Multiple sequence alignment - TraesCS2B01G589000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G589000 chr2B 100.000 2950 0 0 1 2950 775374715 775371766 0.000000e+00 5448.0
1 TraesCS2B01G589000 chr2B 97.059 34 1 0 1360 1393 133018410 133018443 1.140000e-04 58.4
2 TraesCS2B01G589000 chr2D 88.227 1427 60 25 616 1962 631963727 631962329 0.000000e+00 1605.0
3 TraesCS2B01G589000 chr2D 83.784 629 78 12 1 617 631972090 631971474 2.550000e-160 575.0
4 TraesCS2B01G589000 chr2D 91.848 184 14 1 2015 2198 631962185 631962003 3.770000e-64 255.0
5 TraesCS2B01G589000 chr2D 83.673 245 28 8 2718 2950 631961956 631961712 1.380000e-53 220.0
6 TraesCS2B01G589000 chr2A 90.049 1236 53 17 787 1979 759811448 759812656 0.000000e+00 1537.0
7 TraesCS2B01G589000 chr2A 86.902 397 36 5 1 392 759809897 759810282 5.840000e-117 431.0
8 TraesCS2B01G589000 chr2A 83.384 331 32 13 467 783 759811094 759811415 4.810000e-73 285.0
9 TraesCS2B01G589000 chr2A 94.737 76 4 0 2041 2116 759812788 759812863 5.170000e-23 119.0
10 TraesCS2B01G589000 chr2A 81.651 109 15 4 2722 2828 729832185 729832080 5.240000e-13 86.1
11 TraesCS2B01G589000 chr2A 97.059 34 0 1 1360 1393 763024192 763024224 4.110000e-04 56.5
12 TraesCS2B01G589000 chr1B 87.861 1038 58 23 1035 2011 296811261 296810231 0.000000e+00 1157.0
13 TraesCS2B01G589000 chr1B 84.868 793 86 15 1 783 296812298 296811530 0.000000e+00 769.0
14 TraesCS2B01G589000 chr1B 90.704 398 31 3 2015 2407 296807444 296807048 2.600000e-145 525.0
15 TraesCS2B01G589000 chr1B 93.162 117 4 4 787 903 296811484 296811372 5.060000e-38 169.0
16 TraesCS2B01G589000 chr1B 100.000 31 0 0 1363 1393 529391937 529391907 1.140000e-04 58.4
17 TraesCS2B01G589000 chr1A 82.495 954 90 45 1 903 256986396 256985469 0.000000e+00 765.0
18 TraesCS2B01G589000 chr1A 86.927 589 44 10 1034 1593 256985324 256984740 5.370000e-177 630.0
19 TraesCS2B01G589000 chr1A 92.327 391 18 3 1597 1978 256984599 256984212 2.000000e-151 545.0
20 TraesCS2B01G589000 chr1A 89.790 333 27 3 2028 2359 256982486 256982160 1.260000e-113 420.0
21 TraesCS2B01G589000 chr1A 95.000 40 2 0 931 970 256985398 256985359 2.450000e-06 63.9
22 TraesCS2B01G589000 chr3D 79.456 331 50 9 1033 1345 556028460 556028130 4.950000e-53 219.0
23 TraesCS2B01G589000 chr3A 79.167 312 47 9 1052 1345 692963102 692962791 1.790000e-47 200.0
24 TraesCS2B01G589000 chr3B 78.205 312 41 12 1052 1345 739029651 739029349 1.090000e-39 174.0
25 TraesCS2B01G589000 chr5B 100.000 30 0 0 1364 1393 480157917 480157888 4.110000e-04 56.5
26 TraesCS2B01G589000 chr4D 94.286 35 2 0 1359 1393 57077866 57077900 1.000000e-03 54.7
27 TraesCS2B01G589000 chr1D 100.000 29 0 0 1365 1393 186010878 186010850 1.000000e-03 54.7
28 TraesCS2B01G589000 chr1D 100.000 29 0 0 1365 1393 470620967 470620939 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G589000 chr2B 775371766 775374715 2949 True 5448.000000 5448 100.00000 1 2950 1 chr2B.!!$R1 2949
1 TraesCS2B01G589000 chr2D 631961712 631963727 2015 True 693.333333 1605 87.91600 616 2950 3 chr2D.!!$R2 2334
2 TraesCS2B01G589000 chr2D 631971474 631972090 616 True 575.000000 575 83.78400 1 617 1 chr2D.!!$R1 616
3 TraesCS2B01G589000 chr2A 759809897 759812863 2966 False 593.000000 1537 88.76800 1 2116 4 chr2A.!!$F2 2115
4 TraesCS2B01G589000 chr1B 296807048 296812298 5250 True 655.000000 1157 89.14875 1 2407 4 chr1B.!!$R2 2406
5 TraesCS2B01G589000 chr1A 256982160 256986396 4236 True 484.780000 765 89.30780 1 2359 5 chr1A.!!$R1 2358

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
347 353 0.034059 CCTTGGCTAGCTCCATACCG 59.966 60.0 15.72 0.0 35.77 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2651 7843 0.035056 AGGTGAGTACAAGCATGCCC 60.035 55.0 15.66 4.79 0.0 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.106239 ACAATATTTGACACAACAACCCAAAA 58.894 30.769 0.00 0.00 31.63 2.44
38 39 3.154827 ACCCAAAATTCTCGTGACCAT 57.845 42.857 0.00 0.00 0.00 3.55
45 46 6.920758 CCAAAATTCTCGTGACCATTTTAACA 59.079 34.615 8.69 0.00 29.64 2.41
53 54 7.012894 TCTCGTGACCATTTTAACAGTTTTCAT 59.987 33.333 0.00 0.00 0.00 2.57
139 143 4.226761 GTCGAAATGTCATTTGGTCCAAC 58.773 43.478 15.52 5.09 31.47 3.77
199 203 6.698008 TCCTCTACATAAAAATGGCATGTG 57.302 37.500 0.00 0.00 34.78 3.21
215 219 4.860907 GGCATGTGCATTTTCTAGTTTCAG 59.139 41.667 7.36 0.00 44.36 3.02
244 250 9.037737 GTAATTAAACGGAGCATATGACTACAA 57.962 33.333 6.97 0.00 0.00 2.41
330 336 2.499685 CTAGCCGCGCCTAAACCT 59.500 61.111 0.00 0.00 0.00 3.50
339 345 0.107654 CGCCTAAACCTTGGCTAGCT 60.108 55.000 15.72 0.00 46.42 3.32
342 348 1.559682 CCTAAACCTTGGCTAGCTCCA 59.440 52.381 15.72 1.57 0.00 3.86
343 349 2.173569 CCTAAACCTTGGCTAGCTCCAT 59.826 50.000 15.72 0.00 35.77 3.41
347 353 0.034059 CCTTGGCTAGCTCCATACCG 59.966 60.000 15.72 0.00 35.77 4.02
352 358 0.666913 GCTAGCTCCATACCGTTCGA 59.333 55.000 7.70 0.00 0.00 3.71
363 369 1.810030 CCGTTCGAGGCTAGCCAAC 60.810 63.158 34.70 26.67 38.92 3.77
382 388 3.075005 GGTAGCCGCACCTCCTCA 61.075 66.667 0.00 0.00 35.55 3.86
398 404 2.612115 CAGGCCCCCAGGAGAACT 60.612 66.667 0.00 0.00 33.47 3.01
430 436 2.754658 CCGAGCCACTCCGGTAGT 60.755 66.667 0.00 0.30 40.78 2.73
432 438 2.044555 CGAGCCACTCCGGTAGTCA 61.045 63.158 0.00 0.00 35.76 3.41
446 472 0.474854 TAGTCAGGGTTTGGAGGCCA 60.475 55.000 5.01 0.00 0.00 5.36
450 476 3.590574 GGGTTTGGAGGCCAGGGT 61.591 66.667 5.01 0.00 33.81 4.34
524 1284 1.686325 GCCGAGGGTGGAATGAGCTA 61.686 60.000 0.00 0.00 0.00 3.32
533 1293 1.138859 TGGAATGAGCTATGGACCACG 59.861 52.381 0.00 0.00 0.00 4.94
537 1297 0.398522 TGAGCTATGGACCACGGGAT 60.399 55.000 0.00 0.00 0.00 3.85
544 1304 1.364269 TGGACCACGGGATAAAAGGT 58.636 50.000 0.00 0.00 34.76 3.50
734 1519 5.163663 GGAAACCGATCATGTGCTTAAATCA 60.164 40.000 0.00 0.00 0.00 2.57
735 1520 5.490139 AACCGATCATGTGCTTAAATCAG 57.510 39.130 0.00 0.00 0.00 2.90
736 1521 4.769688 ACCGATCATGTGCTTAAATCAGA 58.230 39.130 0.00 0.00 0.00 3.27
737 1522 4.813161 ACCGATCATGTGCTTAAATCAGAG 59.187 41.667 0.00 0.00 0.00 3.35
738 1523 4.813161 CCGATCATGTGCTTAAATCAGAGT 59.187 41.667 0.00 0.00 0.00 3.24
739 1524 5.985530 CCGATCATGTGCTTAAATCAGAGTA 59.014 40.000 0.00 0.00 0.00 2.59
740 1525 6.648310 CCGATCATGTGCTTAAATCAGAGTAT 59.352 38.462 0.00 0.00 0.00 2.12
741 1526 7.148672 CCGATCATGTGCTTAAATCAGAGTATC 60.149 40.741 0.00 0.00 0.00 2.24
742 1527 7.383300 CGATCATGTGCTTAAATCAGAGTATCA 59.617 37.037 0.00 0.00 37.82 2.15
783 1568 4.450976 GAAAACCCTGAAAATTGGCAACT 58.549 39.130 0.00 0.00 37.61 3.16
785 1570 4.600692 AACCCTGAAAATTGGCAACTAC 57.399 40.909 0.00 0.00 37.61 2.73
793 1620 4.801330 AAATTGGCAACTACTAAAGGCC 57.199 40.909 0.00 0.00 44.82 5.19
866 1694 2.897350 CCGATTCCTGCCGCCTTC 60.897 66.667 0.00 0.00 0.00 3.46
869 1697 0.034059 CGATTCCTGCCGCCTTCTAT 59.966 55.000 0.00 0.00 0.00 1.98
870 1698 1.272490 CGATTCCTGCCGCCTTCTATA 59.728 52.381 0.00 0.00 0.00 1.31
871 1699 2.672478 CGATTCCTGCCGCCTTCTATAG 60.672 54.545 0.00 0.00 0.00 1.31
872 1700 0.393077 TTCCTGCCGCCTTCTATAGC 59.607 55.000 0.00 0.00 0.00 2.97
873 1701 0.759060 TCCTGCCGCCTTCTATAGCA 60.759 55.000 0.00 0.00 0.00 3.49
874 1702 0.322975 CCTGCCGCCTTCTATAGCAT 59.677 55.000 0.00 0.00 32.11 3.79
876 1704 2.072298 CTGCCGCCTTCTATAGCATTC 58.928 52.381 0.00 0.00 32.11 2.67
877 1705 1.694150 TGCCGCCTTCTATAGCATTCT 59.306 47.619 0.00 0.00 0.00 2.40
878 1706 2.289072 TGCCGCCTTCTATAGCATTCTC 60.289 50.000 0.00 0.00 0.00 2.87
916 1758 3.530260 GGCCGCCACATGGATTGG 61.530 66.667 3.91 1.01 37.39 3.16
925 1767 1.135315 CACATGGATTGGCAACCGAAG 60.135 52.381 0.00 0.00 0.00 3.79
970 1843 3.876914 TCTGATTTTCACACGCTGACTTT 59.123 39.130 0.00 0.00 0.00 2.66
971 1844 4.024893 TCTGATTTTCACACGCTGACTTTC 60.025 41.667 0.00 0.00 0.00 2.62
972 1845 3.625313 TGATTTTCACACGCTGACTTTCA 59.375 39.130 0.00 0.00 0.00 2.69
973 1846 3.398954 TTTTCACACGCTGACTTTCAC 57.601 42.857 0.00 0.00 0.00 3.18
974 1847 2.309528 TTCACACGCTGACTTTCACT 57.690 45.000 0.00 0.00 0.00 3.41
975 1848 2.309528 TCACACGCTGACTTTCACTT 57.690 45.000 0.00 0.00 0.00 3.16
976 1849 2.627945 TCACACGCTGACTTTCACTTT 58.372 42.857 0.00 0.00 0.00 2.66
981 1854 2.549754 ACGCTGACTTTCACTTTGGATG 59.450 45.455 0.00 0.00 0.00 3.51
1059 1940 2.509336 GTCCTGATCCACGGCGTG 60.509 66.667 31.78 31.78 0.00 5.34
1362 2261 1.369625 CCATGACCTACGCCTTCAAC 58.630 55.000 0.00 0.00 0.00 3.18
1394 2293 1.332375 TCCGTCCGAAAAAGCTTGTTG 59.668 47.619 6.60 0.00 0.00 3.33
1395 2294 1.064952 CCGTCCGAAAAAGCTTGTTGT 59.935 47.619 6.60 0.00 0.00 3.32
1396 2295 2.108700 CGTCCGAAAAAGCTTGTTGTG 58.891 47.619 6.60 0.00 0.00 3.33
1399 2298 3.924073 GTCCGAAAAAGCTTGTTGTGTTT 59.076 39.130 6.60 0.00 0.00 2.83
1412 2320 4.619973 TGTTGTGTTTCTCAAATGGATGC 58.380 39.130 0.00 0.00 0.00 3.91
1413 2321 3.940209 TGTGTTTCTCAAATGGATGCC 57.060 42.857 0.00 0.00 0.00 4.40
1441 2350 8.500773 CCATTAACAATTGTACTACGAAACTGT 58.499 33.333 12.39 0.00 0.00 3.55
1638 2697 9.298250 TCCTTATATGTACTTCCTCTGATGTAC 57.702 37.037 10.24 10.24 45.48 2.90
1651 2727 5.928839 CCTCTGATGTACTATGGTGCAATAC 59.071 44.000 3.76 0.58 41.06 1.89
1922 2998 5.275067 AGCTCTCAGAATTACTCATGGTC 57.725 43.478 0.00 0.00 0.00 4.02
1984 4828 4.691860 CTTCAGTGGAAGCGAATTTCAT 57.308 40.909 0.00 0.00 43.67 2.57
1985 4829 5.801350 CTTCAGTGGAAGCGAATTTCATA 57.199 39.130 0.00 0.00 43.67 2.15
1986 4830 6.182039 CTTCAGTGGAAGCGAATTTCATAA 57.818 37.500 0.00 0.00 43.67 1.90
1987 4831 6.757897 TTCAGTGGAAGCGAATTTCATAAT 57.242 33.333 0.00 0.00 0.00 1.28
1988 4832 6.122850 TCAGTGGAAGCGAATTTCATAATG 57.877 37.500 0.00 0.00 0.00 1.90
1989 4833 5.879777 TCAGTGGAAGCGAATTTCATAATGA 59.120 36.000 0.00 0.00 0.00 2.57
1991 4835 5.297776 AGTGGAAGCGAATTTCATAATGAGG 59.702 40.000 0.00 0.00 0.00 3.86
1993 4837 5.652014 TGGAAGCGAATTTCATAATGAGGTT 59.348 36.000 0.00 0.00 0.00 3.50
1994 4838 6.826231 TGGAAGCGAATTTCATAATGAGGTTA 59.174 34.615 0.00 0.00 0.00 2.85
1995 4839 7.338196 TGGAAGCGAATTTCATAATGAGGTTAA 59.662 33.333 0.00 0.00 0.00 2.01
1997 4841 9.567848 GAAGCGAATTTCATAATGAGGTTAAAA 57.432 29.630 0.00 0.00 0.00 1.52
1998 4842 9.921637 AAGCGAATTTCATAATGAGGTTAAAAA 57.078 25.926 0.00 0.00 0.00 1.94
2013 4857 9.816787 TGAGGTTAAAAATAATTCCTAGGTTGT 57.183 29.630 9.08 0.00 0.00 3.32
2126 7308 5.767665 ACACATTTATTAGTGCCACTTGTGA 59.232 36.000 24.36 0.00 39.30 3.58
2264 7451 6.959639 TGGTAATTCATGCTTAATTCCTCC 57.040 37.500 0.00 0.00 0.00 4.30
2307 7494 3.451141 TCCAATGTTTTGTTGTGCCTC 57.549 42.857 0.00 0.00 0.00 4.70
2308 7495 2.762887 TCCAATGTTTTGTTGTGCCTCA 59.237 40.909 0.00 0.00 0.00 3.86
2314 7501 4.265893 TGTTTTGTTGTGCCTCAGTTAGA 58.734 39.130 0.00 0.00 0.00 2.10
2360 7548 5.186992 CCTAAACCCTTTCATTTTACCCCTG 59.813 44.000 0.00 0.00 0.00 4.45
2362 7550 3.774734 ACCCTTTCATTTTACCCCTGAC 58.225 45.455 0.00 0.00 0.00 3.51
2397 7589 4.033009 GGAATCCCCAAAATTCCTGATGT 58.967 43.478 7.48 0.00 45.80 3.06
2399 7591 5.840693 GGAATCCCCAAAATTCCTGATGTAT 59.159 40.000 7.48 0.00 45.80 2.29
2407 7599 7.198390 CCAAAATTCCTGATGTATTGTAGCTG 58.802 38.462 0.00 0.00 0.00 4.24
2408 7600 6.382869 AAATTCCTGATGTATTGTAGCTGC 57.617 37.500 0.00 0.00 0.00 5.25
2409 7601 4.486125 TTCCTGATGTATTGTAGCTGCA 57.514 40.909 0.00 0.00 0.00 4.41
2410 7602 4.486125 TCCTGATGTATTGTAGCTGCAA 57.514 40.909 19.84 19.84 0.00 4.08
2411 7603 4.445453 TCCTGATGTATTGTAGCTGCAAG 58.555 43.478 21.86 6.89 0.00 4.01
2412 7604 4.080919 TCCTGATGTATTGTAGCTGCAAGT 60.081 41.667 21.86 12.60 35.30 3.16
2413 7605 4.272018 CCTGATGTATTGTAGCTGCAAGTC 59.728 45.833 21.86 16.46 35.30 3.01
2414 7606 5.089970 TGATGTATTGTAGCTGCAAGTCT 57.910 39.130 21.86 8.70 35.30 3.24
2415 7607 5.491070 TGATGTATTGTAGCTGCAAGTCTT 58.509 37.500 21.86 14.30 35.30 3.01
2416 7608 5.939883 TGATGTATTGTAGCTGCAAGTCTTT 59.060 36.000 21.86 7.99 35.30 2.52
2417 7609 7.102993 TGATGTATTGTAGCTGCAAGTCTTTA 58.897 34.615 21.86 7.01 35.30 1.85
2418 7610 7.770433 TGATGTATTGTAGCTGCAAGTCTTTAT 59.230 33.333 21.86 10.33 35.30 1.40
2419 7611 7.921786 TGTATTGTAGCTGCAAGTCTTTATT 57.078 32.000 21.86 5.89 35.30 1.40
2420 7612 9.613428 ATGTATTGTAGCTGCAAGTCTTTATTA 57.387 29.630 21.86 4.93 35.30 0.98
2421 7613 9.613428 TGTATTGTAGCTGCAAGTCTTTATTAT 57.387 29.630 21.86 4.50 35.30 1.28
2424 7616 9.838339 ATTGTAGCTGCAAGTCTTTATTATACT 57.162 29.630 21.86 0.00 35.30 2.12
2425 7617 8.648557 TGTAGCTGCAAGTCTTTATTATACTG 57.351 34.615 0.43 0.00 35.30 2.74
2426 7618 6.610741 AGCTGCAAGTCTTTATTATACTGC 57.389 37.500 1.02 0.00 35.30 4.40
2427 7619 6.352516 AGCTGCAAGTCTTTATTATACTGCT 58.647 36.000 1.02 0.00 35.30 4.24
2428 7620 6.259608 AGCTGCAAGTCTTTATTATACTGCTG 59.740 38.462 1.02 0.00 35.30 4.41
2429 7621 6.258727 GCTGCAAGTCTTTATTATACTGCTGA 59.741 38.462 0.00 0.00 35.30 4.26
2430 7622 7.041508 GCTGCAAGTCTTTATTATACTGCTGAT 60.042 37.037 0.00 0.00 35.30 2.90
2431 7623 8.737168 TGCAAGTCTTTATTATACTGCTGATT 57.263 30.769 0.00 0.00 0.00 2.57
2432 7624 8.615211 TGCAAGTCTTTATTATACTGCTGATTG 58.385 33.333 0.00 0.00 0.00 2.67
2433 7625 8.616076 GCAAGTCTTTATTATACTGCTGATTGT 58.384 33.333 0.00 0.00 0.00 2.71
2434 7626 9.926751 CAAGTCTTTATTATACTGCTGATTGTG 57.073 33.333 0.00 0.00 0.00 3.33
2435 7627 9.672673 AAGTCTTTATTATACTGCTGATTGTGT 57.327 29.630 0.00 0.00 0.00 3.72
2436 7628 9.102757 AGTCTTTATTATACTGCTGATTGTGTG 57.897 33.333 0.00 0.00 0.00 3.82
2437 7629 8.338259 GTCTTTATTATACTGCTGATTGTGTGG 58.662 37.037 0.00 0.00 0.00 4.17
2438 7630 7.498900 TCTTTATTATACTGCTGATTGTGTGGG 59.501 37.037 0.00 0.00 0.00 4.61
2439 7631 4.835284 TTATACTGCTGATTGTGTGGGA 57.165 40.909 0.00 0.00 0.00 4.37
2440 7632 2.768253 TACTGCTGATTGTGTGGGAG 57.232 50.000 0.00 0.00 0.00 4.30
2441 7633 0.767375 ACTGCTGATTGTGTGGGAGT 59.233 50.000 0.00 0.00 0.00 3.85
2442 7634 1.162698 CTGCTGATTGTGTGGGAGTG 58.837 55.000 0.00 0.00 0.00 3.51
2443 7635 0.764271 TGCTGATTGTGTGGGAGTGA 59.236 50.000 0.00 0.00 0.00 3.41
2444 7636 1.271001 TGCTGATTGTGTGGGAGTGAG 60.271 52.381 0.00 0.00 0.00 3.51
2445 7637 1.446907 CTGATTGTGTGGGAGTGAGC 58.553 55.000 0.00 0.00 0.00 4.26
2446 7638 1.002888 CTGATTGTGTGGGAGTGAGCT 59.997 52.381 0.00 0.00 0.00 4.09
2447 7639 1.002430 TGATTGTGTGGGAGTGAGCTC 59.998 52.381 6.82 6.82 40.93 4.09
2448 7640 1.002430 GATTGTGTGGGAGTGAGCTCA 59.998 52.381 13.74 13.74 43.37 4.26
2449 7641 0.836606 TTGTGTGGGAGTGAGCTCAA 59.163 50.000 20.19 0.00 43.37 3.02
2450 7642 0.106708 TGTGTGGGAGTGAGCTCAAC 59.893 55.000 20.19 13.30 43.37 3.18
2451 7643 0.394565 GTGTGGGAGTGAGCTCAACT 59.605 55.000 20.19 17.49 43.37 3.16
2452 7644 1.131638 TGTGGGAGTGAGCTCAACTT 58.868 50.000 20.19 7.20 43.37 2.66
2453 7645 1.202687 TGTGGGAGTGAGCTCAACTTG 60.203 52.381 20.19 0.00 43.37 3.16
2454 7646 1.070758 GTGGGAGTGAGCTCAACTTGA 59.929 52.381 20.19 0.00 43.37 3.02
2455 7647 1.768275 TGGGAGTGAGCTCAACTTGAA 59.232 47.619 20.19 0.00 43.37 2.69
2456 7648 2.373169 TGGGAGTGAGCTCAACTTGAAT 59.627 45.455 20.19 0.00 43.37 2.57
2457 7649 3.582647 TGGGAGTGAGCTCAACTTGAATA 59.417 43.478 20.19 0.00 43.37 1.75
2458 7650 3.935828 GGGAGTGAGCTCAACTTGAATAC 59.064 47.826 20.19 2.18 43.37 1.89
2459 7651 3.935828 GGAGTGAGCTCAACTTGAATACC 59.064 47.826 20.19 10.14 43.37 2.73
2460 7652 3.935828 GAGTGAGCTCAACTTGAATACCC 59.064 47.826 20.19 0.78 41.29 3.69
2461 7653 2.673368 GTGAGCTCAACTTGAATACCCG 59.327 50.000 20.19 0.00 0.00 5.28
2462 7654 2.565391 TGAGCTCAACTTGAATACCCGA 59.435 45.455 15.67 0.00 0.00 5.14
2463 7655 3.190874 GAGCTCAACTTGAATACCCGAG 58.809 50.000 9.40 0.00 0.00 4.63
2464 7656 2.567615 AGCTCAACTTGAATACCCGAGT 59.432 45.455 0.00 0.00 32.32 4.18
2465 7657 2.930682 GCTCAACTTGAATACCCGAGTC 59.069 50.000 0.00 0.00 30.71 3.36
2466 7658 3.616560 GCTCAACTTGAATACCCGAGTCA 60.617 47.826 0.00 0.00 30.71 3.41
2467 7659 4.759782 CTCAACTTGAATACCCGAGTCAT 58.240 43.478 0.00 0.00 30.90 3.06
2468 7660 5.160607 TCAACTTGAATACCCGAGTCATT 57.839 39.130 0.00 0.00 30.90 2.57
2469 7661 4.935205 TCAACTTGAATACCCGAGTCATTG 59.065 41.667 0.00 0.00 30.90 2.82
2470 7662 4.819105 ACTTGAATACCCGAGTCATTGA 57.181 40.909 0.00 0.00 30.90 2.57
2471 7663 5.160607 ACTTGAATACCCGAGTCATTGAA 57.839 39.130 0.00 0.00 30.90 2.69
2472 7664 5.745227 ACTTGAATACCCGAGTCATTGAAT 58.255 37.500 0.00 0.00 30.90 2.57
2473 7665 6.180472 ACTTGAATACCCGAGTCATTGAATT 58.820 36.000 0.00 0.00 30.90 2.17
2474 7666 7.335627 ACTTGAATACCCGAGTCATTGAATTA 58.664 34.615 0.00 0.00 30.90 1.40
2475 7667 7.993183 ACTTGAATACCCGAGTCATTGAATTAT 59.007 33.333 0.00 0.00 30.90 1.28
2476 7668 9.489084 CTTGAATACCCGAGTCATTGAATTATA 57.511 33.333 0.00 0.00 30.90 0.98
2477 7669 9.839817 TTGAATACCCGAGTCATTGAATTATAA 57.160 29.630 0.00 0.00 30.90 0.98
2483 7675 9.490379 ACCCGAGTCATTGAATTATAATAACTC 57.510 33.333 0.00 7.62 0.00 3.01
2484 7676 8.936864 CCCGAGTCATTGAATTATAATAACTCC 58.063 37.037 10.45 0.00 0.00 3.85
2485 7677 8.648097 CCGAGTCATTGAATTATAATAACTCCG 58.352 37.037 10.45 7.33 0.00 4.63
2486 7678 8.648097 CGAGTCATTGAATTATAATAACTCCGG 58.352 37.037 0.00 0.00 0.00 5.14
2487 7679 8.848474 AGTCATTGAATTATAATAACTCCGGG 57.152 34.615 0.00 0.00 0.00 5.73
2488 7680 8.437575 AGTCATTGAATTATAATAACTCCGGGT 58.562 33.333 0.00 0.00 0.00 5.28
2489 7681 9.063615 GTCATTGAATTATAATAACTCCGGGTT 57.936 33.333 0.00 7.63 41.54 4.11
2493 7685 8.907222 TGAATTATAATAACTCCGGGTTAACC 57.093 34.615 16.85 16.85 42.74 2.85
2506 7698 3.460362 GGTTAACCCTTTTACGCGAAG 57.540 47.619 15.93 6.00 0.00 3.79
2507 7699 2.807967 GGTTAACCCTTTTACGCGAAGT 59.192 45.455 15.93 0.00 0.00 3.01
2509 7701 2.243602 AACCCTTTTACGCGAAGTGA 57.756 45.000 15.93 0.00 43.07 3.41
2510 7702 1.792006 ACCCTTTTACGCGAAGTGAG 58.208 50.000 15.93 3.59 43.07 3.51
2511 7703 1.076332 CCCTTTTACGCGAAGTGAGG 58.924 55.000 15.93 12.89 43.07 3.86
2512 7704 1.337447 CCCTTTTACGCGAAGTGAGGA 60.337 52.381 15.93 0.00 43.07 3.71
2513 7705 1.725164 CCTTTTACGCGAAGTGAGGAC 59.275 52.381 15.93 0.00 43.07 3.85
2514 7706 2.400399 CTTTTACGCGAAGTGAGGACA 58.600 47.619 15.93 0.00 43.07 4.02
2515 7707 2.512485 TTTACGCGAAGTGAGGACAA 57.488 45.000 15.93 0.00 43.07 3.18
2516 7708 2.512485 TTACGCGAAGTGAGGACAAA 57.488 45.000 15.93 0.00 43.07 2.83
2517 7709 2.512485 TACGCGAAGTGAGGACAAAA 57.488 45.000 15.93 0.00 43.07 2.44
2518 7710 1.217882 ACGCGAAGTGAGGACAAAAG 58.782 50.000 15.93 0.00 43.07 2.27
2519 7711 0.110644 CGCGAAGTGAGGACAAAAGC 60.111 55.000 0.00 0.00 43.07 3.51
2520 7712 0.110644 GCGAAGTGAGGACAAAAGCG 60.111 55.000 0.00 0.00 0.00 4.68
2521 7713 1.217882 CGAAGTGAGGACAAAAGCGT 58.782 50.000 0.00 0.00 0.00 5.07
2522 7714 2.400399 CGAAGTGAGGACAAAAGCGTA 58.600 47.619 0.00 0.00 0.00 4.42
2523 7715 2.798283 CGAAGTGAGGACAAAAGCGTAA 59.202 45.455 0.00 0.00 0.00 3.18
2524 7716 3.120991 CGAAGTGAGGACAAAAGCGTAAG 60.121 47.826 0.00 0.00 43.44 2.34
2525 7717 2.767505 AGTGAGGACAAAAGCGTAAGG 58.232 47.619 0.00 0.00 38.28 2.69
2526 7718 1.197036 GTGAGGACAAAAGCGTAAGGC 59.803 52.381 0.00 0.00 44.05 4.35
2535 7727 4.551729 GCGTAAGGCTGCCCATAA 57.448 55.556 16.57 0.00 39.11 1.90
2536 7728 3.021451 GCGTAAGGCTGCCCATAAT 57.979 52.632 16.57 0.00 39.11 1.28
2537 7729 0.593128 GCGTAAGGCTGCCCATAATG 59.407 55.000 16.57 5.11 39.11 1.90
2538 7730 1.238439 CGTAAGGCTGCCCATAATGG 58.762 55.000 16.57 0.00 37.25 3.16
2551 7743 4.853924 CCATAATGGGGAATGCTTGTAC 57.146 45.455 0.00 0.00 32.67 2.90
2553 7745 4.520492 CCATAATGGGGAATGCTTGTACTC 59.480 45.833 0.00 0.00 32.67 2.59
2565 7757 2.415625 GCTTGTACTCACCTACCGTCAG 60.416 54.545 0.00 0.00 0.00 3.51
2566 7758 2.574006 TGTACTCACCTACCGTCAGT 57.426 50.000 0.00 0.00 0.00 3.41
2567 7759 2.430465 TGTACTCACCTACCGTCAGTC 58.570 52.381 0.00 0.00 0.00 3.51
2571 7763 3.437795 ACCTACCGTCAGTCGCCG 61.438 66.667 0.00 0.00 38.35 6.46
2572 7764 3.129502 CCTACCGTCAGTCGCCGA 61.130 66.667 0.00 0.00 38.35 5.54
2573 7765 2.099831 CTACCGTCAGTCGCCGAC 59.900 66.667 9.71 9.71 38.35 4.79
2575 7767 2.845861 CTACCGTCAGTCGCCGACAC 62.846 65.000 20.65 8.82 38.35 3.67
2577 7769 4.039357 CGTCAGTCGCCGACACCT 62.039 66.667 20.65 0.00 34.60 4.00
2578 7770 2.126424 GTCAGTCGCCGACACCTC 60.126 66.667 20.65 3.16 34.60 3.85
2579 7771 3.733960 TCAGTCGCCGACACCTCG 61.734 66.667 20.65 2.32 39.83 4.63
2590 7782 3.479203 CACCTCGGGCTGCCCATA 61.479 66.667 35.22 22.14 45.83 2.74
2591 7783 2.690881 ACCTCGGGCTGCCCATAA 60.691 61.111 35.22 19.63 45.83 1.90
2592 7784 2.078665 ACCTCGGGCTGCCCATAAT 61.079 57.895 35.22 16.38 45.83 1.28
2593 7785 1.601759 CCTCGGGCTGCCCATAATG 60.602 63.158 35.22 19.70 45.83 1.90
2594 7786 1.601759 CTCGGGCTGCCCATAATGG 60.602 63.158 35.22 18.97 45.83 3.16
2608 7800 4.985538 CCATAATGGGGTATGCTTGTACT 58.014 43.478 0.00 0.00 32.67 2.73
2609 7801 5.003804 CCATAATGGGGTATGCTTGTACTC 58.996 45.833 0.00 0.00 32.67 2.59
2610 7802 5.456042 CCATAATGGGGTATGCTTGTACTCA 60.456 44.000 0.00 0.00 32.67 3.41
2611 7803 3.560636 ATGGGGTATGCTTGTACTCAC 57.439 47.619 0.00 0.00 0.00 3.51
2612 7804 1.557832 TGGGGTATGCTTGTACTCACC 59.442 52.381 0.00 0.00 0.00 4.02
2613 7805 1.838077 GGGGTATGCTTGTACTCACCT 59.162 52.381 0.00 0.00 0.00 4.00
2614 7806 3.036091 GGGGTATGCTTGTACTCACCTA 58.964 50.000 0.00 0.00 0.00 3.08
2615 7807 3.181468 GGGGTATGCTTGTACTCACCTAC 60.181 52.174 0.00 0.00 0.00 3.18
2616 7808 3.181468 GGGTATGCTTGTACTCACCTACC 60.181 52.174 0.00 0.67 0.00 3.18
2617 7809 3.449737 GGTATGCTTGTACTCACCTACCA 59.550 47.826 0.00 0.00 0.00 3.25
2618 7810 4.101119 GGTATGCTTGTACTCACCTACCAT 59.899 45.833 0.00 0.00 0.00 3.55
2619 7811 3.887621 TGCTTGTACTCACCTACCATC 57.112 47.619 0.00 0.00 0.00 3.51
2620 7812 3.169908 TGCTTGTACTCACCTACCATCA 58.830 45.455 0.00 0.00 0.00 3.07
2621 7813 3.195610 TGCTTGTACTCACCTACCATCAG 59.804 47.826 0.00 0.00 0.00 2.90
2622 7814 3.786635 CTTGTACTCACCTACCATCAGC 58.213 50.000 0.00 0.00 0.00 4.26
2623 7815 2.108168 TGTACTCACCTACCATCAGCC 58.892 52.381 0.00 0.00 0.00 4.85
2624 7816 1.067212 GTACTCACCTACCATCAGCCG 59.933 57.143 0.00 0.00 0.00 5.52
2625 7817 0.614979 ACTCACCTACCATCAGCCGT 60.615 55.000 0.00 0.00 0.00 5.68
2626 7818 0.103208 CTCACCTACCATCAGCCGTC 59.897 60.000 0.00 0.00 0.00 4.79
2627 7819 0.613572 TCACCTACCATCAGCCGTCA 60.614 55.000 0.00 0.00 0.00 4.35
2628 7820 0.179100 CACCTACCATCAGCCGTCAG 60.179 60.000 0.00 0.00 0.00 3.51
2629 7821 0.324368 ACCTACCATCAGCCGTCAGA 60.324 55.000 0.00 0.00 0.00 3.27
2630 7822 0.103208 CCTACCATCAGCCGTCAGAC 59.897 60.000 0.00 0.00 0.00 3.51
2631 7823 0.817654 CTACCATCAGCCGTCAGACA 59.182 55.000 0.41 0.00 0.00 3.41
2632 7824 0.530744 TACCATCAGCCGTCAGACAC 59.469 55.000 0.41 0.00 0.00 3.67
2633 7825 1.448540 CCATCAGCCGTCAGACACC 60.449 63.158 0.41 0.00 0.00 4.16
2634 7826 1.293179 CATCAGCCGTCAGACACCA 59.707 57.895 0.41 0.00 0.00 4.17
2635 7827 1.016130 CATCAGCCGTCAGACACCAC 61.016 60.000 0.41 0.00 0.00 4.16
2636 7828 2.492449 ATCAGCCGTCAGACACCACG 62.492 60.000 0.41 0.00 35.72 4.94
2640 7832 3.991051 CGTCAGACACCACGGGCT 61.991 66.667 0.41 0.00 32.19 5.19
2641 7833 2.357517 GTCAGACACCACGGGCTG 60.358 66.667 0.00 0.00 0.00 4.85
2642 7834 4.314440 TCAGACACCACGGGCTGC 62.314 66.667 0.00 0.00 0.00 5.25
2647 7839 4.108299 CACCACGGGCTGCCCATA 62.108 66.667 35.22 0.00 45.83 2.74
2648 7840 3.334891 ACCACGGGCTGCCCATAA 61.335 61.111 35.22 0.00 45.83 1.90
2649 7841 2.195683 CCACGGGCTGCCCATAAT 59.804 61.111 35.22 16.02 45.83 1.28
2650 7842 2.195567 CCACGGGCTGCCCATAATG 61.196 63.158 35.22 25.12 45.83 1.90
2651 7843 2.195567 CACGGGCTGCCCATAATGG 61.196 63.158 35.22 20.83 45.83 3.16
2662 7854 1.416243 CCATAATGGGGCATGCTTGT 58.584 50.000 18.92 0.00 32.67 3.16
2663 7855 2.596346 CCATAATGGGGCATGCTTGTA 58.404 47.619 18.92 2.22 32.67 2.41
2664 7856 2.297033 CCATAATGGGGCATGCTTGTAC 59.703 50.000 18.92 0.00 32.67 2.90
2665 7857 3.225104 CATAATGGGGCATGCTTGTACT 58.775 45.455 18.92 0.89 0.00 2.73
2666 7858 1.767759 AATGGGGCATGCTTGTACTC 58.232 50.000 18.92 0.00 0.00 2.59
2667 7859 0.625316 ATGGGGCATGCTTGTACTCA 59.375 50.000 18.92 6.80 0.00 3.41
2668 7860 0.322456 TGGGGCATGCTTGTACTCAC 60.322 55.000 18.92 0.00 0.00 3.51
2669 7861 1.032114 GGGGCATGCTTGTACTCACC 61.032 60.000 18.92 6.47 0.00 4.02
2670 7862 0.035056 GGGCATGCTTGTACTCACCT 60.035 55.000 18.92 0.00 0.00 4.00
2671 7863 1.209504 GGGCATGCTTGTACTCACCTA 59.790 52.381 18.92 0.00 0.00 3.08
2672 7864 2.280628 GGCATGCTTGTACTCACCTAC 58.719 52.381 18.92 0.00 0.00 3.18
2673 7865 2.280628 GCATGCTTGTACTCACCTACC 58.719 52.381 11.37 0.00 0.00 3.18
2674 7866 2.540515 CATGCTTGTACTCACCTACCG 58.459 52.381 0.00 0.00 0.00 4.02
2675 7867 1.624336 TGCTTGTACTCACCTACCGT 58.376 50.000 0.00 0.00 0.00 4.83
2676 7868 1.542915 TGCTTGTACTCACCTACCGTC 59.457 52.381 0.00 0.00 0.00 4.79
2677 7869 1.542915 GCTTGTACTCACCTACCGTCA 59.457 52.381 0.00 0.00 0.00 4.35
2678 7870 2.415625 GCTTGTACTCACCTACCGTCAG 60.416 54.545 0.00 0.00 0.00 3.51
2679 7871 2.574006 TGTACTCACCTACCGTCAGT 57.426 50.000 0.00 0.00 0.00 3.41
2680 7872 2.430465 TGTACTCACCTACCGTCAGTC 58.570 52.381 0.00 0.00 0.00 3.51
2681 7873 1.396301 GTACTCACCTACCGTCAGTCG 59.604 57.143 0.00 0.00 39.52 4.18
2682 7874 0.250640 ACTCACCTACCGTCAGTCGT 60.251 55.000 0.00 0.00 37.94 4.34
2683 7875 0.447011 CTCACCTACCGTCAGTCGTC 59.553 60.000 0.00 0.00 37.94 4.20
2684 7876 0.250424 TCACCTACCGTCAGTCGTCA 60.250 55.000 0.00 0.00 37.94 4.35
2685 7877 0.168348 CACCTACCGTCAGTCGTCAG 59.832 60.000 0.00 0.00 37.94 3.51
2686 7878 0.035881 ACCTACCGTCAGTCGTCAGA 59.964 55.000 0.00 0.00 37.94 3.27
2697 7889 2.333389 GTCGTCAGACACCTACACTG 57.667 55.000 0.41 0.00 46.32 3.66
2698 7890 0.596577 TCGTCAGACACCTACACTGC 59.403 55.000 0.41 0.00 0.00 4.40
2699 7891 0.729478 CGTCAGACACCTACACTGCG 60.729 60.000 0.41 0.00 0.00 5.18
2700 7892 1.009389 GTCAGACACCTACACTGCGC 61.009 60.000 0.00 0.00 0.00 6.09
2701 7893 1.179174 TCAGACACCTACACTGCGCT 61.179 55.000 9.73 0.00 0.00 5.92
2702 7894 0.526211 CAGACACCTACACTGCGCTA 59.474 55.000 9.73 0.00 0.00 4.26
2703 7895 1.067846 CAGACACCTACACTGCGCTAA 60.068 52.381 9.73 0.00 0.00 3.09
2704 7896 1.825474 AGACACCTACACTGCGCTAAT 59.175 47.619 9.73 0.00 0.00 1.73
2705 7897 1.927174 GACACCTACACTGCGCTAATG 59.073 52.381 9.73 6.77 0.00 1.90
2706 7898 1.275291 ACACCTACACTGCGCTAATGT 59.725 47.619 9.73 12.78 0.00 2.71
2707 7899 1.660607 CACCTACACTGCGCTAATGTG 59.339 52.381 18.10 17.51 37.67 3.21
2708 7900 1.290203 CCTACACTGCGCTAATGTGG 58.710 55.000 18.10 15.54 36.16 4.17
2709 7901 1.134818 CCTACACTGCGCTAATGTGGA 60.135 52.381 18.93 13.49 36.16 4.02
2710 7902 2.483714 CCTACACTGCGCTAATGTGGAT 60.484 50.000 18.93 7.56 36.16 3.41
2711 7903 2.979814 ACACTGCGCTAATGTGGATA 57.020 45.000 9.73 0.00 36.16 2.59
2712 7904 3.260475 ACACTGCGCTAATGTGGATAA 57.740 42.857 9.73 0.00 36.16 1.75
2713 7905 3.198068 ACACTGCGCTAATGTGGATAAG 58.802 45.455 9.73 0.00 36.16 1.73
2714 7906 3.198068 CACTGCGCTAATGTGGATAAGT 58.802 45.455 9.73 0.00 0.00 2.24
2715 7907 3.623060 CACTGCGCTAATGTGGATAAGTT 59.377 43.478 9.73 0.00 0.00 2.66
2716 7908 3.623060 ACTGCGCTAATGTGGATAAGTTG 59.377 43.478 9.73 0.00 0.00 3.16
2720 7912 3.002656 CGCTAATGTGGATAAGTTGCCTG 59.997 47.826 0.00 0.00 0.00 4.85
2724 7916 0.676782 GTGGATAAGTTGCCTGCCGT 60.677 55.000 0.00 0.00 0.00 5.68
2748 7940 1.687014 ACCCCGGCGGTAGAAAAAT 59.313 52.632 26.32 0.00 45.97 1.82
2756 7948 3.001330 CGGCGGTAGAAAAATGTCAGATC 59.999 47.826 0.00 0.00 0.00 2.75
2760 7952 5.463724 GCGGTAGAAAAATGTCAGATCCTAG 59.536 44.000 0.00 0.00 0.00 3.02
2761 7953 5.986135 CGGTAGAAAAATGTCAGATCCTAGG 59.014 44.000 0.82 0.82 0.00 3.02
2762 7954 6.183360 CGGTAGAAAAATGTCAGATCCTAGGA 60.183 42.308 15.46 15.46 0.00 2.94
2763 7955 7.565680 GGTAGAAAAATGTCAGATCCTAGGAA 58.434 38.462 17.30 0.00 0.00 3.36
2770 7962 8.839310 AAATGTCAGATCCTAGGAATAATTCG 57.161 34.615 17.30 5.37 0.00 3.34
2773 7966 7.434492 TGTCAGATCCTAGGAATAATTCGAAC 58.566 38.462 17.30 11.75 0.00 3.95
2782 7975 8.645110 CCTAGGAATAATTCGAACTAGGGTTAA 58.355 37.037 21.32 0.00 42.30 2.01
2783 7976 9.694137 CTAGGAATAATTCGAACTAGGGTTAAG 57.306 37.037 0.00 0.00 35.58 1.85
2788 7981 6.600882 AATTCGAACTAGGGTTAAGTCTGA 57.399 37.500 0.00 0.00 35.58 3.27
2791 7984 4.699257 TCGAACTAGGGTTAAGTCTGACTC 59.301 45.833 11.31 0.00 35.58 3.36
2799 7992 5.701290 AGGGTTAAGTCTGACTCAATTTTCG 59.299 40.000 11.31 0.00 0.00 3.46
2801 7994 5.049680 GGTTAAGTCTGACTCAATTTTCGCA 60.050 40.000 11.31 0.00 0.00 5.10
2802 7995 6.427150 GTTAAGTCTGACTCAATTTTCGCAA 58.573 36.000 11.31 0.00 0.00 4.85
2818 8011 1.566404 GCAAAAGGGTCAAAACACCG 58.434 50.000 0.00 0.00 37.30 4.94
2854 8047 2.808543 CAGATGGGCGGACTTAATTAGC 59.191 50.000 0.00 0.00 0.00 3.09
2889 8082 0.028505 CACGGCTGCTGCATGATTAC 59.971 55.000 17.89 0.00 41.91 1.89
2919 8126 0.324285 AGCAGAGCCAGGAAGAACAG 59.676 55.000 0.00 0.00 0.00 3.16
2946 8153 1.812571 GGCTACACACACCATTTGGAG 59.187 52.381 3.01 0.00 38.94 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.938838 TGGTCACGAGAATTTTGGGTT 58.061 42.857 0.00 0.00 0.00 4.11
25 26 6.877611 AACTGTTAAAATGGTCACGAGAAT 57.122 33.333 0.00 0.00 0.00 2.40
53 54 5.189659 CCAATCGGGTTTTACAGTTTTCA 57.810 39.130 0.00 0.00 0.00 2.69
109 110 6.983307 ACCAAATGACATTTCGACAAATTTCA 59.017 30.769 10.52 2.14 41.02 2.69
131 132 1.070105 CGAGAAACCGGTTGGACCA 59.930 57.895 23.08 0.00 38.47 4.02
139 143 2.928116 GAGTGGTAAATCGAGAAACCGG 59.072 50.000 0.00 0.00 34.60 5.28
215 219 6.420008 AGTCATATGCTCCGTTTAATTACGAC 59.580 38.462 2.33 0.00 43.99 4.34
228 234 7.761409 TGAAAAACATTGTAGTCATATGCTCC 58.239 34.615 0.00 0.00 0.00 4.70
330 336 1.138266 GAACGGTATGGAGCTAGCCAA 59.862 52.381 12.13 0.00 42.16 4.52
339 345 1.315690 CTAGCCTCGAACGGTATGGA 58.684 55.000 0.00 0.00 0.00 3.41
342 348 0.754217 TGGCTAGCCTCGAACGGTAT 60.754 55.000 33.07 0.00 36.94 2.73
343 349 0.966875 TTGGCTAGCCTCGAACGGTA 60.967 55.000 33.07 7.98 36.94 4.02
347 353 0.741221 CCAGTTGGCTAGCCTCGAAC 60.741 60.000 33.07 26.95 36.94 3.95
352 358 1.908483 GCTACCAGTTGGCTAGCCT 59.092 57.895 33.07 15.40 38.10 4.58
363 369 3.077556 AGGAGGTGCGGCTACCAG 61.078 66.667 19.08 0.00 43.37 4.00
382 388 2.612115 CAGTTCTCCTGGGGGCCT 60.612 66.667 0.84 0.00 37.54 5.19
426 432 0.035343 GGCCTCCAAACCCTGACTAC 60.035 60.000 0.00 0.00 0.00 2.73
430 436 2.538141 CCTGGCCTCCAAACCCTGA 61.538 63.158 3.32 0.00 30.80 3.86
432 438 3.268032 CCCTGGCCTCCAAACCCT 61.268 66.667 3.32 0.00 30.80 4.34
446 472 1.002134 CGGCCAAATCAGACACCCT 60.002 57.895 2.24 0.00 0.00 4.34
450 476 0.394216 CATCCCGGCCAAATCAGACA 60.394 55.000 2.24 0.00 0.00 3.41
507 1267 1.270518 CCATAGCTCATTCCACCCTCG 60.271 57.143 0.00 0.00 0.00 4.63
524 1284 1.920351 ACCTTTTATCCCGTGGTCCAT 59.080 47.619 0.00 0.00 0.00 3.41
533 1293 7.842743 AGGAAATAACCCTTAACCTTTTATCCC 59.157 37.037 0.00 0.00 0.00 3.85
537 1297 9.886337 AAAGAGGAAATAACCCTTAACCTTTTA 57.114 29.630 0.00 0.00 33.36 1.52
706 1491 1.741055 GCACATGATCGGTTTCCGGTA 60.741 52.381 0.00 0.00 42.08 4.02
711 1496 5.879237 TGATTTAAGCACATGATCGGTTTC 58.121 37.500 0.00 0.00 0.00 2.78
723 1508 5.460419 CGGTCTGATACTCTGATTTAAGCAC 59.540 44.000 0.00 0.00 0.00 4.40
734 1519 1.285373 ACAGGTCCGGTCTGATACTCT 59.715 52.381 25.96 7.22 36.22 3.24
735 1520 1.765230 ACAGGTCCGGTCTGATACTC 58.235 55.000 25.96 2.82 36.22 2.59
736 1521 2.233305 AACAGGTCCGGTCTGATACT 57.767 50.000 25.96 8.08 36.22 2.12
737 1522 3.000727 CAAAACAGGTCCGGTCTGATAC 58.999 50.000 25.96 7.29 36.22 2.24
738 1523 2.901192 TCAAAACAGGTCCGGTCTGATA 59.099 45.455 25.96 9.67 36.22 2.15
739 1524 1.697432 TCAAAACAGGTCCGGTCTGAT 59.303 47.619 25.96 16.09 36.22 2.90
740 1525 1.124780 TCAAAACAGGTCCGGTCTGA 58.875 50.000 25.96 7.97 36.22 3.27
741 1526 1.226746 GTCAAAACAGGTCCGGTCTG 58.773 55.000 20.36 20.36 38.16 3.51
742 1527 0.249741 CGTCAAAACAGGTCCGGTCT 60.250 55.000 0.00 0.00 0.00 3.85
783 1568 3.314693 CCACTAGATGGGGCCTTTAGTA 58.685 50.000 0.84 0.00 45.95 1.82
785 1570 2.938956 CCACTAGATGGGGCCTTTAG 57.061 55.000 0.84 3.19 45.95 1.85
848 1675 3.682292 GAAGGCGGCAGGAATCGGT 62.682 63.158 13.08 0.00 0.00 4.69
866 1694 6.091441 GGTTCCGCTAATTGAGAATGCTATAG 59.909 42.308 0.00 0.00 0.00 1.31
869 1697 4.127171 GGTTCCGCTAATTGAGAATGCTA 58.873 43.478 0.00 0.00 0.00 3.49
870 1698 2.945668 GGTTCCGCTAATTGAGAATGCT 59.054 45.455 0.00 0.00 0.00 3.79
871 1699 2.945668 AGGTTCCGCTAATTGAGAATGC 59.054 45.455 0.00 0.00 0.00 3.56
872 1700 6.867662 ATTAGGTTCCGCTAATTGAGAATG 57.132 37.500 0.00 0.00 0.00 2.67
873 1701 7.661847 CCTTATTAGGTTCCGCTAATTGAGAAT 59.338 37.037 0.00 0.00 36.74 2.40
874 1702 6.990349 CCTTATTAGGTTCCGCTAATTGAGAA 59.010 38.462 0.00 0.00 36.74 2.87
876 1704 5.701290 CCCTTATTAGGTTCCGCTAATTGAG 59.299 44.000 0.00 0.00 40.19 3.02
877 1705 5.617252 CCCTTATTAGGTTCCGCTAATTGA 58.383 41.667 0.00 0.00 40.19 2.57
878 1706 4.215613 GCCCTTATTAGGTTCCGCTAATTG 59.784 45.833 0.00 0.00 40.19 2.32
916 1758 1.092345 GCTCCTGATCCTTCGGTTGC 61.092 60.000 0.00 0.00 0.00 4.17
917 1759 0.539051 AGCTCCTGATCCTTCGGTTG 59.461 55.000 0.00 0.00 0.00 3.77
920 1762 1.361993 CGAGCTCCTGATCCTTCGG 59.638 63.158 8.47 0.00 0.00 4.30
925 1767 3.368948 GGAATAATCCGAGCTCCTGATCC 60.369 52.174 8.47 5.46 35.59 3.36
926 1768 3.855858 GGAATAATCCGAGCTCCTGATC 58.144 50.000 8.47 0.00 35.59 2.92
938 1811 6.719365 CGTGTGAAAATCAGAGGAATAATCC 58.281 40.000 0.00 0.00 46.98 3.01
971 1844 2.354259 GAGCTCACTCCATCCAAAGTG 58.646 52.381 9.40 0.00 43.41 3.16
972 1845 1.066573 CGAGCTCACTCCATCCAAAGT 60.067 52.381 15.40 0.00 40.03 2.66
973 1846 1.205655 TCGAGCTCACTCCATCCAAAG 59.794 52.381 15.40 0.00 40.03 2.77
974 1847 1.266178 TCGAGCTCACTCCATCCAAA 58.734 50.000 15.40 0.00 40.03 3.28
975 1848 1.410517 GATCGAGCTCACTCCATCCAA 59.589 52.381 15.40 0.00 40.03 3.53
976 1849 1.035923 GATCGAGCTCACTCCATCCA 58.964 55.000 15.40 0.00 40.03 3.41
981 1854 2.725008 CCCGATCGAGCTCACTCC 59.275 66.667 18.66 0.00 40.03 3.85
1023 1904 2.123897 AAGTGGTGGTGGTGGTGC 60.124 61.111 0.00 0.00 0.00 5.01
1394 2293 3.578688 GTGGCATCCATTTGAGAAACAC 58.421 45.455 0.00 0.00 35.28 3.32
1395 2294 2.562298 GGTGGCATCCATTTGAGAAACA 59.438 45.455 0.00 0.00 35.28 2.83
1396 2295 2.562298 TGGTGGCATCCATTTGAGAAAC 59.438 45.455 0.00 0.00 35.28 2.78
1399 2298 2.832643 ATGGTGGCATCCATTTGAGA 57.167 45.000 13.61 0.00 44.75 3.27
1412 2320 6.971527 TCGTAGTACAATTGTTAATGGTGG 57.028 37.500 17.78 0.00 0.00 4.61
1413 2321 8.500773 AGTTTCGTAGTACAATTGTTAATGGTG 58.499 33.333 17.78 1.83 0.00 4.17
1621 2675 6.736243 GCACCATAGTACATCAGAGGAAGTAC 60.736 46.154 0.00 2.90 44.52 2.73
1651 2727 1.676746 CAGGGTCAGATCCTGCATTG 58.323 55.000 17.28 0.00 44.29 2.82
1922 2998 1.545582 CCTGGGTACTTGTTGGCAATG 59.454 52.381 1.92 0.00 33.65 2.82
1987 4831 9.816787 ACAACCTAGGAATTATTTTTAACCTCA 57.183 29.630 17.98 0.00 0.00 3.86
1994 4838 8.929487 TCAACCAACAACCTAGGAATTATTTTT 58.071 29.630 17.98 0.00 0.00 1.94
1995 4839 8.485578 TCAACCAACAACCTAGGAATTATTTT 57.514 30.769 17.98 0.00 0.00 1.82
1997 4841 7.673926 ACATCAACCAACAACCTAGGAATTATT 59.326 33.333 17.98 0.00 0.00 1.40
1998 4842 7.122650 CACATCAACCAACAACCTAGGAATTAT 59.877 37.037 17.98 0.00 0.00 1.28
1999 4843 6.432783 CACATCAACCAACAACCTAGGAATTA 59.567 38.462 17.98 0.00 0.00 1.40
2000 4844 5.243730 CACATCAACCAACAACCTAGGAATT 59.756 40.000 17.98 3.30 0.00 2.17
2002 4846 4.141287 CACATCAACCAACAACCTAGGAA 58.859 43.478 17.98 0.00 0.00 3.36
2003 4847 3.137544 ACACATCAACCAACAACCTAGGA 59.862 43.478 17.98 0.00 0.00 2.94
2004 4848 3.486383 ACACATCAACCAACAACCTAGG 58.514 45.455 7.41 7.41 0.00 3.02
2005 4849 6.349280 CCAATACACATCAACCAACAACCTAG 60.349 42.308 0.00 0.00 0.00 3.02
2006 4850 5.475220 CCAATACACATCAACCAACAACCTA 59.525 40.000 0.00 0.00 0.00 3.08
2008 4852 4.279671 TCCAATACACATCAACCAACAACC 59.720 41.667 0.00 0.00 0.00 3.77
2009 4853 5.446143 TCCAATACACATCAACCAACAAC 57.554 39.130 0.00 0.00 0.00 3.32
2010 4854 7.231519 TGTTATCCAATACACATCAACCAACAA 59.768 33.333 0.00 0.00 0.00 2.83
2012 4856 7.151999 TGTTATCCAATACACATCAACCAAC 57.848 36.000 0.00 0.00 0.00 3.77
2013 4857 7.953005 ATGTTATCCAATACACATCAACCAA 57.047 32.000 0.00 0.00 0.00 3.67
2110 7292 6.886459 ACTAATTGATCACAAGTGGCACTAAT 59.114 34.615 22.37 11.94 39.46 1.73
2252 7439 6.884836 TCAAGACCTAAAAGGAGGAATTAAGC 59.115 38.462 0.00 0.00 37.67 3.09
2301 7488 6.493116 CATCAATTCATTCTAACTGAGGCAC 58.507 40.000 0.00 0.00 0.00 5.01
2314 7501 7.427989 AGGGTTTCATTAGCATCAATTCATT 57.572 32.000 0.00 0.00 0.00 2.57
2360 7548 4.445019 GGGGATTCCTTCTATGGTTCTGTC 60.445 50.000 2.01 0.00 0.00 3.51
2362 7550 3.459598 TGGGGATTCCTTCTATGGTTCTG 59.540 47.826 2.01 0.00 36.20 3.02
2395 7587 7.921786 AATAAAGACTTGCAGCTACAATACA 57.078 32.000 0.00 0.00 0.00 2.29
2399 7591 9.098355 CAGTATAATAAAGACTTGCAGCTACAA 57.902 33.333 0.00 0.00 0.00 2.41
2407 7599 8.616076 ACAATCAGCAGTATAATAAAGACTTGC 58.384 33.333 0.00 0.00 0.00 4.01
2408 7600 9.926751 CACAATCAGCAGTATAATAAAGACTTG 57.073 33.333 0.00 0.00 0.00 3.16
2409 7601 9.672673 ACACAATCAGCAGTATAATAAAGACTT 57.327 29.630 0.00 0.00 0.00 3.01
2410 7602 9.102757 CACACAATCAGCAGTATAATAAAGACT 57.897 33.333 0.00 0.00 0.00 3.24
2411 7603 8.338259 CCACACAATCAGCAGTATAATAAAGAC 58.662 37.037 0.00 0.00 0.00 3.01
2412 7604 7.498900 CCCACACAATCAGCAGTATAATAAAGA 59.501 37.037 0.00 0.00 0.00 2.52
2413 7605 7.498900 TCCCACACAATCAGCAGTATAATAAAG 59.501 37.037 0.00 0.00 0.00 1.85
2414 7606 7.342581 TCCCACACAATCAGCAGTATAATAAA 58.657 34.615 0.00 0.00 0.00 1.40
2415 7607 6.894682 TCCCACACAATCAGCAGTATAATAA 58.105 36.000 0.00 0.00 0.00 1.40
2416 7608 6.099701 ACTCCCACACAATCAGCAGTATAATA 59.900 38.462 0.00 0.00 0.00 0.98
2417 7609 5.104360 ACTCCCACACAATCAGCAGTATAAT 60.104 40.000 0.00 0.00 0.00 1.28
2418 7610 4.225042 ACTCCCACACAATCAGCAGTATAA 59.775 41.667 0.00 0.00 0.00 0.98
2419 7611 3.774766 ACTCCCACACAATCAGCAGTATA 59.225 43.478 0.00 0.00 0.00 1.47
2420 7612 2.573462 ACTCCCACACAATCAGCAGTAT 59.427 45.455 0.00 0.00 0.00 2.12
2421 7613 1.977854 ACTCCCACACAATCAGCAGTA 59.022 47.619 0.00 0.00 0.00 2.74
2422 7614 0.767375 ACTCCCACACAATCAGCAGT 59.233 50.000 0.00 0.00 0.00 4.40
2423 7615 1.162698 CACTCCCACACAATCAGCAG 58.837 55.000 0.00 0.00 0.00 4.24
2424 7616 0.764271 TCACTCCCACACAATCAGCA 59.236 50.000 0.00 0.00 0.00 4.41
2425 7617 1.446907 CTCACTCCCACACAATCAGC 58.553 55.000 0.00 0.00 0.00 4.26
2426 7618 1.002888 AGCTCACTCCCACACAATCAG 59.997 52.381 0.00 0.00 0.00 2.90
2427 7619 1.002430 GAGCTCACTCCCACACAATCA 59.998 52.381 9.40 0.00 36.90 2.57
2428 7620 1.002430 TGAGCTCACTCCCACACAATC 59.998 52.381 13.74 0.00 42.74 2.67
2429 7621 1.059098 TGAGCTCACTCCCACACAAT 58.941 50.000 13.74 0.00 42.74 2.71
2430 7622 0.836606 TTGAGCTCACTCCCACACAA 59.163 50.000 18.03 0.00 42.74 3.33
2431 7623 0.106708 GTTGAGCTCACTCCCACACA 59.893 55.000 18.03 0.00 42.74 3.72
2432 7624 0.394565 AGTTGAGCTCACTCCCACAC 59.605 55.000 18.03 10.23 42.74 3.82
2433 7625 1.131638 AAGTTGAGCTCACTCCCACA 58.868 50.000 18.03 0.00 42.74 4.17
2434 7626 1.070758 TCAAGTTGAGCTCACTCCCAC 59.929 52.381 18.03 11.82 42.74 4.61
2435 7627 1.423584 TCAAGTTGAGCTCACTCCCA 58.576 50.000 18.03 0.00 42.74 4.37
2436 7628 2.550830 TTCAAGTTGAGCTCACTCCC 57.449 50.000 18.03 4.82 42.74 4.30
2437 7629 3.935828 GGTATTCAAGTTGAGCTCACTCC 59.064 47.826 18.03 7.53 42.74 3.85
2438 7630 3.935828 GGGTATTCAAGTTGAGCTCACTC 59.064 47.826 18.03 12.78 43.76 3.51
2439 7631 3.617531 CGGGTATTCAAGTTGAGCTCACT 60.618 47.826 18.03 14.07 0.00 3.41
2440 7632 2.673368 CGGGTATTCAAGTTGAGCTCAC 59.327 50.000 18.03 11.89 0.00 3.51
2441 7633 2.565391 TCGGGTATTCAAGTTGAGCTCA 59.435 45.455 13.74 13.74 0.00 4.26
2442 7634 3.190874 CTCGGGTATTCAAGTTGAGCTC 58.809 50.000 6.82 6.82 0.00 4.09
2443 7635 2.567615 ACTCGGGTATTCAAGTTGAGCT 59.432 45.455 5.56 0.72 0.00 4.09
2444 7636 2.930682 GACTCGGGTATTCAAGTTGAGC 59.069 50.000 5.56 1.11 0.00 4.26
2445 7637 4.188247 TGACTCGGGTATTCAAGTTGAG 57.812 45.455 5.56 0.00 0.00 3.02
2446 7638 4.819105 ATGACTCGGGTATTCAAGTTGA 57.181 40.909 0.08 0.08 0.00 3.18
2447 7639 4.935205 TCAATGACTCGGGTATTCAAGTTG 59.065 41.667 0.00 0.00 0.00 3.16
2448 7640 5.160607 TCAATGACTCGGGTATTCAAGTT 57.839 39.130 0.00 0.00 0.00 2.66
2449 7641 4.819105 TCAATGACTCGGGTATTCAAGT 57.181 40.909 0.00 0.00 0.00 3.16
2450 7642 6.683974 AATTCAATGACTCGGGTATTCAAG 57.316 37.500 0.00 0.00 0.00 3.02
2451 7643 9.839817 TTATAATTCAATGACTCGGGTATTCAA 57.160 29.630 0.00 0.00 0.00 2.69
2457 7649 9.490379 GAGTTATTATAATTCAATGACTCGGGT 57.510 33.333 15.72 0.00 38.46 5.28
2458 7650 8.936864 GGAGTTATTATAATTCAATGACTCGGG 58.063 37.037 20.05 0.00 44.13 5.14
2459 7651 8.648097 CGGAGTTATTATAATTCAATGACTCGG 58.352 37.037 20.05 19.55 44.13 4.63
2460 7652 8.648097 CCGGAGTTATTATAATTCAATGACTCG 58.352 37.037 20.05 16.86 44.13 4.18
2461 7653 8.936864 CCCGGAGTTATTATAATTCAATGACTC 58.063 37.037 19.32 19.32 43.24 3.36
2462 7654 8.437575 ACCCGGAGTTATTATAATTCAATGACT 58.562 33.333 0.73 8.85 35.59 3.41
2463 7655 8.617290 ACCCGGAGTTATTATAATTCAATGAC 57.383 34.615 0.73 0.00 0.00 3.06
2467 7659 9.341078 GGTTAACCCGGAGTTATTATAATTCAA 57.659 33.333 14.16 0.00 40.62 2.69
2468 7660 8.907222 GGTTAACCCGGAGTTATTATAATTCA 57.093 34.615 14.16 0.00 40.62 2.57
2486 7678 2.807967 ACTTCGCGTAAAAGGGTTAACC 59.192 45.455 16.85 16.85 40.67 2.85
2487 7679 3.494251 TCACTTCGCGTAAAAGGGTTAAC 59.506 43.478 5.77 0.00 0.00 2.01
2488 7680 3.726607 TCACTTCGCGTAAAAGGGTTAA 58.273 40.909 5.77 0.00 0.00 2.01
2489 7681 3.319755 CTCACTTCGCGTAAAAGGGTTA 58.680 45.455 5.77 0.00 0.00 2.85
2490 7682 2.140717 CTCACTTCGCGTAAAAGGGTT 58.859 47.619 5.77 0.00 0.00 4.11
2491 7683 1.607251 CCTCACTTCGCGTAAAAGGGT 60.607 52.381 5.77 0.00 0.00 4.34
2492 7684 1.076332 CCTCACTTCGCGTAAAAGGG 58.924 55.000 5.77 3.59 0.00 3.95
2493 7685 1.725164 GTCCTCACTTCGCGTAAAAGG 59.275 52.381 5.77 8.42 0.00 3.11
2494 7686 2.400399 TGTCCTCACTTCGCGTAAAAG 58.600 47.619 5.77 5.09 0.00 2.27
2495 7687 2.512485 TGTCCTCACTTCGCGTAAAA 57.488 45.000 5.77 0.00 0.00 1.52
2496 7688 2.512485 TTGTCCTCACTTCGCGTAAA 57.488 45.000 5.77 0.00 0.00 2.01
2497 7689 2.512485 TTTGTCCTCACTTCGCGTAA 57.488 45.000 5.77 0.00 0.00 3.18
2498 7690 2.400399 CTTTTGTCCTCACTTCGCGTA 58.600 47.619 5.77 0.00 0.00 4.42
2499 7691 1.217882 CTTTTGTCCTCACTTCGCGT 58.782 50.000 5.77 0.00 0.00 6.01
2500 7692 0.110644 GCTTTTGTCCTCACTTCGCG 60.111 55.000 0.00 0.00 0.00 5.87
2501 7693 0.110644 CGCTTTTGTCCTCACTTCGC 60.111 55.000 0.00 0.00 0.00 4.70
2502 7694 1.217882 ACGCTTTTGTCCTCACTTCG 58.782 50.000 0.00 0.00 0.00 3.79
2503 7695 3.186613 CCTTACGCTTTTGTCCTCACTTC 59.813 47.826 0.00 0.00 0.00 3.01
2504 7696 3.139077 CCTTACGCTTTTGTCCTCACTT 58.861 45.455 0.00 0.00 0.00 3.16
2505 7697 2.767505 CCTTACGCTTTTGTCCTCACT 58.232 47.619 0.00 0.00 0.00 3.41
2506 7698 1.197036 GCCTTACGCTTTTGTCCTCAC 59.803 52.381 0.00 0.00 0.00 3.51
2507 7699 1.519408 GCCTTACGCTTTTGTCCTCA 58.481 50.000 0.00 0.00 0.00 3.86
2518 7710 0.593128 CATTATGGGCAGCCTTACGC 59.407 55.000 12.43 0.00 37.98 4.42
2519 7711 1.238439 CCATTATGGGCAGCCTTACG 58.762 55.000 12.43 0.00 32.67 3.18
2530 7722 4.473444 AGTACAAGCATTCCCCATTATGG 58.527 43.478 3.85 3.85 37.25 2.74
2531 7723 5.009010 GTGAGTACAAGCATTCCCCATTATG 59.991 44.000 0.00 0.00 0.00 1.90
2532 7724 5.133221 GTGAGTACAAGCATTCCCCATTAT 58.867 41.667 0.00 0.00 0.00 1.28
2533 7725 4.523083 GTGAGTACAAGCATTCCCCATTA 58.477 43.478 0.00 0.00 0.00 1.90
2534 7726 3.356290 GTGAGTACAAGCATTCCCCATT 58.644 45.455 0.00 0.00 0.00 3.16
2535 7727 2.357154 GGTGAGTACAAGCATTCCCCAT 60.357 50.000 0.00 0.00 0.00 4.00
2536 7728 1.004277 GGTGAGTACAAGCATTCCCCA 59.996 52.381 0.00 0.00 0.00 4.96
2537 7729 1.282157 AGGTGAGTACAAGCATTCCCC 59.718 52.381 0.00 0.00 0.00 4.81
2538 7730 2.789409 AGGTGAGTACAAGCATTCCC 57.211 50.000 0.00 0.00 0.00 3.97
2539 7731 3.532542 GGTAGGTGAGTACAAGCATTCC 58.467 50.000 0.00 0.00 0.00 3.01
2540 7732 3.187700 CGGTAGGTGAGTACAAGCATTC 58.812 50.000 0.00 0.00 0.00 2.67
2541 7733 2.565834 ACGGTAGGTGAGTACAAGCATT 59.434 45.455 0.00 0.00 0.00 3.56
2542 7734 2.165845 GACGGTAGGTGAGTACAAGCAT 59.834 50.000 0.00 0.00 0.00 3.79
2543 7735 1.542915 GACGGTAGGTGAGTACAAGCA 59.457 52.381 0.00 0.00 0.00 3.91
2544 7736 1.542915 TGACGGTAGGTGAGTACAAGC 59.457 52.381 0.00 0.00 0.00 4.01
2545 7737 2.818432 ACTGACGGTAGGTGAGTACAAG 59.182 50.000 0.00 0.00 41.58 3.16
2546 7738 2.816087 GACTGACGGTAGGTGAGTACAA 59.184 50.000 0.00 0.00 43.53 2.41
2547 7739 2.430465 GACTGACGGTAGGTGAGTACA 58.570 52.381 0.00 0.00 43.53 2.90
2548 7740 1.396301 CGACTGACGGTAGGTGAGTAC 59.604 57.143 0.00 0.00 43.53 2.73
2551 7743 1.136984 GCGACTGACGGTAGGTGAG 59.863 63.158 1.32 0.00 42.83 3.51
2553 7745 2.181021 GGCGACTGACGGTAGGTG 59.819 66.667 1.32 0.00 42.83 4.00
2587 7779 5.470098 GTGAGTACAAGCATACCCCATTATG 59.530 44.000 0.00 0.00 33.25 1.90
2588 7780 5.456186 GGTGAGTACAAGCATACCCCATTAT 60.456 44.000 0.00 0.00 0.00 1.28
2589 7781 4.141574 GGTGAGTACAAGCATACCCCATTA 60.142 45.833 0.00 0.00 0.00 1.90
2590 7782 3.371595 GGTGAGTACAAGCATACCCCATT 60.372 47.826 0.00 0.00 0.00 3.16
2591 7783 2.172717 GGTGAGTACAAGCATACCCCAT 59.827 50.000 0.00 0.00 0.00 4.00
2592 7784 1.557832 GGTGAGTACAAGCATACCCCA 59.442 52.381 0.00 0.00 0.00 4.96
2593 7785 1.838077 AGGTGAGTACAAGCATACCCC 59.162 52.381 0.00 0.00 0.00 4.95
2594 7786 3.181468 GGTAGGTGAGTACAAGCATACCC 60.181 52.174 11.03 0.00 0.00 3.69
2595 7787 3.449737 TGGTAGGTGAGTACAAGCATACC 59.550 47.826 13.69 13.69 33.56 2.73
2596 7788 4.730949 TGGTAGGTGAGTACAAGCATAC 57.269 45.455 0.00 0.00 0.00 2.39
2597 7789 4.959839 TGATGGTAGGTGAGTACAAGCATA 59.040 41.667 0.00 0.00 34.57 3.14
2598 7790 3.774766 TGATGGTAGGTGAGTACAAGCAT 59.225 43.478 0.00 0.00 36.07 3.79
2599 7791 3.169908 TGATGGTAGGTGAGTACAAGCA 58.830 45.455 0.00 0.00 0.00 3.91
2600 7792 3.786635 CTGATGGTAGGTGAGTACAAGC 58.213 50.000 0.00 0.00 0.00 4.01
2601 7793 3.430929 GGCTGATGGTAGGTGAGTACAAG 60.431 52.174 0.00 0.00 0.00 3.16
2602 7794 2.500098 GGCTGATGGTAGGTGAGTACAA 59.500 50.000 0.00 0.00 0.00 2.41
2603 7795 2.108168 GGCTGATGGTAGGTGAGTACA 58.892 52.381 0.00 0.00 0.00 2.90
2604 7796 1.067212 CGGCTGATGGTAGGTGAGTAC 59.933 57.143 0.00 0.00 0.00 2.73
2605 7797 1.341679 ACGGCTGATGGTAGGTGAGTA 60.342 52.381 0.00 0.00 0.00 2.59
2606 7798 0.614979 ACGGCTGATGGTAGGTGAGT 60.615 55.000 0.00 0.00 0.00 3.41
2607 7799 0.103208 GACGGCTGATGGTAGGTGAG 59.897 60.000 0.00 0.00 0.00 3.51
2608 7800 0.613572 TGACGGCTGATGGTAGGTGA 60.614 55.000 0.00 0.00 0.00 4.02
2609 7801 0.179100 CTGACGGCTGATGGTAGGTG 60.179 60.000 0.00 0.00 0.00 4.00
2610 7802 0.324368 TCTGACGGCTGATGGTAGGT 60.324 55.000 0.00 0.00 0.00 3.08
2611 7803 0.103208 GTCTGACGGCTGATGGTAGG 59.897 60.000 0.00 0.00 0.00 3.18
2612 7804 0.817654 TGTCTGACGGCTGATGGTAG 59.182 55.000 0.00 0.00 0.00 3.18
2613 7805 0.530744 GTGTCTGACGGCTGATGGTA 59.469 55.000 0.00 0.00 0.00 3.25
2614 7806 1.293498 GTGTCTGACGGCTGATGGT 59.707 57.895 0.00 0.00 0.00 3.55
2615 7807 1.448540 GGTGTCTGACGGCTGATGG 60.449 63.158 0.00 0.00 0.00 3.51
2616 7808 1.016130 GTGGTGTCTGACGGCTGATG 61.016 60.000 0.00 0.00 0.00 3.07
2617 7809 1.293498 GTGGTGTCTGACGGCTGAT 59.707 57.895 0.00 0.00 0.00 2.90
2618 7810 2.734591 GTGGTGTCTGACGGCTGA 59.265 61.111 0.00 0.00 0.00 4.26
2619 7811 2.734723 CGTGGTGTCTGACGGCTG 60.735 66.667 2.98 0.00 31.84 4.85
2623 7815 3.991051 AGCCCGTGGTGTCTGACG 61.991 66.667 2.98 0.00 35.31 4.35
2624 7816 2.357517 CAGCCCGTGGTGTCTGAC 60.358 66.667 0.00 0.00 35.25 3.51
2625 7817 4.314440 GCAGCCCGTGGTGTCTGA 62.314 66.667 0.00 0.00 42.04 3.27
2643 7835 1.416243 ACAAGCATGCCCCATTATGG 58.584 50.000 15.66 3.85 37.25 2.74
2644 7836 3.225104 AGTACAAGCATGCCCCATTATG 58.775 45.455 15.66 5.07 0.00 1.90
2645 7837 3.117550 TGAGTACAAGCATGCCCCATTAT 60.118 43.478 15.66 0.00 0.00 1.28
2646 7838 2.240921 TGAGTACAAGCATGCCCCATTA 59.759 45.455 15.66 0.00 0.00 1.90
2647 7839 1.005805 TGAGTACAAGCATGCCCCATT 59.994 47.619 15.66 0.00 0.00 3.16
2648 7840 0.625316 TGAGTACAAGCATGCCCCAT 59.375 50.000 15.66 0.00 0.00 4.00
2649 7841 0.322456 GTGAGTACAAGCATGCCCCA 60.322 55.000 15.66 0.00 0.00 4.96
2650 7842 1.032114 GGTGAGTACAAGCATGCCCC 61.032 60.000 15.66 0.00 0.00 5.80
2651 7843 0.035056 AGGTGAGTACAAGCATGCCC 60.035 55.000 15.66 4.79 0.00 5.36
2652 7844 2.280628 GTAGGTGAGTACAAGCATGCC 58.719 52.381 15.66 0.00 0.00 4.40
2653 7845 2.280628 GGTAGGTGAGTACAAGCATGC 58.719 52.381 10.51 10.51 0.00 4.06
2654 7846 2.094182 ACGGTAGGTGAGTACAAGCATG 60.094 50.000 0.00 0.00 0.00 4.06
2655 7847 2.165845 GACGGTAGGTGAGTACAAGCAT 59.834 50.000 0.00 0.00 0.00 3.79
2656 7848 1.542915 GACGGTAGGTGAGTACAAGCA 59.457 52.381 0.00 0.00 0.00 3.91
2657 7849 1.542915 TGACGGTAGGTGAGTACAAGC 59.457 52.381 0.00 0.00 0.00 4.01
2658 7850 2.818432 ACTGACGGTAGGTGAGTACAAG 59.182 50.000 0.00 0.00 41.58 3.16
2659 7851 2.816087 GACTGACGGTAGGTGAGTACAA 59.184 50.000 0.00 0.00 43.53 2.41
2660 7852 2.430465 GACTGACGGTAGGTGAGTACA 58.570 52.381 0.00 0.00 43.53 2.90
2661 7853 1.396301 CGACTGACGGTAGGTGAGTAC 59.604 57.143 0.00 0.00 43.53 2.73
2662 7854 1.002430 ACGACTGACGGTAGGTGAGTA 59.998 52.381 4.39 0.00 43.53 2.59
2663 7855 0.250640 ACGACTGACGGTAGGTGAGT 60.251 55.000 4.39 0.00 46.32 3.41
2673 7865 1.136029 GTAGGTGTCTGACGACTGACG 60.136 57.143 16.96 0.00 44.27 4.35
2674 7866 1.878088 TGTAGGTGTCTGACGACTGAC 59.122 52.381 15.72 15.72 42.57 3.51
2675 7867 1.878088 GTGTAGGTGTCTGACGACTGA 59.122 52.381 12.52 0.00 40.86 3.41
2676 7868 1.880675 AGTGTAGGTGTCTGACGACTG 59.119 52.381 12.52 0.00 40.86 3.51
2677 7869 1.880675 CAGTGTAGGTGTCTGACGACT 59.119 52.381 2.98 6.33 40.86 4.18
2678 7870 1.666311 GCAGTGTAGGTGTCTGACGAC 60.666 57.143 2.98 2.95 40.64 4.34
2679 7871 0.596577 GCAGTGTAGGTGTCTGACGA 59.403 55.000 2.98 0.00 0.00 4.20
2680 7872 0.729478 CGCAGTGTAGGTGTCTGACG 60.729 60.000 2.98 0.00 0.00 4.35
2681 7873 1.009389 GCGCAGTGTAGGTGTCTGAC 61.009 60.000 0.30 0.00 0.00 3.51
2682 7874 1.179174 AGCGCAGTGTAGGTGTCTGA 61.179 55.000 11.47 0.00 0.00 3.27
2683 7875 0.526211 TAGCGCAGTGTAGGTGTCTG 59.474 55.000 11.47 0.00 0.00 3.51
2684 7876 1.254026 TTAGCGCAGTGTAGGTGTCT 58.746 50.000 11.47 0.00 0.00 3.41
2685 7877 1.927174 CATTAGCGCAGTGTAGGTGTC 59.073 52.381 11.47 0.00 0.00 3.67
2686 7878 1.275291 ACATTAGCGCAGTGTAGGTGT 59.725 47.619 11.47 0.00 0.00 4.16
2687 7879 1.660607 CACATTAGCGCAGTGTAGGTG 59.339 52.381 11.47 4.63 0.00 4.00
2688 7880 1.405526 CCACATTAGCGCAGTGTAGGT 60.406 52.381 11.47 0.00 0.00 3.08
2689 7881 1.134818 TCCACATTAGCGCAGTGTAGG 60.135 52.381 11.47 14.18 0.00 3.18
2690 7882 2.293677 TCCACATTAGCGCAGTGTAG 57.706 50.000 11.47 4.51 0.00 2.74
2691 7883 2.979814 ATCCACATTAGCGCAGTGTA 57.020 45.000 11.47 0.00 0.00 2.90
2692 7884 2.979814 TATCCACATTAGCGCAGTGT 57.020 45.000 11.47 8.47 0.00 3.55
2693 7885 3.198068 ACTTATCCACATTAGCGCAGTG 58.802 45.455 11.47 12.57 0.00 3.66
2694 7886 3.543680 ACTTATCCACATTAGCGCAGT 57.456 42.857 11.47 0.00 0.00 4.40
2695 7887 3.546815 GCAACTTATCCACATTAGCGCAG 60.547 47.826 11.47 0.00 0.00 5.18
2696 7888 2.354510 GCAACTTATCCACATTAGCGCA 59.645 45.455 11.47 0.00 0.00 6.09
2697 7889 2.287009 GGCAACTTATCCACATTAGCGC 60.287 50.000 0.00 0.00 0.00 5.92
2698 7890 3.609103 GGCAACTTATCCACATTAGCG 57.391 47.619 0.00 0.00 0.00 4.26
2708 7900 3.931630 CGATGACGGCAGGCAACTTATC 61.932 54.545 0.00 0.00 39.91 1.75
2709 7901 2.074288 CGATGACGGCAGGCAACTTAT 61.074 52.381 0.00 0.00 39.91 1.73
2710 7902 0.739462 CGATGACGGCAGGCAACTTA 60.739 55.000 0.00 0.00 39.91 2.24
2711 7903 2.034879 CGATGACGGCAGGCAACTT 61.035 57.895 0.00 0.00 39.91 2.66
2712 7904 2.434884 CGATGACGGCAGGCAACT 60.435 61.111 0.00 0.00 39.91 3.16
2713 7905 2.434185 TCGATGACGGCAGGCAAC 60.434 61.111 0.00 0.00 39.91 4.17
2714 7906 2.434185 GTCGATGACGGCAGGCAA 60.434 61.111 0.00 0.00 44.03 4.52
2715 7907 4.451150 GGTCGATGACGGCAGGCA 62.451 66.667 0.00 0.00 46.58 4.75
2748 7940 7.287927 AGTTCGAATTATTCCTAGGATCTGACA 59.712 37.037 13.57 0.00 0.00 3.58
2756 7948 6.667558 ACCCTAGTTCGAATTATTCCTAGG 57.332 41.667 21.79 21.79 38.19 3.02
2760 7952 8.202811 AGACTTAACCCTAGTTCGAATTATTCC 58.797 37.037 0.00 0.00 37.42 3.01
2761 7953 9.032420 CAGACTTAACCCTAGTTCGAATTATTC 57.968 37.037 0.00 0.00 37.42 1.75
2762 7954 8.755977 TCAGACTTAACCCTAGTTCGAATTATT 58.244 33.333 0.00 0.00 37.42 1.40
2763 7955 8.196103 GTCAGACTTAACCCTAGTTCGAATTAT 58.804 37.037 0.00 0.00 37.42 1.28
2765 7957 6.210984 AGTCAGACTTAACCCTAGTTCGAATT 59.789 38.462 0.00 0.00 37.42 2.17
2766 7958 5.715753 AGTCAGACTTAACCCTAGTTCGAAT 59.284 40.000 0.00 0.00 37.42 3.34
2769 7961 4.458295 TGAGTCAGACTTAACCCTAGTTCG 59.542 45.833 4.05 0.00 37.42 3.95
2770 7962 5.979288 TGAGTCAGACTTAACCCTAGTTC 57.021 43.478 4.05 0.00 37.42 3.01
2773 7966 7.063544 CGAAAATTGAGTCAGACTTAACCCTAG 59.936 40.741 9.86 0.00 0.00 3.02
2782 7975 5.499139 TTTTGCGAAAATTGAGTCAGACT 57.501 34.783 1.46 1.46 0.00 3.24
2783 7976 4.676924 CCTTTTGCGAAAATTGAGTCAGAC 59.323 41.667 0.00 0.00 0.00 3.51
2788 7981 3.383185 TGACCCTTTTGCGAAAATTGAGT 59.617 39.130 0.00 0.00 0.00 3.41
2791 7984 5.163814 TGTTTTGACCCTTTTGCGAAAATTG 60.164 36.000 0.00 0.00 0.00 2.32
2799 7992 1.135333 TCGGTGTTTTGACCCTTTTGC 59.865 47.619 0.00 0.00 31.57 3.68
2801 7994 4.746535 AATTCGGTGTTTTGACCCTTTT 57.253 36.364 0.00 0.00 31.57 2.27
2802 7995 4.438148 CAAATTCGGTGTTTTGACCCTTT 58.562 39.130 0.00 0.00 35.34 3.11
2818 8011 1.376609 ATCTGCGACGGGGCAAATTC 61.377 55.000 4.22 0.00 43.39 2.17
2876 8069 1.737236 GTGAACCGTAATCATGCAGCA 59.263 47.619 0.00 0.00 0.00 4.41
2877 8070 1.737236 TGTGAACCGTAATCATGCAGC 59.263 47.619 0.00 0.00 0.00 5.25
2878 8071 3.002791 ACTGTGAACCGTAATCATGCAG 58.997 45.455 0.00 0.00 31.04 4.41
2879 8072 3.052455 ACTGTGAACCGTAATCATGCA 57.948 42.857 0.00 0.00 0.00 3.96
2889 8082 0.737715 GGCTCTGCTACTGTGAACCG 60.738 60.000 0.00 0.00 0.00 4.44
2919 8126 2.778299 TGGTGTGTGTAGCCTTTGATC 58.222 47.619 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.