Multiple sequence alignment - TraesCS2B01G588700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G588700 chr2B 100.000 3725 0 0 1 3725 775339743 775336019 0.000000e+00 6879.0
1 TraesCS2B01G588700 chr2D 93.217 2919 151 23 812 3725 631950150 631947274 0.000000e+00 4250.0
2 TraesCS2B01G588700 chr2D 80.208 384 40 13 131 483 631950512 631950134 4.770000e-64 255.0
3 TraesCS2B01G588700 chr2D 82.845 239 30 5 575 812 596210730 596210958 1.750000e-48 204.0
4 TraesCS2B01G588700 chr2A 94.257 1898 82 8 926 2819 759820439 759822313 0.000000e+00 2876.0
5 TraesCS2B01G588700 chr2A 91.799 695 43 10 2769 3462 759822315 759822996 0.000000e+00 955.0
6 TraesCS2B01G588700 chr2A 86.885 61 5 2 746 806 622736089 622736146 8.640000e-07 65.8
7 TraesCS2B01G588700 chr7B 84.524 252 30 6 572 820 21662778 21662533 1.340000e-59 241.0
8 TraesCS2B01G588700 chr4D 85.185 189 24 3 568 754 405747419 405747233 1.370000e-44 191.0
9 TraesCS2B01G588700 chr4B 83.654 208 27 6 568 771 480692171 480691967 4.910000e-44 189.0
10 TraesCS2B01G588700 chr7D 85.165 182 25 2 568 748 607124403 607124223 6.350000e-43 185.0
11 TraesCS2B01G588700 chr7D 84.492 187 26 3 568 752 24331210 24331025 8.220000e-42 182.0
12 TraesCS2B01G588700 chr7D 81.991 211 32 6 565 771 632076768 632076976 1.380000e-39 174.0
13 TraesCS2B01G588700 chr7D 82.439 205 29 7 565 766 84247384 84247584 4.950000e-39 172.0
14 TraesCS2B01G588700 chr1D 79.909 219 42 1 501 719 73669062 73669278 3.850000e-35 159.0
15 TraesCS2B01G588700 chr1B 88.136 118 6 7 1 116 646817461 646817572 2.330000e-27 134.0
16 TraesCS2B01G588700 chr6B 90.164 61 6 0 193 253 18215688 18215628 3.080000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G588700 chr2B 775336019 775339743 3724 True 6879.0 6879 100.0000 1 3725 1 chr2B.!!$R1 3724
1 TraesCS2B01G588700 chr2D 631947274 631950512 3238 True 2252.5 4250 86.7125 131 3725 2 chr2D.!!$R1 3594
2 TraesCS2B01G588700 chr2A 759820439 759822996 2557 False 1915.5 2876 93.0280 926 3462 2 chr2A.!!$F2 2536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
773 803 0.030638 GGGTGTGTGTGCATGTGTTC 59.969 55.0 0.0 0.0 0.0 3.18 F
786 816 0.249120 TGTGTTCATAGGGGTGAGCG 59.751 55.0 0.0 0.0 32.7 5.03 F
787 817 0.249398 GTGTTCATAGGGGTGAGCGT 59.751 55.0 0.0 0.0 32.7 5.07 F
2181 2211 0.532640 CGATGATCATGGGGTTCGCA 60.533 55.0 14.3 0.0 0.0 5.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1911 1941 0.107508 CAAGCATCATGGGACCGAGT 60.108 55.000 0.00 0.0 0.0 4.18 R
2334 2364 0.169009 GCTCAATGCGGAACTTGTCC 59.831 55.000 0.00 0.0 43.9 4.02 R
2403 2433 1.073444 TCCTCGGCGTCCTCTATATGT 59.927 52.381 6.85 0.0 0.0 2.29 R
3446 3532 0.313672 CCAGCTCTGATAGTCGGCTC 59.686 60.000 0.00 0.0 0.0 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.134623 GGTCACAGCCACACGAAA 57.865 55.556 0.00 0.00 0.00 3.46
19 20 0.307760 GGTCACAGCCACACGAAAAG 59.692 55.000 0.00 0.00 0.00 2.27
20 21 0.317020 GTCACAGCCACACGAAAAGC 60.317 55.000 0.00 0.00 0.00 3.51
21 22 0.746204 TCACAGCCACACGAAAAGCA 60.746 50.000 0.00 0.00 0.00 3.91
22 23 0.317269 CACAGCCACACGAAAAGCAG 60.317 55.000 0.00 0.00 0.00 4.24
23 24 1.283793 CAGCCACACGAAAAGCAGG 59.716 57.895 0.00 0.00 0.00 4.85
24 25 1.152963 AGCCACACGAAAAGCAGGT 60.153 52.632 0.00 0.00 0.00 4.00
25 26 0.107831 AGCCACACGAAAAGCAGGTA 59.892 50.000 0.00 0.00 0.00 3.08
26 27 0.237498 GCCACACGAAAAGCAGGTAC 59.763 55.000 0.00 0.00 0.00 3.34
27 28 1.878953 CCACACGAAAAGCAGGTACT 58.121 50.000 0.00 0.00 43.88 2.73
40 41 2.370281 AGGTACTGCTCGTGAACATG 57.630 50.000 0.00 0.00 37.18 3.21
41 42 1.893137 AGGTACTGCTCGTGAACATGA 59.107 47.619 0.00 0.00 37.18 3.07
42 43 2.299013 AGGTACTGCTCGTGAACATGAA 59.701 45.455 0.00 0.00 37.18 2.57
43 44 3.055819 AGGTACTGCTCGTGAACATGAAT 60.056 43.478 0.00 0.00 37.18 2.57
44 45 3.062639 GGTACTGCTCGTGAACATGAATG 59.937 47.826 0.00 0.00 0.00 2.67
45 46 3.044235 ACTGCTCGTGAACATGAATGA 57.956 42.857 0.00 0.00 0.00 2.57
46 47 3.402110 ACTGCTCGTGAACATGAATGAA 58.598 40.909 0.00 0.00 0.00 2.57
47 48 4.005650 ACTGCTCGTGAACATGAATGAAT 58.994 39.130 0.00 0.00 0.00 2.57
48 49 4.456911 ACTGCTCGTGAACATGAATGAATT 59.543 37.500 0.00 0.00 0.00 2.17
49 50 5.643348 ACTGCTCGTGAACATGAATGAATTA 59.357 36.000 0.00 0.00 0.00 1.40
50 51 6.110543 TGCTCGTGAACATGAATGAATTAG 57.889 37.500 0.00 0.00 0.00 1.73
51 52 5.065090 TGCTCGTGAACATGAATGAATTAGG 59.935 40.000 0.00 0.00 0.00 2.69
52 53 5.294306 GCTCGTGAACATGAATGAATTAGGA 59.706 40.000 0.00 0.00 0.00 2.94
53 54 6.183360 GCTCGTGAACATGAATGAATTAGGAA 60.183 38.462 0.00 0.00 0.00 3.36
54 55 7.626240 GCTCGTGAACATGAATGAATTAGGAAA 60.626 37.037 0.00 0.00 0.00 3.13
55 56 8.105097 TCGTGAACATGAATGAATTAGGAAAA 57.895 30.769 0.00 0.00 0.00 2.29
56 57 8.020819 TCGTGAACATGAATGAATTAGGAAAAC 58.979 33.333 0.00 0.00 0.00 2.43
57 58 7.807433 CGTGAACATGAATGAATTAGGAAAACA 59.193 33.333 0.00 0.00 0.00 2.83
58 59 9.132521 GTGAACATGAATGAATTAGGAAAACAG 57.867 33.333 0.00 0.00 0.00 3.16
59 60 9.076781 TGAACATGAATGAATTAGGAAAACAGA 57.923 29.630 0.00 0.00 0.00 3.41
68 69 9.844257 ATGAATTAGGAAAACAGATAGAGAAGG 57.156 33.333 0.00 0.00 0.00 3.46
69 70 8.826765 TGAATTAGGAAAACAGATAGAGAAGGT 58.173 33.333 0.00 0.00 0.00 3.50
70 71 9.103861 GAATTAGGAAAACAGATAGAGAAGGTG 57.896 37.037 0.00 0.00 0.00 4.00
71 72 7.792364 TTAGGAAAACAGATAGAGAAGGTGA 57.208 36.000 0.00 0.00 0.00 4.02
72 73 6.882768 AGGAAAACAGATAGAGAAGGTGAT 57.117 37.500 0.00 0.00 0.00 3.06
73 74 7.264294 AGGAAAACAGATAGAGAAGGTGATT 57.736 36.000 0.00 0.00 0.00 2.57
74 75 7.334858 AGGAAAACAGATAGAGAAGGTGATTC 58.665 38.462 0.00 0.00 38.28 2.52
89 90 9.525826 AGAAGGTGATTCTTTTTGTTATGATCT 57.474 29.630 0.00 0.00 46.49 2.75
90 91 9.780413 GAAGGTGATTCTTTTTGTTATGATCTC 57.220 33.333 0.00 0.00 34.86 2.75
91 92 8.286191 AGGTGATTCTTTTTGTTATGATCTCC 57.714 34.615 0.00 0.00 0.00 3.71
92 93 7.340487 AGGTGATTCTTTTTGTTATGATCTCCC 59.660 37.037 0.00 0.00 0.00 4.30
93 94 7.340487 GGTGATTCTTTTTGTTATGATCTCCCT 59.660 37.037 0.00 0.00 0.00 4.20
94 95 8.743714 GTGATTCTTTTTGTTATGATCTCCCTT 58.256 33.333 0.00 0.00 0.00 3.95
95 96 9.312904 TGATTCTTTTTGTTATGATCTCCCTTT 57.687 29.630 0.00 0.00 0.00 3.11
96 97 9.578439 GATTCTTTTTGTTATGATCTCCCTTTG 57.422 33.333 0.00 0.00 0.00 2.77
97 98 8.477419 TTCTTTTTGTTATGATCTCCCTTTGT 57.523 30.769 0.00 0.00 0.00 2.83
98 99 7.885297 TCTTTTTGTTATGATCTCCCTTTGTG 58.115 34.615 0.00 0.00 0.00 3.33
99 100 7.505585 TCTTTTTGTTATGATCTCCCTTTGTGT 59.494 33.333 0.00 0.00 0.00 3.72
100 101 8.698973 TTTTTGTTATGATCTCCCTTTGTGTA 57.301 30.769 0.00 0.00 0.00 2.90
101 102 8.877864 TTTTGTTATGATCTCCCTTTGTGTAT 57.122 30.769 0.00 0.00 0.00 2.29
102 103 9.967451 TTTTGTTATGATCTCCCTTTGTGTATA 57.033 29.630 0.00 0.00 0.00 1.47
103 104 8.958119 TTGTTATGATCTCCCTTTGTGTATAC 57.042 34.615 0.00 0.00 0.00 1.47
104 105 8.084985 TGTTATGATCTCCCTTTGTGTATACA 57.915 34.615 0.08 0.08 34.31 2.29
105 106 8.713971 TGTTATGATCTCCCTTTGTGTATACAT 58.286 33.333 9.18 0.00 36.53 2.29
147 148 9.686683 ATATGCATATTACTAATCCCCTTGTTC 57.313 33.333 13.63 0.00 0.00 3.18
156 157 6.485171 ACTAATCCCCTTGTTCCATATATGC 58.515 40.000 7.24 0.00 0.00 3.14
161 162 7.763564 TCCCCTTGTTCCATATATGCATATA 57.236 36.000 24.92 24.92 0.00 0.86
210 211 9.436957 GTAGAGATTGACCAAGTTTATTGAGAA 57.563 33.333 0.00 0.00 0.00 2.87
218 219 9.137459 TGACCAAGTTTATTGAGAAAAATACCA 57.863 29.630 0.00 0.00 0.00 3.25
219 220 9.974980 GACCAAGTTTATTGAGAAAAATACCAA 57.025 29.630 0.00 0.00 0.00 3.67
220 221 9.758651 ACCAAGTTTATTGAGAAAAATACCAAC 57.241 29.630 0.00 0.00 0.00 3.77
221 222 9.757227 CCAAGTTTATTGAGAAAAATACCAACA 57.243 29.630 0.00 0.00 0.00 3.33
276 293 4.454728 AACCCATGTTGTATGCAATGAC 57.545 40.909 0.00 0.00 36.92 3.06
280 297 5.046448 ACCCATGTTGTATGCAATGACATTT 60.046 36.000 0.00 0.00 36.92 2.32
349 378 9.750125 AAAGTTGACAAAGCTTTAATTTAGAGG 57.250 29.630 12.25 0.00 31.54 3.69
350 379 7.886338 AGTTGACAAAGCTTTAATTTAGAGGG 58.114 34.615 12.25 0.00 0.00 4.30
353 382 8.472007 TGACAAAGCTTTAATTTAGAGGGAAA 57.528 30.769 12.25 0.00 0.00 3.13
354 383 8.919145 TGACAAAGCTTTAATTTAGAGGGAAAA 58.081 29.630 12.25 0.00 0.00 2.29
355 384 9.758651 GACAAAGCTTTAATTTAGAGGGAAAAA 57.241 29.630 12.25 0.00 0.00 1.94
396 425 4.478317 TGGAATGGAGAGGGTATGAAACAT 59.522 41.667 0.00 0.00 0.00 2.71
397 426 5.044179 TGGAATGGAGAGGGTATGAAACATT 60.044 40.000 0.00 0.00 0.00 2.71
442 472 8.682710 ACTAAATTTTACACGGTCAATGCATAT 58.317 29.630 0.00 0.00 0.00 1.78
447 477 7.618502 TTTACACGGTCAATGCATATACTTT 57.381 32.000 0.00 0.00 0.00 2.66
473 503 9.979578 TTGCATAAATTAGTGATCACTGTTTTT 57.020 25.926 33.76 27.78 42.52 1.94
483 513 7.141363 AGTGATCACTGTTTTTACAGAATTGC 58.859 34.615 27.37 0.00 40.75 3.56
484 514 6.086765 GTGATCACTGTTTTTACAGAATTGCG 59.913 38.462 18.83 0.00 39.99 4.85
485 515 5.743026 TCACTGTTTTTACAGAATTGCGA 57.257 34.783 11.90 0.00 39.99 5.10
486 516 6.125327 TCACTGTTTTTACAGAATTGCGAA 57.875 33.333 11.90 0.00 39.99 4.70
487 517 6.734137 TCACTGTTTTTACAGAATTGCGAAT 58.266 32.000 11.90 0.00 39.99 3.34
488 518 6.855914 TCACTGTTTTTACAGAATTGCGAATC 59.144 34.615 11.90 0.00 39.99 2.52
489 519 6.636447 CACTGTTTTTACAGAATTGCGAATCA 59.364 34.615 11.90 0.00 39.99 2.57
490 520 7.167302 CACTGTTTTTACAGAATTGCGAATCAA 59.833 33.333 11.90 0.00 39.99 2.57
491 521 7.167468 ACTGTTTTTACAGAATTGCGAATCAAC 59.833 33.333 11.90 0.00 39.99 3.18
492 522 6.419413 TGTTTTTACAGAATTGCGAATCAACC 59.581 34.615 0.00 0.00 37.53 3.77
493 523 5.697473 TTTACAGAATTGCGAATCAACCA 57.303 34.783 0.00 0.00 37.53 3.67
494 524 3.837213 ACAGAATTGCGAATCAACCAG 57.163 42.857 0.00 0.00 37.53 4.00
495 525 3.149196 ACAGAATTGCGAATCAACCAGT 58.851 40.909 0.00 0.00 37.53 4.00
496 526 3.058016 ACAGAATTGCGAATCAACCAGTG 60.058 43.478 0.00 0.00 37.53 3.66
497 527 3.189080 CAGAATTGCGAATCAACCAGTGA 59.811 43.478 0.00 0.00 41.67 3.41
512 542 9.722184 ATCAACCAGTGATTAGATGATTATGAG 57.278 33.333 0.00 0.00 45.13 2.90
513 543 8.152898 TCAACCAGTGATTAGATGATTATGAGG 58.847 37.037 0.00 0.00 0.00 3.86
514 544 7.862274 ACCAGTGATTAGATGATTATGAGGA 57.138 36.000 0.00 0.00 0.00 3.71
515 545 7.675062 ACCAGTGATTAGATGATTATGAGGAC 58.325 38.462 0.00 0.00 0.00 3.85
516 546 7.290948 ACCAGTGATTAGATGATTATGAGGACA 59.709 37.037 0.00 0.00 0.00 4.02
517 547 7.818446 CCAGTGATTAGATGATTATGAGGACAG 59.182 40.741 0.00 0.00 0.00 3.51
518 548 8.366401 CAGTGATTAGATGATTATGAGGACAGT 58.634 37.037 0.00 0.00 0.00 3.55
519 549 8.366401 AGTGATTAGATGATTATGAGGACAGTG 58.634 37.037 0.00 0.00 0.00 3.66
520 550 7.601886 GTGATTAGATGATTATGAGGACAGTGG 59.398 40.741 0.00 0.00 0.00 4.00
521 551 7.290948 TGATTAGATGATTATGAGGACAGTGGT 59.709 37.037 0.00 0.00 0.00 4.16
522 552 8.727100 ATTAGATGATTATGAGGACAGTGGTA 57.273 34.615 0.00 0.00 0.00 3.25
523 553 8.727100 TTAGATGATTATGAGGACAGTGGTAT 57.273 34.615 0.00 0.00 0.00 2.73
524 554 7.623999 AGATGATTATGAGGACAGTGGTATT 57.376 36.000 0.00 0.00 0.00 1.89
525 555 7.675062 AGATGATTATGAGGACAGTGGTATTC 58.325 38.462 0.00 0.00 0.00 1.75
526 556 6.174720 TGATTATGAGGACAGTGGTATTCC 57.825 41.667 0.00 0.00 0.00 3.01
527 557 5.071788 TGATTATGAGGACAGTGGTATTCCC 59.928 44.000 0.00 0.00 0.00 3.97
528 558 2.335681 TGAGGACAGTGGTATTCCCA 57.664 50.000 0.00 0.00 42.51 4.37
529 559 2.187958 TGAGGACAGTGGTATTCCCAG 58.812 52.381 0.00 0.00 46.45 4.45
531 561 2.168728 GAGGACAGTGGTATTCCCAGTC 59.831 54.545 0.00 0.00 43.93 3.51
532 562 1.209747 GGACAGTGGTATTCCCAGTCC 59.790 57.143 7.79 7.79 43.93 3.85
533 563 1.906574 GACAGTGGTATTCCCAGTCCA 59.093 52.381 0.00 0.00 43.93 4.02
534 564 1.628846 ACAGTGGTATTCCCAGTCCAC 59.371 52.381 5.21 5.21 43.93 4.02
535 565 1.628340 CAGTGGTATTCCCAGTCCACA 59.372 52.381 14.19 0.00 43.93 4.17
536 566 2.039746 CAGTGGTATTCCCAGTCCACAA 59.960 50.000 14.19 0.00 43.93 3.33
537 567 2.305927 AGTGGTATTCCCAGTCCACAAG 59.694 50.000 14.19 0.00 43.93 3.16
538 568 2.304761 GTGGTATTCCCAGTCCACAAGA 59.695 50.000 8.09 0.00 46.45 3.02
539 569 2.571653 TGGTATTCCCAGTCCACAAGAG 59.428 50.000 0.00 0.00 38.72 2.85
540 570 2.572104 GGTATTCCCAGTCCACAAGAGT 59.428 50.000 0.00 0.00 0.00 3.24
541 571 3.009143 GGTATTCCCAGTCCACAAGAGTT 59.991 47.826 0.00 0.00 0.00 3.01
542 572 2.930826 TTCCCAGTCCACAAGAGTTC 57.069 50.000 0.00 0.00 0.00 3.01
543 573 1.801242 TCCCAGTCCACAAGAGTTCA 58.199 50.000 0.00 0.00 0.00 3.18
544 574 2.123589 TCCCAGTCCACAAGAGTTCAA 58.876 47.619 0.00 0.00 0.00 2.69
545 575 2.158813 TCCCAGTCCACAAGAGTTCAAC 60.159 50.000 0.00 0.00 0.00 3.18
546 576 2.158755 CCCAGTCCACAAGAGTTCAACT 60.159 50.000 0.00 0.00 0.00 3.16
547 577 3.545703 CCAGTCCACAAGAGTTCAACTT 58.454 45.455 0.00 0.00 0.00 2.66
548 578 4.444306 CCCAGTCCACAAGAGTTCAACTTA 60.444 45.833 0.00 0.00 0.00 2.24
549 579 5.308825 CCAGTCCACAAGAGTTCAACTTAT 58.691 41.667 0.00 0.00 0.00 1.73
550 580 6.464222 CCAGTCCACAAGAGTTCAACTTATA 58.536 40.000 0.00 0.00 0.00 0.98
551 581 6.591834 CCAGTCCACAAGAGTTCAACTTATAG 59.408 42.308 0.00 0.00 0.00 1.31
552 582 7.378966 CAGTCCACAAGAGTTCAACTTATAGA 58.621 38.462 0.00 0.00 0.00 1.98
553 583 7.543868 CAGTCCACAAGAGTTCAACTTATAGAG 59.456 40.741 0.00 0.00 0.00 2.43
554 584 7.233757 AGTCCACAAGAGTTCAACTTATAGAGT 59.766 37.037 0.00 0.00 41.47 3.24
566 596 6.743575 AACTTATAGAGTTGACATTGGTGC 57.256 37.500 0.00 0.00 46.66 5.01
567 597 5.186198 ACTTATAGAGTTGACATTGGTGCC 58.814 41.667 0.00 0.00 33.92 5.01
568 598 3.719268 ATAGAGTTGACATTGGTGCCA 57.281 42.857 0.00 0.00 0.00 4.92
569 599 2.592102 AGAGTTGACATTGGTGCCAT 57.408 45.000 0.00 0.00 0.00 4.40
570 600 2.880443 AGAGTTGACATTGGTGCCATT 58.120 42.857 0.00 0.00 0.00 3.16
571 601 2.559668 AGAGTTGACATTGGTGCCATTG 59.440 45.455 10.51 10.51 34.58 2.82
572 602 1.619827 AGTTGACATTGGTGCCATTGG 59.380 47.619 15.00 0.00 33.22 3.16
573 603 1.344114 GTTGACATTGGTGCCATTGGT 59.656 47.619 15.00 4.41 33.22 3.67
574 604 0.967662 TGACATTGGTGCCATTGGTG 59.032 50.000 15.00 0.00 33.22 4.17
575 605 0.390209 GACATTGGTGCCATTGGTGC 60.390 55.000 15.00 0.00 33.22 5.01
576 606 0.832983 ACATTGGTGCCATTGGTGCT 60.833 50.000 15.00 0.00 33.22 4.40
577 607 0.108520 CATTGGTGCCATTGGTGCTC 60.109 55.000 4.26 0.00 0.00 4.26
578 608 1.597797 ATTGGTGCCATTGGTGCTCG 61.598 55.000 4.26 0.00 0.00 5.03
579 609 4.120331 GGTGCCATTGGTGCTCGC 62.120 66.667 4.26 0.00 0.00 5.03
580 610 3.364441 GTGCCATTGGTGCTCGCA 61.364 61.111 4.26 0.00 0.00 5.10
581 611 2.361483 TGCCATTGGTGCTCGCAT 60.361 55.556 4.26 0.00 0.00 4.73
582 612 1.978080 TGCCATTGGTGCTCGCATT 60.978 52.632 4.26 0.00 0.00 3.56
583 613 1.216178 GCCATTGGTGCTCGCATTT 59.784 52.632 4.26 0.00 0.00 2.32
584 614 0.390209 GCCATTGGTGCTCGCATTTT 60.390 50.000 4.26 0.00 0.00 1.82
585 615 1.632422 CCATTGGTGCTCGCATTTTC 58.368 50.000 0.00 0.00 0.00 2.29
586 616 1.632422 CATTGGTGCTCGCATTTTCC 58.368 50.000 0.00 0.00 0.00 3.13
587 617 1.203052 CATTGGTGCTCGCATTTTCCT 59.797 47.619 0.00 0.00 0.00 3.36
588 618 0.597568 TTGGTGCTCGCATTTTCCTG 59.402 50.000 0.00 0.00 0.00 3.86
589 619 0.250684 TGGTGCTCGCATTTTCCTGA 60.251 50.000 0.00 0.00 0.00 3.86
590 620 1.098050 GGTGCTCGCATTTTCCTGAT 58.902 50.000 0.00 0.00 0.00 2.90
591 621 1.474077 GGTGCTCGCATTTTCCTGATT 59.526 47.619 0.00 0.00 0.00 2.57
592 622 2.094545 GGTGCTCGCATTTTCCTGATTT 60.095 45.455 0.00 0.00 0.00 2.17
593 623 3.578688 GTGCTCGCATTTTCCTGATTTT 58.421 40.909 0.00 0.00 0.00 1.82
594 624 4.380444 GGTGCTCGCATTTTCCTGATTTTA 60.380 41.667 0.00 0.00 0.00 1.52
595 625 5.343249 GTGCTCGCATTTTCCTGATTTTAT 58.657 37.500 0.00 0.00 0.00 1.40
596 626 5.807011 GTGCTCGCATTTTCCTGATTTTATT 59.193 36.000 0.00 0.00 0.00 1.40
597 627 6.020360 GTGCTCGCATTTTCCTGATTTTATTC 60.020 38.462 0.00 0.00 0.00 1.75
598 628 6.127647 TGCTCGCATTTTCCTGATTTTATTCT 60.128 34.615 0.00 0.00 0.00 2.40
599 629 7.066887 TGCTCGCATTTTCCTGATTTTATTCTA 59.933 33.333 0.00 0.00 0.00 2.10
600 630 7.589221 GCTCGCATTTTCCTGATTTTATTCTAG 59.411 37.037 0.00 0.00 0.00 2.43
601 631 8.731275 TCGCATTTTCCTGATTTTATTCTAGA 57.269 30.769 0.00 0.00 0.00 2.43
602 632 8.612619 TCGCATTTTCCTGATTTTATTCTAGAC 58.387 33.333 0.00 0.00 0.00 2.59
603 633 7.857885 CGCATTTTCCTGATTTTATTCTAGACC 59.142 37.037 0.00 0.00 0.00 3.85
604 634 8.907885 GCATTTTCCTGATTTTATTCTAGACCT 58.092 33.333 0.00 0.00 0.00 3.85
609 639 9.672673 TTCCTGATTTTATTCTAGACCTTTCAG 57.327 33.333 0.00 1.21 0.00 3.02
610 640 7.770897 TCCTGATTTTATTCTAGACCTTTCAGC 59.229 37.037 0.00 0.00 0.00 4.26
611 641 7.554118 CCTGATTTTATTCTAGACCTTTCAGCA 59.446 37.037 0.00 0.00 0.00 4.41
612 642 8.862325 TGATTTTATTCTAGACCTTTCAGCAA 57.138 30.769 0.00 0.00 0.00 3.91
613 643 9.466497 TGATTTTATTCTAGACCTTTCAGCAAT 57.534 29.630 0.00 0.00 0.00 3.56
614 644 9.727627 GATTTTATTCTAGACCTTTCAGCAATG 57.272 33.333 0.00 0.00 0.00 2.82
615 645 8.635765 TTTTATTCTAGACCTTTCAGCAATGT 57.364 30.769 0.00 0.00 0.00 2.71
616 646 7.849804 TTATTCTAGACCTTTCAGCAATGTC 57.150 36.000 0.00 0.00 31.77 3.06
617 647 4.207891 TCTAGACCTTTCAGCAATGTCC 57.792 45.455 0.00 0.00 31.94 4.02
618 648 2.957402 AGACCTTTCAGCAATGTCCA 57.043 45.000 0.00 0.00 31.94 4.02
619 649 3.446442 AGACCTTTCAGCAATGTCCAT 57.554 42.857 0.00 0.00 31.94 3.41
620 650 3.771216 AGACCTTTCAGCAATGTCCATT 58.229 40.909 0.00 0.00 31.94 3.16
621 651 3.760684 AGACCTTTCAGCAATGTCCATTC 59.239 43.478 0.00 0.00 31.94 2.67
622 652 3.499338 ACCTTTCAGCAATGTCCATTCA 58.501 40.909 0.00 0.00 0.00 2.57
623 653 3.508793 ACCTTTCAGCAATGTCCATTCAG 59.491 43.478 0.00 0.00 0.00 3.02
624 654 3.508793 CCTTTCAGCAATGTCCATTCAGT 59.491 43.478 0.00 0.00 0.00 3.41
625 655 4.482386 CTTTCAGCAATGTCCATTCAGTG 58.518 43.478 0.00 0.00 36.64 3.66
626 656 3.421919 TCAGCAATGTCCATTCAGTGA 57.578 42.857 0.00 0.00 35.78 3.41
627 657 3.340928 TCAGCAATGTCCATTCAGTGAG 58.659 45.455 0.00 0.00 35.78 3.51
628 658 3.008266 TCAGCAATGTCCATTCAGTGAGA 59.992 43.478 0.00 0.00 35.78 3.27
629 659 3.374367 CAGCAATGTCCATTCAGTGAGAG 59.626 47.826 0.00 0.00 35.78 3.20
630 660 2.681848 GCAATGTCCATTCAGTGAGAGG 59.318 50.000 6.60 6.60 35.78 3.69
631 661 3.620719 GCAATGTCCATTCAGTGAGAGGA 60.621 47.826 10.61 10.61 35.78 3.71
632 662 4.190001 CAATGTCCATTCAGTGAGAGGAG 58.810 47.826 14.03 2.01 35.78 3.69
633 663 3.175438 TGTCCATTCAGTGAGAGGAGA 57.825 47.619 14.03 11.08 0.00 3.71
634 664 2.828520 TGTCCATTCAGTGAGAGGAGAC 59.171 50.000 14.03 9.06 0.00 3.36
635 665 2.095461 TCCATTCAGTGAGAGGAGACG 58.905 52.381 10.61 0.00 0.00 4.18
636 666 1.821753 CCATTCAGTGAGAGGAGACGT 59.178 52.381 7.03 0.00 0.00 4.34
637 667 2.232452 CCATTCAGTGAGAGGAGACGTT 59.768 50.000 7.03 0.00 0.00 3.99
638 668 3.506810 CATTCAGTGAGAGGAGACGTTC 58.493 50.000 0.00 0.00 0.00 3.95
639 669 2.570415 TCAGTGAGAGGAGACGTTCT 57.430 50.000 0.00 0.00 0.00 3.01
640 670 2.428491 TCAGTGAGAGGAGACGTTCTC 58.572 52.381 7.84 7.84 42.66 2.87
641 671 1.129624 CAGTGAGAGGAGACGTTCTCG 59.870 57.143 9.74 0.00 44.28 4.04
685 715 4.751843 CGACTTCGTCAATCTCAAGATG 57.248 45.455 0.00 0.00 32.83 2.90
686 716 4.415735 CGACTTCGTCAATCTCAAGATGA 58.584 43.478 0.00 0.00 32.83 2.92
687 717 5.039984 CGACTTCGTCAATCTCAAGATGAT 58.960 41.667 0.00 0.00 32.83 2.45
688 718 5.051841 CGACTTCGTCAATCTCAAGATGATG 60.052 44.000 0.00 0.00 32.83 3.07
689 719 5.728471 ACTTCGTCAATCTCAAGATGATGT 58.272 37.500 0.00 0.00 34.95 3.06
690 720 5.579904 ACTTCGTCAATCTCAAGATGATGTG 59.420 40.000 0.00 0.00 37.02 3.21
691 721 3.867493 TCGTCAATCTCAAGATGATGTGC 59.133 43.478 0.00 0.00 34.49 4.57
692 722 3.002042 CGTCAATCTCAAGATGATGTGCC 59.998 47.826 0.00 0.00 34.49 5.01
693 723 3.002042 GTCAATCTCAAGATGATGTGCCG 59.998 47.826 0.00 0.00 34.49 5.69
694 724 2.251409 ATCTCAAGATGATGTGCCGG 57.749 50.000 0.00 0.00 32.68 6.13
695 725 0.462581 TCTCAAGATGATGTGCCGGC 60.463 55.000 22.73 22.73 0.00 6.13
696 726 0.463295 CTCAAGATGATGTGCCGGCT 60.463 55.000 29.70 7.33 0.00 5.52
697 727 0.462581 TCAAGATGATGTGCCGGCTC 60.463 55.000 29.70 25.38 0.00 4.70
698 728 0.745486 CAAGATGATGTGCCGGCTCA 60.745 55.000 31.27 31.27 0.00 4.26
699 729 0.463295 AAGATGATGTGCCGGCTCAG 60.463 55.000 32.06 0.00 0.00 3.35
700 730 1.153289 GATGATGTGCCGGCTCAGT 60.153 57.895 32.06 21.65 0.00 3.41
701 731 1.153289 ATGATGTGCCGGCTCAGTC 60.153 57.895 32.06 26.67 0.00 3.51
702 732 1.620739 ATGATGTGCCGGCTCAGTCT 61.621 55.000 32.06 18.70 0.00 3.24
703 733 1.078848 GATGTGCCGGCTCAGTCTT 60.079 57.895 32.06 18.34 0.00 3.01
704 734 0.674895 GATGTGCCGGCTCAGTCTTT 60.675 55.000 32.06 17.98 0.00 2.52
705 735 0.674895 ATGTGCCGGCTCAGTCTTTC 60.675 55.000 32.06 10.69 0.00 2.62
706 736 2.048222 TGCCGGCTCAGTCTTTCG 60.048 61.111 29.70 0.00 0.00 3.46
707 737 2.815647 GCCGGCTCAGTCTTTCGG 60.816 66.667 22.15 0.00 43.13 4.30
708 738 2.970639 CCGGCTCAGTCTTTCGGA 59.029 61.111 0.00 0.00 42.94 4.55
709 739 1.153745 CCGGCTCAGTCTTTCGGAG 60.154 63.158 0.00 0.00 42.94 4.63
710 740 1.153745 CGGCTCAGTCTTTCGGAGG 60.154 63.158 0.00 0.00 38.48 4.30
711 741 1.878656 CGGCTCAGTCTTTCGGAGGT 61.879 60.000 0.00 0.00 38.48 3.85
712 742 0.390472 GGCTCAGTCTTTCGGAGGTG 60.390 60.000 0.00 0.00 38.48 4.00
713 743 1.016653 GCTCAGTCTTTCGGAGGTGC 61.017 60.000 0.00 0.00 38.48 5.01
714 744 0.605589 CTCAGTCTTTCGGAGGTGCT 59.394 55.000 0.00 0.00 35.32 4.40
715 745 0.603569 TCAGTCTTTCGGAGGTGCTC 59.396 55.000 0.00 0.00 0.00 4.26
716 746 0.318441 CAGTCTTTCGGAGGTGCTCA 59.682 55.000 0.00 0.00 31.08 4.26
717 747 1.066573 CAGTCTTTCGGAGGTGCTCAT 60.067 52.381 0.00 0.00 31.08 2.90
718 748 2.166459 CAGTCTTTCGGAGGTGCTCATA 59.834 50.000 0.00 0.00 31.08 2.15
719 749 2.428890 AGTCTTTCGGAGGTGCTCATAG 59.571 50.000 0.00 0.00 31.08 2.23
720 750 1.757118 TCTTTCGGAGGTGCTCATAGG 59.243 52.381 0.00 0.00 31.08 2.57
721 751 0.830648 TTTCGGAGGTGCTCATAGGG 59.169 55.000 0.00 0.00 31.08 3.53
722 752 0.032515 TTCGGAGGTGCTCATAGGGA 60.033 55.000 0.00 0.00 31.08 4.20
723 753 0.188587 TCGGAGGTGCTCATAGGGAT 59.811 55.000 0.00 0.00 31.08 3.85
724 754 1.427753 TCGGAGGTGCTCATAGGGATA 59.572 52.381 0.00 0.00 31.08 2.59
725 755 1.821753 CGGAGGTGCTCATAGGGATAG 59.178 57.143 0.00 0.00 31.08 2.08
726 756 2.183679 GGAGGTGCTCATAGGGATAGG 58.816 57.143 0.00 0.00 31.08 2.57
727 757 2.183679 GAGGTGCTCATAGGGATAGGG 58.816 57.143 0.00 0.00 0.00 3.53
728 758 1.509961 AGGTGCTCATAGGGATAGGGT 59.490 52.381 0.00 0.00 0.00 4.34
729 759 1.625818 GGTGCTCATAGGGATAGGGTG 59.374 57.143 0.00 0.00 0.00 4.61
730 760 2.330216 GTGCTCATAGGGATAGGGTGT 58.670 52.381 0.00 0.00 0.00 4.16
731 761 3.507411 GTGCTCATAGGGATAGGGTGTA 58.493 50.000 0.00 0.00 0.00 2.90
732 762 4.097418 GTGCTCATAGGGATAGGGTGTAT 58.903 47.826 0.00 0.00 0.00 2.29
733 763 4.081420 GTGCTCATAGGGATAGGGTGTATG 60.081 50.000 0.00 0.00 0.00 2.39
734 764 4.097418 GCTCATAGGGATAGGGTGTATGT 58.903 47.826 0.00 0.00 0.00 2.29
735 765 4.081420 GCTCATAGGGATAGGGTGTATGTG 60.081 50.000 0.00 0.00 0.00 3.21
736 766 3.838317 TCATAGGGATAGGGTGTATGTGC 59.162 47.826 0.00 0.00 0.00 4.57
737 767 1.048601 AGGGATAGGGTGTATGTGCG 58.951 55.000 0.00 0.00 0.00 5.34
738 768 0.602905 GGGATAGGGTGTATGTGCGC 60.603 60.000 0.00 0.00 0.00 6.09
739 769 0.944311 GGATAGGGTGTATGTGCGCG 60.944 60.000 0.00 0.00 0.00 6.86
740 770 0.249322 GATAGGGTGTATGTGCGCGT 60.249 55.000 8.43 0.00 0.00 6.01
741 771 0.529773 ATAGGGTGTATGTGCGCGTG 60.530 55.000 8.43 0.00 0.00 5.34
742 772 1.879737 TAGGGTGTATGTGCGCGTGT 61.880 55.000 8.43 0.00 0.00 4.49
743 773 2.322081 GGGTGTATGTGCGCGTGTT 61.322 57.895 8.43 0.00 0.00 3.32
744 774 1.131826 GGTGTATGTGCGCGTGTTC 59.868 57.895 8.43 0.00 0.00 3.18
745 775 1.561717 GGTGTATGTGCGCGTGTTCA 61.562 55.000 8.43 2.40 0.00 3.18
746 776 0.442310 GTGTATGTGCGCGTGTTCAT 59.558 50.000 8.43 9.97 0.00 2.57
747 777 1.656594 GTGTATGTGCGCGTGTTCATA 59.343 47.619 8.43 9.00 0.00 2.15
748 778 1.923864 TGTATGTGCGCGTGTTCATAG 59.076 47.619 8.43 0.00 0.00 2.23
749 779 1.257936 GTATGTGCGCGTGTTCATAGG 59.742 52.381 8.43 0.00 0.00 2.57
750 780 1.089481 ATGTGCGCGTGTTCATAGGG 61.089 55.000 8.43 0.00 0.00 3.53
751 781 2.125310 TGCGCGTGTTCATAGGGG 60.125 61.111 8.43 0.00 0.00 4.79
752 782 2.125269 GCGCGTGTTCATAGGGGT 60.125 61.111 8.43 0.00 0.00 4.95
753 783 1.142314 GCGCGTGTTCATAGGGGTA 59.858 57.895 8.43 0.00 0.00 3.69
754 784 0.874607 GCGCGTGTTCATAGGGGTAG 60.875 60.000 8.43 0.00 0.00 3.18
755 785 0.249322 CGCGTGTTCATAGGGGTAGG 60.249 60.000 0.00 0.00 0.00 3.18
756 786 0.106149 GCGTGTTCATAGGGGTAGGG 59.894 60.000 0.00 0.00 0.00 3.53
757 787 1.492764 CGTGTTCATAGGGGTAGGGT 58.507 55.000 0.00 0.00 0.00 4.34
758 788 1.138266 CGTGTTCATAGGGGTAGGGTG 59.862 57.143 0.00 0.00 0.00 4.61
759 789 2.193993 GTGTTCATAGGGGTAGGGTGT 58.806 52.381 0.00 0.00 0.00 4.16
760 790 2.093128 GTGTTCATAGGGGTAGGGTGTG 60.093 54.545 0.00 0.00 0.00 3.82
761 791 2.193993 GTTCATAGGGGTAGGGTGTGT 58.806 52.381 0.00 0.00 0.00 3.72
762 792 1.874129 TCATAGGGGTAGGGTGTGTG 58.126 55.000 0.00 0.00 0.00 3.82
763 793 1.079825 TCATAGGGGTAGGGTGTGTGT 59.920 52.381 0.00 0.00 0.00 3.72
764 794 1.209504 CATAGGGGTAGGGTGTGTGTG 59.790 57.143 0.00 0.00 0.00 3.82
765 795 1.196104 TAGGGGTAGGGTGTGTGTGC 61.196 60.000 0.00 0.00 0.00 4.57
766 796 2.824880 GGGGTAGGGTGTGTGTGCA 61.825 63.158 0.00 0.00 0.00 4.57
767 797 1.378762 GGGTAGGGTGTGTGTGCAT 59.621 57.895 0.00 0.00 0.00 3.96
768 798 0.960364 GGGTAGGGTGTGTGTGCATG 60.960 60.000 0.00 0.00 0.00 4.06
769 799 0.250727 GGTAGGGTGTGTGTGCATGT 60.251 55.000 0.00 0.00 0.00 3.21
770 800 0.874390 GTAGGGTGTGTGTGCATGTG 59.126 55.000 0.00 0.00 0.00 3.21
771 801 0.472044 TAGGGTGTGTGTGCATGTGT 59.528 50.000 0.00 0.00 0.00 3.72
772 802 0.395586 AGGGTGTGTGTGCATGTGTT 60.396 50.000 0.00 0.00 0.00 3.32
773 803 0.030638 GGGTGTGTGTGCATGTGTTC 59.969 55.000 0.00 0.00 0.00 3.18
774 804 0.737804 GGTGTGTGTGCATGTGTTCA 59.262 50.000 0.00 0.00 0.00 3.18
775 805 1.337703 GGTGTGTGTGCATGTGTTCAT 59.662 47.619 0.00 0.00 34.21 2.57
776 806 2.551887 GGTGTGTGTGCATGTGTTCATA 59.448 45.455 0.00 0.00 32.47 2.15
777 807 3.365264 GGTGTGTGTGCATGTGTTCATAG 60.365 47.826 0.00 0.00 32.47 2.23
778 808 2.813172 TGTGTGTGCATGTGTTCATAGG 59.187 45.455 0.00 0.00 32.47 2.57
779 809 2.162208 GTGTGTGCATGTGTTCATAGGG 59.838 50.000 0.00 0.00 32.47 3.53
780 810 1.745087 GTGTGCATGTGTTCATAGGGG 59.255 52.381 0.00 0.00 32.47 4.79
781 811 1.354031 TGTGCATGTGTTCATAGGGGT 59.646 47.619 0.00 0.00 32.47 4.95
782 812 1.745087 GTGCATGTGTTCATAGGGGTG 59.255 52.381 0.00 0.00 32.47 4.61
783 813 1.632920 TGCATGTGTTCATAGGGGTGA 59.367 47.619 0.00 0.00 32.47 4.02
784 814 2.292267 GCATGTGTTCATAGGGGTGAG 58.708 52.381 0.00 0.00 32.47 3.51
785 815 2.292267 CATGTGTTCATAGGGGTGAGC 58.708 52.381 0.00 0.00 32.47 4.26
786 816 0.249120 TGTGTTCATAGGGGTGAGCG 59.751 55.000 0.00 0.00 32.70 5.03
787 817 0.249398 GTGTTCATAGGGGTGAGCGT 59.751 55.000 0.00 0.00 32.70 5.07
788 818 0.535335 TGTTCATAGGGGTGAGCGTC 59.465 55.000 0.00 0.00 32.70 5.19
789 819 0.824759 GTTCATAGGGGTGAGCGTCT 59.175 55.000 0.00 0.00 0.00 4.18
790 820 0.824109 TTCATAGGGGTGAGCGTCTG 59.176 55.000 0.00 0.00 0.00 3.51
791 821 1.227380 CATAGGGGTGAGCGTCTGC 60.227 63.158 0.00 0.00 43.24 4.26
803 833 2.628194 GCGTCTGCGTATGTATTGTG 57.372 50.000 0.00 0.00 40.81 3.33
804 834 1.924524 GCGTCTGCGTATGTATTGTGT 59.075 47.619 0.00 0.00 40.81 3.72
805 835 2.347452 GCGTCTGCGTATGTATTGTGTT 59.653 45.455 0.00 0.00 40.81 3.32
806 836 3.548668 GCGTCTGCGTATGTATTGTGTTA 59.451 43.478 0.00 0.00 40.81 2.41
807 837 4.031991 GCGTCTGCGTATGTATTGTGTTAA 59.968 41.667 0.00 0.00 40.81 2.01
808 838 5.444877 GCGTCTGCGTATGTATTGTGTTAAA 60.445 40.000 0.00 0.00 40.81 1.52
809 839 6.527089 CGTCTGCGTATGTATTGTGTTAAAA 58.473 36.000 0.00 0.00 0.00 1.52
810 840 7.010606 CGTCTGCGTATGTATTGTGTTAAAAA 58.989 34.615 0.00 0.00 0.00 1.94
872 902 2.831685 ATCTACCACGAGTGCAAACA 57.168 45.000 0.00 0.00 0.00 2.83
894 924 4.209703 CACATTTGAGAAACTTGCGCAAAT 59.790 37.500 25.01 12.29 43.34 2.32
896 926 2.314561 TGAGAAACTTGCGCAAATCG 57.685 45.000 25.01 15.15 42.12 3.34
936 966 0.988832 GACAGGTTCCCACACCCATA 59.011 55.000 0.00 0.00 37.58 2.74
937 967 1.564348 GACAGGTTCCCACACCCATAT 59.436 52.381 0.00 0.00 37.58 1.78
973 1003 0.736053 AAACCTCGCTCGCACAAAAA 59.264 45.000 0.00 0.00 0.00 1.94
1911 1941 2.908015 GCCAAGGCCATCGGAGTA 59.092 61.111 5.01 0.00 34.56 2.59
1929 1959 1.139058 GTACTCGGTCCCATGATGCTT 59.861 52.381 0.00 0.00 0.00 3.91
1938 1968 3.317430 GTCCCATGATGCTTGAAGGAATC 59.683 47.826 0.00 0.00 0.00 2.52
2181 2211 0.532640 CGATGATCATGGGGTTCGCA 60.533 55.000 14.30 0.00 0.00 5.10
2280 2310 2.580815 CTCTGCGTCCTCCATGCA 59.419 61.111 0.00 0.00 45.34 3.96
2334 2364 4.021981 TGGATATACTTCAGAGCCATGACG 60.022 45.833 0.00 0.00 0.00 4.35
2370 2400 2.574955 GCCCGGCGAGGATCACTAT 61.575 63.158 9.30 0.00 45.00 2.12
2403 2433 2.243774 ATCTCCTCGGGAAGGCAGGA 62.244 60.000 0.00 0.00 45.78 3.86
2490 2520 2.678934 CTGCTTGGTGCCTGCCAT 60.679 61.111 0.00 0.00 42.00 4.40
2652 2682 1.912043 CTCATGGGGGACAGAGAAGTT 59.088 52.381 0.00 0.00 30.61 2.66
2770 2804 2.309755 TCCTGATGGAAGCACTTGGAAT 59.690 45.455 0.00 0.00 39.87 3.01
2782 2816 3.306225 GCACTTGGAATCATTTTCTGGCA 60.306 43.478 0.00 0.00 0.00 4.92
2811 2845 2.839486 TCAGGCTACAGTGGAAAGTG 57.161 50.000 0.00 0.00 0.00 3.16
2844 2930 6.750501 CAGTTATCTGAGTGAATGCCATTTTG 59.249 38.462 0.00 0.00 43.76 2.44
2845 2931 4.730949 ATCTGAGTGAATGCCATTTTGG 57.269 40.909 0.00 0.00 41.55 3.28
2875 2961 4.074259 TGGATGGAAGTGAATTGACAGTG 58.926 43.478 0.00 0.00 0.00 3.66
2892 2978 3.753272 ACAGTGTTCCTGAATGGATTTCG 59.247 43.478 0.00 0.00 45.68 3.46
2915 3001 4.265073 GCATGATCCAACTGGTAAGAGTT 58.735 43.478 0.00 0.00 36.58 3.01
2920 3006 7.311092 TGATCCAACTGGTAAGAGTTCTAAA 57.689 36.000 0.00 0.00 33.75 1.85
2937 3023 6.703607 AGTTCTAAAGTGATCAATGGCTATCG 59.296 38.462 0.00 0.00 0.00 2.92
2942 3028 4.573900 AGTGATCAATGGCTATCGATTCC 58.426 43.478 1.71 6.33 0.00 3.01
2943 3029 4.040829 AGTGATCAATGGCTATCGATTCCA 59.959 41.667 17.78 17.78 0.00 3.53
3019 3105 8.356657 AGTGTACATACTCATGAATAGCTCTTC 58.643 37.037 0.00 4.93 35.96 2.87
3081 3167 6.069331 ACATAGTCCTGATCGTGTAGGTAAT 58.931 40.000 0.00 0.00 35.54 1.89
3122 3208 2.716217 CTGATGGAGTGGGGAAAACTC 58.284 52.381 0.00 0.00 42.79 3.01
3125 3211 3.140144 TGATGGAGTGGGGAAAACTCTTT 59.860 43.478 3.80 0.00 43.03 2.52
3126 3212 2.944129 TGGAGTGGGGAAAACTCTTTG 58.056 47.619 3.80 0.00 43.03 2.77
3228 3314 1.023513 GCAGGCGATGATATCAGGCC 61.024 60.000 29.84 29.84 44.77 5.19
3384 3470 7.877003 TGTACTTCTCGATAATCTGAGGATTC 58.123 38.462 0.00 0.00 41.75 2.52
3387 3473 3.120165 TCTCGATAATCTGAGGATTCGCG 60.120 47.826 0.00 0.00 41.75 5.87
3405 3491 1.735700 GCGTCATGGTCGATCTTGACA 60.736 52.381 31.94 7.09 39.99 3.58
3468 3554 1.107114 CCGACTATCAGAGCTGGTGT 58.893 55.000 0.00 0.00 0.00 4.16
3470 3556 2.093973 CCGACTATCAGAGCTGGTGTTT 60.094 50.000 0.00 0.00 0.00 2.83
3472 3558 3.367395 CGACTATCAGAGCTGGTGTTTCA 60.367 47.826 0.00 0.00 0.00 2.69
3477 3563 5.796424 ATCAGAGCTGGTGTTTCAAATTT 57.204 34.783 0.00 0.00 0.00 1.82
3493 3579 8.817100 GTTTCAAATTTAAAACAGACTTCCCTG 58.183 33.333 11.38 0.00 39.93 4.45
3495 3581 6.097554 TCAAATTTAAAACAGACTTCCCTGCA 59.902 34.615 0.00 0.00 37.68 4.41
3504 3590 4.038402 ACAGACTTCCCTGCAAAATTCTTG 59.962 41.667 0.00 0.00 37.68 3.02
3511 3597 3.512724 CCCTGCAAAATTCTTGAGACCAT 59.487 43.478 0.00 0.00 0.00 3.55
3513 3599 5.361857 CCCTGCAAAATTCTTGAGACCATAT 59.638 40.000 0.00 0.00 0.00 1.78
3514 3600 6.547141 CCCTGCAAAATTCTTGAGACCATATA 59.453 38.462 0.00 0.00 0.00 0.86
3545 3631 8.825667 TTAAAATGTACCCTCAATTTGCTTTC 57.174 30.769 0.00 0.00 0.00 2.62
3625 3711 6.478512 TGTAGTACATCTGCACATGGATAA 57.521 37.500 6.91 0.00 34.04 1.75
3636 3722 8.065473 TCTGCACATGGATAATTACAAAACAT 57.935 30.769 0.00 0.00 0.00 2.71
3657 3743 3.184382 TGGTCAGTTGATCAGAGGGTA 57.816 47.619 0.00 0.00 30.51 3.69
3663 3749 4.162320 TCAGTTGATCAGAGGGTATTCCAC 59.838 45.833 0.00 0.00 38.24 4.02
3664 3750 4.080919 CAGTTGATCAGAGGGTATTCCACA 60.081 45.833 0.00 0.00 38.24 4.17
3675 3761 5.010282 AGGGTATTCCACAACAGCTAAAAG 58.990 41.667 0.00 0.00 38.24 2.27
3677 3763 5.941647 GGGTATTCCACAACAGCTAAAAGTA 59.058 40.000 0.00 0.00 35.00 2.24
3715 3801 3.127721 GCAAAGTAAGTCTCTCCATTGCC 59.872 47.826 0.00 0.00 36.75 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.307760 CTTTTCGTGTGGCTGTGACC 59.692 55.000 0.00 0.00 0.00 4.02
1 2 0.317020 GCTTTTCGTGTGGCTGTGAC 60.317 55.000 0.00 0.00 0.00 3.67
2 3 0.746204 TGCTTTTCGTGTGGCTGTGA 60.746 50.000 0.00 0.00 0.00 3.58
5 6 1.283793 CCTGCTTTTCGTGTGGCTG 59.716 57.895 0.00 0.00 0.00 4.85
6 7 0.107831 TACCTGCTTTTCGTGTGGCT 59.892 50.000 0.00 0.00 0.00 4.75
7 8 0.237498 GTACCTGCTTTTCGTGTGGC 59.763 55.000 0.00 0.00 0.00 5.01
8 9 1.531149 CAGTACCTGCTTTTCGTGTGG 59.469 52.381 0.00 0.00 0.00 4.17
20 21 1.995484 CATGTTCACGAGCAGTACCTG 59.005 52.381 0.00 0.00 34.12 4.00
21 22 1.893137 TCATGTTCACGAGCAGTACCT 59.107 47.619 0.00 0.00 0.00 3.08
22 23 2.363788 TCATGTTCACGAGCAGTACC 57.636 50.000 0.00 0.00 0.00 3.34
23 24 3.926527 TCATTCATGTTCACGAGCAGTAC 59.073 43.478 0.00 0.00 0.00 2.73
24 25 4.186856 TCATTCATGTTCACGAGCAGTA 57.813 40.909 0.00 0.00 0.00 2.74
25 26 3.044235 TCATTCATGTTCACGAGCAGT 57.956 42.857 0.00 0.00 0.00 4.40
26 27 4.611310 ATTCATTCATGTTCACGAGCAG 57.389 40.909 0.00 0.00 0.00 4.24
27 28 5.065090 CCTAATTCATTCATGTTCACGAGCA 59.935 40.000 0.00 0.00 0.00 4.26
28 29 5.294306 TCCTAATTCATTCATGTTCACGAGC 59.706 40.000 0.00 0.00 0.00 5.03
29 30 6.908870 TCCTAATTCATTCATGTTCACGAG 57.091 37.500 0.00 0.00 0.00 4.18
30 31 7.680442 TTTCCTAATTCATTCATGTTCACGA 57.320 32.000 0.00 0.00 0.00 4.35
31 32 7.807433 TGTTTTCCTAATTCATTCATGTTCACG 59.193 33.333 0.00 0.00 0.00 4.35
32 33 9.132521 CTGTTTTCCTAATTCATTCATGTTCAC 57.867 33.333 0.00 0.00 0.00 3.18
33 34 9.076781 TCTGTTTTCCTAATTCATTCATGTTCA 57.923 29.630 0.00 0.00 0.00 3.18
42 43 9.844257 CCTTCTCTATCTGTTTTCCTAATTCAT 57.156 33.333 0.00 0.00 0.00 2.57
43 44 8.826765 ACCTTCTCTATCTGTTTTCCTAATTCA 58.173 33.333 0.00 0.00 0.00 2.57
44 45 9.103861 CACCTTCTCTATCTGTTTTCCTAATTC 57.896 37.037 0.00 0.00 0.00 2.17
45 46 8.826765 TCACCTTCTCTATCTGTTTTCCTAATT 58.173 33.333 0.00 0.00 0.00 1.40
46 47 8.380742 TCACCTTCTCTATCTGTTTTCCTAAT 57.619 34.615 0.00 0.00 0.00 1.73
47 48 7.792364 TCACCTTCTCTATCTGTTTTCCTAA 57.208 36.000 0.00 0.00 0.00 2.69
48 49 7.979786 ATCACCTTCTCTATCTGTTTTCCTA 57.020 36.000 0.00 0.00 0.00 2.94
49 50 6.882768 ATCACCTTCTCTATCTGTTTTCCT 57.117 37.500 0.00 0.00 0.00 3.36
50 51 7.334858 AGAATCACCTTCTCTATCTGTTTTCC 58.665 38.462 0.00 0.00 40.26 3.13
51 52 8.785329 AAGAATCACCTTCTCTATCTGTTTTC 57.215 34.615 0.00 0.00 43.60 2.29
52 53 9.579932 AAAAGAATCACCTTCTCTATCTGTTTT 57.420 29.630 0.00 0.00 43.60 2.43
53 54 9.579932 AAAAAGAATCACCTTCTCTATCTGTTT 57.420 29.630 0.00 0.00 43.60 2.83
54 55 9.007901 CAAAAAGAATCACCTTCTCTATCTGTT 57.992 33.333 0.00 0.00 43.60 3.16
55 56 8.160106 ACAAAAAGAATCACCTTCTCTATCTGT 58.840 33.333 0.00 0.00 43.60 3.41
56 57 8.558973 ACAAAAAGAATCACCTTCTCTATCTG 57.441 34.615 0.00 0.00 43.60 2.90
61 62 8.924511 TCATAACAAAAAGAATCACCTTCTCT 57.075 30.769 0.00 0.00 43.60 3.10
62 63 9.780413 GATCATAACAAAAAGAATCACCTTCTC 57.220 33.333 0.00 0.00 43.60 2.87
63 64 9.525826 AGATCATAACAAAAAGAATCACCTTCT 57.474 29.630 0.00 0.00 46.44 2.85
64 65 9.780413 GAGATCATAACAAAAAGAATCACCTTC 57.220 33.333 0.00 0.00 0.00 3.46
65 66 8.743714 GGAGATCATAACAAAAAGAATCACCTT 58.256 33.333 0.00 0.00 0.00 3.50
66 67 7.340487 GGGAGATCATAACAAAAAGAATCACCT 59.660 37.037 0.00 0.00 0.00 4.00
67 68 7.340487 AGGGAGATCATAACAAAAAGAATCACC 59.660 37.037 0.00 0.00 0.00 4.02
68 69 8.286191 AGGGAGATCATAACAAAAAGAATCAC 57.714 34.615 0.00 0.00 0.00 3.06
69 70 8.884124 AAGGGAGATCATAACAAAAAGAATCA 57.116 30.769 0.00 0.00 0.00 2.57
70 71 9.578439 CAAAGGGAGATCATAACAAAAAGAATC 57.422 33.333 0.00 0.00 0.00 2.52
71 72 9.093458 ACAAAGGGAGATCATAACAAAAAGAAT 57.907 29.630 0.00 0.00 0.00 2.40
72 73 8.359642 CACAAAGGGAGATCATAACAAAAAGAA 58.640 33.333 0.00 0.00 0.00 2.52
73 74 7.505585 ACACAAAGGGAGATCATAACAAAAAGA 59.494 33.333 0.00 0.00 0.00 2.52
74 75 7.661040 ACACAAAGGGAGATCATAACAAAAAG 58.339 34.615 0.00 0.00 0.00 2.27
75 76 7.595819 ACACAAAGGGAGATCATAACAAAAA 57.404 32.000 0.00 0.00 0.00 1.94
76 77 8.877864 ATACACAAAGGGAGATCATAACAAAA 57.122 30.769 0.00 0.00 0.00 2.44
77 78 9.391006 GTATACACAAAGGGAGATCATAACAAA 57.609 33.333 0.00 0.00 0.00 2.83
78 79 8.544622 TGTATACACAAAGGGAGATCATAACAA 58.455 33.333 0.08 0.00 0.00 2.83
79 80 8.084985 TGTATACACAAAGGGAGATCATAACA 57.915 34.615 0.08 0.00 0.00 2.41
115 116 9.950496 GGGGATTAGTAATATGCATATATCTGG 57.050 37.037 19.39 0.00 0.00 3.86
121 122 9.686683 GAACAAGGGGATTAGTAATATGCATAT 57.313 33.333 13.63 13.63 0.00 1.78
122 123 8.107095 GGAACAAGGGGATTAGTAATATGCATA 58.893 37.037 9.27 9.27 0.00 3.14
123 124 6.948309 GGAACAAGGGGATTAGTAATATGCAT 59.052 38.462 3.79 3.79 0.00 3.96
124 125 6.126332 TGGAACAAGGGGATTAGTAATATGCA 60.126 38.462 0.00 0.00 31.92 3.96
125 126 6.303839 TGGAACAAGGGGATTAGTAATATGC 58.696 40.000 0.00 0.00 31.92 3.14
179 180 9.574516 AATAAACTTGGTCAATCTCTACAAAGT 57.425 29.630 0.00 0.00 40.77 2.66
246 262 6.379703 TGCATACAACATGGGTTAGCTTTTAT 59.620 34.615 0.00 0.00 34.87 1.40
254 270 5.012893 TGTCATTGCATACAACATGGGTTA 58.987 37.500 0.00 0.00 38.99 2.85
255 271 3.831333 TGTCATTGCATACAACATGGGTT 59.169 39.130 0.00 0.00 38.99 4.11
257 273 4.659111 ATGTCATTGCATACAACATGGG 57.341 40.909 0.00 0.00 38.99 4.00
373 402 3.849574 TGTTTCATACCCTCTCCATTCCA 59.150 43.478 0.00 0.00 0.00 3.53
429 459 4.919206 TGCAAAAGTATATGCATTGACCG 58.081 39.130 3.54 0.00 46.87 4.79
447 477 9.979578 AAAAACAGTGATCACTAATTTATGCAA 57.020 25.926 27.44 0.00 40.20 4.08
466 496 7.358352 GGTTGATTCGCAATTCTGTAAAAACAG 60.358 37.037 0.00 0.00 39.03 3.16
473 503 4.154015 CACTGGTTGATTCGCAATTCTGTA 59.846 41.667 0.00 0.00 39.03 2.74
474 504 3.058016 CACTGGTTGATTCGCAATTCTGT 60.058 43.478 0.00 0.00 39.03 3.41
475 505 3.189080 TCACTGGTTGATTCGCAATTCTG 59.811 43.478 0.00 0.00 39.03 3.02
476 506 3.411446 TCACTGGTTGATTCGCAATTCT 58.589 40.909 0.00 0.00 39.03 2.40
477 507 3.829886 TCACTGGTTGATTCGCAATTC 57.170 42.857 0.00 0.00 39.03 2.17
487 517 8.152898 CCTCATAATCATCTAATCACTGGTTGA 58.847 37.037 0.00 0.00 39.11 3.18
488 518 8.152898 TCCTCATAATCATCTAATCACTGGTTG 58.847 37.037 0.00 0.00 0.00 3.77
489 519 8.153550 GTCCTCATAATCATCTAATCACTGGTT 58.846 37.037 0.00 0.00 0.00 3.67
490 520 7.290948 TGTCCTCATAATCATCTAATCACTGGT 59.709 37.037 0.00 0.00 0.00 4.00
491 521 7.674120 TGTCCTCATAATCATCTAATCACTGG 58.326 38.462 0.00 0.00 0.00 4.00
492 522 8.366401 ACTGTCCTCATAATCATCTAATCACTG 58.634 37.037 0.00 0.00 0.00 3.66
493 523 8.366401 CACTGTCCTCATAATCATCTAATCACT 58.634 37.037 0.00 0.00 0.00 3.41
494 524 7.601886 CCACTGTCCTCATAATCATCTAATCAC 59.398 40.741 0.00 0.00 0.00 3.06
495 525 7.290948 ACCACTGTCCTCATAATCATCTAATCA 59.709 37.037 0.00 0.00 0.00 2.57
496 526 7.675062 ACCACTGTCCTCATAATCATCTAATC 58.325 38.462 0.00 0.00 0.00 1.75
497 527 7.623999 ACCACTGTCCTCATAATCATCTAAT 57.376 36.000 0.00 0.00 0.00 1.73
498 528 8.727100 ATACCACTGTCCTCATAATCATCTAA 57.273 34.615 0.00 0.00 0.00 2.10
499 529 8.727100 AATACCACTGTCCTCATAATCATCTA 57.273 34.615 0.00 0.00 0.00 1.98
500 530 7.256475 GGAATACCACTGTCCTCATAATCATCT 60.256 40.741 0.00 0.00 35.97 2.90
501 531 6.876257 GGAATACCACTGTCCTCATAATCATC 59.124 42.308 0.00 0.00 35.97 2.92
502 532 6.240002 GGGAATACCACTGTCCTCATAATCAT 60.240 42.308 0.00 0.00 39.85 2.45
503 533 5.071788 GGGAATACCACTGTCCTCATAATCA 59.928 44.000 0.00 0.00 39.85 2.57
504 534 5.071788 TGGGAATACCACTGTCCTCATAATC 59.928 44.000 0.00 0.00 46.80 1.75
505 535 4.975147 TGGGAATACCACTGTCCTCATAAT 59.025 41.667 0.00 0.00 46.80 1.28
506 536 4.367166 TGGGAATACCACTGTCCTCATAA 58.633 43.478 0.00 0.00 46.80 1.90
507 537 3.967326 CTGGGAATACCACTGTCCTCATA 59.033 47.826 0.00 0.00 46.80 2.15
508 538 2.774234 CTGGGAATACCACTGTCCTCAT 59.226 50.000 0.00 0.00 46.80 2.90
509 539 2.187958 CTGGGAATACCACTGTCCTCA 58.812 52.381 0.00 0.00 46.80 3.86
510 540 2.168728 GACTGGGAATACCACTGTCCTC 59.831 54.545 0.00 0.00 46.80 3.71
511 541 2.188817 GACTGGGAATACCACTGTCCT 58.811 52.381 0.00 0.00 46.80 3.85
512 542 1.209747 GGACTGGGAATACCACTGTCC 59.790 57.143 7.12 7.12 46.80 4.02
513 543 1.906574 TGGACTGGGAATACCACTGTC 59.093 52.381 0.00 0.00 46.80 3.51
514 544 1.628846 GTGGACTGGGAATACCACTGT 59.371 52.381 0.00 0.00 46.80 3.55
515 545 1.628340 TGTGGACTGGGAATACCACTG 59.372 52.381 14.63 0.00 46.80 3.66
516 546 2.038863 TGTGGACTGGGAATACCACT 57.961 50.000 14.63 0.00 46.80 4.00
517 547 2.304761 TCTTGTGGACTGGGAATACCAC 59.695 50.000 0.00 0.00 46.80 4.16
519 549 2.572104 ACTCTTGTGGACTGGGAATACC 59.428 50.000 0.00 0.00 40.81 2.73
520 550 3.983044 ACTCTTGTGGACTGGGAATAC 57.017 47.619 0.00 0.00 0.00 1.89
521 551 3.907474 TGAACTCTTGTGGACTGGGAATA 59.093 43.478 0.00 0.00 0.00 1.75
522 552 2.711009 TGAACTCTTGTGGACTGGGAAT 59.289 45.455 0.00 0.00 0.00 3.01
523 553 2.123589 TGAACTCTTGTGGACTGGGAA 58.876 47.619 0.00 0.00 0.00 3.97
524 554 1.801242 TGAACTCTTGTGGACTGGGA 58.199 50.000 0.00 0.00 0.00 4.37
525 555 2.158755 AGTTGAACTCTTGTGGACTGGG 60.159 50.000 0.00 0.00 0.00 4.45
526 556 3.199880 AGTTGAACTCTTGTGGACTGG 57.800 47.619 0.00 0.00 0.00 4.00
527 557 7.378966 TCTATAAGTTGAACTCTTGTGGACTG 58.621 38.462 0.00 0.00 0.00 3.51
528 558 7.233757 ACTCTATAAGTTGAACTCTTGTGGACT 59.766 37.037 0.00 0.00 33.03 3.85
529 559 7.379750 ACTCTATAAGTTGAACTCTTGTGGAC 58.620 38.462 0.00 0.00 33.03 4.02
530 560 7.540474 ACTCTATAAGTTGAACTCTTGTGGA 57.460 36.000 0.00 0.00 33.03 4.02
543 573 8.018286 ATGGCACCAATGTCAACTCTATAAGTT 61.018 37.037 0.00 0.00 45.49 2.66
544 574 5.186198 GGCACCAATGTCAACTCTATAAGT 58.814 41.667 0.00 0.00 41.10 2.24
545 575 5.185454 TGGCACCAATGTCAACTCTATAAG 58.815 41.667 0.00 0.00 37.55 1.73
546 576 5.172687 TGGCACCAATGTCAACTCTATAA 57.827 39.130 0.00 0.00 37.55 0.98
547 577 4.835284 TGGCACCAATGTCAACTCTATA 57.165 40.909 0.00 0.00 37.55 1.31
548 578 3.719268 TGGCACCAATGTCAACTCTAT 57.281 42.857 0.00 0.00 37.55 1.98
549 579 3.719268 ATGGCACCAATGTCAACTCTA 57.281 42.857 0.00 0.00 45.49 2.43
550 580 2.559668 CAATGGCACCAATGTCAACTCT 59.440 45.455 0.00 0.00 45.49 3.24
551 581 2.353011 CCAATGGCACCAATGTCAACTC 60.353 50.000 4.12 0.00 45.49 3.01
552 582 1.619827 CCAATGGCACCAATGTCAACT 59.380 47.619 4.12 0.00 45.49 3.16
553 583 1.344114 ACCAATGGCACCAATGTCAAC 59.656 47.619 0.00 0.00 45.49 3.18
554 584 1.343789 CACCAATGGCACCAATGTCAA 59.656 47.619 0.00 0.00 45.49 3.18
555 585 0.967662 CACCAATGGCACCAATGTCA 59.032 50.000 0.00 0.00 46.67 3.58
556 586 0.390209 GCACCAATGGCACCAATGTC 60.390 55.000 0.00 0.00 0.00 3.06
557 587 0.832983 AGCACCAATGGCACCAATGT 60.833 50.000 0.00 0.00 0.00 2.71
558 588 0.108520 GAGCACCAATGGCACCAATG 60.109 55.000 0.00 0.00 0.00 2.82
559 589 1.597797 CGAGCACCAATGGCACCAAT 61.598 55.000 0.00 0.00 0.00 3.16
560 590 2.267351 CGAGCACCAATGGCACCAA 61.267 57.895 0.00 0.00 0.00 3.67
561 591 2.672651 CGAGCACCAATGGCACCA 60.673 61.111 0.00 0.00 0.00 4.17
562 592 4.120331 GCGAGCACCAATGGCACC 62.120 66.667 0.00 0.00 0.00 5.01
563 593 2.216750 AATGCGAGCACCAATGGCAC 62.217 55.000 0.00 0.00 36.31 5.01
564 594 1.534336 AAATGCGAGCACCAATGGCA 61.534 50.000 0.00 0.00 38.09 4.92
565 595 0.390209 AAAATGCGAGCACCAATGGC 60.390 50.000 0.00 0.00 0.00 4.40
566 596 1.632422 GAAAATGCGAGCACCAATGG 58.368 50.000 0.00 0.00 0.00 3.16
567 597 1.203052 AGGAAAATGCGAGCACCAATG 59.797 47.619 0.00 0.00 0.00 2.82
568 598 1.203052 CAGGAAAATGCGAGCACCAAT 59.797 47.619 0.00 0.00 0.00 3.16
569 599 0.597568 CAGGAAAATGCGAGCACCAA 59.402 50.000 0.00 0.00 0.00 3.67
570 600 0.250684 TCAGGAAAATGCGAGCACCA 60.251 50.000 0.00 0.00 0.00 4.17
571 601 1.098050 ATCAGGAAAATGCGAGCACC 58.902 50.000 0.00 0.00 0.00 5.01
572 602 2.927553 AATCAGGAAAATGCGAGCAC 57.072 45.000 0.00 0.00 0.00 4.40
573 603 3.940209 AAAATCAGGAAAATGCGAGCA 57.060 38.095 0.00 0.00 0.00 4.26
574 604 6.268566 AGAATAAAATCAGGAAAATGCGAGC 58.731 36.000 0.00 0.00 0.00 5.03
575 605 8.830580 TCTAGAATAAAATCAGGAAAATGCGAG 58.169 33.333 0.00 0.00 0.00 5.03
576 606 8.612619 GTCTAGAATAAAATCAGGAAAATGCGA 58.387 33.333 0.00 0.00 0.00 5.10
577 607 7.857885 GGTCTAGAATAAAATCAGGAAAATGCG 59.142 37.037 0.00 0.00 0.00 4.73
578 608 8.907885 AGGTCTAGAATAAAATCAGGAAAATGC 58.092 33.333 0.00 0.00 0.00 3.56
583 613 9.672673 CTGAAAGGTCTAGAATAAAATCAGGAA 57.327 33.333 0.00 0.00 0.00 3.36
584 614 7.770897 GCTGAAAGGTCTAGAATAAAATCAGGA 59.229 37.037 16.66 0.00 33.10 3.86
585 615 7.554118 TGCTGAAAGGTCTAGAATAAAATCAGG 59.446 37.037 16.66 5.74 33.10 3.86
586 616 8.498054 TGCTGAAAGGTCTAGAATAAAATCAG 57.502 34.615 13.20 13.20 35.02 2.90
587 617 8.862325 TTGCTGAAAGGTCTAGAATAAAATCA 57.138 30.769 0.00 0.00 0.00 2.57
588 618 9.727627 CATTGCTGAAAGGTCTAGAATAAAATC 57.272 33.333 0.00 0.00 0.00 2.17
589 619 9.247861 ACATTGCTGAAAGGTCTAGAATAAAAT 57.752 29.630 0.00 0.00 0.00 1.82
590 620 8.635765 ACATTGCTGAAAGGTCTAGAATAAAA 57.364 30.769 0.00 0.00 0.00 1.52
591 621 7.336931 GGACATTGCTGAAAGGTCTAGAATAAA 59.663 37.037 12.47 0.00 46.44 1.40
592 622 6.823689 GGACATTGCTGAAAGGTCTAGAATAA 59.176 38.462 12.47 0.00 46.44 1.40
593 623 6.070251 TGGACATTGCTGAAAGGTCTAGAATA 60.070 38.462 12.47 0.00 46.44 1.75
594 624 5.189180 GGACATTGCTGAAAGGTCTAGAAT 58.811 41.667 12.47 0.00 46.44 2.40
595 625 4.041567 TGGACATTGCTGAAAGGTCTAGAA 59.958 41.667 12.47 0.00 46.44 2.10
596 626 3.582647 TGGACATTGCTGAAAGGTCTAGA 59.417 43.478 12.47 0.00 46.44 2.43
597 627 3.942829 TGGACATTGCTGAAAGGTCTAG 58.057 45.455 12.47 0.00 46.44 2.43
598 628 4.574674 ATGGACATTGCTGAAAGGTCTA 57.425 40.909 12.47 7.37 46.44 2.59
599 629 2.957402 TGGACATTGCTGAAAGGTCT 57.043 45.000 12.47 0.00 46.44 3.85
600 630 3.507233 TGAATGGACATTGCTGAAAGGTC 59.493 43.478 4.60 4.60 46.49 3.85
601 631 3.499338 TGAATGGACATTGCTGAAAGGT 58.501 40.909 1.69 0.00 34.93 3.50
602 632 3.508793 ACTGAATGGACATTGCTGAAAGG 59.491 43.478 1.69 0.00 0.00 3.11
603 633 4.216902 TCACTGAATGGACATTGCTGAAAG 59.783 41.667 1.69 0.00 0.00 2.62
604 634 4.143543 TCACTGAATGGACATTGCTGAAA 58.856 39.130 1.69 0.00 0.00 2.69
605 635 3.753815 TCACTGAATGGACATTGCTGAA 58.246 40.909 1.69 0.00 0.00 3.02
606 636 3.008266 TCTCACTGAATGGACATTGCTGA 59.992 43.478 1.69 0.19 0.00 4.26
607 637 3.340928 TCTCACTGAATGGACATTGCTG 58.659 45.455 1.69 2.16 0.00 4.41
608 638 3.607741 CTCTCACTGAATGGACATTGCT 58.392 45.455 1.69 0.00 0.00 3.91
609 639 2.681848 CCTCTCACTGAATGGACATTGC 59.318 50.000 1.69 0.00 0.00 3.56
610 640 4.081254 TCTCCTCTCACTGAATGGACATTG 60.081 45.833 1.69 0.00 0.00 2.82
611 641 4.081198 GTCTCCTCTCACTGAATGGACATT 60.081 45.833 0.00 0.00 0.00 2.71
612 642 3.450457 GTCTCCTCTCACTGAATGGACAT 59.550 47.826 0.00 0.00 0.00 3.06
613 643 2.828520 GTCTCCTCTCACTGAATGGACA 59.171 50.000 0.00 0.00 0.00 4.02
614 644 2.159310 CGTCTCCTCTCACTGAATGGAC 60.159 54.545 0.00 0.00 0.00 4.02
615 645 2.095461 CGTCTCCTCTCACTGAATGGA 58.905 52.381 1.18 1.18 0.00 3.41
616 646 1.821753 ACGTCTCCTCTCACTGAATGG 59.178 52.381 0.00 0.00 0.00 3.16
617 647 3.192422 AGAACGTCTCCTCTCACTGAATG 59.808 47.826 0.00 0.00 0.00 2.67
618 648 3.426615 AGAACGTCTCCTCTCACTGAAT 58.573 45.455 0.00 0.00 0.00 2.57
619 649 2.814919 GAGAACGTCTCCTCTCACTGAA 59.185 50.000 9.58 0.00 37.55 3.02
620 650 2.428491 GAGAACGTCTCCTCTCACTGA 58.572 52.381 9.58 0.00 37.55 3.41
621 651 1.129624 CGAGAACGTCTCCTCTCACTG 59.870 57.143 13.79 0.00 40.34 3.66
622 652 1.444836 CGAGAACGTCTCCTCTCACT 58.555 55.000 13.79 0.00 40.34 3.41
623 653 3.980136 CGAGAACGTCTCCTCTCAC 57.020 57.895 13.79 0.00 40.34 3.51
665 695 5.809562 ACATCATCTTGAGATTGACGAAGTC 59.190 40.000 0.00 0.00 45.49 3.01
666 696 5.579904 CACATCATCTTGAGATTGACGAAGT 59.420 40.000 0.00 0.00 36.31 3.01
667 697 5.502058 GCACATCATCTTGAGATTGACGAAG 60.502 44.000 0.00 0.00 31.21 3.79
668 698 4.330894 GCACATCATCTTGAGATTGACGAA 59.669 41.667 0.00 0.00 31.21 3.85
669 699 3.867493 GCACATCATCTTGAGATTGACGA 59.133 43.478 0.00 0.00 31.21 4.20
670 700 3.002042 GGCACATCATCTTGAGATTGACG 59.998 47.826 0.90 0.00 31.21 4.35
671 701 3.002042 CGGCACATCATCTTGAGATTGAC 59.998 47.826 0.90 0.00 31.21 3.18
672 702 3.200483 CGGCACATCATCTTGAGATTGA 58.800 45.455 0.90 0.00 31.21 2.57
673 703 2.289820 CCGGCACATCATCTTGAGATTG 59.710 50.000 0.00 0.00 31.21 2.67
674 704 2.569059 CCGGCACATCATCTTGAGATT 58.431 47.619 0.00 0.00 31.21 2.40
675 705 1.813092 GCCGGCACATCATCTTGAGAT 60.813 52.381 24.80 0.00 34.56 2.75
676 706 0.462581 GCCGGCACATCATCTTGAGA 60.463 55.000 24.80 0.00 0.00 3.27
677 707 0.463295 AGCCGGCACATCATCTTGAG 60.463 55.000 31.54 0.00 0.00 3.02
678 708 0.462581 GAGCCGGCACATCATCTTGA 60.463 55.000 31.54 0.00 0.00 3.02
679 709 0.745486 TGAGCCGGCACATCATCTTG 60.745 55.000 31.54 0.00 0.00 3.02
680 710 0.463295 CTGAGCCGGCACATCATCTT 60.463 55.000 31.54 3.33 0.00 2.40
681 711 1.145598 CTGAGCCGGCACATCATCT 59.854 57.895 31.54 4.27 0.00 2.90
682 712 1.153289 ACTGAGCCGGCACATCATC 60.153 57.895 31.54 16.99 0.00 2.92
683 713 1.153289 GACTGAGCCGGCACATCAT 60.153 57.895 31.54 16.80 0.00 2.45
684 714 1.830587 AAGACTGAGCCGGCACATCA 61.831 55.000 31.54 22.44 0.00 3.07
685 715 0.674895 AAAGACTGAGCCGGCACATC 60.675 55.000 31.54 24.45 0.00 3.06
686 716 0.674895 GAAAGACTGAGCCGGCACAT 60.675 55.000 31.54 17.99 0.00 3.21
687 717 1.301716 GAAAGACTGAGCCGGCACA 60.302 57.895 31.54 28.20 0.00 4.57
688 718 2.383527 CGAAAGACTGAGCCGGCAC 61.384 63.158 31.54 24.60 0.00 5.01
689 719 2.048222 CGAAAGACTGAGCCGGCA 60.048 61.111 31.54 7.98 0.00 5.69
690 720 2.815647 CCGAAAGACTGAGCCGGC 60.816 66.667 21.89 21.89 33.47 6.13
691 721 1.153745 CTCCGAAAGACTGAGCCGG 60.154 63.158 0.00 0.00 41.36 6.13
692 722 1.153745 CCTCCGAAAGACTGAGCCG 60.154 63.158 0.00 0.00 0.00 5.52
693 723 0.390472 CACCTCCGAAAGACTGAGCC 60.390 60.000 0.00 0.00 0.00 4.70
694 724 1.016653 GCACCTCCGAAAGACTGAGC 61.017 60.000 0.00 0.00 0.00 4.26
695 725 0.605589 AGCACCTCCGAAAGACTGAG 59.394 55.000 0.00 0.00 0.00 3.35
696 726 0.603569 GAGCACCTCCGAAAGACTGA 59.396 55.000 0.00 0.00 0.00 3.41
697 727 0.318441 TGAGCACCTCCGAAAGACTG 59.682 55.000 0.00 0.00 0.00 3.51
698 728 1.270907 ATGAGCACCTCCGAAAGACT 58.729 50.000 0.00 0.00 0.00 3.24
699 729 2.482142 CCTATGAGCACCTCCGAAAGAC 60.482 54.545 0.00 0.00 0.00 3.01
700 730 1.757118 CCTATGAGCACCTCCGAAAGA 59.243 52.381 0.00 0.00 0.00 2.52
701 731 1.202580 CCCTATGAGCACCTCCGAAAG 60.203 57.143 0.00 0.00 0.00 2.62
702 732 0.830648 CCCTATGAGCACCTCCGAAA 59.169 55.000 0.00 0.00 0.00 3.46
703 733 0.032515 TCCCTATGAGCACCTCCGAA 60.033 55.000 0.00 0.00 0.00 4.30
704 734 0.188587 ATCCCTATGAGCACCTCCGA 59.811 55.000 0.00 0.00 0.00 4.55
705 735 1.821753 CTATCCCTATGAGCACCTCCG 59.178 57.143 0.00 0.00 0.00 4.63
706 736 2.183679 CCTATCCCTATGAGCACCTCC 58.816 57.143 0.00 0.00 0.00 4.30
707 737 2.183679 CCCTATCCCTATGAGCACCTC 58.816 57.143 0.00 0.00 0.00 3.85
708 738 1.509961 ACCCTATCCCTATGAGCACCT 59.490 52.381 0.00 0.00 0.00 4.00
709 739 1.625818 CACCCTATCCCTATGAGCACC 59.374 57.143 0.00 0.00 0.00 5.01
710 740 2.330216 ACACCCTATCCCTATGAGCAC 58.670 52.381 0.00 0.00 0.00 4.40
711 741 2.795291 ACACCCTATCCCTATGAGCA 57.205 50.000 0.00 0.00 0.00 4.26
712 742 4.081420 CACATACACCCTATCCCTATGAGC 60.081 50.000 0.00 0.00 0.00 4.26
713 743 4.081420 GCACATACACCCTATCCCTATGAG 60.081 50.000 0.00 0.00 0.00 2.90
714 744 3.838317 GCACATACACCCTATCCCTATGA 59.162 47.826 0.00 0.00 0.00 2.15
715 745 3.368427 CGCACATACACCCTATCCCTATG 60.368 52.174 0.00 0.00 0.00 2.23
716 746 2.832129 CGCACATACACCCTATCCCTAT 59.168 50.000 0.00 0.00 0.00 2.57
717 747 2.244695 CGCACATACACCCTATCCCTA 58.755 52.381 0.00 0.00 0.00 3.53
718 748 1.048601 CGCACATACACCCTATCCCT 58.951 55.000 0.00 0.00 0.00 4.20
719 749 0.602905 GCGCACATACACCCTATCCC 60.603 60.000 0.30 0.00 0.00 3.85
720 750 0.944311 CGCGCACATACACCCTATCC 60.944 60.000 8.75 0.00 0.00 2.59
721 751 0.249322 ACGCGCACATACACCCTATC 60.249 55.000 5.73 0.00 0.00 2.08
722 752 0.529773 CACGCGCACATACACCCTAT 60.530 55.000 5.73 0.00 0.00 2.57
723 753 1.153726 CACGCGCACATACACCCTA 60.154 57.895 5.73 0.00 0.00 3.53
724 754 2.434185 CACGCGCACATACACCCT 60.434 61.111 5.73 0.00 0.00 4.34
725 755 2.235536 GAACACGCGCACATACACCC 62.236 60.000 5.73 0.00 0.00 4.61
726 756 1.131826 GAACACGCGCACATACACC 59.868 57.895 5.73 0.00 0.00 4.16
727 757 0.442310 ATGAACACGCGCACATACAC 59.558 50.000 5.73 0.00 0.00 2.90
728 758 1.923864 CTATGAACACGCGCACATACA 59.076 47.619 5.73 1.74 0.00 2.29
729 759 1.257936 CCTATGAACACGCGCACATAC 59.742 52.381 5.73 0.00 0.00 2.39
730 760 1.566404 CCTATGAACACGCGCACATA 58.434 50.000 5.73 10.15 0.00 2.29
731 761 1.089481 CCCTATGAACACGCGCACAT 61.089 55.000 5.73 9.49 0.00 3.21
732 762 1.739929 CCCTATGAACACGCGCACA 60.740 57.895 5.73 1.21 0.00 4.57
733 763 2.461110 CCCCTATGAACACGCGCAC 61.461 63.158 5.73 0.00 0.00 5.34
734 764 1.605971 TACCCCTATGAACACGCGCA 61.606 55.000 5.73 0.00 0.00 6.09
735 765 0.874607 CTACCCCTATGAACACGCGC 60.875 60.000 5.73 0.00 0.00 6.86
736 766 0.249322 CCTACCCCTATGAACACGCG 60.249 60.000 3.53 3.53 0.00 6.01
737 767 0.106149 CCCTACCCCTATGAACACGC 59.894 60.000 0.00 0.00 0.00 5.34
738 768 1.138266 CACCCTACCCCTATGAACACG 59.862 57.143 0.00 0.00 0.00 4.49
739 769 2.093128 CACACCCTACCCCTATGAACAC 60.093 54.545 0.00 0.00 0.00 3.32
740 770 2.193127 CACACCCTACCCCTATGAACA 58.807 52.381 0.00 0.00 0.00 3.18
741 771 2.093128 CACACACCCTACCCCTATGAAC 60.093 54.545 0.00 0.00 0.00 3.18
742 772 2.193127 CACACACCCTACCCCTATGAA 58.807 52.381 0.00 0.00 0.00 2.57
743 773 1.079825 ACACACACCCTACCCCTATGA 59.920 52.381 0.00 0.00 0.00 2.15
744 774 1.209504 CACACACACCCTACCCCTATG 59.790 57.143 0.00 0.00 0.00 2.23
745 775 1.580059 CACACACACCCTACCCCTAT 58.420 55.000 0.00 0.00 0.00 2.57
746 776 1.196104 GCACACACACCCTACCCCTA 61.196 60.000 0.00 0.00 0.00 3.53
747 777 2.526046 GCACACACACCCTACCCCT 61.526 63.158 0.00 0.00 0.00 4.79
748 778 2.033602 GCACACACACCCTACCCC 59.966 66.667 0.00 0.00 0.00 4.95
749 779 0.960364 CATGCACACACACCCTACCC 60.960 60.000 0.00 0.00 0.00 3.69
750 780 0.250727 ACATGCACACACACCCTACC 60.251 55.000 0.00 0.00 0.00 3.18
751 781 0.874390 CACATGCACACACACCCTAC 59.126 55.000 0.00 0.00 0.00 3.18
752 782 0.472044 ACACATGCACACACACCCTA 59.528 50.000 0.00 0.00 0.00 3.53
753 783 0.395586 AACACATGCACACACACCCT 60.396 50.000 0.00 0.00 0.00 4.34
754 784 0.030638 GAACACATGCACACACACCC 59.969 55.000 0.00 0.00 0.00 4.61
755 785 0.737804 TGAACACATGCACACACACC 59.262 50.000 0.00 0.00 0.00 4.16
756 786 2.780065 ATGAACACATGCACACACAC 57.220 45.000 0.00 0.00 0.00 3.82
757 787 2.813172 CCTATGAACACATGCACACACA 59.187 45.455 0.00 0.00 0.00 3.72
758 788 2.162208 CCCTATGAACACATGCACACAC 59.838 50.000 0.00 0.00 0.00 3.82
759 789 2.435422 CCCTATGAACACATGCACACA 58.565 47.619 0.00 0.00 0.00 3.72
760 790 1.745087 CCCCTATGAACACATGCACAC 59.255 52.381 0.00 0.00 0.00 3.82
761 791 1.354031 ACCCCTATGAACACATGCACA 59.646 47.619 0.00 0.00 0.00 4.57
762 792 1.745087 CACCCCTATGAACACATGCAC 59.255 52.381 0.00 0.00 0.00 4.57
763 793 1.632920 TCACCCCTATGAACACATGCA 59.367 47.619 0.00 0.00 0.00 3.96
764 794 2.292267 CTCACCCCTATGAACACATGC 58.708 52.381 0.00 0.00 0.00 4.06
765 795 2.292267 GCTCACCCCTATGAACACATG 58.708 52.381 0.00 0.00 0.00 3.21
766 796 1.134401 CGCTCACCCCTATGAACACAT 60.134 52.381 0.00 0.00 0.00 3.21
767 797 0.249120 CGCTCACCCCTATGAACACA 59.751 55.000 0.00 0.00 0.00 3.72
768 798 0.249398 ACGCTCACCCCTATGAACAC 59.751 55.000 0.00 0.00 0.00 3.32
769 799 0.535335 GACGCTCACCCCTATGAACA 59.465 55.000 0.00 0.00 0.00 3.18
770 800 0.824759 AGACGCTCACCCCTATGAAC 59.175 55.000 0.00 0.00 0.00 3.18
771 801 0.824109 CAGACGCTCACCCCTATGAA 59.176 55.000 0.00 0.00 0.00 2.57
772 802 1.676678 GCAGACGCTCACCCCTATGA 61.677 60.000 0.00 0.00 34.30 2.15
773 803 1.227380 GCAGACGCTCACCCCTATG 60.227 63.158 0.00 0.00 34.30 2.23
774 804 2.786495 CGCAGACGCTCACCCCTAT 61.786 63.158 0.00 0.00 35.30 2.57
775 805 2.825075 TACGCAGACGCTCACCCCTA 62.825 60.000 0.00 0.00 45.53 3.53
777 807 3.077519 ATACGCAGACGCTCACCCC 62.078 63.158 0.00 0.00 45.53 4.95
778 808 1.878522 CATACGCAGACGCTCACCC 60.879 63.158 0.00 0.00 45.53 4.61
779 809 0.099968 TACATACGCAGACGCTCACC 59.900 55.000 0.00 0.00 45.53 4.02
780 810 2.121116 ATACATACGCAGACGCTCAC 57.879 50.000 0.00 0.00 45.53 3.51
781 811 2.159296 ACAATACATACGCAGACGCTCA 60.159 45.455 0.00 0.00 45.53 4.26
782 812 2.216488 CACAATACATACGCAGACGCTC 59.784 50.000 0.00 0.00 45.53 5.03
783 813 2.193447 CACAATACATACGCAGACGCT 58.807 47.619 0.00 0.00 45.53 5.07
784 814 1.924524 ACACAATACATACGCAGACGC 59.075 47.619 0.00 0.00 45.53 5.19
840 870 4.580995 TCGTGGTAGATTTGCAAAAAGGAA 59.419 37.500 17.19 0.00 0.00 3.36
842 872 4.023193 ACTCGTGGTAGATTTGCAAAAAGG 60.023 41.667 17.19 4.25 0.00 3.11
843 873 4.911610 CACTCGTGGTAGATTTGCAAAAAG 59.088 41.667 17.19 0.83 0.00 2.27
845 875 3.304391 GCACTCGTGGTAGATTTGCAAAA 60.304 43.478 17.19 0.00 32.44 2.44
846 876 2.225491 GCACTCGTGGTAGATTTGCAAA 59.775 45.455 15.44 15.44 32.44 3.68
847 877 1.804151 GCACTCGTGGTAGATTTGCAA 59.196 47.619 0.00 0.00 32.44 4.08
848 878 1.270571 TGCACTCGTGGTAGATTTGCA 60.271 47.619 0.00 0.00 36.97 4.08
858 888 2.118683 CAAATGTGTTTGCACTCGTGG 58.881 47.619 0.00 0.00 45.44 4.94
859 889 3.038017 CTCAAATGTGTTTGCACTCGTG 58.962 45.455 0.00 0.00 45.44 4.35
872 902 3.435105 TTGCGCAAGTTTCTCAAATGT 57.565 38.095 21.02 0.00 41.68 2.71
874 904 3.670055 CGATTTGCGCAAGTTTCTCAAAT 59.330 39.130 23.68 10.42 37.61 2.32
880 910 2.499896 CTCTCGATTTGCGCAAGTTTC 58.500 47.619 23.68 18.88 40.61 2.78
889 919 3.893795 GCTTCAGCTCTCGATTTGC 57.106 52.632 0.00 0.00 38.21 3.68
936 966 5.794894 AGGTTTCAGAAGACGTATGTGAAT 58.205 37.500 12.32 0.00 31.19 2.57
937 967 5.209818 AGGTTTCAGAAGACGTATGTGAA 57.790 39.130 8.72 8.72 0.00 3.18
973 1003 1.501741 GGTGCGATTTGTCATGCGT 59.498 52.632 0.00 0.00 0.00 5.24
1089 1119 3.989698 CTTGAGGATCGCCGCGTGT 62.990 63.158 13.39 2.70 38.61 4.49
1140 1170 1.201429 AGGCGATGAGGAGGTGGTTT 61.201 55.000 0.00 0.00 0.00 3.27
1603 1633 1.907739 CCATCCTCCGCCAGAGAAA 59.092 57.895 0.00 0.00 46.50 2.52
1704 1734 4.641645 TGCCCGTGGACCTGCAAG 62.642 66.667 0.00 0.00 0.00 4.01
1833 1863 2.202324 GACACGACGTCTCTCCGC 60.202 66.667 14.70 0.00 41.81 5.54
1911 1941 0.107508 CAAGCATCATGGGACCGAGT 60.108 55.000 0.00 0.00 0.00 4.18
1929 1959 0.690192 TGTTCGGCCTGATTCCTTCA 59.310 50.000 0.00 0.00 0.00 3.02
1938 1968 1.808411 ATGTGTAGTTGTTCGGCCTG 58.192 50.000 0.00 0.00 0.00 4.85
2181 2211 3.530910 CTGAGGTTGCCCGTTCCGT 62.531 63.158 0.00 0.00 35.12 4.69
2280 2310 4.684134 AACCCGCCTTGGCTGCAT 62.684 61.111 10.12 0.00 35.87 3.96
2334 2364 0.169009 GCTCAATGCGGAACTTGTCC 59.831 55.000 0.00 0.00 43.90 4.02
2370 2400 1.144716 GAGATCGACCATGCAGGCA 59.855 57.895 0.00 0.00 43.14 4.75
2403 2433 1.073444 TCCTCGGCGTCCTCTATATGT 59.927 52.381 6.85 0.00 0.00 2.29
2490 2520 4.993307 GCCTCATTGCCATGGAGA 57.007 55.556 18.40 2.33 0.00 3.71
2625 2655 2.003548 GTCCCCCATGAGCCCTCTT 61.004 63.158 0.00 0.00 0.00 2.85
2652 2682 1.762957 GTAGACCCAGGCAGCTTCATA 59.237 52.381 0.00 0.00 0.00 2.15
2770 2804 3.167485 AGCCTTTCATGCCAGAAAATGA 58.833 40.909 2.83 0.00 37.09 2.57
2782 2816 2.307098 ACTGTAGCCTGAAGCCTTTCAT 59.693 45.455 0.00 0.00 45.47 2.57
2801 2835 4.724279 ACTGAAATACCCACTTTCCACT 57.276 40.909 0.00 0.00 32.75 4.00
2802 2836 6.884836 AGATAACTGAAATACCCACTTTCCAC 59.115 38.462 0.00 0.00 32.75 4.02
2803 2837 6.884295 CAGATAACTGAAATACCCACTTTCCA 59.116 38.462 0.00 0.00 46.03 3.53
2844 2930 1.753073 CACTTCCATCCAATCCAAGCC 59.247 52.381 0.00 0.00 0.00 4.35
2845 2931 2.726821 TCACTTCCATCCAATCCAAGC 58.273 47.619 0.00 0.00 0.00 4.01
2846 2932 5.419788 TCAATTCACTTCCATCCAATCCAAG 59.580 40.000 0.00 0.00 0.00 3.61
2847 2933 5.185635 GTCAATTCACTTCCATCCAATCCAA 59.814 40.000 0.00 0.00 0.00 3.53
2848 2934 4.706476 GTCAATTCACTTCCATCCAATCCA 59.294 41.667 0.00 0.00 0.00 3.41
2851 2937 5.184479 CACTGTCAATTCACTTCCATCCAAT 59.816 40.000 0.00 0.00 0.00 3.16
2892 2978 3.209410 CTCTTACCAGTTGGATCATGCC 58.791 50.000 4.92 0.00 38.94 4.40
2915 3001 6.405278 TCGATAGCCATTGATCACTTTAGA 57.595 37.500 0.00 0.00 0.00 2.10
2920 3006 4.040829 TGGAATCGATAGCCATTGATCACT 59.959 41.667 14.10 0.00 34.65 3.41
3002 3088 8.760735 AGCATATATGAAGAGCTATTCATGAGT 58.239 33.333 35.51 25.44 46.70 3.41
3037 3123 7.998383 ACTATGTATGGCTTTCATTGTATGGAA 59.002 33.333 5.60 0.00 37.30 3.53
3038 3124 7.517320 ACTATGTATGGCTTTCATTGTATGGA 58.483 34.615 5.60 0.00 37.30 3.41
3039 3125 7.094634 GGACTATGTATGGCTTTCATTGTATGG 60.095 40.741 6.95 0.00 37.30 2.74
3040 3126 7.663081 AGGACTATGTATGGCTTTCATTGTATG 59.337 37.037 6.95 0.00 37.30 2.39
3047 3133 5.509670 CGATCAGGACTATGTATGGCTTTCA 60.510 44.000 0.00 0.00 0.00 2.69
3104 3190 3.441500 AAGAGTTTTCCCCACTCCATC 57.558 47.619 0.00 0.00 41.55 3.51
3208 3294 1.357258 GCCTGATATCATCGCCTGCG 61.357 60.000 5.72 4.92 41.35 5.18
3228 3314 2.568956 TCTCCTGGAGACCTCAAATGTG 59.431 50.000 22.30 0.00 33.35 3.21
3384 3470 0.525455 TCAAGATCGACCATGACGCG 60.525 55.000 3.53 3.53 0.00 6.01
3387 3473 4.437239 AGATTGTCAAGATCGACCATGAC 58.563 43.478 8.23 8.23 41.90 3.06
3405 3491 8.389366 CAGGAATATGAGGGGAGATTAAAGATT 58.611 37.037 0.00 0.00 0.00 2.40
3446 3532 0.313672 CCAGCTCTGATAGTCGGCTC 59.686 60.000 0.00 0.00 0.00 4.70
3451 3537 4.193826 TGAAACACCAGCTCTGATAGTC 57.806 45.455 0.00 0.00 0.00 2.59
3468 3554 7.494298 GCAGGGAAGTCTGTTTTAAATTTGAAA 59.506 33.333 4.15 4.15 37.12 2.69
3470 3556 6.097554 TGCAGGGAAGTCTGTTTTAAATTTGA 59.902 34.615 0.00 0.00 37.12 2.69
3472 3558 6.478512 TGCAGGGAAGTCTGTTTTAAATTT 57.521 33.333 0.00 0.00 37.12 1.82
3477 3563 6.323739 AGAATTTTGCAGGGAAGTCTGTTTTA 59.676 34.615 8.17 0.00 37.12 1.52
3493 3579 8.677300 TGTTCTATATGGTCTCAAGAATTTTGC 58.323 33.333 0.00 0.00 0.00 3.68
3514 3600 9.927668 CAAATTGAGGGTACATTTTAATGTTCT 57.072 29.630 12.84 8.78 46.95 3.01
3522 3608 6.930722 CAGAAAGCAAATTGAGGGTACATTTT 59.069 34.615 0.00 0.00 0.00 1.82
3603 3689 7.969536 AATTATCCATGTGCAGATGTACTAC 57.030 36.000 21.17 0.00 0.00 2.73
3615 3701 9.086336 GACCAATGTTTTGTAATTATCCATGTG 57.914 33.333 0.00 0.00 0.00 3.21
3625 3711 7.950512 TGATCAACTGACCAATGTTTTGTAAT 58.049 30.769 0.00 0.00 0.00 1.89
3636 3722 2.338809 ACCCTCTGATCAACTGACCAA 58.661 47.619 0.00 0.00 0.00 3.67
3657 3743 5.381757 TGGTACTTTTAGCTGTTGTGGAAT 58.618 37.500 0.00 0.00 0.00 3.01
3663 3749 5.920273 CCAACATTGGTACTTTTAGCTGTTG 59.080 40.000 0.00 0.00 43.43 3.33
3664 3750 6.084326 CCAACATTGGTACTTTTAGCTGTT 57.916 37.500 0.00 0.00 43.43 3.16
3690 3776 5.278463 GCAATGGAGAGACTTACTTTGCAAA 60.278 40.000 12.14 12.14 41.09 3.68
3699 3785 2.103094 CGATGGGCAATGGAGAGACTTA 59.897 50.000 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.