Multiple sequence alignment - TraesCS2B01G587800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G587800 chr2B 100.000 8597 0 0 1 8597 774952577 774943981 0.000000e+00 15876.0
1 TraesCS2B01G587800 chr2B 85.929 1926 164 51 3555 5401 774720981 774719084 0.000000e+00 1956.0
2 TraesCS2B01G587800 chr2B 88.274 1501 118 31 6092 7559 744386297 744387772 0.000000e+00 1744.0
3 TraesCS2B01G587800 chr2B 86.255 1426 142 27 5247 6651 720805143 720806535 0.000000e+00 1498.0
4 TraesCS2B01G587800 chr2B 89.155 1042 81 15 6092 7101 774718427 774717386 0.000000e+00 1269.0
5 TraesCS2B01G587800 chr2B 87.182 1139 95 24 3555 4656 744382927 744384051 0.000000e+00 1247.0
6 TraesCS2B01G587800 chr2B 89.293 934 71 14 2606 3530 774721888 774720975 0.000000e+00 1144.0
7 TraesCS2B01G587800 chr2B 88.713 948 77 15 2596 3530 744382003 744382933 0.000000e+00 1131.0
8 TraesCS2B01G587800 chr2B 87.173 764 39 14 7098 7847 774717284 774716566 0.000000e+00 813.0
9 TraesCS2B01G587800 chr2B 84.399 641 54 22 4667 5271 744384103 744384733 9.610000e-164 588.0
10 TraesCS2B01G587800 chr2B 82.278 632 42 28 7777 8402 744387969 744388536 4.670000e-132 483.0
11 TraesCS2B01G587800 chr2B 83.045 578 34 20 7832 8400 774716549 774716027 4.700000e-127 466.0
12 TraesCS2B01G587800 chr2B 78.827 784 93 36 4482 5234 720803870 720804611 2.190000e-125 460.0
13 TraesCS2B01G587800 chr2B 80.495 364 47 11 3973 4336 720803387 720803726 3.080000e-64 257.0
14 TraesCS2B01G587800 chr2B 97.727 132 3 0 665 796 232742581 232742450 2.410000e-55 228.0
15 TraesCS2B01G587800 chr2B 86.425 221 14 7 575 795 697698612 697698816 2.410000e-55 228.0
16 TraesCS2B01G587800 chr2B 97.727 132 3 0 665 796 757064032 757064163 2.410000e-55 228.0
17 TraesCS2B01G587800 chr2B 93.750 128 8 0 7152 7279 720807253 720807380 8.810000e-45 193.0
18 TraesCS2B01G587800 chr2B 77.660 282 33 18 1192 1468 774722913 774722657 2.500000e-30 145.0
19 TraesCS2B01G587800 chr2B 88.298 94 10 1 6004 6096 744385365 744385458 2.540000e-20 111.0
20 TraesCS2B01G587800 chr2B 83.186 113 15 2 3938 4047 774376235 774376124 5.490000e-17 100.0
21 TraesCS2B01G587800 chr2B 87.143 70 6 3 8398 8466 468895455 468895522 9.250000e-10 76.8
22 TraesCS2B01G587800 chr2A 95.526 4649 143 33 2857 7471 760113755 760118372 0.000000e+00 7372.0
23 TraesCS2B01G587800 chr2A 93.983 1396 46 12 2311 3685 759873791 759872413 0.000000e+00 2078.0
24 TraesCS2B01G587800 chr2A 86.565 789 43 29 908 1652 759874648 759873879 0.000000e+00 811.0
25 TraesCS2B01G587800 chr2A 97.051 373 5 2 3681 4048 759869951 759869580 2.640000e-174 623.0
26 TraesCS2B01G587800 chr2A 89.892 277 20 5 1 274 759963720 759963449 4.940000e-92 350.0
27 TraesCS2B01G587800 chr2A 92.308 221 5 8 796 1010 759962898 759962684 3.900000e-78 303.0
28 TraesCS2B01G587800 chr2A 89.787 235 16 4 347 578 759963119 759962890 2.350000e-75 294.0
29 TraesCS2B01G587800 chr2A 99.254 134 1 0 2332 2465 108550060 108550193 8.620000e-60 243.0
30 TraesCS2B01G587800 chr2A 82.329 249 25 9 2606 2854 760113369 760113598 1.890000e-46 198.0
31 TraesCS2B01G587800 chr2A 95.122 123 6 0 796 918 759875872 759875750 2.450000e-45 195.0
32 TraesCS2B01G587800 chr2A 95.960 99 4 0 8305 8403 760118726 760118824 2.480000e-35 161.0
33 TraesCS2B01G587800 chr2A 75.466 322 51 18 1009 1317 760112456 760112762 1.950000e-26 132.0
34 TraesCS2B01G587800 chr2A 97.222 72 2 0 1930 2001 108549987 108550058 1.170000e-23 122.0
35 TraesCS2B01G587800 chr2A 82.143 140 13 8 329 468 760112149 760112276 9.120000e-20 110.0
36 TraesCS2B01G587800 chr2D 95.356 4027 105 15 4580 8597 631483655 631479702 0.000000e+00 6325.0
37 TraesCS2B01G587800 chr2D 95.163 3866 102 28 1057 4864 631798579 631802417 0.000000e+00 6024.0
38 TraesCS2B01G587800 chr2D 96.402 2251 58 8 5725 7974 631803171 631805399 0.000000e+00 3687.0
39 TraesCS2B01G587800 chr2D 94.816 2006 71 15 2606 4598 631485821 631483836 0.000000e+00 3097.0
40 TraesCS2B01G587800 chr2D 87.492 1559 157 25 5322 6865 593801759 593803294 0.000000e+00 1764.0
41 TraesCS2B01G587800 chr2D 88.239 1505 113 29 6092 7559 631241743 631240266 0.000000e+00 1740.0
42 TraesCS2B01G587800 chr2D 87.732 1133 98 25 3555 4656 631244668 631243546 0.000000e+00 1284.0
43 TraesCS2B01G587800 chr2D 89.290 943 76 14 2596 3530 631245587 631244662 0.000000e+00 1158.0
44 TraesCS2B01G587800 chr2D 94.186 688 13 4 4904 5564 631802415 631803102 0.000000e+00 1024.0
45 TraesCS2B01G587800 chr2D 90.952 641 22 11 7958 8597 631805413 631806018 0.000000e+00 830.0
46 TraesCS2B01G587800 chr2D 85.090 778 64 19 4667 5403 631243494 631242728 0.000000e+00 747.0
47 TraesCS2B01G587800 chr2D 87.797 590 45 14 3 578 631797865 631798441 0.000000e+00 665.0
48 TraesCS2B01G587800 chr2D 81.264 902 94 31 4438 5299 593800726 593801592 0.000000e+00 660.0
49 TraesCS2B01G587800 chr2D 88.750 400 32 6 2659 3055 631246526 631246137 2.170000e-130 477.0
50 TraesCS2B01G587800 chr2D 87.023 393 41 5 3138 3525 630948934 630949321 1.330000e-117 435.0
51 TraesCS2B01G587800 chr2D 91.575 273 16 5 7777 8048 631240066 631239800 3.790000e-98 370.0
52 TraesCS2B01G587800 chr2D 93.981 216 12 1 5401 5616 631242661 631242447 8.320000e-85 326.0
53 TraesCS2B01G587800 chr2D 86.735 294 18 6 8109 8402 631239704 631239432 3.010000e-79 307.0
54 TraesCS2B01G587800 chr2D 89.767 215 12 3 6882 7096 593803381 593803585 5.120000e-67 267.0
55 TraesCS2B01G587800 chr2D 75.694 432 59 30 1051 1470 631247501 631247104 3.190000e-39 174.0
56 TraesCS2B01G587800 chr2D 90.840 131 9 2 7152 7279 593803711 593803841 1.150000e-38 172.0
57 TraesCS2B01G587800 chr2D 77.692 260 28 16 281 527 631488177 631487935 1.950000e-26 132.0
58 TraesCS2B01G587800 chr2D 97.015 67 2 0 5627 5693 631803103 631803169 7.050000e-21 113.0
59 TraesCS2B01G587800 chr2D 87.629 97 11 1 6004 6100 631242438 631242343 2.540000e-20 111.0
60 TraesCS2B01G587800 chr2D 89.873 79 8 0 8517 8595 375139642 375139720 1.530000e-17 102.0
61 TraesCS2B01G587800 chr2D 93.443 61 3 1 8401 8460 316109289 316109229 1.190000e-13 89.8
62 TraesCS2B01G587800 chr4D 85.617 883 97 17 6194 7062 73386376 73387242 0.000000e+00 900.0
63 TraesCS2B01G587800 chr4D 82.027 1046 108 33 4618 5641 73384847 73385834 0.000000e+00 817.0
64 TraesCS2B01G587800 chr4D 79.360 344 47 9 4000 4343 73384330 73384649 4.040000e-53 220.0
65 TraesCS2B01G587800 chr4D 100.000 30 0 0 6158 6187 73386317 73386346 1.000000e-03 56.5
66 TraesCS2B01G587800 chr1D 85.569 887 97 19 6194 7063 20972435 20973307 0.000000e+00 900.0
67 TraesCS2B01G587800 chr1D 81.836 1046 109 34 4618 5641 20970902 20971888 0.000000e+00 804.0
68 TraesCS2B01G587800 chr1D 86.301 365 34 6 3493 3844 20969910 20970271 4.870000e-102 383.0
69 TraesCS2B01G587800 chr1D 79.360 344 47 9 4000 4343 20970385 20970704 4.040000e-53 220.0
70 TraesCS2B01G587800 chr1D 78.188 298 36 20 1009 1287 20968443 20968730 6.910000e-36 163.0
71 TraesCS2B01G587800 chr1D 93.443 61 3 1 8401 8460 40898116 40898056 1.190000e-13 89.8
72 TraesCS2B01G587800 chr1D 100.000 30 0 0 6158 6187 20972376 20972405 1.000000e-03 56.5
73 TraesCS2B01G587800 chr1B 83.089 1023 107 28 6083 7063 34324141 34325139 0.000000e+00 870.0
74 TraesCS2B01G587800 chr1B 81.913 1056 114 31 4618 5641 34322686 34323696 0.000000e+00 821.0
75 TraesCS2B01G587800 chr1B 85.476 599 68 11 2834 3429 34321082 34321664 2.650000e-169 606.0
76 TraesCS2B01G587800 chr1B 86.301 365 34 6 3493 3844 34321694 34322055 4.870000e-102 383.0
77 TraesCS2B01G587800 chr1B 96.350 137 2 3 665 800 312150951 312151085 1.120000e-53 222.0
78 TraesCS2B01G587800 chr1B 74.800 500 73 37 1009 1476 34320162 34320640 8.870000e-40 176.0
79 TraesCS2B01G587800 chr1B 97.647 85 2 0 579 663 595467555 595467471 6.950000e-31 147.0
80 TraesCS2B01G587800 chr1B 88.034 117 9 5 552 663 330060918 330061034 5.410000e-27 134.0
81 TraesCS2B01G587800 chr6A 99.265 136 1 0 2330 2465 192012918 192012783 6.670000e-61 246.0
82 TraesCS2B01G587800 chr6A 88.811 143 13 3 665 806 581583463 581583603 1.150000e-38 172.0
83 TraesCS2B01G587800 chr6A 97.260 73 2 0 1930 2002 192012989 192012917 3.260000e-24 124.0
84 TraesCS2B01G587800 chr7B 98.529 136 2 0 2330 2465 677490998 677490863 3.100000e-59 241.0
85 TraesCS2B01G587800 chr7B 98.485 132 2 0 665 796 476633138 476633007 5.190000e-57 233.0
86 TraesCS2B01G587800 chr7B 97.647 85 2 0 579 663 476632619 476632703 6.950000e-31 147.0
87 TraesCS2B01G587800 chr7B 84.028 144 19 4 665 807 682910582 682910442 1.510000e-27 135.0
88 TraesCS2B01G587800 chr7B 97.260 73 2 0 1930 2002 677491069 677490997 3.260000e-24 124.0
89 TraesCS2B01G587800 chr5B 98.529 136 2 0 2330 2465 343342833 343342968 3.100000e-59 241.0
90 TraesCS2B01G587800 chr5B 97.674 86 2 0 578 663 341063109 341063194 1.930000e-31 148.0
91 TraesCS2B01G587800 chr5B 97.647 85 2 0 579 663 608558075 608558159 6.950000e-31 147.0
92 TraesCS2B01G587800 chr5B 97.260 73 2 0 1930 2002 343342762 343342834 3.260000e-24 124.0
93 TraesCS2B01G587800 chr5B 85.393 89 8 5 8279 8362 652520215 652520303 4.280000e-13 87.9
94 TraesCS2B01G587800 chr3A 98.529 136 2 0 2330 2465 18720017 18720152 3.100000e-59 241.0
95 TraesCS2B01G587800 chr3A 97.059 136 4 0 2330 2465 189428671 189428536 6.710000e-56 230.0
96 TraesCS2B01G587800 chr3A 97.059 136 4 0 2330 2465 670995266 670995401 6.710000e-56 230.0
97 TraesCS2B01G587800 chr3A 95.890 73 3 0 1930 2002 670995195 670995267 1.520000e-22 119.0
98 TraesCS2B01G587800 chr3A 94.521 73 4 0 1930 2002 190073073 190073145 7.050000e-21 113.0
99 TraesCS2B01G587800 chr3A 93.333 60 4 0 8401 8460 22356750 22356809 1.190000e-13 89.8
100 TraesCS2B01G587800 chr3A 93.443 61 3 1 8401 8460 671914919 671914859 1.190000e-13 89.8
101 TraesCS2B01G587800 chr6B 98.473 131 2 0 665 795 407168102 407167972 1.870000e-56 231.0
102 TraesCS2B01G587800 chr6B 98.473 131 2 0 665 795 662178709 662178839 1.870000e-56 231.0
103 TraesCS2B01G587800 chr6B 97.727 132 3 0 665 796 662173928 662173797 2.410000e-55 228.0
104 TraesCS2B01G587800 chr6B 97.674 86 2 0 578 663 586008184 586008099 1.930000e-31 148.0
105 TraesCS2B01G587800 chr6B 95.890 73 3 0 1930 2002 269173983 269174055 1.520000e-22 119.0
106 TraesCS2B01G587800 chr4B 97.710 131 3 0 665 795 103892016 103891886 8.680000e-55 226.0
107 TraesCS2B01G587800 chr4B 97.710 131 3 0 665 795 104006571 104006441 8.680000e-55 226.0
108 TraesCS2B01G587800 chr4B 90.083 121 10 2 8476 8595 415025960 415025841 1.160000e-33 156.0
109 TraesCS2B01G587800 chr4B 86.861 137 15 3 8460 8595 19238957 19239091 5.380000e-32 150.0
110 TraesCS2B01G587800 chr4B 97.674 86 2 0 578 663 104136165 104136080 1.930000e-31 148.0
111 TraesCS2B01G587800 chr4B 97.674 86 2 0 578 663 518698978 518698893 1.930000e-31 148.0
112 TraesCS2B01G587800 chrUn 89.855 138 11 3 8460 8597 242043273 242043407 3.190000e-39 174.0
113 TraesCS2B01G587800 chrUn 89.855 138 11 3 8460 8597 242056375 242056509 3.190000e-39 174.0
114 TraesCS2B01G587800 chrUn 92.623 122 8 1 8476 8597 249302965 249302845 3.190000e-39 174.0
115 TraesCS2B01G587800 chr6D 91.406 128 10 1 8470 8597 49135006 49134880 3.190000e-39 174.0
116 TraesCS2B01G587800 chr1A 89.209 139 12 3 8460 8597 34701585 34701721 4.130000e-38 171.0
117 TraesCS2B01G587800 chr1A 93.443 61 3 1 8401 8460 253566812 253566752 1.190000e-13 89.8
118 TraesCS2B01G587800 chr7A 88.406 138 13 3 8460 8597 500530657 500530791 6.910000e-36 163.0
119 TraesCS2B01G587800 chr3B 88.710 124 12 2 8476 8597 696208366 696208243 5.380000e-32 150.0
120 TraesCS2B01G587800 chr3B 97.727 44 1 0 1945 1988 801588737 801588694 9.250000e-10 76.8
121 TraesCS2B01G587800 chr5A 89.535 86 8 1 8513 8597 390397746 390397661 3.280000e-19 108.0
122 TraesCS2B01G587800 chr3D 90.769 65 5 1 8397 8460 297230832 297230896 1.540000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G587800 chr2B 774943981 774952577 8596 True 15876.000000 15876 100.000000 1 8597 1 chr2B.!!$R3 8596
1 TraesCS2B01G587800 chr2B 774716027 774722913 6886 True 965.500000 1956 85.375833 1192 8400 6 chr2B.!!$R4 7208
2 TraesCS2B01G587800 chr2B 744382003 744388536 6533 False 884.000000 1744 86.524000 2596 8402 6 chr2B.!!$F5 5806
3 TraesCS2B01G587800 chr2B 720803387 720807380 3993 False 602.000000 1498 84.831750 3973 7279 4 chr2B.!!$F4 3306
4 TraesCS2B01G587800 chr2A 760112149 760118824 6675 False 1594.600000 7372 86.284800 329 8403 5 chr2A.!!$F2 8074
5 TraesCS2B01G587800 chr2A 759869580 759875872 6292 True 926.750000 2078 93.180250 796 4048 4 chr2A.!!$R1 3252
6 TraesCS2B01G587800 chr2A 759962684 759963720 1036 True 315.666667 350 90.662333 1 1010 3 chr2A.!!$R2 1009
7 TraesCS2B01G587800 chr2D 631479702 631488177 8475 True 3184.666667 6325 89.288000 281 8597 3 chr2D.!!$R3 8316
8 TraesCS2B01G587800 chr2D 631797865 631806018 8153 False 2057.166667 6024 93.585833 3 8597 6 chr2D.!!$F4 8594
9 TraesCS2B01G587800 chr2D 593800726 593803841 3115 False 715.750000 1764 87.340750 4438 7279 4 chr2D.!!$F3 2841
10 TraesCS2B01G587800 chr2D 631239432 631247501 8069 True 669.400000 1740 87.471500 1051 8402 10 chr2D.!!$R2 7351
11 TraesCS2B01G587800 chr4D 73384330 73387242 2912 False 498.375000 900 86.751000 4000 7062 4 chr4D.!!$F1 3062
12 TraesCS2B01G587800 chr1D 20968443 20973307 4864 False 421.083333 900 85.209000 1009 7063 6 chr1D.!!$F1 6054
13 TraesCS2B01G587800 chr1B 34320162 34325139 4977 False 571.200000 870 82.315800 1009 7063 5 chr1B.!!$F3 6054

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
592 874 0.247185 CAGCCGGCAAATTTGACCAT 59.753 50.000 31.54 3.42 30.46 3.55 F
1004 3355 0.530431 CTGGCCAAAAACCACACTGC 60.530 55.000 7.01 0.00 32.49 4.40 F
1783 5640 0.886490 CTTGCACAGGGTGAGGTGAC 60.886 60.000 0.00 0.00 37.18 3.67 F
2453 6328 0.031857 TGTTGATTTTGGTGCCAGCG 59.968 50.000 0.00 0.00 0.00 5.18 F
3139 7220 0.254178 GAATGCTCCTGCTCCTGGAA 59.746 55.000 0.00 0.00 40.48 3.53 F
3223 7304 0.804364 TGTTTCGCACCATGAGATGC 59.196 50.000 0.00 0.00 38.52 3.91 F
4800 11748 0.777446 ACAAGGCCACAAGTACCCAT 59.223 50.000 5.01 0.00 0.00 4.00 F
6149 15424 3.208747 TGGACCTTTTCCTCTTGTGAC 57.791 47.619 0.00 0.00 46.10 3.67 F
6487 15801 3.256631 AGCATGGTGGCTTAGAAGTTTTG 59.743 43.478 0.00 0.00 42.71 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1779 5636 0.388907 AGCATTGGCATTTGCGTCAC 60.389 50.000 14.78 0.00 43.61 3.67 R
1889 5746 0.664761 CCAGTTCACACAAGTGCAGG 59.335 55.000 0.00 0.00 45.49 4.85 R
3477 7558 0.846015 TTCTATGCATGGGTGAGGGG 59.154 55.000 10.16 0.00 0.00 4.79 R
3989 10616 0.035820 GGGCAGTACCAATTCCGACA 60.036 55.000 0.00 0.00 42.05 4.35 R
4800 11748 3.688185 GCACCGACCTCGTATCTATATCA 59.312 47.826 0.00 0.00 37.74 2.15 R
4970 11943 5.156355 CAACGATTGGGATGAAGAAAACAG 58.844 41.667 0.00 0.00 0.00 3.16 R
6628 15944 2.424601 CACCATGGCAGGTTGATTAGTG 59.575 50.000 13.04 0.00 40.77 2.74 R
7415 17159 2.146342 CAGTCAACAAGTGGCAGTAGG 58.854 52.381 0.00 0.00 32.63 3.18 R
8311 18274 0.610232 GTTGGAAGCAGGCTGGTCAT 60.610 55.000 20.86 4.93 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
239 244 8.613482 GGACTATTTCAATAGCCTAAAGTTGTC 58.387 37.037 6.49 0.00 41.62 3.18
313 320 2.335316 AAAAGAGTACACCCACGCAA 57.665 45.000 0.00 0.00 0.00 4.85
331 338 3.366719 GCAAGTCAAAAGACAGTGAAGC 58.633 45.455 0.00 0.00 0.00 3.86
332 339 3.181497 GCAAGTCAAAAGACAGTGAAGCA 60.181 43.478 0.00 0.00 0.00 3.91
333 340 4.595116 CAAGTCAAAAGACAGTGAAGCAG 58.405 43.478 0.00 0.00 0.00 4.24
334 341 3.878778 AGTCAAAAGACAGTGAAGCAGT 58.121 40.909 0.00 0.00 0.00 4.40
335 342 5.023533 AGTCAAAAGACAGTGAAGCAGTA 57.976 39.130 0.00 0.00 0.00 2.74
336 343 5.053145 AGTCAAAAGACAGTGAAGCAGTAG 58.947 41.667 0.00 0.00 0.00 2.57
337 344 3.809832 TCAAAAGACAGTGAAGCAGTAGC 59.190 43.478 0.00 0.00 42.56 3.58
338 345 3.475566 AAAGACAGTGAAGCAGTAGCA 57.524 42.857 0.00 0.00 45.49 3.49
339 346 2.447244 AGACAGTGAAGCAGTAGCAC 57.553 50.000 0.00 0.00 45.49 4.40
340 347 1.967066 AGACAGTGAAGCAGTAGCACT 59.033 47.619 0.00 0.00 45.49 4.40
389 661 2.254951 CACCCACGCACGTACGTA 59.745 61.111 22.34 0.00 46.34 3.57
406 678 1.082206 TAACCTCCCCTCCCCACTG 59.918 63.158 0.00 0.00 0.00 3.66
459 738 3.834799 GTCTCTACCCGCCACCCG 61.835 72.222 0.00 0.00 0.00 5.28
493 772 2.835431 CTCCGCGGAGACTCCCAT 60.835 66.667 45.28 0.00 44.53 4.00
521 800 3.211963 GGCCACCCATGTCATCGC 61.212 66.667 0.00 0.00 0.00 4.58
528 807 3.576356 CATGTCATCGCCCGTGCC 61.576 66.667 0.00 0.00 0.00 5.01
545 826 1.796151 CCGTGCGTGCAGATTCATT 59.204 52.632 0.00 0.00 0.00 2.57
572 854 2.579787 GTCCCAGCGACGATCACG 60.580 66.667 0.00 5.16 45.75 4.35
583 865 3.430862 GATCACGCAGCCGGCAAA 61.431 61.111 31.54 7.07 45.17 3.68
584 866 2.751436 ATCACGCAGCCGGCAAAT 60.751 55.556 31.54 4.59 45.17 2.32
585 867 2.270297 GATCACGCAGCCGGCAAATT 62.270 55.000 31.54 4.11 45.17 1.82
586 868 1.876497 ATCACGCAGCCGGCAAATTT 61.876 50.000 31.54 3.61 45.17 1.82
587 869 2.049248 ACGCAGCCGGCAAATTTG 60.049 55.556 31.54 19.09 45.17 2.32
588 870 2.257980 CGCAGCCGGCAAATTTGA 59.742 55.556 31.54 0.00 45.17 2.69
589 871 2.088178 CGCAGCCGGCAAATTTGAC 61.088 57.895 31.54 18.50 45.17 3.18
590 872 1.737735 GCAGCCGGCAAATTTGACC 60.738 57.895 31.54 19.14 43.97 4.02
591 873 1.664873 CAGCCGGCAAATTTGACCA 59.335 52.632 31.54 0.00 30.46 4.02
592 874 0.247185 CAGCCGGCAAATTTGACCAT 59.753 50.000 31.54 3.42 30.46 3.55
593 875 0.975887 AGCCGGCAAATTTGACCATT 59.024 45.000 31.54 0.00 30.46 3.16
594 876 1.347378 AGCCGGCAAATTTGACCATTT 59.653 42.857 31.54 0.00 30.46 2.32
595 877 2.150390 GCCGGCAAATTTGACCATTTT 58.850 42.857 24.80 0.00 30.46 1.82
596 878 2.095819 GCCGGCAAATTTGACCATTTTG 60.096 45.455 24.80 4.91 30.46 2.44
597 879 3.397482 CCGGCAAATTTGACCATTTTGA 58.603 40.909 22.31 0.00 33.24 2.69
598 880 3.186205 CCGGCAAATTTGACCATTTTGAC 59.814 43.478 22.31 0.00 35.48 3.18
599 881 3.186205 CGGCAAATTTGACCATTTTGACC 59.814 43.478 22.31 8.04 35.40 4.02
600 882 4.388485 GGCAAATTTGACCATTTTGACCT 58.612 39.130 22.31 0.00 33.22 3.85
601 883 5.546526 GGCAAATTTGACCATTTTGACCTA 58.453 37.500 22.31 0.00 33.22 3.08
602 884 6.172630 GGCAAATTTGACCATTTTGACCTAT 58.827 36.000 22.31 0.00 33.22 2.57
603 885 6.092533 GGCAAATTTGACCATTTTGACCTATG 59.907 38.462 22.31 0.00 33.22 2.23
604 886 6.092533 GCAAATTTGACCATTTTGACCTATGG 59.907 38.462 22.31 0.00 45.49 2.74
605 887 7.385267 CAAATTTGACCATTTTGACCTATGGA 58.615 34.615 13.08 0.00 43.25 3.41
606 888 5.975693 TTTGACCATTTTGACCTATGGAC 57.024 39.130 8.03 2.82 43.25 4.02
607 889 3.605634 TGACCATTTTGACCTATGGACG 58.394 45.455 8.03 0.00 43.25 4.79
608 890 3.262151 TGACCATTTTGACCTATGGACGA 59.738 43.478 8.03 0.00 43.25 4.20
609 891 4.258543 GACCATTTTGACCTATGGACGAA 58.741 43.478 8.03 0.00 43.25 3.85
610 892 4.658063 ACCATTTTGACCTATGGACGAAA 58.342 39.130 8.03 4.51 43.25 3.46
611 893 5.261216 ACCATTTTGACCTATGGACGAAAT 58.739 37.500 8.03 7.94 43.25 2.17
612 894 5.357032 ACCATTTTGACCTATGGACGAAATC 59.643 40.000 8.03 0.00 43.25 2.17
613 895 5.356751 CCATTTTGACCTATGGACGAAATCA 59.643 40.000 9.97 0.00 43.25 2.57
614 896 6.127758 CCATTTTGACCTATGGACGAAATCAA 60.128 38.462 9.97 0.00 43.25 2.57
615 897 7.416664 CCATTTTGACCTATGGACGAAATCAAT 60.417 37.037 9.97 0.00 43.25 2.57
616 898 7.461182 TTTTGACCTATGGACGAAATCAATT 57.539 32.000 0.00 0.00 28.85 2.32
617 899 6.677781 TTGACCTATGGACGAAATCAATTC 57.322 37.500 0.00 0.00 34.52 2.17
618 900 5.739959 TGACCTATGGACGAAATCAATTCA 58.260 37.500 0.00 0.00 37.96 2.57
619 901 5.584649 TGACCTATGGACGAAATCAATTCAC 59.415 40.000 0.00 0.00 37.96 3.18
620 902 4.570772 ACCTATGGACGAAATCAATTCACG 59.429 41.667 0.00 0.00 37.96 4.35
621 903 4.024893 CCTATGGACGAAATCAATTCACGG 60.025 45.833 0.00 0.00 37.96 4.94
622 904 3.046968 TGGACGAAATCAATTCACGGA 57.953 42.857 0.00 0.00 37.96 4.69
623 905 3.403968 TGGACGAAATCAATTCACGGAA 58.596 40.909 0.00 0.00 37.96 4.30
624 906 4.006989 TGGACGAAATCAATTCACGGAAT 58.993 39.130 0.00 0.00 37.96 3.01
625 907 4.142708 TGGACGAAATCAATTCACGGAATG 60.143 41.667 0.00 0.00 37.96 2.67
626 908 4.094294 GGACGAAATCAATTCACGGAATGA 59.906 41.667 0.00 2.27 37.96 2.57
635 917 3.313012 TTCACGGAATGAACTCATCGT 57.687 42.857 1.75 1.75 42.62 3.73
636 918 2.606108 TCACGGAATGAACTCATCGTG 58.394 47.619 19.87 19.87 46.68 4.35
638 920 3.313012 ACGGAATGAACTCATCGTGAA 57.687 42.857 5.84 0.00 36.09 3.18
639 921 3.659786 ACGGAATGAACTCATCGTGAAA 58.340 40.909 5.84 0.00 36.09 2.69
640 922 3.432252 ACGGAATGAACTCATCGTGAAAC 59.568 43.478 5.84 0.00 36.09 2.78
641 923 3.679980 CGGAATGAACTCATCGTGAAACT 59.320 43.478 0.00 0.00 35.10 2.66
642 924 4.862574 CGGAATGAACTCATCGTGAAACTA 59.137 41.667 0.00 0.00 35.10 2.24
643 925 5.520288 CGGAATGAACTCATCGTGAAACTAT 59.480 40.000 0.00 0.00 35.10 2.12
644 926 6.036083 CGGAATGAACTCATCGTGAAACTATT 59.964 38.462 0.00 0.00 35.10 1.73
645 927 7.413000 CGGAATGAACTCATCGTGAAACTATTT 60.413 37.037 0.00 0.00 35.10 1.40
646 928 7.905493 GGAATGAACTCATCGTGAAACTATTTC 59.095 37.037 0.00 0.00 36.52 2.17
647 929 7.905604 ATGAACTCATCGTGAAACTATTTCA 57.094 32.000 0.00 0.00 38.55 2.69
658 940 5.007682 TGAAACTATTTCACAGCCCTAACC 58.992 41.667 0.00 0.00 44.21 2.85
659 941 4.929146 AACTATTTCACAGCCCTAACCT 57.071 40.909 0.00 0.00 0.00 3.50
660 942 4.929146 ACTATTTCACAGCCCTAACCTT 57.071 40.909 0.00 0.00 0.00 3.50
661 943 5.256806 ACTATTTCACAGCCCTAACCTTT 57.743 39.130 0.00 0.00 0.00 3.11
662 944 5.641155 ACTATTTCACAGCCCTAACCTTTT 58.359 37.500 0.00 0.00 0.00 2.27
663 945 5.710567 ACTATTTCACAGCCCTAACCTTTTC 59.289 40.000 0.00 0.00 0.00 2.29
664 946 2.178912 TCACAGCCCTAACCTTTTCG 57.821 50.000 0.00 0.00 0.00 3.46
665 947 1.165270 CACAGCCCTAACCTTTTCGG 58.835 55.000 0.00 0.00 39.35 4.30
666 948 0.608308 ACAGCCCTAACCTTTTCGGC 60.608 55.000 0.00 0.00 40.03 5.54
667 949 1.376812 AGCCCTAACCTTTTCGGCG 60.377 57.895 0.00 0.00 44.56 6.46
668 950 3.047718 GCCCTAACCTTTTCGGCGC 62.048 63.158 0.00 0.00 35.61 6.53
669 951 1.376812 CCCTAACCTTTTCGGCGCT 60.377 57.895 7.64 0.00 35.61 5.92
670 952 1.644786 CCCTAACCTTTTCGGCGCTG 61.645 60.000 10.86 10.86 35.61 5.18
671 953 1.134694 CTAACCTTTTCGGCGCTGC 59.865 57.895 12.58 0.00 35.61 5.25
672 954 1.573829 CTAACCTTTTCGGCGCTGCA 61.574 55.000 12.58 0.00 35.61 4.41
673 955 1.847890 TAACCTTTTCGGCGCTGCAC 61.848 55.000 12.58 0.00 35.61 4.57
674 956 3.659092 CCTTTTCGGCGCTGCACA 61.659 61.111 12.58 0.00 0.00 4.57
675 957 2.127118 CTTTTCGGCGCTGCACAG 60.127 61.111 12.58 0.00 0.00 3.66
676 958 2.896801 CTTTTCGGCGCTGCACAGT 61.897 57.895 12.58 0.00 0.00 3.55
677 959 1.565156 CTTTTCGGCGCTGCACAGTA 61.565 55.000 12.58 0.00 0.00 2.74
678 960 1.565156 TTTTCGGCGCTGCACAGTAG 61.565 55.000 12.58 0.00 0.00 2.57
679 961 3.932580 TTCGGCGCTGCACAGTAGG 62.933 63.158 12.58 0.00 0.00 3.18
681 963 4.394712 GGCGCTGCACAGTAGGGT 62.395 66.667 7.64 0.00 0.00 4.34
682 964 3.121030 GCGCTGCACAGTAGGGTG 61.121 66.667 0.00 0.00 41.72 4.61
683 965 2.343758 CGCTGCACAGTAGGGTGT 59.656 61.111 0.00 0.00 40.89 4.16
685 967 1.672356 GCTGCACAGTAGGGTGTGG 60.672 63.158 6.16 0.00 46.73 4.17
686 968 1.672356 CTGCACAGTAGGGTGTGGC 60.672 63.158 6.16 0.03 46.73 5.01
687 969 2.742372 GCACAGTAGGGTGTGGCG 60.742 66.667 6.16 0.00 46.73 5.69
688 970 2.742372 CACAGTAGGGTGTGGCGC 60.742 66.667 0.00 0.00 43.56 6.53
689 971 4.016706 ACAGTAGGGTGTGGCGCC 62.017 66.667 22.73 22.73 0.00 6.53
711 993 4.627801 TGGCGGGCGCTACACAAA 62.628 61.111 7.64 0.00 41.60 2.83
712 994 3.358707 GGCGGGCGCTACACAAAA 61.359 61.111 7.64 0.00 41.60 2.44
713 995 2.640421 GCGGGCGCTACACAAAAA 59.360 55.556 7.64 0.00 38.26 1.94
714 996 1.442017 GCGGGCGCTACACAAAAAG 60.442 57.895 7.64 0.00 38.26 2.27
715 997 1.209127 CGGGCGCTACACAAAAAGG 59.791 57.895 7.64 0.00 0.00 3.11
716 998 1.512156 CGGGCGCTACACAAAAAGGT 61.512 55.000 7.64 0.00 0.00 3.50
717 999 0.671796 GGGCGCTACACAAAAAGGTT 59.328 50.000 7.64 0.00 0.00 3.50
718 1000 1.881324 GGGCGCTACACAAAAAGGTTA 59.119 47.619 7.64 0.00 0.00 2.85
719 1001 2.293955 GGGCGCTACACAAAAAGGTTAA 59.706 45.455 7.64 0.00 0.00 2.01
720 1002 3.561503 GGCGCTACACAAAAAGGTTAAG 58.438 45.455 7.64 0.00 0.00 1.85
721 1003 3.004002 GGCGCTACACAAAAAGGTTAAGT 59.996 43.478 7.64 0.00 0.00 2.24
722 1004 4.216731 GCGCTACACAAAAAGGTTAAGTC 58.783 43.478 0.00 0.00 0.00 3.01
723 1005 4.024302 GCGCTACACAAAAAGGTTAAGTCT 60.024 41.667 0.00 0.00 0.00 3.24
724 1006 5.440685 CGCTACACAAAAAGGTTAAGTCTG 58.559 41.667 0.00 0.00 0.00 3.51
725 1007 5.007332 CGCTACACAAAAAGGTTAAGTCTGT 59.993 40.000 0.00 0.00 0.00 3.41
726 1008 6.199393 GCTACACAAAAAGGTTAAGTCTGTG 58.801 40.000 0.00 0.00 38.85 3.66
727 1009 6.037830 GCTACACAAAAAGGTTAAGTCTGTGA 59.962 38.462 6.32 0.00 36.91 3.58
728 1010 6.827586 ACACAAAAAGGTTAAGTCTGTGAA 57.172 33.333 6.32 0.00 36.91 3.18
729 1011 7.222000 ACACAAAAAGGTTAAGTCTGTGAAA 57.778 32.000 6.32 0.00 36.91 2.69
730 1012 7.836842 ACACAAAAAGGTTAAGTCTGTGAAAT 58.163 30.769 6.32 0.00 36.91 2.17
731 1013 8.962679 ACACAAAAAGGTTAAGTCTGTGAAATA 58.037 29.630 6.32 0.00 36.91 1.40
732 1014 9.450807 CACAAAAAGGTTAAGTCTGTGAAATAG 57.549 33.333 0.00 0.00 35.78 1.73
733 1015 9.185680 ACAAAAAGGTTAAGTCTGTGAAATAGT 57.814 29.630 0.00 0.00 0.00 2.12
737 1019 8.974060 AAGGTTAAGTCTGTGAAATAGTTTCA 57.026 30.769 1.24 1.24 46.68 2.69
747 1029 5.917541 TGAAATAGTTTCACGGTCAGTTC 57.082 39.130 1.24 0.00 44.21 3.01
748 1030 5.361427 TGAAATAGTTTCACGGTCAGTTCA 58.639 37.500 1.24 0.00 44.21 3.18
749 1031 5.995282 TGAAATAGTTTCACGGTCAGTTCAT 59.005 36.000 1.24 0.00 44.21 2.57
750 1032 6.485313 TGAAATAGTTTCACGGTCAGTTCATT 59.515 34.615 1.24 0.00 44.21 2.57
751 1033 6.481954 AATAGTTTCACGGTCAGTTCATTC 57.518 37.500 0.00 0.00 0.00 2.67
752 1034 3.139077 AGTTTCACGGTCAGTTCATTCC 58.861 45.455 0.00 0.00 0.00 3.01
753 1035 1.790755 TTCACGGTCAGTTCATTCCG 58.209 50.000 0.00 0.00 46.98 4.30
756 1038 3.507597 CGGTCAGTTCATTCCGTGA 57.492 52.632 0.00 0.00 38.45 4.35
757 1039 1.790755 CGGTCAGTTCATTCCGTGAA 58.209 50.000 0.00 0.00 44.36 3.18
767 1049 5.621197 TTCATTCCGTGAATTGATTTCGT 57.379 34.783 0.00 0.00 41.79 3.85
768 1050 5.216566 TCATTCCGTGAATTGATTTCGTC 57.783 39.130 0.00 0.00 37.13 4.20
769 1051 4.094294 TCATTCCGTGAATTGATTTCGTCC 59.906 41.667 0.00 0.00 37.13 4.79
770 1052 3.046968 TCCGTGAATTGATTTCGTCCA 57.953 42.857 0.00 0.00 37.13 4.02
771 1053 3.605634 TCCGTGAATTGATTTCGTCCAT 58.394 40.909 0.00 0.00 37.13 3.41
772 1054 4.760878 TCCGTGAATTGATTTCGTCCATA 58.239 39.130 0.00 0.00 37.13 2.74
773 1055 4.808895 TCCGTGAATTGATTTCGTCCATAG 59.191 41.667 0.00 0.00 37.13 2.23
774 1056 4.024893 CCGTGAATTGATTTCGTCCATAGG 60.025 45.833 0.00 0.00 37.13 2.57
775 1057 4.570772 CGTGAATTGATTTCGTCCATAGGT 59.429 41.667 0.00 0.00 37.13 3.08
776 1058 5.276868 CGTGAATTGATTTCGTCCATAGGTC 60.277 44.000 0.00 0.00 37.13 3.85
777 1059 5.584649 GTGAATTGATTTCGTCCATAGGTCA 59.415 40.000 0.00 0.00 37.13 4.02
778 1060 6.093495 GTGAATTGATTTCGTCCATAGGTCAA 59.907 38.462 0.00 0.00 37.13 3.18
779 1061 6.657117 TGAATTGATTTCGTCCATAGGTCAAA 59.343 34.615 0.00 0.00 37.13 2.69
780 1062 7.175816 TGAATTGATTTCGTCCATAGGTCAAAA 59.824 33.333 0.00 0.00 37.13 2.44
781 1063 7.645058 ATTGATTTCGTCCATAGGTCAAAAT 57.355 32.000 0.00 0.00 0.00 1.82
782 1064 6.435430 TGATTTCGTCCATAGGTCAAAATG 57.565 37.500 0.00 0.00 0.00 2.32
783 1065 5.356751 TGATTTCGTCCATAGGTCAAAATGG 59.643 40.000 0.00 0.00 43.44 3.16
784 1066 3.992943 TCGTCCATAGGTCAAAATGGT 57.007 42.857 1.56 0.00 42.77 3.55
785 1067 3.869065 TCGTCCATAGGTCAAAATGGTC 58.131 45.455 1.56 0.00 42.77 4.02
786 1068 3.262151 TCGTCCATAGGTCAAAATGGTCA 59.738 43.478 1.56 0.00 42.77 4.02
787 1069 4.006989 CGTCCATAGGTCAAAATGGTCAA 58.993 43.478 1.56 0.00 42.77 3.18
788 1070 4.457603 CGTCCATAGGTCAAAATGGTCAAA 59.542 41.667 1.56 0.00 42.77 2.69
789 1071 5.125417 CGTCCATAGGTCAAAATGGTCAAAT 59.875 40.000 1.56 0.00 42.77 2.32
790 1072 6.350110 CGTCCATAGGTCAAAATGGTCAAATT 60.350 38.462 1.56 0.00 42.77 1.82
791 1073 7.386059 GTCCATAGGTCAAAATGGTCAAATTT 58.614 34.615 1.56 0.00 42.77 1.82
792 1074 7.331687 GTCCATAGGTCAAAATGGTCAAATTTG 59.668 37.037 12.15 12.15 42.77 2.32
793 1075 6.092533 CCATAGGTCAAAATGGTCAAATTTGC 59.907 38.462 13.54 8.47 38.28 3.68
794 1076 4.388485 AGGTCAAAATGGTCAAATTTGCC 58.612 39.130 13.54 16.80 34.77 4.52
918 1228 4.363990 CGTGCACCGAGTCCAGCT 62.364 66.667 12.15 0.00 39.56 4.24
919 1229 2.433318 GTGCACCGAGTCCAGCTC 60.433 66.667 5.22 0.00 40.77 4.09
921 1231 3.695606 GCACCGAGTCCAGCTCCA 61.696 66.667 0.00 0.00 41.10 3.86
928 2350 3.866582 GTCCAGCTCCATCCCCCG 61.867 72.222 0.00 0.00 0.00 5.73
971 2394 3.191539 CAAAGCGAGCGAGGGAGC 61.192 66.667 0.00 0.00 37.41 4.70
998 3349 2.806009 GCTGGCTGGCCAAAAACCA 61.806 57.895 15.47 11.52 46.63 3.67
1004 3355 0.530431 CTGGCCAAAAACCACACTGC 60.530 55.000 7.01 0.00 32.49 4.40
1458 5119 2.175811 GTGCCGCATTGTTCCGTC 59.824 61.111 0.00 0.00 0.00 4.79
1491 5152 2.353605 CCGGGTTATGTTTGCATTTGCT 60.354 45.455 3.94 0.00 42.66 3.91
1492 5153 3.119316 CCGGGTTATGTTTGCATTTGCTA 60.119 43.478 3.94 0.00 42.66 3.49
1536 5374 2.418368 TCCTTTCTGCACTTGTGTGT 57.582 45.000 2.61 0.00 45.44 3.72
1568 5409 6.591935 TGATGGTGGGTCATCTTATTCTTAC 58.408 40.000 6.43 0.00 42.82 2.34
1586 5431 8.713708 ATTCTTACTATGCTGTATGTAGACCT 57.286 34.615 0.00 0.00 0.00 3.85
1681 5535 6.978659 TGTACACAGTGATTATTCTCCGAATC 59.021 38.462 7.81 0.00 33.48 2.52
1727 5584 2.031420 GTCTTGTGGACCGTTAAAAGGC 60.031 50.000 0.00 0.00 38.93 4.35
1731 5588 1.883926 GTGGACCGTTAAAAGGCACAT 59.116 47.619 0.00 0.00 0.00 3.21
1762 5619 9.129209 GTTATTCAGAATTTGGTTAGAACAAGC 57.871 33.333 0.00 0.00 0.00 4.01
1783 5640 0.886490 CTTGCACAGGGTGAGGTGAC 60.886 60.000 0.00 0.00 37.18 3.67
1888 5745 4.220602 AGCGCAATTTAATTTTCCTCCTGT 59.779 37.500 11.47 0.00 0.00 4.00
1889 5746 4.562789 GCGCAATTTAATTTTCCTCCTGTC 59.437 41.667 0.30 0.00 0.00 3.51
1890 5747 5.102313 CGCAATTTAATTTTCCTCCTGTCC 58.898 41.667 0.00 0.00 0.00 4.02
1891 5748 5.105756 CGCAATTTAATTTTCCTCCTGTCCT 60.106 40.000 0.00 0.00 0.00 3.85
1892 5749 6.101997 GCAATTTAATTTTCCTCCTGTCCTG 58.898 40.000 0.00 0.00 0.00 3.86
1903 5760 0.179048 CCTGTCCTGCACTTGTGTGA 60.179 55.000 2.61 0.00 46.55 3.58
1907 5764 1.331756 GTCCTGCACTTGTGTGAACTG 59.668 52.381 2.61 0.00 46.55 3.16
1920 5777 4.681978 AACTGGTCTGACGGCGGC 62.682 66.667 13.24 9.67 0.00 6.53
1951 5808 5.047660 TGTTGCCATGGTTACCTTGTTAATC 60.048 40.000 14.67 4.06 0.00 1.75
1977 5834 9.809096 CTTAGTGTCAGTGTTCATATTAGATGT 57.191 33.333 0.00 0.00 0.00 3.06
2110 5967 5.815740 GGGTACATGTTATGACTTCACGATT 59.184 40.000 2.30 0.00 0.00 3.34
2184 6041 1.092921 TGTGCCCAAGACGTGAACAC 61.093 55.000 0.00 6.74 34.92 3.32
2185 6042 0.814010 GTGCCCAAGACGTGAACACT 60.814 55.000 0.00 0.00 32.86 3.55
2186 6043 0.813610 TGCCCAAGACGTGAACACTG 60.814 55.000 0.00 0.39 0.00 3.66
2187 6044 0.531974 GCCCAAGACGTGAACACTGA 60.532 55.000 0.00 0.00 0.00 3.41
2189 6046 1.472552 CCCAAGACGTGAACACTGACA 60.473 52.381 0.00 0.00 0.00 3.58
2190 6047 1.593006 CCAAGACGTGAACACTGACAC 59.407 52.381 0.00 0.00 0.00 3.67
2305 6176 3.259374 ACAAGATGAGTGGAGTAGTGTGG 59.741 47.826 0.00 0.00 0.00 4.17
2322 6193 3.692593 GTGTGGTTCGGGTTATATTTGCT 59.307 43.478 0.00 0.00 0.00 3.91
2367 6242 6.927416 TGTTAGCATGATTTTCTTTCTGCAT 58.073 32.000 0.00 0.00 32.18 3.96
2433 6308 3.537793 TGCGCTGTATGTAGAGTATCG 57.462 47.619 9.73 0.00 42.67 2.92
2453 6328 0.031857 TGTTGATTTTGGTGCCAGCG 59.968 50.000 0.00 0.00 0.00 5.18
2553 6437 2.221055 GTGCGACTGTGGACTGTTTAAG 59.779 50.000 0.00 0.00 0.00 1.85
2618 6515 1.661112 GCTTTACACGATCAGAGCACC 59.339 52.381 0.00 0.00 0.00 5.01
2640 6545 9.255304 GCACCATTTTCTTTTGTCAAGTTTATA 57.745 29.630 0.00 0.00 0.00 0.98
2858 6930 1.276421 TCCCTGCTTGACTTAGTGAGC 59.724 52.381 9.53 9.53 35.74 4.26
2859 6931 1.354040 CCTGCTTGACTTAGTGAGCG 58.646 55.000 11.13 7.21 37.94 5.03
2860 6932 1.067565 CCTGCTTGACTTAGTGAGCGA 60.068 52.381 11.13 2.81 37.94 4.93
2861 6933 2.257894 CTGCTTGACTTAGTGAGCGAG 58.742 52.381 11.13 7.27 37.94 5.03
2984 7062 5.070685 GTGTTCACTTTGGGAGAAAGGTAT 58.929 41.667 0.00 0.00 0.00 2.73
3139 7220 0.254178 GAATGCTCCTGCTCCTGGAA 59.746 55.000 0.00 0.00 40.48 3.53
3168 7249 6.319715 AGGTCTTTCTCTAACTCTTCCTTCT 58.680 40.000 0.00 0.00 0.00 2.85
3169 7250 6.785466 AGGTCTTTCTCTAACTCTTCCTTCTT 59.215 38.462 0.00 0.00 0.00 2.52
3170 7251 7.291416 AGGTCTTTCTCTAACTCTTCCTTCTTT 59.709 37.037 0.00 0.00 0.00 2.52
3171 7252 7.934665 GGTCTTTCTCTAACTCTTCCTTCTTTT 59.065 37.037 0.00 0.00 0.00 2.27
3223 7304 0.804364 TGTTTCGCACCATGAGATGC 59.196 50.000 0.00 0.00 38.52 3.91
3249 7330 3.802722 TTGTGTTGTTGTGCTTTTTGC 57.197 38.095 0.00 0.00 43.25 3.68
3433 7514 2.393764 CTCACCCACGCAATTTGTTTC 58.606 47.619 0.00 0.00 0.00 2.78
3477 7558 2.969950 TGTAGGACACTATGGGTATGGC 59.030 50.000 0.00 0.00 0.00 4.40
3478 7559 1.435256 AGGACACTATGGGTATGGCC 58.565 55.000 0.00 0.00 42.42 5.36
3487 7568 2.694616 GGTATGGCCCCTCACCCA 60.695 66.667 0.00 0.00 35.21 4.51
3489 7570 1.151450 GTATGGCCCCTCACCCATG 59.849 63.158 0.00 0.00 41.71 3.66
3490 7571 2.766925 TATGGCCCCTCACCCATGC 61.767 63.158 0.00 0.00 41.71 4.06
3903 10497 6.431198 TTTATTTTGTCGGCTACTTGGATC 57.569 37.500 0.00 0.00 0.00 3.36
3989 10616 1.966451 GCAGCCTAACGCCACTGTT 60.966 57.895 0.00 0.00 38.78 3.16
4472 11156 3.412386 GTGTGTGAGCTCCCAGTTTAAT 58.588 45.455 12.15 0.00 0.00 1.40
4564 11258 8.612619 TCTAGTTTTGTCACAATTCTTTGAGTC 58.387 33.333 0.00 0.00 36.64 3.36
4572 11267 7.041576 TGTCACAATTCTTTGAGTCTCATCAAG 60.042 37.037 2.68 5.70 40.16 3.02
4800 11748 0.777446 ACAAGGCCACAAGTACCCAT 59.223 50.000 5.01 0.00 0.00 4.00
4964 11937 7.345192 GTTTGGATGTATGTATTCAGCTTACG 58.655 38.462 0.00 0.00 0.00 3.18
4970 11943 7.402811 TGTATGTATTCAGCTTACGTTATGC 57.597 36.000 0.00 0.00 0.00 3.14
5018 11992 8.525316 TGGTATTCGTTCATTTACTCTGAAGTA 58.475 33.333 0.00 0.00 36.92 2.24
5298 13034 9.169592 ACATTTTGTACCAGTATTATGTACACC 57.830 33.333 0.00 0.00 43.14 4.16
5299 13035 8.617809 CATTTTGTACCAGTATTATGTACACCC 58.382 37.037 0.00 0.00 43.14 4.61
5300 13036 7.499200 TTTGTACCAGTATTATGTACACCCT 57.501 36.000 0.00 0.00 43.14 4.34
5301 13037 6.474140 TGTACCAGTATTATGTACACCCTG 57.526 41.667 0.00 0.05 39.75 4.45
5302 13038 5.364446 TGTACCAGTATTATGTACACCCTGG 59.636 44.000 18.94 18.94 39.75 4.45
5303 13039 4.368067 ACCAGTATTATGTACACCCTGGT 58.632 43.478 19.85 19.85 44.70 4.00
5304 13040 4.407945 ACCAGTATTATGTACACCCTGGTC 59.592 45.833 19.85 2.55 46.06 4.02
5305 13041 4.202326 CCAGTATTATGTACACCCTGGTCC 60.202 50.000 15.02 0.00 34.63 4.46
5306 13042 4.654262 CAGTATTATGTACACCCTGGTCCT 59.346 45.833 0.00 0.00 0.00 3.85
5307 13043 4.900054 AGTATTATGTACACCCTGGTCCTC 59.100 45.833 0.00 0.00 0.00 3.71
5308 13044 3.484953 TTATGTACACCCTGGTCCTCT 57.515 47.619 0.00 0.00 0.00 3.69
5329 13221 5.152934 TCTCCCATGGTACTATAGTTTCCC 58.847 45.833 11.40 9.50 0.00 3.97
5668 13757 4.710324 TCCTGGTCATACTTTTTGTTCGT 58.290 39.130 0.00 0.00 0.00 3.85
5838 13931 5.437060 AGCTCTTGAGAACAAACTACCAAA 58.563 37.500 1.30 0.00 35.49 3.28
6149 15424 3.208747 TGGACCTTTTCCTCTTGTGAC 57.791 47.619 0.00 0.00 46.10 3.67
6487 15801 3.256631 AGCATGGTGGCTTAGAAGTTTTG 59.743 43.478 0.00 0.00 42.71 2.44
6628 15944 5.705902 ACCGGATTAATATTATTTTGCGGC 58.294 37.500 22.17 0.00 0.00 6.53
7102 16777 5.200454 GCAAGCATGAACGTCATATACTTG 58.800 41.667 19.31 19.31 40.55 3.16
7312 17052 3.604875 ATGCTCTTTTGGCTTGGATTG 57.395 42.857 0.00 0.00 0.00 2.67
7465 17210 3.896888 AGAGGATTTGGTGTGAAAATGCA 59.103 39.130 0.00 0.00 37.69 3.96
7505 17250 6.128391 TGACTCGCATCACAAGTTTTATTACC 60.128 38.462 0.00 0.00 0.00 2.85
7629 17401 5.003692 TCTACTCTCTGAACATGCATGAC 57.996 43.478 32.75 23.52 0.00 3.06
7842 17684 5.059161 TCAGAAGAATGTGACAAACTCCTG 58.941 41.667 0.00 0.00 0.00 3.86
7892 17734 2.541466 CCAGGGACAGACTCTAGGTTT 58.459 52.381 0.00 0.00 0.00 3.27
7912 17754 3.788227 TGAAACAGGATGCCTACAAGT 57.212 42.857 0.00 0.00 42.53 3.16
8311 18274 1.803453 AAGGGCTTGAGATTGGGCCA 61.803 55.000 0.00 0.00 46.29 5.36
8448 18420 5.642063 CGGTAGGTATTGTGTGAGAACAATT 59.358 40.000 7.77 0.00 46.19 2.32
8449 18421 6.814644 CGGTAGGTATTGTGTGAGAACAATTA 59.185 38.462 7.77 0.00 46.19 1.40
8450 18422 7.494625 CGGTAGGTATTGTGTGAGAACAATTAT 59.505 37.037 7.77 0.00 46.19 1.28
8451 18423 8.612619 GGTAGGTATTGTGTGAGAACAATTATG 58.387 37.037 7.77 0.00 46.19 1.90
8452 18424 9.378551 GTAGGTATTGTGTGAGAACAATTATGA 57.621 33.333 7.77 0.00 46.19 2.15
8453 18425 8.862325 AGGTATTGTGTGAGAACAATTATGAA 57.138 30.769 7.77 0.00 46.19 2.57
8454 18426 9.466497 AGGTATTGTGTGAGAACAATTATGAAT 57.534 29.630 7.77 0.00 46.19 2.57
8462 18434 9.571810 TGTGAGAACAATTATGAATATTGTTGC 57.428 29.630 16.08 9.86 45.21 4.17
8463 18435 9.793252 GTGAGAACAATTATGAATATTGTTGCT 57.207 29.630 16.08 12.79 45.21 3.91
8523 18495 8.786826 ACCGAAGTGAATGATTTGTCTTTATA 57.213 30.769 0.00 0.00 0.00 0.98
8564 18536 6.919115 ACGAAGTTTTGTTAAGTTTTGTGTGT 59.081 30.769 0.00 0.00 37.78 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 105 0.106116 ATGGGACGGAGGGAGTAGAC 60.106 60.000 0.00 0.00 0.00 2.59
178 182 8.287439 TCACAAACTTAATTCCACTCAAAAGA 57.713 30.769 0.00 0.00 0.00 2.52
298 303 0.032952 TGACTTGCGTGGGTGTACTC 59.967 55.000 0.00 0.00 0.00 2.59
313 320 6.479353 GCTACTGCTTCACTGTCTTTTGACT 61.479 44.000 0.00 0.00 42.00 3.41
331 338 2.331032 GCTGCTGCTACAGTGCTACTG 61.331 57.143 8.53 12.81 43.03 2.74
332 339 0.108424 GCTGCTGCTACAGTGCTACT 60.108 55.000 8.53 0.00 39.96 2.57
333 340 2.378028 GCTGCTGCTACAGTGCTAC 58.622 57.895 8.53 0.00 39.96 3.58
334 341 4.919653 GCTGCTGCTACAGTGCTA 57.080 55.556 8.53 0.00 39.96 3.49
386 658 2.039951 TGGGGAGGGGAGGTTACG 59.960 66.667 0.00 0.00 0.00 3.18
387 659 1.082392 AGTGGGGAGGGGAGGTTAC 59.918 63.158 0.00 0.00 0.00 2.50
388 660 1.082206 CAGTGGGGAGGGGAGGTTA 59.918 63.158 0.00 0.00 0.00 2.85
389 661 2.204151 CAGTGGGGAGGGGAGGTT 60.204 66.667 0.00 0.00 0.00 3.50
406 678 3.432588 CAGCAGCAGCAGAGTGGC 61.433 66.667 3.17 0.00 45.49 5.01
459 738 2.543238 CGGAGAAATACTACTGGTCGCC 60.543 54.545 0.00 0.00 0.00 5.54
528 807 0.521867 CCAATGAATCTGCACGCACG 60.522 55.000 0.00 0.00 0.00 5.34
529 808 0.799534 GCCAATGAATCTGCACGCAC 60.800 55.000 0.00 0.00 0.00 5.34
530 809 1.507630 GCCAATGAATCTGCACGCA 59.492 52.632 0.00 0.00 0.00 5.24
531 810 1.226773 GGCCAATGAATCTGCACGC 60.227 57.895 0.00 0.00 0.00 5.34
532 811 1.434696 GGGCCAATGAATCTGCACG 59.565 57.895 4.39 0.00 0.00 5.34
534 813 0.971959 GTGGGGCCAATGAATCTGCA 60.972 55.000 4.39 0.00 0.00 4.41
535 814 1.679559 GGTGGGGCCAATGAATCTGC 61.680 60.000 4.39 0.00 37.17 4.26
536 815 1.386525 CGGTGGGGCCAATGAATCTG 61.387 60.000 4.39 0.00 36.97 2.90
538 817 1.379843 ACGGTGGGGCCAATGAATC 60.380 57.895 4.39 0.00 36.97 2.52
540 819 2.034999 GACGGTGGGGCCAATGAA 59.965 61.111 4.39 0.00 36.97 2.57
568 850 2.560119 AAATTTGCCGGCTGCGTGA 61.560 52.632 29.70 1.94 45.60 4.35
569 851 2.049248 AAATTTGCCGGCTGCGTG 60.049 55.556 29.70 0.00 45.60 5.34
570 852 2.049248 CAAATTTGCCGGCTGCGT 60.049 55.556 29.70 7.80 45.60 5.24
571 853 2.088178 GTCAAATTTGCCGGCTGCG 61.088 57.895 29.70 10.15 45.60 5.18
572 854 1.737735 GGTCAAATTTGCCGGCTGC 60.738 57.895 29.70 12.49 41.77 5.25
573 855 0.247185 ATGGTCAAATTTGCCGGCTG 59.753 50.000 29.70 17.49 0.00 4.85
574 856 0.975887 AATGGTCAAATTTGCCGGCT 59.024 45.000 29.70 3.84 0.00 5.52
575 857 1.807139 AAATGGTCAAATTTGCCGGC 58.193 45.000 22.73 22.73 0.00 6.13
576 858 3.186205 GTCAAAATGGTCAAATTTGCCGG 59.814 43.478 13.54 0.00 34.77 6.13
577 859 3.186205 GGTCAAAATGGTCAAATTTGCCG 59.814 43.478 13.54 5.50 34.77 5.69
578 860 4.388485 AGGTCAAAATGGTCAAATTTGCC 58.612 39.130 13.54 16.80 34.77 4.52
579 861 6.092533 CCATAGGTCAAAATGGTCAAATTTGC 59.907 38.462 13.54 8.47 38.28 3.68
580 862 7.331687 GTCCATAGGTCAAAATGGTCAAATTTG 59.668 37.037 12.15 12.15 42.77 2.32
581 863 7.386059 GTCCATAGGTCAAAATGGTCAAATTT 58.614 34.615 1.56 0.00 42.77 1.82
582 864 6.350110 CGTCCATAGGTCAAAATGGTCAAATT 60.350 38.462 1.56 0.00 42.77 1.82
583 865 5.125417 CGTCCATAGGTCAAAATGGTCAAAT 59.875 40.000 1.56 0.00 42.77 2.32
584 866 4.457603 CGTCCATAGGTCAAAATGGTCAAA 59.542 41.667 1.56 0.00 42.77 2.69
585 867 4.006989 CGTCCATAGGTCAAAATGGTCAA 58.993 43.478 1.56 0.00 42.77 3.18
586 868 3.262151 TCGTCCATAGGTCAAAATGGTCA 59.738 43.478 1.56 0.00 42.77 4.02
587 869 3.869065 TCGTCCATAGGTCAAAATGGTC 58.131 45.455 1.56 0.00 42.77 4.02
588 870 3.992943 TCGTCCATAGGTCAAAATGGT 57.007 42.857 1.56 0.00 42.77 3.55
589 871 5.356751 TGATTTCGTCCATAGGTCAAAATGG 59.643 40.000 0.00 0.00 43.44 3.16
590 872 6.435430 TGATTTCGTCCATAGGTCAAAATG 57.565 37.500 0.00 0.00 0.00 2.32
591 873 7.645058 ATTGATTTCGTCCATAGGTCAAAAT 57.355 32.000 0.00 0.00 0.00 1.82
592 874 7.175816 TGAATTGATTTCGTCCATAGGTCAAAA 59.824 33.333 0.00 0.00 37.13 2.44
593 875 6.657117 TGAATTGATTTCGTCCATAGGTCAAA 59.343 34.615 0.00 0.00 37.13 2.69
594 876 6.093495 GTGAATTGATTTCGTCCATAGGTCAA 59.907 38.462 0.00 0.00 37.13 3.18
595 877 5.584649 GTGAATTGATTTCGTCCATAGGTCA 59.415 40.000 0.00 0.00 37.13 4.02
596 878 5.276868 CGTGAATTGATTTCGTCCATAGGTC 60.277 44.000 0.00 0.00 37.13 3.85
597 879 4.570772 CGTGAATTGATTTCGTCCATAGGT 59.429 41.667 0.00 0.00 37.13 3.08
598 880 4.024893 CCGTGAATTGATTTCGTCCATAGG 60.025 45.833 0.00 0.00 37.13 2.57
599 881 4.808895 TCCGTGAATTGATTTCGTCCATAG 59.191 41.667 0.00 0.00 37.13 2.23
600 882 4.760878 TCCGTGAATTGATTTCGTCCATA 58.239 39.130 0.00 0.00 37.13 2.74
601 883 3.605634 TCCGTGAATTGATTTCGTCCAT 58.394 40.909 0.00 0.00 37.13 3.41
602 884 3.046968 TCCGTGAATTGATTTCGTCCA 57.953 42.857 0.00 0.00 37.13 4.02
603 885 4.094294 TCATTCCGTGAATTGATTTCGTCC 59.906 41.667 0.00 0.00 37.13 4.79
604 886 5.216566 TCATTCCGTGAATTGATTTCGTC 57.783 39.130 0.00 0.00 37.13 4.20
605 887 5.621197 TTCATTCCGTGAATTGATTTCGT 57.379 34.783 0.00 0.00 41.79 3.85
615 897 3.313012 ACGATGAGTTCATTCCGTGAA 57.687 42.857 7.72 0.00 44.36 3.18
617 899 2.606108 TCACGATGAGTTCATTCCGTG 58.394 47.619 21.04 21.04 46.68 4.94
618 900 3.313012 TTCACGATGAGTTCATTCCGT 57.687 42.857 0.00 3.80 37.30 4.69
619 901 3.679980 AGTTTCACGATGAGTTCATTCCG 59.320 43.478 0.00 0.00 36.57 4.30
620 902 6.910536 ATAGTTTCACGATGAGTTCATTCC 57.089 37.500 0.00 0.00 36.57 3.01
621 903 8.443160 TGAAATAGTTTCACGATGAGTTCATTC 58.557 33.333 1.24 0.00 44.21 2.67
622 904 8.322906 TGAAATAGTTTCACGATGAGTTCATT 57.677 30.769 1.24 0.00 44.21 2.57
623 905 7.905604 TGAAATAGTTTCACGATGAGTTCAT 57.094 32.000 1.24 0.00 44.21 2.57
635 917 5.007682 GGTTAGGGCTGTGAAATAGTTTCA 58.992 41.667 1.24 1.24 46.68 2.69
636 918 5.254115 AGGTTAGGGCTGTGAAATAGTTTC 58.746 41.667 0.00 0.00 40.08 2.78
637 919 5.256806 AGGTTAGGGCTGTGAAATAGTTT 57.743 39.130 0.00 0.00 0.00 2.66
638 920 4.929146 AGGTTAGGGCTGTGAAATAGTT 57.071 40.909 0.00 0.00 0.00 2.24
639 921 4.929146 AAGGTTAGGGCTGTGAAATAGT 57.071 40.909 0.00 0.00 0.00 2.12
640 922 5.163754 CGAAAAGGTTAGGGCTGTGAAATAG 60.164 44.000 0.00 0.00 0.00 1.73
641 923 4.698304 CGAAAAGGTTAGGGCTGTGAAATA 59.302 41.667 0.00 0.00 0.00 1.40
642 924 3.506067 CGAAAAGGTTAGGGCTGTGAAAT 59.494 43.478 0.00 0.00 0.00 2.17
643 925 2.882137 CGAAAAGGTTAGGGCTGTGAAA 59.118 45.455 0.00 0.00 0.00 2.69
644 926 2.500229 CGAAAAGGTTAGGGCTGTGAA 58.500 47.619 0.00 0.00 0.00 3.18
645 927 1.271163 CCGAAAAGGTTAGGGCTGTGA 60.271 52.381 0.00 0.00 34.51 3.58
646 928 1.165270 CCGAAAAGGTTAGGGCTGTG 58.835 55.000 0.00 0.00 34.51 3.66
647 929 0.608308 GCCGAAAAGGTTAGGGCTGT 60.608 55.000 0.00 0.00 43.70 4.40
648 930 1.644786 CGCCGAAAAGGTTAGGGCTG 61.645 60.000 0.00 0.00 43.70 4.85
649 931 1.376812 CGCCGAAAAGGTTAGGGCT 60.377 57.895 0.00 0.00 43.70 5.19
650 932 3.047718 GCGCCGAAAAGGTTAGGGC 62.048 63.158 0.00 0.00 43.70 5.19
651 933 1.376812 AGCGCCGAAAAGGTTAGGG 60.377 57.895 2.29 0.00 43.70 3.53
652 934 1.794222 CAGCGCCGAAAAGGTTAGG 59.206 57.895 2.29 0.00 43.70 2.69
653 935 1.134694 GCAGCGCCGAAAAGGTTAG 59.865 57.895 2.29 0.00 43.70 2.34
654 936 1.598407 TGCAGCGCCGAAAAGGTTA 60.598 52.632 2.29 0.00 43.70 2.85
655 937 2.904866 TGCAGCGCCGAAAAGGTT 60.905 55.556 2.29 0.00 43.70 3.50
656 938 3.660111 GTGCAGCGCCGAAAAGGT 61.660 61.111 2.29 0.00 43.70 3.50
657 939 3.599792 CTGTGCAGCGCCGAAAAGG 62.600 63.158 2.29 0.00 44.97 3.11
658 940 1.565156 TACTGTGCAGCGCCGAAAAG 61.565 55.000 2.29 0.00 0.00 2.27
659 941 1.565156 CTACTGTGCAGCGCCGAAAA 61.565 55.000 2.29 0.00 0.00 2.29
660 942 2.027073 CTACTGTGCAGCGCCGAAA 61.027 57.895 2.29 0.00 0.00 3.46
661 943 2.432456 CTACTGTGCAGCGCCGAA 60.432 61.111 2.29 0.00 0.00 4.30
662 944 4.435436 CCTACTGTGCAGCGCCGA 62.435 66.667 2.29 0.00 0.00 5.54
664 946 4.394712 ACCCTACTGTGCAGCGCC 62.395 66.667 2.29 0.00 0.00 6.53
665 947 3.121030 CACCCTACTGTGCAGCGC 61.121 66.667 0.00 0.00 0.00 5.92
666 948 2.029288 CACACCCTACTGTGCAGCG 61.029 63.158 0.00 0.00 39.93 5.18
667 949 1.672356 CCACACCCTACTGTGCAGC 60.672 63.158 0.00 0.00 40.33 5.25
668 950 1.672356 GCCACACCCTACTGTGCAG 60.672 63.158 0.00 0.00 40.33 4.41
669 951 2.429930 GCCACACCCTACTGTGCA 59.570 61.111 0.00 0.00 40.33 4.57
670 952 2.742372 CGCCACACCCTACTGTGC 60.742 66.667 0.00 0.00 40.33 4.57
671 953 2.742372 GCGCCACACCCTACTGTG 60.742 66.667 0.00 0.00 41.19 3.66
672 954 4.016706 GGCGCCACACCCTACTGT 62.017 66.667 24.80 0.00 0.00 3.55
694 976 4.627801 TTTGTGTAGCGCCCGCCA 62.628 61.111 2.29 0.00 43.17 5.69
695 977 2.796245 CTTTTTGTGTAGCGCCCGCC 62.796 60.000 2.29 0.00 43.17 6.13
696 978 1.442017 CTTTTTGTGTAGCGCCCGC 60.442 57.895 2.29 4.20 42.33 6.13
697 979 1.209127 CCTTTTTGTGTAGCGCCCG 59.791 57.895 2.29 0.00 0.00 6.13
698 980 0.671796 AACCTTTTTGTGTAGCGCCC 59.328 50.000 2.29 0.00 0.00 6.13
699 981 3.004002 ACTTAACCTTTTTGTGTAGCGCC 59.996 43.478 2.29 0.00 0.00 6.53
700 982 4.024302 AGACTTAACCTTTTTGTGTAGCGC 60.024 41.667 0.00 0.00 0.00 5.92
701 983 5.007332 ACAGACTTAACCTTTTTGTGTAGCG 59.993 40.000 0.00 0.00 0.00 4.26
702 984 6.037830 TCACAGACTTAACCTTTTTGTGTAGC 59.962 38.462 0.00 0.00 36.67 3.58
703 985 7.548196 TCACAGACTTAACCTTTTTGTGTAG 57.452 36.000 0.00 0.00 36.67 2.74
704 986 7.925043 TTCACAGACTTAACCTTTTTGTGTA 57.075 32.000 0.00 0.00 36.67 2.90
705 987 6.827586 TTCACAGACTTAACCTTTTTGTGT 57.172 33.333 0.00 0.00 36.67 3.72
706 988 9.450807 CTATTTCACAGACTTAACCTTTTTGTG 57.549 33.333 0.00 0.00 36.64 3.33
707 989 9.185680 ACTATTTCACAGACTTAACCTTTTTGT 57.814 29.630 0.00 0.00 0.00 2.83
711 993 9.403583 TGAAACTATTTCACAGACTTAACCTTT 57.596 29.630 0.00 0.00 44.21 3.11
712 994 8.974060 TGAAACTATTTCACAGACTTAACCTT 57.026 30.769 0.00 0.00 44.21 3.50
725 1007 5.361427 TGAACTGACCGTGAAACTATTTCA 58.639 37.500 0.00 0.00 46.68 2.69
726 1008 5.917541 TGAACTGACCGTGAAACTATTTC 57.082 39.130 0.00 0.00 40.08 2.17
727 1009 6.072673 GGAATGAACTGACCGTGAAACTATTT 60.073 38.462 0.00 0.00 31.75 1.40
728 1010 5.411669 GGAATGAACTGACCGTGAAACTATT 59.588 40.000 0.00 0.00 31.75 1.73
729 1011 4.935808 GGAATGAACTGACCGTGAAACTAT 59.064 41.667 0.00 0.00 31.75 2.12
730 1012 4.312443 GGAATGAACTGACCGTGAAACTA 58.688 43.478 0.00 0.00 31.75 2.24
731 1013 3.139077 GGAATGAACTGACCGTGAAACT 58.861 45.455 0.00 0.00 31.75 2.66
732 1014 2.096417 CGGAATGAACTGACCGTGAAAC 60.096 50.000 0.00 0.00 40.42 2.78
733 1015 2.139917 CGGAATGAACTGACCGTGAAA 58.860 47.619 0.00 0.00 40.42 2.69
734 1016 1.790755 CGGAATGAACTGACCGTGAA 58.209 50.000 0.00 0.00 40.42 3.18
735 1017 3.507597 CGGAATGAACTGACCGTGA 57.492 52.632 0.00 0.00 40.42 4.35
738 1020 1.790755 TTCACGGAATGAACTGACCG 58.209 50.000 0.00 0.00 42.62 4.79
739 1021 3.751175 TCAATTCACGGAATGAACTGACC 59.249 43.478 0.00 0.00 44.16 4.02
746 1028 4.094294 GGACGAAATCAATTCACGGAATGA 59.906 41.667 0.00 2.27 37.96 2.57
747 1029 4.142708 TGGACGAAATCAATTCACGGAATG 60.143 41.667 0.00 0.00 37.96 2.67
748 1030 4.006989 TGGACGAAATCAATTCACGGAAT 58.993 39.130 0.00 0.00 37.96 3.01
749 1031 3.403968 TGGACGAAATCAATTCACGGAA 58.596 40.909 0.00 0.00 37.96 4.30
750 1032 3.046968 TGGACGAAATCAATTCACGGA 57.953 42.857 0.00 0.00 37.96 4.69
751 1033 4.024893 CCTATGGACGAAATCAATTCACGG 60.025 45.833 0.00 0.00 37.96 4.94
752 1034 4.570772 ACCTATGGACGAAATCAATTCACG 59.429 41.667 0.00 0.00 37.96 4.35
753 1035 5.584649 TGACCTATGGACGAAATCAATTCAC 59.415 40.000 0.00 0.00 37.96 3.18
754 1036 5.739959 TGACCTATGGACGAAATCAATTCA 58.260 37.500 0.00 0.00 37.96 2.57
755 1037 6.677781 TTGACCTATGGACGAAATCAATTC 57.322 37.500 0.00 0.00 34.52 2.17
756 1038 7.461182 TTTTGACCTATGGACGAAATCAATT 57.539 32.000 0.00 0.00 28.85 2.32
757 1039 7.416664 CCATTTTGACCTATGGACGAAATCAAT 60.417 37.037 9.97 0.00 43.25 2.57
758 1040 6.127758 CCATTTTGACCTATGGACGAAATCAA 60.128 38.462 9.97 0.00 43.25 2.57
759 1041 5.356751 CCATTTTGACCTATGGACGAAATCA 59.643 40.000 9.97 0.00 43.25 2.57
760 1042 5.357032 ACCATTTTGACCTATGGACGAAATC 59.643 40.000 8.03 0.00 43.25 2.17
761 1043 5.261216 ACCATTTTGACCTATGGACGAAAT 58.739 37.500 8.03 7.94 43.25 2.17
762 1044 4.658063 ACCATTTTGACCTATGGACGAAA 58.342 39.130 8.03 4.51 43.25 3.46
763 1045 4.258543 GACCATTTTGACCTATGGACGAA 58.741 43.478 8.03 0.00 43.25 3.85
764 1046 3.262151 TGACCATTTTGACCTATGGACGA 59.738 43.478 8.03 0.00 43.25 4.20
765 1047 3.605634 TGACCATTTTGACCTATGGACG 58.394 45.455 8.03 0.00 43.25 4.79
766 1048 5.975693 TTTGACCATTTTGACCTATGGAC 57.024 39.130 8.03 2.82 43.25 4.02
767 1049 7.385267 CAAATTTGACCATTTTGACCTATGGA 58.615 34.615 13.08 0.00 43.25 3.41
768 1050 6.092533 GCAAATTTGACCATTTTGACCTATGG 59.907 38.462 22.31 0.00 45.49 2.74
769 1051 6.092533 GGCAAATTTGACCATTTTGACCTATG 59.907 38.462 22.31 0.00 33.22 2.23
770 1052 6.172630 GGCAAATTTGACCATTTTGACCTAT 58.827 36.000 22.31 0.00 33.22 2.57
771 1053 5.546526 GGCAAATTTGACCATTTTGACCTA 58.453 37.500 22.31 0.00 33.22 3.08
772 1054 4.388485 GGCAAATTTGACCATTTTGACCT 58.612 39.130 22.31 0.00 33.22 3.85
773 1055 4.747540 GGCAAATTTGACCATTTTGACC 57.252 40.909 22.31 5.47 33.22 4.02
918 1228 2.138179 GGTCGATTCGGGGGATGGA 61.138 63.158 6.18 0.00 0.00 3.41
919 1229 2.383245 CTGGTCGATTCGGGGGATGG 62.383 65.000 6.18 0.00 0.00 3.51
921 1231 1.075525 TCTGGTCGATTCGGGGGAT 60.076 57.895 6.18 0.00 0.00 3.85
928 2350 0.529555 GCTCTGGCTCTGGTCGATTC 60.530 60.000 0.00 0.00 35.22 2.52
971 2394 3.379445 CCAGCCAGCCAGCCAAAG 61.379 66.667 0.00 0.00 0.00 2.77
998 3349 1.980765 TCCAGAAGAAGATGGCAGTGT 59.019 47.619 0.00 0.00 36.47 3.55
1366 3887 1.512734 CGACTGCCACGTACGGTAC 60.513 63.158 21.06 8.25 0.00 3.34
1367 3888 1.911293 GACGACTGCCACGTACGGTA 61.911 60.000 21.06 0.91 43.97 4.02
1368 3889 3.259425 GACGACTGCCACGTACGGT 62.259 63.158 21.06 7.04 43.97 4.83
1424 5085 2.671888 GGCACTCGCATCATCTCATATG 59.328 50.000 0.00 0.00 41.24 1.78
1536 5374 5.965486 AGATGACCCACCATCATACTACTA 58.035 41.667 0.00 0.00 43.99 1.82
1539 5377 7.734865 AGAATAAGATGACCCACCATCATACTA 59.265 37.037 0.00 0.00 43.99 1.82
1568 5409 4.302455 GCACAGGTCTACATACAGCATAG 58.698 47.826 0.00 0.00 0.00 2.23
1660 5511 6.758416 TCTTGATTCGGAGAATAATCACTGTG 59.242 38.462 0.17 0.17 45.90 3.66
1721 5578 3.505680 TGAATAACTCGCATGTGCCTTTT 59.494 39.130 0.00 0.00 37.91 2.27
1727 5584 5.740569 CCAAATTCTGAATAACTCGCATGTG 59.259 40.000 2.85 0.00 0.00 3.21
1731 5588 5.957842 AACCAAATTCTGAATAACTCGCA 57.042 34.783 2.85 0.00 0.00 5.10
1779 5636 0.388907 AGCATTGGCATTTGCGTCAC 60.389 50.000 14.78 0.00 43.61 3.67
1783 5640 0.717224 GAACAGCATTGGCATTTGCG 59.283 50.000 14.78 12.51 43.61 4.85
1824 5681 4.402474 AGTGCCCTGCAAATTAAATAGGAC 59.598 41.667 0.00 0.00 41.47 3.85
1888 5745 1.667236 CAGTTCACACAAGTGCAGGA 58.333 50.000 0.00 0.00 45.49 3.86
1889 5746 0.664761 CCAGTTCACACAAGTGCAGG 59.335 55.000 0.00 0.00 45.49 4.85
1890 5747 1.331756 GACCAGTTCACACAAGTGCAG 59.668 52.381 0.00 0.00 45.49 4.41
1891 5748 1.065491 AGACCAGTTCACACAAGTGCA 60.065 47.619 0.00 0.00 45.49 4.57
1892 5749 1.331756 CAGACCAGTTCACACAAGTGC 59.668 52.381 0.00 0.00 45.49 4.40
1903 5760 4.681978 GCCGCCGTCAGACCAGTT 62.682 66.667 0.00 0.00 0.00 3.16
1907 5764 4.148825 ATGAGCCGCCGTCAGACC 62.149 66.667 0.00 0.00 0.00 3.85
1951 5808 9.809096 ACATCTAATATGAACACTGACACTAAG 57.191 33.333 0.00 0.00 0.00 2.18
2021 5878 1.732941 AGACCGCAATCGCACAATTA 58.267 45.000 0.00 0.00 38.40 1.40
2023 5880 1.732941 TAAGACCGCAATCGCACAAT 58.267 45.000 0.00 0.00 38.40 2.71
2024 5881 1.396648 CATAAGACCGCAATCGCACAA 59.603 47.619 0.00 0.00 38.40 3.33
2130 5987 3.550437 ATCAGTGCATAGACTTGACCC 57.450 47.619 0.00 0.00 0.00 4.46
2135 5992 5.046735 AGTCAGTCAATCAGTGCATAGACTT 60.047 40.000 0.00 0.00 34.39 3.01
2305 6176 4.556699 GCATCCAGCAAATATAACCCGAAC 60.557 45.833 0.00 0.00 44.79 3.95
2322 6193 0.694444 GGGACCCTTCCTAGCATCCA 60.694 60.000 2.09 0.00 42.38 3.41
2433 6308 1.501169 GCTGGCACCAAAATCAACAC 58.499 50.000 0.00 0.00 0.00 3.32
2453 6328 5.636543 ACACTTAATTGCCTACTACACGAAC 59.363 40.000 0.00 0.00 0.00 3.95
2553 6437 3.118738 CCCAGTAATCGCATACTATCCCC 60.119 52.174 0.47 0.00 34.40 4.81
2858 6930 4.631131 TGCATATATGGACAAGAACCTCG 58.369 43.478 14.51 0.00 0.00 4.63
2859 6931 5.822519 TGTTGCATATATGGACAAGAACCTC 59.177 40.000 14.51 0.15 0.00 3.85
2860 6932 5.590259 GTGTTGCATATATGGACAAGAACCT 59.410 40.000 14.51 0.00 0.00 3.50
2861 6933 5.356751 TGTGTTGCATATATGGACAAGAACC 59.643 40.000 14.51 2.37 0.00 3.62
2984 7062 1.068055 GGTCGTCGAGGCTCTTTACAA 60.068 52.381 13.50 0.00 0.00 2.41
3139 7220 6.837048 GGAAGAGTTAGAGAAAGACCTCCTAT 59.163 42.308 0.00 0.00 33.76 2.57
3223 7304 3.441496 AGCACAACAACACAATTCAGG 57.559 42.857 0.00 0.00 0.00 3.86
3477 7558 0.846015 TTCTATGCATGGGTGAGGGG 59.154 55.000 10.16 0.00 0.00 4.79
3478 7559 1.770658 TCTTCTATGCATGGGTGAGGG 59.229 52.381 10.16 0.00 0.00 4.30
3483 7564 6.041979 ACAAAACTTTTCTTCTATGCATGGGT 59.958 34.615 10.16 0.00 0.00 4.51
3484 7565 6.366877 CACAAAACTTTTCTTCTATGCATGGG 59.633 38.462 10.16 2.09 0.00 4.00
3486 7567 6.925165 ACCACAAAACTTTTCTTCTATGCATG 59.075 34.615 10.16 0.00 0.00 4.06
3487 7568 7.054491 ACCACAAAACTTTTCTTCTATGCAT 57.946 32.000 3.79 3.79 0.00 3.96
3489 7570 6.503524 TGACCACAAAACTTTTCTTCTATGC 58.496 36.000 0.00 0.00 0.00 3.14
3490 7571 9.533253 AAATGACCACAAAACTTTTCTTCTATG 57.467 29.630 0.00 0.00 0.00 2.23
3602 7713 6.656270 TGTACAGCAGCAAGTAACTACTAGTA 59.344 38.462 1.89 1.89 34.99 1.82
3603 7714 5.475909 TGTACAGCAGCAAGTAACTACTAGT 59.524 40.000 0.00 0.00 34.99 2.57
3604 7715 5.800941 GTGTACAGCAGCAAGTAACTACTAG 59.199 44.000 0.00 0.00 34.99 2.57
3903 10497 3.976793 ATGAGCTGCCATAAATTGTCG 57.023 42.857 0.00 0.00 0.00 4.35
3989 10616 0.035820 GGGCAGTACCAATTCCGACA 60.036 55.000 0.00 0.00 42.05 4.35
4472 11156 8.503196 GTGATATGCATTCGTTGATATAAACCA 58.497 33.333 3.54 0.00 0.00 3.67
4800 11748 3.688185 GCACCGACCTCGTATCTATATCA 59.312 47.826 0.00 0.00 37.74 2.15
4964 11937 5.643379 TGGGATGAAGAAAACAGCATAAC 57.357 39.130 0.00 0.00 0.00 1.89
4970 11943 5.156355 CAACGATTGGGATGAAGAAAACAG 58.844 41.667 0.00 0.00 0.00 3.16
5295 13031 1.307343 ATGGGAGAGGACCAGGGTG 60.307 63.158 0.00 0.00 42.15 4.61
5297 13033 3.652687 CATGGGAGAGGACCAGGG 58.347 66.667 0.00 0.00 42.15 4.45
5298 13034 0.031111 TACCATGGGAGAGGACCAGG 60.031 60.000 18.09 0.00 42.15 4.45
5299 13035 1.123928 GTACCATGGGAGAGGACCAG 58.876 60.000 18.09 0.00 42.15 4.00
5300 13036 0.716591 AGTACCATGGGAGAGGACCA 59.283 55.000 18.09 0.00 43.22 4.02
5301 13037 2.769602 TAGTACCATGGGAGAGGACC 57.230 55.000 18.09 0.00 0.00 4.46
5302 13038 5.000570 ACTATAGTACCATGGGAGAGGAC 57.999 47.826 18.09 4.02 0.00 3.85
5303 13039 5.681494 AACTATAGTACCATGGGAGAGGA 57.319 43.478 18.09 0.00 0.00 3.71
5304 13040 5.246429 GGAAACTATAGTACCATGGGAGAGG 59.754 48.000 18.09 2.44 0.00 3.69
5305 13041 5.246429 GGGAAACTATAGTACCATGGGAGAG 59.754 48.000 18.09 7.44 0.00 3.20
5306 13042 5.152934 GGGAAACTATAGTACCATGGGAGA 58.847 45.833 18.09 0.00 0.00 3.71
5307 13043 4.905456 TGGGAAACTATAGTACCATGGGAG 59.095 45.833 18.09 5.67 0.00 4.30
5308 13044 4.898268 TGGGAAACTATAGTACCATGGGA 58.102 43.478 18.09 3.85 0.00 4.37
5476 13511 2.299013 ACTTCTTCCATGCAGTCACGTA 59.701 45.455 0.00 0.00 0.00 3.57
5668 13757 4.639078 TGATGGACAAATTCAGGACTGA 57.361 40.909 0.00 0.00 37.91 3.41
5838 13931 5.339530 CCAGTCTGGTCCTTCCAATTTAGAT 60.340 44.000 11.09 0.00 46.59 1.98
5999 14102 3.056821 TGCTTCGAGCTATGTACAACAGT 60.057 43.478 0.00 0.00 42.97 3.55
6000 14103 3.511699 TGCTTCGAGCTATGTACAACAG 58.488 45.455 0.00 1.19 42.97 3.16
6001 14104 3.586100 TGCTTCGAGCTATGTACAACA 57.414 42.857 0.00 0.00 42.97 3.33
6002 14105 3.246226 CCATGCTTCGAGCTATGTACAAC 59.754 47.826 0.00 0.00 42.97 3.32
6003 14106 3.118775 ACCATGCTTCGAGCTATGTACAA 60.119 43.478 0.00 0.00 42.97 2.41
6004 14107 2.430694 ACCATGCTTCGAGCTATGTACA 59.569 45.455 0.00 0.00 42.97 2.90
6005 14108 3.099267 ACCATGCTTCGAGCTATGTAC 57.901 47.619 8.07 0.00 42.97 2.90
6006 14109 3.492656 GGAACCATGCTTCGAGCTATGTA 60.493 47.826 8.07 0.00 42.97 2.29
6149 15424 7.293745 CAGCAGTTACTCACACAAGATTTTAG 58.706 38.462 0.00 0.00 0.00 1.85
6487 15801 9.203421 CAATTGGTTCCCTGTTAATAGAAAAAC 57.797 33.333 0.00 2.59 0.00 2.43
6606 15922 5.571357 GTGCCGCAAAATAATATTAATCCGG 59.429 40.000 0.00 0.00 35.42 5.14
6628 15944 2.424601 CACCATGGCAGGTTGATTAGTG 59.575 50.000 13.04 0.00 40.77 2.74
6954 16524 5.306532 AGAGCATCACAAGCTTGTTTATG 57.693 39.130 30.36 30.36 43.58 1.90
7102 16777 2.547211 CAGCTGCTGGTCATTAGTATGC 59.453 50.000 21.71 0.00 0.00 3.14
7415 17159 2.146342 CAGTCAACAAGTGGCAGTAGG 58.854 52.381 0.00 0.00 32.63 3.18
7465 17210 4.393680 TGCGAGTCAAACAAGTTTTACAGT 59.606 37.500 11.29 0.00 31.16 3.55
7505 17250 7.178274 AGAGATAGGGTATTTGTGCTAGATCTG 59.822 40.741 5.18 0.00 0.00 2.90
7629 17401 4.214980 ACATTGTTGAGCAGAAACTTCG 57.785 40.909 0.00 0.00 0.00 3.79
7892 17734 3.181445 ACACTTGTAGGCATCCTGTTTCA 60.181 43.478 0.00 0.00 34.61 2.69
7912 17754 6.542735 AGAGAGATGTACAGTAATAAGCGACA 59.457 38.462 0.33 0.00 0.00 4.35
8120 18061 8.999905 TTGATGGATGGATCTAATGATGAAAA 57.000 30.769 0.00 0.00 32.19 2.29
8311 18274 0.610232 GTTGGAAGCAGGCTGGTCAT 60.610 55.000 20.86 4.93 0.00 3.06
8547 18519 8.649973 AACTTCAAACACACAAAACTTAACAA 57.350 26.923 0.00 0.00 0.00 2.83
8548 18520 8.649973 AAACTTCAAACACACAAAACTTAACA 57.350 26.923 0.00 0.00 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.