCGATGATGTGTATTCA 59.900 41.667 0.00 0.00 0.00 2.57
201 202 4.447054 CAGAGCTTCCGATGATGTGTATTC 59.553 45.833 0.00 0.00 0.00 1.75
202 203 4.100035 TCAGAGCTTCCGATGATGTGTATT 59.900 41.667 0.00 0.00 0.00 1.89
203 204 3.638627 TCAGAGCTTCCGATGATGTGTAT 59.361 43.478 0.00 0.00 0.00 2.29
204 205 3.023832 TCAGAGCTTCCGATGATGTGTA 58.976 45.455 0.00 0.00 0.00 2.90
205 206 1.827344 TCAGAGCTTCCGATGATGTGT 59.173 47.619 0.00 0.00 0.00 3.72
206 207 2.591571 TCAGAGCTTCCGATGATGTG 57.408 50.000 0.00 0.00 0.00 3.21
207 208 2.499289 AGTTCAGAGCTTCCGATGATGT 59.501 45.455 0.00 0.00 0.00 3.06
208 209 2.864946 CAGTTCAGAGCTTCCGATGATG 59.135 50.000 0.00 0.00 0.00 3.07
209 210 2.762887 TCAGTTCAGAGCTTCCGATGAT 59.237 45.455 0.00 0.00 0.00 2.45
210 211 2.171003 TCAGTTCAGAGCTTCCGATGA 58.829 47.619 0.00 0.00 0.00 2.92
211 212 2.662006 TCAGTTCAGAGCTTCCGATG 57.338 50.000 0.00 0.00 0.00 3.84
212 213 3.431486 GGATTCAGTTCAGAGCTTCCGAT 60.431 47.826 0.00 0.00 0.00 4.18
213 214 2.093973 GGATTCAGTTCAGAGCTTCCGA 60.094 50.000 0.00 0.00 0.00 4.55
214 215 2.275318 GGATTCAGTTCAGAGCTTCCG 58.725 52.381 0.00 0.00 0.00 4.30
215 216 3.340814 TGGATTCAGTTCAGAGCTTCC 57.659 47.619 0.00 0.00 0.00 3.46
216 217 5.695851 TTTTGGATTCAGTTCAGAGCTTC 57.304 39.130 0.00 0.00 0.00 3.86
239 240 5.237048 ACTTGACATTGTTGCACACTTTTT 58.763 33.333 0.00 0.00 0.00 1.94
240 241 4.819769 ACTTGACATTGTTGCACACTTTT 58.180 34.783 0.00 0.00 0.00 2.27
241 242 4.423732 GACTTGACATTGTTGCACACTTT 58.576 39.130 0.00 0.00 0.00 2.66
242 243 3.181487 GGACTTGACATTGTTGCACACTT 60.181 43.478 0.00 0.00 0.00 3.16
243 244 2.358898 GGACTTGACATTGTTGCACACT 59.641 45.455 0.00 0.00 0.00 3.55
244 245 2.098934 TGGACTTGACATTGTTGCACAC 59.901 45.455 0.00 0.00 0.00 3.82
245 246 2.373224 TGGACTTGACATTGTTGCACA 58.627 42.857 0.00 0.00 0.00 4.57
246 247 3.066621 TCTTGGACTTGACATTGTTGCAC 59.933 43.478 0.00 0.00 0.00 4.57
247 248 3.066621 GTCTTGGACTTGACATTGTTGCA 59.933 43.478 0.00 0.00 33.75 4.08
248 249 3.316308 AGTCTTGGACTTGACATTGTTGC 59.684 43.478 0.00 0.00 40.28 4.17
264 265 1.873591 CCGACCAAGGTTCAAGTCTTG 59.126 52.381 6.21 6.21 39.83 3.02
265 266 1.489230 ACCGACCAAGGTTCAAGTCTT 59.511 47.619 0.00 0.00 43.00 3.01
266 267 1.129058 ACCGACCAAGGTTCAAGTCT 58.871 50.000 0.00 0.00 43.00 3.24
267 268 3.700198 ACCGACCAAGGTTCAAGTC 57.300 52.632 0.00 0.00 43.00 3.01
275 276 2.033602 GTCCCCAACCGACCAAGG 59.966 66.667 0.00 0.00 37.30 3.61
276 277 1.149627 TTGTCCCCAACCGACCAAG 59.850 57.895 0.00 0.00 0.00 3.61
277 278 1.152922 GTTGTCCCCAACCGACCAA 60.153 57.895 0.00 0.00 44.25 3.67
278 279 2.511900 GTTGTCCCCAACCGACCA 59.488 61.111 0.00 0.00 44.25 4.02
285 286 2.104170 GGAAAACAGTGTTGTCCCCAA 58.896 47.619 28.64 0.00 36.23 4.12
286 287 1.286553 AGGAAAACAGTGTTGTCCCCA 59.713 47.619 33.00 0.00 36.23 4.96
287 288 2.067365 AGGAAAACAGTGTTGTCCCC 57.933 50.000 33.00 19.93 36.23 4.81
288 289 5.784578 ATTTAGGAAAACAGTGTTGTCCC 57.215 39.130 33.00 21.99 36.23 4.46
289 290 7.393515 AGGATATTTAGGAAAACAGTGTTGTCC 59.606 37.037 30.76 30.76 36.23 4.02
290 291 8.336801 AGGATATTTAGGAAAACAGTGTTGTC 57.663 34.615 16.67 16.67 36.23 3.18
291 292 9.227777 GTAGGATATTTAGGAAAACAGTGTTGT 57.772 33.333 9.79 3.15 39.87 3.32
292 293 8.674607 GGTAGGATATTTAGGAAAACAGTGTTG 58.325 37.037 9.79 0.00 0.00 3.33
293 294 8.387813 TGGTAGGATATTTAGGAAAACAGTGTT 58.612 33.333 1.64 1.64 0.00 3.32
294 295 7.827729 GTGGTAGGATATTTAGGAAAACAGTGT 59.172 37.037 0.00 0.00 0.00 3.55
295 296 7.827236 TGTGGTAGGATATTTAGGAAAACAGTG 59.173 37.037 0.00 0.00 0.00 3.66
296 297 7.827729 GTGTGGTAGGATATTTAGGAAAACAGT 59.172 37.037 0.00 0.00 0.00 3.55
297 298 7.011109 CGTGTGGTAGGATATTTAGGAAAACAG 59.989 40.741 0.00 0.00 0.00 3.16
298 299 6.819649 CGTGTGGTAGGATATTTAGGAAAACA 59.180 38.462 0.00 0.00 0.00 2.83
299 300 6.238293 GCGTGTGGTAGGATATTTAGGAAAAC 60.238 42.308 0.00 0.00 0.00 2.43
300 301 5.818857 GCGTGTGGTAGGATATTTAGGAAAA 59.181 40.000 0.00 0.00 0.00 2.29
301 302 5.129815 AGCGTGTGGTAGGATATTTAGGAAA 59.870 40.000 0.00 0.00 0.00 3.13
302 303 4.652421 AGCGTGTGGTAGGATATTTAGGAA 59.348 41.667 0.00 0.00 0.00 3.36
303 304 4.038763 CAGCGTGTGGTAGGATATTTAGGA 59.961 45.833 0.00 0.00 0.00 2.94
304 305 4.307432 CAGCGTGTGGTAGGATATTTAGG 58.693 47.826 0.00 0.00 0.00 2.69
305 306 4.307432 CCAGCGTGTGGTAGGATATTTAG 58.693 47.826 0.00 0.00 42.17 1.85
306 307 4.330944 CCAGCGTGTGGTAGGATATTTA 57.669 45.455 0.00 0.00 42.17 1.40
307 308 3.194005 CCAGCGTGTGGTAGGATATTT 57.806 47.619 0.00 0.00 42.17 1.40
308 309 2.910688 CCAGCGTGTGGTAGGATATT 57.089 50.000 0.00 0.00 42.17 1.28
318 319 2.490328 AATTTGTGAACCAGCGTGTG 57.510 45.000 0.00 0.00 0.00 3.82
319 320 3.518634 AAAATTTGTGAACCAGCGTGT 57.481 38.095 0.00 0.00 0.00 4.49
320 321 5.689514 TGATAAAAATTTGTGAACCAGCGTG 59.310 36.000 0.00 0.00 0.00 5.34
321 322 5.837437 TGATAAAAATTTGTGAACCAGCGT 58.163 33.333 0.00 0.00 0.00 5.07
322 323 5.920273 ACTGATAAAAATTTGTGAACCAGCG 59.080 36.000 0.00 0.00 0.00 5.18
323 324 7.713764 AACTGATAAAAATTTGTGAACCAGC 57.286 32.000 0.00 0.00 0.00 4.85
324 325 9.097257 ACAAACTGATAAAAATTTGTGAACCAG 57.903 29.630 0.67 0.00 42.22 4.00
325 326 9.092876 GACAAACTGATAAAAATTTGTGAACCA 57.907 29.630 5.97 0.00 43.46 3.67
326 327 9.313118 AGACAAACTGATAAAAATTTGTGAACC 57.687 29.630 5.97 0.00 43.46 3.62
336 337 9.872757 GACGTGAATTAGACAAACTGATAAAAA 57.127 29.630 0.00 0.00 0.00 1.94
337 338 9.268268 AGACGTGAATTAGACAAACTGATAAAA 57.732 29.630 0.00 0.00 0.00 1.52
338 339 8.827177 AGACGTGAATTAGACAAACTGATAAA 57.173 30.769 0.00 0.00 0.00 1.40
339 340 9.569167 CTAGACGTGAATTAGACAAACTGATAA 57.431 33.333 0.00 0.00 0.00 1.75
340 341 8.953313 TCTAGACGTGAATTAGACAAACTGATA 58.047 33.333 0.00 0.00 0.00 2.15
341 342 7.827701 TCTAGACGTGAATTAGACAAACTGAT 58.172 34.615 0.00 0.00 0.00 2.90
342 343 7.210718 TCTAGACGTGAATTAGACAAACTGA 57.789 36.000 0.00 0.00 0.00 3.41
343 344 7.542477 ACATCTAGACGTGAATTAGACAAACTG 59.458 37.037 0.00 0.00 0.00 3.16
344 345 7.603651 ACATCTAGACGTGAATTAGACAAACT 58.396 34.615 0.00 0.00 0.00 2.66
345 346 7.813852 ACATCTAGACGTGAATTAGACAAAC 57.186 36.000 0.00 0.00 0.00 2.93
346 347 8.827177 AAACATCTAGACGTGAATTAGACAAA 57.173 30.769 0.00 0.00 0.00 2.83
347 348 8.827177 AAAACATCTAGACGTGAATTAGACAA 57.173 30.769 0.00 0.00 0.00 3.18
348 349 8.827177 AAAAACATCTAGACGTGAATTAGACA 57.173 30.769 0.00 0.00 0.00 3.41
370 371 5.010617 GGAGGCACTTTCACATCCTTAAAAA 59.989 40.000 0.00 0.00 41.55 1.94
371 372 4.522789 GGAGGCACTTTCACATCCTTAAAA 59.477 41.667 0.00 0.00 41.55 1.52
372 373 4.079253 GGAGGCACTTTCACATCCTTAAA 58.921 43.478 0.00 0.00 41.55 1.52
373 374 3.561313 GGGAGGCACTTTCACATCCTTAA 60.561 47.826 0.00 0.00 41.55 1.85
374 375 2.026262 GGGAGGCACTTTCACATCCTTA 60.026 50.000 0.00 0.00 41.55 2.69
375 376 1.272147 GGGAGGCACTTTCACATCCTT 60.272 52.381 0.00 0.00 41.55 3.36
376 377 0.329596 GGGAGGCACTTTCACATCCT 59.670 55.000 0.00 0.00 41.55 3.24
377 378 0.329596 AGGGAGGCACTTTCACATCC 59.670 55.000 0.00 0.00 41.55 3.51
378 379 1.003580 TCAGGGAGGCACTTTCACATC 59.996 52.381 0.00 0.00 41.55 3.06
379 380 1.067295 TCAGGGAGGCACTTTCACAT 58.933 50.000 0.00 0.00 41.55 3.21
380 381 0.843309 TTCAGGGAGGCACTTTCACA 59.157 50.000 0.00 0.00 41.55 3.58
381 382 1.981256 TTTCAGGGAGGCACTTTCAC 58.019 50.000 0.00 0.00 41.55 3.18
382 383 2.517959 CATTTCAGGGAGGCACTTTCA 58.482 47.619 0.00 0.00 41.55 2.69
383 384 1.203287 GCATTTCAGGGAGGCACTTTC 59.797 52.381 0.00 0.00 41.55 2.62
384 385 1.260544 GCATTTCAGGGAGGCACTTT 58.739 50.000 0.00 0.00 41.55 2.66
385 386 0.613012 GGCATTTCAGGGAGGCACTT 60.613 55.000 0.00 0.00 41.55 3.16
387 388 0.899717 TTGGCATTTCAGGGAGGCAC 60.900 55.000 0.00 0.00 36.22 5.01
388 389 0.041535 ATTGGCATTTCAGGGAGGCA 59.958 50.000 0.00 0.00 34.56 4.75
389 390 1.197812 AATTGGCATTTCAGGGAGGC 58.802 50.000 0.00 0.00 0.00 4.70
390 391 3.369787 GGAAAATTGGCATTTCAGGGAGG 60.370 47.826 13.80 0.00 38.29 4.30
391 392 3.261390 TGGAAAATTGGCATTTCAGGGAG 59.739 43.478 13.80 0.00 38.29 4.30
392 393 3.246301 TGGAAAATTGGCATTTCAGGGA 58.754 40.909 13.80 0.00 38.29 4.20
393 394 3.699411 TGGAAAATTGGCATTTCAGGG 57.301 42.857 13.80 0.00 38.29 4.45
394 395 4.897140 TCTTGGAAAATTGGCATTTCAGG 58.103 39.130 13.80 0.53 38.29 3.86
478 488 1.368641 TCAGGAAAATGTCATCGGCG 58.631 50.000 0.00 0.00 0.00 6.46
487 497 8.453238 AGAGATCAAATCAGATCAGGAAAATG 57.547 34.615 6.70 0.00 45.39 2.32
513 523 2.091541 ACTCAACCACAACAACACCAG 58.908 47.619 0.00 0.00 0.00 4.00
519 529 3.192422 CACTGGAAACTCAACCACAACAA 59.808 43.478 0.00 0.00 32.44 2.83
529 539 1.064758 AGGTTGTGCACTGGAAACTCA 60.065 47.619 19.41 0.00 0.00 3.41
531 541 2.572290 GTAGGTTGTGCACTGGAAACT 58.428 47.619 19.41 14.35 0.00 2.66
540 550 3.596310 TTACATAGCGTAGGTTGTGCA 57.404 42.857 0.00 0.00 40.68 4.57
542 552 4.675565 CGAGATTACATAGCGTAGGTTGTG 59.324 45.833 0.00 0.00 40.68 3.33
543 553 4.792057 GCGAGATTACATAGCGTAGGTTGT 60.792 45.833 0.00 0.00 40.68 3.32
544 554 3.669122 GCGAGATTACATAGCGTAGGTTG 59.331 47.826 0.00 0.00 40.68 3.77
547 562 3.188667 TCTGCGAGATTACATAGCGTAGG 59.811 47.826 0.00 0.00 35.81 3.18
549 564 4.823790 TTCTGCGAGATTACATAGCGTA 57.176 40.909 0.00 0.00 0.00 4.42
555 570 5.647658 TGTTTCCATTTCTGCGAGATTACAT 59.352 36.000 0.00 0.00 0.00 2.29
563 578 4.940654 TGTGATATGTTTCCATTTCTGCGA 59.059 37.500 0.00 0.00 32.25 5.10
591 624 9.626045 GGGAGAAATTGTGACTAATGTAAAAAG 57.374 33.333 0.00 0.00 0.00 2.27
596 629 8.739039 CATTTGGGAGAAATTGTGACTAATGTA 58.261 33.333 0.00 0.00 0.00 2.29
600 633 8.877864 ATACATTTGGGAGAAATTGTGACTAA 57.122 30.769 0.00 0.00 0.00 2.24
603 636 6.564328 GGATACATTTGGGAGAAATTGTGAC 58.436 40.000 0.00 0.00 0.00 3.67
604 637 5.356751 CGGATACATTTGGGAGAAATTGTGA 59.643 40.000 0.00 0.00 0.00 3.58
606 639 4.644685 CCGGATACATTTGGGAGAAATTGT 59.355 41.667 0.00 0.00 0.00 2.71
609 642 3.222603 GCCGGATACATTTGGGAGAAAT 58.777 45.455 5.05 0.00 0.00 2.17
618 651 4.156455 AGATGTCTTGCCGGATACATTT 57.844 40.909 5.05 0.69 32.87 2.32
620 653 3.845781 AAGATGTCTTGCCGGATACAT 57.154 42.857 5.05 8.46 34.38 2.29
625 658 2.483013 CGGATTAAGATGTCTTGCCGGA 60.483 50.000 5.05 0.00 39.98 5.14
626 659 1.867233 CGGATTAAGATGTCTTGCCGG 59.133 52.381 17.88 0.00 39.98 6.13
677 710 8.840833 TTAATTGGTTAATTTTGGAAGAAGGC 57.159 30.769 0.00 0.00 37.64 4.35
695 728 5.694231 TGCGATCATCCAGAATTAATTGG 57.306 39.130 5.17 2.42 35.74 3.16
715 748 6.317140 TCACATTCAGATGAGATAAGGTTTGC 59.683 38.462 0.00 0.00 36.73 3.68
717 750 7.337942 GGTTCACATTCAGATGAGATAAGGTTT 59.662 37.037 0.00 0.00 33.74 3.27
718 751 6.825721 GGTTCACATTCAGATGAGATAAGGTT 59.174 38.462 0.00 0.00 33.74 3.50
719 752 6.070021 TGGTTCACATTCAGATGAGATAAGGT 60.070 38.462 0.00 0.00 33.74 3.50
720 753 6.259608 GTGGTTCACATTCAGATGAGATAAGG 59.740 42.308 0.00 0.00 33.74 2.69
721 754 6.259608 GGTGGTTCACATTCAGATGAGATAAG 59.740 42.308 0.38 0.00 35.86 1.73
722 755 6.115446 GGTGGTTCACATTCAGATGAGATAA 58.885 40.000 0.38 0.00 35.86 1.75
723 756 5.189539 TGGTGGTTCACATTCAGATGAGATA 59.810 40.000 0.38 0.00 35.86 1.98
728 761 4.852134 TTTGGTGGTTCACATTCAGATG 57.148 40.909 0.38 0.00 35.86 2.90
780 813 1.136529 CGAAAATGCGATCGCGATCAT 60.137 47.619 39.26 27.74 45.51 2.45
798 831 5.523438 AGCAATTTTGGAAGTTTTACCGA 57.477 34.783 0.00 0.00 0.00 4.69
803 836 4.058721 AGCGAGCAATTTTGGAAGTTTT 57.941 36.364 0.00 0.00 0.00 2.43
882 919 2.438434 GGTGGAGATGGCGTTGGG 60.438 66.667 0.00 0.00 0.00 4.12
938 976 1.300233 GCGAGGAGTAATGGAGCGG 60.300 63.158 0.00 0.00 0.00 5.52
939 977 1.300233 GGCGAGGAGTAATGGAGCG 60.300 63.158 0.00 0.00 0.00 5.03
940 978 1.300233 CGGCGAGGAGTAATGGAGC 60.300 63.158 0.00 0.00 0.00 4.70
941 979 1.300233 GCGGCGAGGAGTAATGGAG 60.300 63.158 12.98 0.00 0.00 3.86
942 980 1.735376 GAGCGGCGAGGAGTAATGGA 61.735 60.000 12.98 0.00 0.00 3.41
943 981 1.300233 GAGCGGCGAGGAGTAATGG 60.300 63.158 12.98 0.00 0.00 3.16
944 982 0.872021 GTGAGCGGCGAGGAGTAATG 60.872 60.000 12.98 0.00 0.00 1.90
945 983 1.038130 AGTGAGCGGCGAGGAGTAAT 61.038 55.000 12.98 0.00 0.00 1.89
972 1010 3.809374 CTGGATCTAACCGGGCGCC 62.809 68.421 21.18 21.18 33.06 6.53
973 1011 2.280186 CTGGATCTAACCGGGCGC 60.280 66.667 6.32 0.00 33.06 6.53
975 1013 2.280186 CGCTGGATCTAACCGGGC 60.280 66.667 6.32 0.00 36.85 6.13
979 1041 2.367567 TGGTTATCCGCTGGATCTAACC 59.632 50.000 22.35 22.35 44.74 2.85
981 1043 3.646162 ACATGGTTATCCGCTGGATCTAA 59.354 43.478 12.43 2.03 42.11 2.10
983 1045 2.037772 GACATGGTTATCCGCTGGATCT 59.962 50.000 12.43 0.00 42.11 2.75
994 1056 3.039011 AGTAGCTTCCCGACATGGTTAT 58.961 45.455 0.00 0.00 35.15 1.89
997 1059 0.824759 GAGTAGCTTCCCGACATGGT 59.175 55.000 0.00 0.00 35.15 3.55
1242 1308 2.281970 TCCTTGTGCTGCTGCTGG 60.282 61.111 17.00 12.70 40.48 4.85
1343 1415 3.423154 CGAACTCCACCTTGCGCC 61.423 66.667 4.18 0.00 0.00 6.53
1458 1530 2.283676 GGGGACACGACCTCCTCA 60.284 66.667 0.00 0.00 0.00 3.86
1470 1542 4.436998 CCGCACGAGACAGGGGAC 62.437 72.222 0.00 0.00 40.00 4.46
1491 1563 2.733593 GTGGTGACGCACGACTCC 60.734 66.667 14.45 1.61 39.40 3.85
1617 1701 2.812619 GCGAGGGGGAAGGGAGATG 61.813 68.421 0.00 0.00 0.00 2.90
1657 1741 2.372690 CGGCTCCGTCGAAGTGTTG 61.373 63.158 0.00 0.00 29.41 3.33
1671 1755 0.734942 CGTCGTGGTTGTTATCGGCT 60.735 55.000 0.00 0.00 0.00 5.52
1677 1761 2.356075 CCGCCGTCGTGGTTGTTA 60.356 61.111 0.00 0.00 41.21 2.41
1701 1791 3.417224 TCCAGGTCGTCGTCGTCG 61.417 66.667 5.50 5.50 38.33 5.12
1702 1792 2.175322 GTCCAGGTCGTCGTCGTC 59.825 66.667 1.33 0.00 38.33 4.20
1703 1793 3.720193 CGTCCAGGTCGTCGTCGT 61.720 66.667 1.33 0.00 38.33 4.34
1943 2033 2.549992 GGGATTTTTGGGTTGAAGGTGC 60.550 50.000 0.00 0.00 0.00 5.01
1948 2042 4.493618 TGGTATGGGATTTTTGGGTTGAA 58.506 39.130 0.00 0.00 0.00 2.69
1966 2060 7.523052 CGAGAAAACTTTGGATTTGGATTGGTA 60.523 37.037 0.00 0.00 0.00 3.25
1980 2074 6.548171 TCTTTACACAACCGAGAAAACTTTG 58.452 36.000 0.00 0.00 0.00 2.77
1984 2078 6.295039 TGATCTTTACACAACCGAGAAAAC 57.705 37.500 0.00 0.00 0.00 2.43
2009 2103 9.508642 GAAGGAGAACTAATTTAAGGGGATATG 57.491 37.037 0.00 0.00 0.00 1.78
2010 2104 9.467030 AGAAGGAGAACTAATTTAAGGGGATAT 57.533 33.333 0.00 0.00 0.00 1.63
2011 2105 8.871570 AGAAGGAGAACTAATTTAAGGGGATA 57.128 34.615 0.00 0.00 0.00 2.59
2028 2122 2.292587 GGGAAGGAGAAGGAGAAGGAGA 60.293 54.545 0.00 0.00 0.00 3.71
2029 2123 2.115427 GGGAAGGAGAAGGAGAAGGAG 58.885 57.143 0.00 0.00 0.00 3.69
2030 2124 1.725182 AGGGAAGGAGAAGGAGAAGGA 59.275 52.381 0.00 0.00 0.00 3.36
2031 2125 2.262266 AGGGAAGGAGAAGGAGAAGG 57.738 55.000 0.00 0.00 0.00 3.46
2032 2126 3.449918 AGAAGGGAAGGAGAAGGAGAAG 58.550 50.000 0.00 0.00 0.00 2.85
2033 2127 3.569135 AGAAGGGAAGGAGAAGGAGAA 57.431 47.619 0.00 0.00 0.00 2.87
2034 2128 3.177228 CAAGAAGGGAAGGAGAAGGAGA 58.823 50.000 0.00 0.00 0.00 3.71
2035 2129 2.238395 CCAAGAAGGGAAGGAGAAGGAG 59.762 54.545 0.00 0.00 0.00 3.69
2036 2130 2.269940 CCAAGAAGGGAAGGAGAAGGA 58.730 52.381 0.00 0.00 0.00 3.36
2037 2131 1.988846 ACCAAGAAGGGAAGGAGAAGG 59.011 52.381 0.00 0.00 43.89 3.46
2038 2132 2.373502 ACACCAAGAAGGGAAGGAGAAG 59.626 50.000 0.00 0.00 43.89 2.85
2043 2137 0.895559 GGCACACCAAGAAGGGAAGG 60.896 60.000 0.00 0.00 43.89 3.46
2124 2218 1.996292 TCGAGCTCTGGATTTCGTTG 58.004 50.000 12.85 0.00 34.83 4.10
2128 2222 1.604185 CGGGATCGAGCTCTGGATTTC 60.604 57.143 12.85 5.08 39.00 2.17
2129 2223 0.390860 CGGGATCGAGCTCTGGATTT 59.609 55.000 12.85 0.00 39.00 2.17
2146 2240 1.078426 AAACGGGGAAGCAGATCGG 60.078 57.895 0.00 0.00 0.00 4.18
2287 2384 0.447801 CGAGCCGACCATTCTTTTGG 59.552 55.000 0.00 0.00 42.82 3.28
2292 2389 2.125512 GCACGAGCCGACCATTCT 60.126 61.111 0.00 0.00 33.58 2.40
2294 2391 2.125512 GAGCACGAGCCGACCATT 60.126 61.111 0.00 0.00 43.56 3.16
2343 2440 1.670811 GTGTGTTGGATCCTAATGGCG 59.329 52.381 14.23 0.00 0.00 5.69
2369 2466 5.106277 GGATCCAACTTAAGTGGTAAGCAAC 60.106 44.000 9.34 0.00 42.75 4.17
2393 2490 8.630037 GGATAGAGGAAGAAGAAGAAGTAGAAG 58.370 40.741 0.00 0.00 0.00 2.85
2394 2491 8.116669 TGGATAGAGGAAGAAGAAGAAGTAGAA 58.883 37.037 0.00 0.00 0.00 2.10
2395 2492 7.644062 TGGATAGAGGAAGAAGAAGAAGTAGA 58.356 38.462 0.00 0.00 0.00 2.59
2396 2493 7.889873 TGGATAGAGGAAGAAGAAGAAGTAG 57.110 40.000 0.00 0.00 0.00 2.57
2397 2494 7.507616 GGATGGATAGAGGAAGAAGAAGAAGTA 59.492 40.741 0.00 0.00 0.00 2.24
2398 2495 6.326323 GGATGGATAGAGGAAGAAGAAGAAGT 59.674 42.308 0.00 0.00 0.00 3.01
2399 2496 6.326064 TGGATGGATAGAGGAAGAAGAAGAAG 59.674 42.308 0.00 0.00 0.00 2.85
2400 2497 6.205298 TGGATGGATAGAGGAAGAAGAAGAA 58.795 40.000 0.00 0.00 0.00 2.52
2401 2498 5.781827 TGGATGGATAGAGGAAGAAGAAGA 58.218 41.667 0.00 0.00 0.00 2.87
2481 2588 8.677300 CACAACTAACATGGCATAACTCTTTAT 58.323 33.333 0.00 0.00 0.00 1.40
2482 2589 7.880713 TCACAACTAACATGGCATAACTCTTTA 59.119 33.333 0.00 0.00 0.00 1.85
2687 2836 3.456277 ACATTAAGAGGTCAGGATCACCC 59.544 47.826 0.00 0.00 33.96 4.61
2689 2838 3.873952 GCACATTAAGAGGTCAGGATCAC 59.126 47.826 0.00 0.00 0.00 3.06
2873 3030 8.311836 GGAGTATTAGCACCATAATTAGCACTA 58.688 37.037 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.