Multiple sequence alignment - TraesCS2B01G587100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G587100 chr2B 100.000 2852 0 0 968 3819 773722795 773725646 0.000000e+00 5267.0
1 TraesCS2B01G587100 chr2B 87.176 1466 173 9 1338 2791 773004691 773006153 0.000000e+00 1652.0
2 TraesCS2B01G587100 chr2B 100.000 720 0 0 1 720 773721828 773722547 0.000000e+00 1330.0
3 TraesCS2B01G587100 chr2B 92.609 230 15 2 995 1223 773004354 773004582 2.840000e-86 329.0
4 TraesCS2B01G587100 chr2A 92.413 2478 123 32 968 3426 760761668 760764099 0.000000e+00 3474.0
5 TraesCS2B01G587100 chr2A 86.649 1835 197 33 995 2819 760776447 760774651 0.000000e+00 1988.0
6 TraesCS2B01G587100 chr2A 78.135 311 31 17 2860 3159 760764531 760764815 3.050000e-36 163.0
7 TraesCS2B01G587100 chr2A 79.026 267 33 8 456 714 760761367 760761618 1.100000e-35 161.0
8 TraesCS2B01G587100 chr2D 96.623 1836 54 3 968 2799 630621026 630622857 0.000000e+00 3040.0
9 TraesCS2B01G587100 chr2D 95.761 1840 64 7 968 2799 630098924 630097091 0.000000e+00 2953.0
10 TraesCS2B01G587100 chr2D 86.166 1836 204 37 995 2819 629735649 629733853 0.000000e+00 1938.0
11 TraesCS2B01G587100 chr2D 87.541 1533 179 10 1293 2819 630066574 630068100 0.000000e+00 1762.0
12 TraesCS2B01G587100 chr2D 86.189 1354 176 8 1288 2632 630034004 630035355 0.000000e+00 1454.0
13 TraesCS2B01G587100 chr2D 86.002 1293 166 11 1539 2819 629975379 629976668 0.000000e+00 1371.0
14 TraesCS2B01G587100 chr2D 81.319 1001 80 31 2880 3819 630097080 630096126 0.000000e+00 713.0
15 TraesCS2B01G587100 chr2D 81.707 574 69 24 2880 3426 630622868 630623432 2.710000e-121 446.0
16 TraesCS2B01G587100 chr2D 93.506 231 13 2 995 1224 630066307 630066536 3.650000e-90 342.0
17 TraesCS2B01G587100 chr2D 81.798 445 43 17 276 713 630620547 630620960 4.730000e-89 339.0
18 TraesCS2B01G587100 chr2D 90.351 228 20 2 997 1223 630033725 630033951 8.020000e-77 298.0
19 TraesCS2B01G587100 chr2D 96.571 175 6 0 995 1169 629974961 629975135 1.340000e-74 291.0
20 TraesCS2B01G587100 chr2D 81.655 278 30 11 1555 1829 630697281 630697540 1.070000e-50 211.0
21 TraesCS2B01G587100 chr2D 97.297 111 3 0 1338 1448 629975264 629975374 5.040000e-44 189.0
22 TraesCS2B01G587100 chr2D 75.244 307 48 18 2878 3165 630125858 630125561 1.860000e-23 121.0
23 TraesCS2B01G587100 chr2D 91.463 82 3 2 1352 1429 630638146 630638065 4.030000e-20 110.0
24 TraesCS2B01G587100 chr2D 87.342 79 10 0 1682 1760 636238054 636237976 1.460000e-14 91.6
25 TraesCS2B01G587100 chr5D 84.328 1474 217 11 1339 2802 409014111 409012642 0.000000e+00 1430.0
26 TraesCS2B01G587100 chr5D 74.760 939 183 46 1682 2599 442893999 442893094 4.660000e-99 372.0
27 TraesCS2B01G587100 chr5D 70.758 937 224 37 1682 2596 449688248 449687340 2.360000e-37 167.0
28 TraesCS2B01G587100 chr5D 86.275 102 11 3 176 277 480470456 480470554 1.450000e-19 108.0
29 TraesCS2B01G587100 chr5A 83.356 1478 204 31 1341 2802 520118256 520116805 0.000000e+00 1328.0
30 TraesCS2B01G587100 chr5A 97.849 186 4 0 1 186 523834271 523834456 4.760000e-84 322.0
31 TraesCS2B01G587100 chr5A 74.448 317 71 8 1682 1993 569067690 569067379 1.110000e-25 128.0
32 TraesCS2B01G587100 chr6A 81.943 1462 231 24 1349 2786 15628586 15627134 0.000000e+00 1206.0
33 TraesCS2B01G587100 chr6B 81.693 1453 242 17 1349 2786 26226074 26224631 0.000000e+00 1188.0
34 TraesCS2B01G587100 chr3B 98.925 186 2 0 1 186 133387855 133388040 2.200000e-87 333.0
35 TraesCS2B01G587100 chr3B 98.925 186 2 0 1 186 697132993 697132808 2.200000e-87 333.0
36 TraesCS2B01G587100 chr7B 97.895 190 4 0 1 190 60080645 60080456 2.840000e-86 329.0
37 TraesCS2B01G587100 chr7B 97.849 186 4 0 1 186 60066477 60066662 4.760000e-84 322.0
38 TraesCS2B01G587100 chr5B 97.849 186 4 0 1 186 394746816 394746631 4.760000e-84 322.0
39 TraesCS2B01G587100 chr5B 95.980 199 6 2 1 197 493124113 493123915 4.760000e-84 322.0
40 TraesCS2B01G587100 chr5B 92.473 93 7 0 186 278 576798345 576798437 2.390000e-27 134.0
41 TraesCS2B01G587100 chr5B 89.362 94 9 1 189 282 565505172 565505080 2.410000e-22 117.0
42 TraesCS2B01G587100 chr5B 85.294 102 13 2 176 277 455163347 455163248 1.880000e-18 104.0
43 TraesCS2B01G587100 chr3A 97.849 186 4 0 1 186 20559297 20559482 4.760000e-84 322.0
44 TraesCS2B01G587100 chr1A 97.849 186 4 0 1 186 513746225 513746410 4.760000e-84 322.0
45 TraesCS2B01G587100 chr1B 88.172 93 11 0 186 278 108208815 108208907 1.120000e-20 111.0
46 TraesCS2B01G587100 chr1B 88.764 89 10 0 190 278 551025784 551025872 4.030000e-20 110.0
47 TraesCS2B01G587100 chr1B 87.097 93 12 0 186 278 568973255 568973347 5.220000e-19 106.0
48 TraesCS2B01G587100 chr3D 88.764 89 10 0 190 278 310683914 310684002 4.030000e-20 110.0
49 TraesCS2B01G587100 chr4A 86.275 102 11 3 176 277 590603970 590604068 1.450000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G587100 chr2B 773721828 773725646 3818 False 3298.5 5267 100.000000 1 3819 2 chr2B.!!$F2 3818
1 TraesCS2B01G587100 chr2B 773004354 773006153 1799 False 990.5 1652 89.892500 995 2791 2 chr2B.!!$F1 1796
2 TraesCS2B01G587100 chr2A 760774651 760776447 1796 True 1988.0 1988 86.649000 995 2819 1 chr2A.!!$R1 1824
3 TraesCS2B01G587100 chr2A 760761367 760764815 3448 False 1266.0 3474 83.191333 456 3426 3 chr2A.!!$F1 2970
4 TraesCS2B01G587100 chr2D 629733853 629735649 1796 True 1938.0 1938 86.166000 995 2819 1 chr2D.!!$R1 1824
5 TraesCS2B01G587100 chr2D 630096126 630098924 2798 True 1833.0 2953 88.540000 968 3819 2 chr2D.!!$R5 2851
6 TraesCS2B01G587100 chr2D 630620547 630623432 2885 False 1275.0 3040 86.709333 276 3426 3 chr2D.!!$F5 3150
7 TraesCS2B01G587100 chr2D 630066307 630068100 1793 False 1052.0 1762 90.523500 995 2819 2 chr2D.!!$F4 1824
8 TraesCS2B01G587100 chr2D 630033725 630035355 1630 False 876.0 1454 88.270000 997 2632 2 chr2D.!!$F3 1635
9 TraesCS2B01G587100 chr2D 629974961 629976668 1707 False 617.0 1371 93.290000 995 2819 3 chr2D.!!$F2 1824
10 TraesCS2B01G587100 chr5D 409012642 409014111 1469 True 1430.0 1430 84.328000 1339 2802 1 chr5D.!!$R1 1463
11 TraesCS2B01G587100 chr5D 442893094 442893999 905 True 372.0 372 74.760000 1682 2599 1 chr5D.!!$R2 917
12 TraesCS2B01G587100 chr5A 520116805 520118256 1451 True 1328.0 1328 83.356000 1341 2802 1 chr5A.!!$R1 1461
13 TraesCS2B01G587100 chr6A 15627134 15628586 1452 True 1206.0 1206 81.943000 1349 2786 1 chr6A.!!$R1 1437
14 TraesCS2B01G587100 chr6B 26224631 26226074 1443 True 1188.0 1188 81.693000 1349 2786 1 chr6B.!!$R1 1437

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
101 102 0.103390 GAGCCCGCTTACCTTCTCTC 59.897 60.0 0.00 0.0 0.00 3.20 F
672 686 0.178068 TCCTCTTCTTATGCCGTGGC 59.822 55.0 3.30 3.3 42.35 5.01 F
2050 2206 0.615331 GGAAGGTGCAGATCCTCACA 59.385 55.0 14.48 0.0 35.04 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1313 1350 1.062525 GTTGATTCACGGCATCGGC 59.937 57.895 0.00 0.0 41.39 5.54 R
2141 2297 2.908940 GCACAACAGCACCAGCCT 60.909 61.111 0.00 0.0 43.56 4.58 R
3278 3531 0.037975 AAGGCGCTGCAAATTCCTTG 60.038 50.000 7.64 0.0 35.95 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.385778 TGTACTACTTTTTCATTATGTGGCC 57.614 36.000 0.00 0.00 0.00 5.36
25 26 5.914898 ACTACTTTTTCATTATGTGGCCC 57.085 39.130 0.00 0.00 0.00 5.80
26 27 5.329399 ACTACTTTTTCATTATGTGGCCCA 58.671 37.500 0.00 0.00 0.00 5.36
27 28 4.535526 ACTTTTTCATTATGTGGCCCAC 57.464 40.909 7.01 7.01 34.56 4.61
28 29 3.260632 ACTTTTTCATTATGTGGCCCACC 59.739 43.478 12.25 0.00 32.73 4.61
29 30 2.917713 TTTCATTATGTGGCCCACCT 57.082 45.000 12.25 3.78 36.63 4.00
30 31 2.917713 TTCATTATGTGGCCCACCTT 57.082 45.000 12.25 1.15 36.63 3.50
31 32 2.917713 TCATTATGTGGCCCACCTTT 57.082 45.000 12.25 0.00 36.63 3.11
32 33 2.733956 TCATTATGTGGCCCACCTTTC 58.266 47.619 12.25 0.00 36.63 2.62
33 34 2.042297 TCATTATGTGGCCCACCTTTCA 59.958 45.455 12.25 0.00 36.63 2.69
34 35 2.917713 TTATGTGGCCCACCTTTCAT 57.082 45.000 12.25 0.00 36.63 2.57
35 36 2.917713 TATGTGGCCCACCTTTCATT 57.082 45.000 12.25 0.00 36.63 2.57
36 37 1.560505 ATGTGGCCCACCTTTCATTC 58.439 50.000 12.25 0.00 36.63 2.67
37 38 0.482446 TGTGGCCCACCTTTCATTCT 59.518 50.000 12.25 0.00 36.63 2.40
38 39 1.177401 GTGGCCCACCTTTCATTCTC 58.823 55.000 1.17 0.00 36.63 2.87
39 40 0.776810 TGGCCCACCTTTCATTCTCA 59.223 50.000 0.00 0.00 36.63 3.27
40 41 1.177401 GGCCCACCTTTCATTCTCAC 58.823 55.000 0.00 0.00 0.00 3.51
41 42 1.547675 GGCCCACCTTTCATTCTCACA 60.548 52.381 0.00 0.00 0.00 3.58
42 43 2.238521 GCCCACCTTTCATTCTCACAA 58.761 47.619 0.00 0.00 0.00 3.33
43 44 2.627699 GCCCACCTTTCATTCTCACAAA 59.372 45.455 0.00 0.00 0.00 2.83
44 45 3.305608 GCCCACCTTTCATTCTCACAAAG 60.306 47.826 0.00 0.00 0.00 2.77
45 46 3.891366 CCCACCTTTCATTCTCACAAAGT 59.109 43.478 0.00 0.00 0.00 2.66
46 47 4.261741 CCCACCTTTCATTCTCACAAAGTG 60.262 45.833 0.00 0.00 34.45 3.16
47 48 4.293415 CACCTTTCATTCTCACAAAGTGC 58.707 43.478 0.00 0.00 32.98 4.40
48 49 3.319122 ACCTTTCATTCTCACAAAGTGCC 59.681 43.478 0.00 0.00 32.98 5.01
49 50 3.571401 CCTTTCATTCTCACAAAGTGCCT 59.429 43.478 0.00 0.00 32.98 4.75
50 51 4.761739 CCTTTCATTCTCACAAAGTGCCTA 59.238 41.667 0.00 0.00 32.98 3.93
51 52 5.106396 CCTTTCATTCTCACAAAGTGCCTAG 60.106 44.000 0.00 0.00 32.98 3.02
52 53 3.942829 TCATTCTCACAAAGTGCCTAGG 58.057 45.455 3.67 3.67 32.98 3.02
53 54 3.582647 TCATTCTCACAAAGTGCCTAGGA 59.417 43.478 14.75 0.00 32.98 2.94
54 55 3.685139 TTCTCACAAAGTGCCTAGGAG 57.315 47.619 14.75 0.00 32.98 3.69
55 56 1.276421 TCTCACAAAGTGCCTAGGAGC 59.724 52.381 14.75 3.68 32.98 4.70
56 57 1.002430 CTCACAAAGTGCCTAGGAGCA 59.998 52.381 14.75 0.22 41.46 4.26
71 72 3.773974 GCACGTGCTAGAGCTGAC 58.226 61.111 32.55 0.00 42.66 3.51
72 73 1.214062 GCACGTGCTAGAGCTGACT 59.786 57.895 32.55 0.00 42.66 3.41
73 74 0.800300 GCACGTGCTAGAGCTGACTC 60.800 60.000 32.55 0.00 42.66 3.36
83 84 2.999507 GAGCTGACTCTTCACGAAGA 57.000 50.000 9.08 9.08 44.47 2.87
89 90 2.261671 TCTTCACGAAGAGCCCGC 59.738 61.111 5.38 0.00 42.06 6.13
90 91 2.262915 CTTCACGAAGAGCCCGCT 59.737 61.111 0.20 0.00 40.79 5.52
91 92 1.374758 CTTCACGAAGAGCCCGCTT 60.375 57.895 0.20 0.00 40.79 4.68
92 93 0.108804 CTTCACGAAGAGCCCGCTTA 60.109 55.000 0.20 0.00 40.79 3.09
93 94 0.389426 TTCACGAAGAGCCCGCTTAC 60.389 55.000 0.00 0.00 0.00 2.34
94 95 1.810030 CACGAAGAGCCCGCTTACC 60.810 63.158 0.00 0.00 0.00 2.85
95 96 1.982938 ACGAAGAGCCCGCTTACCT 60.983 57.895 0.00 0.00 0.00 3.08
96 97 1.218316 CGAAGAGCCCGCTTACCTT 59.782 57.895 0.00 0.00 0.00 3.50
97 98 0.806492 CGAAGAGCCCGCTTACCTTC 60.806 60.000 6.57 6.57 0.00 3.46
98 99 0.537653 GAAGAGCCCGCTTACCTTCT 59.462 55.000 8.59 0.00 32.72 2.85
99 100 0.537653 AAGAGCCCGCTTACCTTCTC 59.462 55.000 0.00 0.00 0.00 2.87
100 101 0.324830 AGAGCCCGCTTACCTTCTCT 60.325 55.000 0.00 0.00 0.00 3.10
101 102 0.103390 GAGCCCGCTTACCTTCTCTC 59.897 60.000 0.00 0.00 0.00 3.20
102 103 0.324830 AGCCCGCTTACCTTCTCTCT 60.325 55.000 0.00 0.00 0.00 3.10
103 104 0.103390 GCCCGCTTACCTTCTCTCTC 59.897 60.000 0.00 0.00 0.00 3.20
104 105 0.747852 CCCGCTTACCTTCTCTCTCC 59.252 60.000 0.00 0.00 0.00 3.71
105 106 1.686741 CCCGCTTACCTTCTCTCTCCT 60.687 57.143 0.00 0.00 0.00 3.69
106 107 1.679153 CCGCTTACCTTCTCTCTCCTC 59.321 57.143 0.00 0.00 0.00 3.71
107 108 2.650322 CGCTTACCTTCTCTCTCCTCT 58.350 52.381 0.00 0.00 0.00 3.69
108 109 3.020984 CGCTTACCTTCTCTCTCCTCTT 58.979 50.000 0.00 0.00 0.00 2.85
109 110 3.066203 CGCTTACCTTCTCTCTCCTCTTC 59.934 52.174 0.00 0.00 0.00 2.87
110 111 4.278310 GCTTACCTTCTCTCTCCTCTTCT 58.722 47.826 0.00 0.00 0.00 2.85
111 112 4.338400 GCTTACCTTCTCTCTCCTCTTCTC 59.662 50.000 0.00 0.00 0.00 2.87
112 113 5.755849 CTTACCTTCTCTCTCCTCTTCTCT 58.244 45.833 0.00 0.00 0.00 3.10
113 114 4.675063 ACCTTCTCTCTCCTCTTCTCTT 57.325 45.455 0.00 0.00 0.00 2.85
114 115 5.010708 ACCTTCTCTCTCCTCTTCTCTTT 57.989 43.478 0.00 0.00 0.00 2.52
115 116 5.016831 ACCTTCTCTCTCCTCTTCTCTTTC 58.983 45.833 0.00 0.00 0.00 2.62
116 117 4.402474 CCTTCTCTCTCCTCTTCTCTTTCC 59.598 50.000 0.00 0.00 0.00 3.13
117 118 4.946160 TCTCTCTCCTCTTCTCTTTCCT 57.054 45.455 0.00 0.00 0.00 3.36
118 119 4.855340 TCTCTCTCCTCTTCTCTTTCCTC 58.145 47.826 0.00 0.00 0.00 3.71
119 120 3.954258 CTCTCTCCTCTTCTCTTTCCTCC 59.046 52.174 0.00 0.00 0.00 4.30
120 121 3.335183 TCTCTCCTCTTCTCTTTCCTCCA 59.665 47.826 0.00 0.00 0.00 3.86
121 122 4.093011 CTCTCCTCTTCTCTTTCCTCCAA 58.907 47.826 0.00 0.00 0.00 3.53
122 123 4.693420 TCTCCTCTTCTCTTTCCTCCAAT 58.307 43.478 0.00 0.00 0.00 3.16
123 124 5.097234 TCTCCTCTTCTCTTTCCTCCAATT 58.903 41.667 0.00 0.00 0.00 2.32
124 125 6.264528 TCTCCTCTTCTCTTTCCTCCAATTA 58.735 40.000 0.00 0.00 0.00 1.40
125 126 6.730977 TCTCCTCTTCTCTTTCCTCCAATTAA 59.269 38.462 0.00 0.00 0.00 1.40
126 127 6.951971 TCCTCTTCTCTTTCCTCCAATTAAG 58.048 40.000 0.00 0.00 0.00 1.85
127 128 5.588246 CCTCTTCTCTTTCCTCCAATTAAGC 59.412 44.000 0.00 0.00 0.00 3.09
128 129 6.126863 TCTTCTCTTTCCTCCAATTAAGCA 57.873 37.500 0.00 0.00 0.00 3.91
129 130 6.542821 TCTTCTCTTTCCTCCAATTAAGCAA 58.457 36.000 0.00 0.00 0.00 3.91
130 131 7.004086 TCTTCTCTTTCCTCCAATTAAGCAAA 58.996 34.615 0.00 0.00 0.00 3.68
131 132 7.505585 TCTTCTCTTTCCTCCAATTAAGCAAAA 59.494 33.333 0.00 0.00 0.00 2.44
132 133 7.595819 TCTCTTTCCTCCAATTAAGCAAAAA 57.404 32.000 0.00 0.00 0.00 1.94
133 134 8.193953 TCTCTTTCCTCCAATTAAGCAAAAAT 57.806 30.769 0.00 0.00 0.00 1.82
134 135 9.308000 TCTCTTTCCTCCAATTAAGCAAAAATA 57.692 29.630 0.00 0.00 0.00 1.40
160 161 7.560796 ACTAGTTTATTCCATATAGCCTGCT 57.439 36.000 0.00 0.00 0.00 4.24
161 162 7.390027 ACTAGTTTATTCCATATAGCCTGCTG 58.610 38.462 0.97 0.00 0.00 4.41
162 163 6.439636 AGTTTATTCCATATAGCCTGCTGA 57.560 37.500 0.97 0.00 0.00 4.26
163 164 6.234177 AGTTTATTCCATATAGCCTGCTGAC 58.766 40.000 0.97 0.00 0.00 3.51
164 165 6.043706 AGTTTATTCCATATAGCCTGCTGACT 59.956 38.462 0.97 0.00 0.00 3.41
165 166 4.550076 ATTCCATATAGCCTGCTGACTC 57.450 45.455 0.97 0.00 0.00 3.36
166 167 2.962859 TCCATATAGCCTGCTGACTCA 58.037 47.619 0.97 0.00 0.00 3.41
167 168 3.514539 TCCATATAGCCTGCTGACTCAT 58.485 45.455 0.97 0.00 0.00 2.90
168 169 3.513119 TCCATATAGCCTGCTGACTCATC 59.487 47.826 0.97 0.00 0.00 2.92
169 170 3.514706 CCATATAGCCTGCTGACTCATCT 59.485 47.826 0.97 0.00 0.00 2.90
170 171 4.381825 CCATATAGCCTGCTGACTCATCTC 60.382 50.000 0.97 0.00 0.00 2.75
171 172 2.450867 TAGCCTGCTGACTCATCTCT 57.549 50.000 0.97 0.00 0.00 3.10
172 173 2.450867 AGCCTGCTGACTCATCTCTA 57.549 50.000 0.00 0.00 0.00 2.43
173 174 2.961510 AGCCTGCTGACTCATCTCTAT 58.038 47.619 0.00 0.00 0.00 1.98
174 175 3.307506 AGCCTGCTGACTCATCTCTATT 58.692 45.455 0.00 0.00 0.00 1.73
175 176 4.478203 AGCCTGCTGACTCATCTCTATTA 58.522 43.478 0.00 0.00 0.00 0.98
176 177 5.085920 AGCCTGCTGACTCATCTCTATTAT 58.914 41.667 0.00 0.00 0.00 1.28
177 178 6.252233 AGCCTGCTGACTCATCTCTATTATA 58.748 40.000 0.00 0.00 0.00 0.98
178 179 6.152661 AGCCTGCTGACTCATCTCTATTATAC 59.847 42.308 0.00 0.00 0.00 1.47
179 180 6.152661 GCCTGCTGACTCATCTCTATTATACT 59.847 42.308 0.00 0.00 0.00 2.12
180 181 7.309744 GCCTGCTGACTCATCTCTATTATACTT 60.310 40.741 0.00 0.00 0.00 2.24
181 182 8.028354 CCTGCTGACTCATCTCTATTATACTTG 58.972 40.741 0.00 0.00 0.00 3.16
182 183 7.374272 TGCTGACTCATCTCTATTATACTTGC 58.626 38.462 0.00 0.00 0.00 4.01
183 184 7.232330 TGCTGACTCATCTCTATTATACTTGCT 59.768 37.037 0.00 0.00 0.00 3.91
184 185 7.754924 GCTGACTCATCTCTATTATACTTGCTC 59.245 40.741 0.00 0.00 0.00 4.26
185 186 8.932434 TGACTCATCTCTATTATACTTGCTCT 57.068 34.615 0.00 0.00 0.00 4.09
186 187 9.008965 TGACTCATCTCTATTATACTTGCTCTC 57.991 37.037 0.00 0.00 0.00 3.20
187 188 8.932434 ACTCATCTCTATTATACTTGCTCTCA 57.068 34.615 0.00 0.00 0.00 3.27
188 189 9.360901 ACTCATCTCTATTATACTTGCTCTCAA 57.639 33.333 0.00 0.00 0.00 3.02
200 201 6.645790 ACTTGCTCTCAAAGAAATGAATGT 57.354 33.333 0.00 0.00 0.00 2.71
201 202 7.750229 ACTTGCTCTCAAAGAAATGAATGTA 57.250 32.000 0.00 0.00 0.00 2.29
202 203 8.345724 ACTTGCTCTCAAAGAAATGAATGTAT 57.654 30.769 0.00 0.00 0.00 2.29
203 204 8.457261 ACTTGCTCTCAAAGAAATGAATGTATC 58.543 33.333 0.00 0.00 0.00 2.24
204 205 8.571461 TTGCTCTCAAAGAAATGAATGTATCT 57.429 30.769 0.00 0.00 0.00 1.98
205 206 9.671279 TTGCTCTCAAAGAAATGAATGTATCTA 57.329 29.630 0.00 0.00 0.00 1.98
206 207 9.322773 TGCTCTCAAAGAAATGAATGTATCTAG 57.677 33.333 0.00 0.00 0.00 2.43
207 208 9.539825 GCTCTCAAAGAAATGAATGTATCTAGA 57.460 33.333 0.00 0.00 0.00 2.43
262 263 9.834628 TTATTCATTTCAACGACAAGTATTTCC 57.165 29.630 0.00 0.00 0.00 3.13
263 264 5.922546 TCATTTCAACGACAAGTATTTCCG 58.077 37.500 0.00 0.00 0.00 4.30
264 265 4.735662 TTTCAACGACAAGTATTTCCGG 57.264 40.909 0.00 0.00 0.00 5.14
265 266 3.663995 TCAACGACAAGTATTTCCGGA 57.336 42.857 0.00 0.00 0.00 5.14
266 267 3.319755 TCAACGACAAGTATTTCCGGAC 58.680 45.455 1.83 0.00 0.00 4.79
267 268 1.986698 ACGACAAGTATTTCCGGACG 58.013 50.000 1.83 3.25 0.00 4.79
268 269 1.541147 ACGACAAGTATTTCCGGACGA 59.459 47.619 1.83 0.00 0.00 4.20
269 270 2.030007 ACGACAAGTATTTCCGGACGAA 60.030 45.455 1.83 0.00 0.00 3.85
270 271 2.597305 CGACAAGTATTTCCGGACGAAG 59.403 50.000 1.83 0.00 0.00 3.79
271 272 2.928116 GACAAGTATTTCCGGACGAAGG 59.072 50.000 1.83 0.00 0.00 3.46
272 273 2.277084 CAAGTATTTCCGGACGAAGGG 58.723 52.381 1.83 0.00 0.00 3.95
273 274 1.856629 AGTATTTCCGGACGAAGGGA 58.143 50.000 1.83 0.00 0.00 4.20
274 275 1.755380 AGTATTTCCGGACGAAGGGAG 59.245 52.381 1.83 0.00 33.01 4.30
279 280 0.256752 TCCGGACGAAGGGAGTATCA 59.743 55.000 0.00 0.00 36.25 2.15
291 292 3.967326 AGGGAGTATCATCGAATGGTCAA 59.033 43.478 0.00 0.00 36.25 3.18
309 310 9.829507 AATGGTCAATAACATTTCAAAGTCAAA 57.170 25.926 0.00 0.00 33.80 2.69
311 312 9.092876 TGGTCAATAACATTTCAAAGTCAAAAC 57.907 29.630 0.00 0.00 0.00 2.43
317 318 2.861462 TTCAAAGTCAAAACGGCCAG 57.139 45.000 2.24 0.00 0.00 4.85
330 331 1.151668 CGGCCAGTGAGTCAAAAGAG 58.848 55.000 2.24 0.00 0.00 2.85
339 340 6.261826 CCAGTGAGTCAAAAGAGATTTCAAGT 59.738 38.462 0.00 0.00 0.00 3.16
340 341 7.442364 CCAGTGAGTCAAAAGAGATTTCAAGTA 59.558 37.037 0.00 0.00 0.00 2.24
342 343 7.987458 AGTGAGTCAAAAGAGATTTCAAGTACA 59.013 33.333 0.00 0.00 0.00 2.90
366 367 7.176515 ACATATAAAGTGTTGAAATGTCTGCCA 59.823 33.333 0.00 0.00 0.00 4.92
396 397 2.052782 AAAAACAGAGCAAGTCCGGT 57.947 45.000 0.00 0.00 0.00 5.28
399 400 1.308998 AACAGAGCAAGTCCGGTTTG 58.691 50.000 14.46 14.46 0.00 2.93
407 408 2.658422 GTCCGGTTTGGGCGTCTA 59.342 61.111 0.00 0.00 38.76 2.59
420 427 1.655654 CGTCTAGATGGCACGAGCG 60.656 63.158 3.83 0.00 43.41 5.03
422 429 0.317436 GTCTAGATGGCACGAGCGAG 60.317 60.000 0.00 0.00 43.41 5.03
424 431 3.469754 TAGATGGCACGAGCGAGCG 62.470 63.158 6.24 0.00 40.00 5.03
475 482 2.552315 ACCAACCACTAATCAAACTGCG 59.448 45.455 0.00 0.00 0.00 5.18
508 522 4.942483 GCTCCAACTATCCTATAGCGACTA 59.058 45.833 0.00 0.00 0.00 2.59
509 523 5.591067 GCTCCAACTATCCTATAGCGACTAT 59.409 44.000 0.00 0.00 0.00 2.12
510 524 6.766944 GCTCCAACTATCCTATAGCGACTATA 59.233 42.308 0.00 0.00 0.00 1.31
511 525 7.254863 GCTCCAACTATCCTATAGCGACTATAC 60.255 44.444 0.00 0.00 0.00 1.47
512 526 7.627311 TCCAACTATCCTATAGCGACTATACA 58.373 38.462 0.00 0.00 0.00 2.29
529 543 7.163195 CGACTATACATACACACGTTGACTAAC 59.837 40.741 5.01 0.00 0.00 2.34
530 544 8.048534 ACTATACATACACACGTTGACTAACT 57.951 34.615 5.01 0.00 34.60 2.24
536 550 2.466571 CACACGTTGACTAACTCACGTC 59.533 50.000 0.00 0.00 35.67 4.34
586 600 2.059786 CATGGCCCCGCTGGAAATT 61.060 57.895 0.00 0.00 35.39 1.82
588 602 0.468029 ATGGCCCCGCTGGAAATTAG 60.468 55.000 0.00 0.00 35.39 1.73
590 604 2.490148 GCCCCGCTGGAAATTAGCC 61.490 63.158 0.00 0.00 37.90 3.93
597 611 2.051804 CTGGAAATTAGCCGCGCCTG 62.052 60.000 0.00 0.00 0.00 4.85
603 617 2.521958 ATTAGCCGCGCCTGTTGACT 62.522 55.000 0.00 0.00 0.00 3.41
608 622 2.034879 CGCGCCTGTTGACTCCATT 61.035 57.895 0.00 0.00 0.00 3.16
609 623 1.577328 CGCGCCTGTTGACTCCATTT 61.577 55.000 0.00 0.00 0.00 2.32
669 683 1.471676 CGCTTCCTCTTCTTATGCCGT 60.472 52.381 0.00 0.00 0.00 5.68
670 684 1.936547 GCTTCCTCTTCTTATGCCGTG 59.063 52.381 0.00 0.00 0.00 4.94
671 685 2.555199 CTTCCTCTTCTTATGCCGTGG 58.445 52.381 0.00 0.00 0.00 4.94
672 686 0.178068 TCCTCTTCTTATGCCGTGGC 59.822 55.000 3.30 3.30 42.35 5.01
714 729 1.871408 CGTGTCACTTGCTCTGCTCTT 60.871 52.381 0.65 0.00 0.00 2.85
715 730 1.797635 GTGTCACTTGCTCTGCTCTTC 59.202 52.381 0.00 0.00 0.00 2.87
717 732 2.103771 TGTCACTTGCTCTGCTCTTCTT 59.896 45.455 0.00 0.00 0.00 2.52
718 733 2.736192 GTCACTTGCTCTGCTCTTCTTC 59.264 50.000 0.00 0.00 0.00 2.87
719 734 2.075338 CACTTGCTCTGCTCTTCTTCC 58.925 52.381 0.00 0.00 0.00 3.46
1228 1261 3.207669 CGTCCGTCCGTCCCCTAG 61.208 72.222 0.00 0.00 0.00 3.02
1313 1350 4.720902 TGGGCTGGTGCGTGATGG 62.721 66.667 0.00 0.00 40.82 3.51
1663 1816 2.031465 GGCGACCCGGAGTTCAAA 59.969 61.111 0.73 0.00 0.00 2.69
2050 2206 0.615331 GGAAGGTGCAGATCCTCACA 59.385 55.000 14.48 0.00 35.04 3.58
2141 2297 3.749064 GGCTGACCGAGACTGCGA 61.749 66.667 0.00 0.00 34.03 5.10
2695 2866 1.298340 CATGGTGCCCAAGACCGTA 59.702 57.895 0.00 0.00 36.95 4.02
2826 2997 6.327626 ACCACCAGCAAGATGTAGAAGTATAT 59.672 38.462 0.00 0.00 0.00 0.86
2828 2999 6.870965 CACCAGCAAGATGTAGAAGTATATCC 59.129 42.308 0.00 0.00 29.11 2.59
2886 3058 1.674519 CGGGTGCCCTTTTTAATTGCC 60.675 52.381 5.64 0.00 0.00 4.52
3013 3196 5.768662 AGCTGCAAGATTCTATTATGTGCAT 59.231 36.000 8.48 0.00 34.07 3.96
3046 3233 2.265367 TCTCCCTGCTGGTTATGTGAA 58.735 47.619 9.00 0.00 34.77 3.18
3055 3242 6.012658 TGCTGGTTATGTGAAAAATGAGAC 57.987 37.500 0.00 0.00 0.00 3.36
3091 3305 0.464036 AGTCTGAAACTGACGGTGCA 59.536 50.000 0.00 0.00 36.65 4.57
3098 3312 0.532862 AACTGACGGTGCACAGGAAG 60.533 55.000 21.15 18.20 38.30 3.46
3105 3319 0.895100 GGTGCACAGGAAGATGCCAA 60.895 55.000 20.43 0.00 41.33 4.52
3121 3374 1.133976 GCCAATGATAGCCACTGGACT 60.134 52.381 0.00 0.00 44.61 3.85
3210 3463 4.023536 GCCGTGGAAAAGTGATTTCTTACA 60.024 41.667 0.00 0.00 45.57 2.41
3214 3467 5.915196 GTGGAAAAGTGATTTCTTACACTGC 59.085 40.000 0.00 0.00 44.94 4.40
3220 3473 7.458409 AAGTGATTTCTTACACTGCAATCAT 57.542 32.000 0.00 0.00 44.94 2.45
3233 3486 6.209192 ACACTGCAATCATTCATTGGTTAGAA 59.791 34.615 0.00 0.00 42.18 2.10
3238 3491 8.149647 TGCAATCATTCATTGGTTAGAAACTTT 58.850 29.630 0.00 0.00 42.18 2.66
3239 3492 8.992073 GCAATCATTCATTGGTTAGAAACTTTT 58.008 29.630 0.00 0.00 42.18 2.27
3271 3524 0.249398 ACGGGGAGAAAGGTGAATCG 59.751 55.000 0.00 0.00 0.00 3.34
3278 3531 2.416893 GAGAAAGGTGAATCGGTGCTTC 59.583 50.000 0.00 0.00 0.00 3.86
3279 3532 2.151202 GAAAGGTGAATCGGTGCTTCA 58.849 47.619 0.00 0.00 0.00 3.02
3280 3533 2.270352 AAGGTGAATCGGTGCTTCAA 57.730 45.000 0.00 0.00 34.59 2.69
3282 3535 0.804989 GGTGAATCGGTGCTTCAAGG 59.195 55.000 0.00 0.00 34.59 3.61
3283 3536 1.610624 GGTGAATCGGTGCTTCAAGGA 60.611 52.381 0.00 0.00 34.59 3.36
3284 3537 2.151202 GTGAATCGGTGCTTCAAGGAA 58.849 47.619 0.00 0.00 34.59 3.36
3285 3538 2.749621 GTGAATCGGTGCTTCAAGGAAT 59.250 45.455 0.00 0.00 34.59 3.01
3288 3541 3.855689 ATCGGTGCTTCAAGGAATTTG 57.144 42.857 0.00 0.00 38.17 2.32
3290 3543 1.000385 CGGTGCTTCAAGGAATTTGCA 60.000 47.619 0.00 0.00 36.70 4.08
3299 3555 0.681175 AGGAATTTGCAGCGCCTTTT 59.319 45.000 2.29 0.00 0.00 2.27
3317 3573 4.483311 CTTTTTCTTCATCTCTGCTTGGC 58.517 43.478 0.00 0.00 0.00 4.52
3332 3589 2.664916 CTTGGCGTTCAGTTGGATTTG 58.335 47.619 0.00 0.00 0.00 2.32
3333 3590 0.313672 TGGCGTTCAGTTGGATTTGC 59.686 50.000 0.00 0.00 0.00 3.68
3334 3591 0.598065 GGCGTTCAGTTGGATTTGCT 59.402 50.000 0.00 0.00 0.00 3.91
3336 3593 2.227865 GGCGTTCAGTTGGATTTGCTTA 59.772 45.455 0.00 0.00 0.00 3.09
3337 3594 3.119495 GGCGTTCAGTTGGATTTGCTTAT 60.119 43.478 0.00 0.00 0.00 1.73
3338 3595 3.853671 GCGTTCAGTTGGATTTGCTTATG 59.146 43.478 0.00 0.00 0.00 1.90
3339 3596 3.853671 CGTTCAGTTGGATTTGCTTATGC 59.146 43.478 0.00 0.00 40.20 3.14
3340 3597 4.379813 CGTTCAGTTGGATTTGCTTATGCT 60.380 41.667 1.96 0.00 40.48 3.79
3341 3598 5.163764 CGTTCAGTTGGATTTGCTTATGCTA 60.164 40.000 1.96 0.00 40.48 3.49
3350 3607 7.639039 TGGATTTGCTTATGCTAATACTTTCG 58.361 34.615 16.88 0.00 42.82 3.46
3351 3608 6.578919 GGATTTGCTTATGCTAATACTTTCGC 59.421 38.462 11.19 0.00 42.76 4.70
3359 3616 2.534757 GCTAATACTTTCGCCGTGTCTC 59.465 50.000 0.00 0.00 0.00 3.36
3383 3640 2.093306 ATTCGCTCATGTCACCGAAA 57.907 45.000 13.19 2.70 42.08 3.46
3391 3648 4.497340 GCTCATGTCACCGAAACTGAAAAA 60.497 41.667 0.00 0.00 0.00 1.94
3394 3651 6.205784 TCATGTCACCGAAACTGAAAAATTC 58.794 36.000 0.00 0.00 0.00 2.17
3408 3726 7.141363 ACTGAAAAATTCAACTCCATTTCGAG 58.859 34.615 0.00 0.00 39.58 4.04
3461 3797 7.684897 CGTTGCAAAGTAAAAACCAAAAGTTAC 59.315 33.333 0.00 0.00 37.88 2.50
3468 3804 9.594478 AAGTAAAAACCAAAAGTTACTGAATGG 57.406 29.630 9.01 9.01 37.88 3.16
3474 3810 4.261405 CCAAAAGTTACTGAATGGCGTCAA 60.261 41.667 0.00 0.00 0.00 3.18
3492 3828 4.778143 AGACCCCAATGCGGCGAC 62.778 66.667 12.98 2.02 0.00 5.19
3510 3846 2.796651 GCCTGCTTGCATCCTTCG 59.203 61.111 0.00 0.00 0.00 3.79
3522 3858 2.485814 GCATCCTTCGGCCTTTCATATC 59.514 50.000 0.00 0.00 0.00 1.63
3813 4173 4.815533 TGAGACTTGGATTCAGAAGAGG 57.184 45.455 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.376018 GGGCCACATAATGAAAAAGTAGTACA 59.624 38.462 4.39 0.00 0.00 2.90
1 2 6.376018 TGGGCCACATAATGAAAAAGTAGTAC 59.624 38.462 0.00 0.00 0.00 2.73
2 3 6.376018 GTGGGCCACATAATGAAAAAGTAGTA 59.624 38.462 31.26 0.00 34.08 1.82
3 4 5.185056 GTGGGCCACATAATGAAAAAGTAGT 59.815 40.000 31.26 0.00 34.08 2.73
4 5 5.394115 GGTGGGCCACATAATGAAAAAGTAG 60.394 44.000 35.69 0.00 35.86 2.57
5 6 4.464597 GGTGGGCCACATAATGAAAAAGTA 59.535 41.667 35.69 0.00 35.86 2.24
6 7 3.260632 GGTGGGCCACATAATGAAAAAGT 59.739 43.478 35.69 0.00 35.86 2.66
7 8 3.515104 AGGTGGGCCACATAATGAAAAAG 59.485 43.478 35.69 0.00 35.86 2.27
8 9 3.515562 AGGTGGGCCACATAATGAAAAA 58.484 40.909 35.69 0.00 35.86 1.94
9 10 3.182887 AGGTGGGCCACATAATGAAAA 57.817 42.857 35.69 0.00 35.86 2.29
10 11 2.917713 AGGTGGGCCACATAATGAAA 57.082 45.000 35.69 0.00 35.86 2.69
11 12 2.917713 AAGGTGGGCCACATAATGAA 57.082 45.000 35.69 0.00 35.86 2.57
12 13 2.042297 TGAAAGGTGGGCCACATAATGA 59.958 45.455 35.69 14.94 35.86 2.57
13 14 2.455557 TGAAAGGTGGGCCACATAATG 58.544 47.619 35.69 0.00 35.86 1.90
14 15 2.917713 TGAAAGGTGGGCCACATAAT 57.082 45.000 35.69 22.42 35.86 1.28
15 16 2.917713 ATGAAAGGTGGGCCACATAA 57.082 45.000 35.69 19.62 35.86 1.90
16 17 2.311542 AGAATGAAAGGTGGGCCACATA 59.688 45.455 35.69 16.77 35.86 2.29
17 18 1.077663 AGAATGAAAGGTGGGCCACAT 59.922 47.619 35.69 28.70 35.86 3.21
18 19 0.482446 AGAATGAAAGGTGGGCCACA 59.518 50.000 35.69 17.39 35.86 4.17
19 20 1.177401 GAGAATGAAAGGTGGGCCAC 58.823 55.000 28.69 28.69 37.19 5.01
20 21 0.776810 TGAGAATGAAAGGTGGGCCA 59.223 50.000 0.00 0.00 37.19 5.36
21 22 1.177401 GTGAGAATGAAAGGTGGGCC 58.823 55.000 0.00 0.00 0.00 5.80
22 23 1.909700 TGTGAGAATGAAAGGTGGGC 58.090 50.000 0.00 0.00 0.00 5.36
23 24 3.891366 ACTTTGTGAGAATGAAAGGTGGG 59.109 43.478 0.00 0.00 0.00 4.61
24 25 4.794003 GCACTTTGTGAGAATGAAAGGTGG 60.794 45.833 1.52 0.00 35.23 4.61
25 26 4.293415 GCACTTTGTGAGAATGAAAGGTG 58.707 43.478 1.52 0.00 35.23 4.00
26 27 3.319122 GGCACTTTGTGAGAATGAAAGGT 59.681 43.478 1.52 0.00 35.23 3.50
27 28 3.571401 AGGCACTTTGTGAGAATGAAAGG 59.429 43.478 1.52 0.00 35.23 3.11
28 29 4.843220 AGGCACTTTGTGAGAATGAAAG 57.157 40.909 1.52 0.00 35.23 2.62
29 30 4.761739 CCTAGGCACTTTGTGAGAATGAAA 59.238 41.667 0.00 0.00 41.75 2.69
30 31 4.041567 TCCTAGGCACTTTGTGAGAATGAA 59.958 41.667 2.96 0.00 41.75 2.57
31 32 3.582647 TCCTAGGCACTTTGTGAGAATGA 59.417 43.478 2.96 0.00 41.75 2.57
32 33 3.937706 CTCCTAGGCACTTTGTGAGAATG 59.062 47.826 2.96 0.00 41.75 2.67
33 34 3.620966 GCTCCTAGGCACTTTGTGAGAAT 60.621 47.826 2.96 0.00 41.75 2.40
34 35 2.289694 GCTCCTAGGCACTTTGTGAGAA 60.290 50.000 2.96 0.00 41.75 2.87
35 36 1.276421 GCTCCTAGGCACTTTGTGAGA 59.724 52.381 2.96 0.00 41.75 3.27
36 37 1.002430 TGCTCCTAGGCACTTTGTGAG 59.998 52.381 2.96 0.00 41.75 3.51
37 38 1.055849 TGCTCCTAGGCACTTTGTGA 58.944 50.000 2.96 0.00 41.75 3.58
38 39 3.631453 TGCTCCTAGGCACTTTGTG 57.369 52.632 2.96 0.00 41.75 3.33
52 53 4.939966 GAGTCAGCTCTAGCACGTGCTC 62.940 59.091 43.74 29.46 42.10 4.26
53 54 3.144298 GAGTCAGCTCTAGCACGTGCT 62.144 57.143 41.46 41.46 45.16 4.40
54 55 0.800300 GAGTCAGCTCTAGCACGTGC 60.800 60.000 32.79 32.79 45.16 5.34
55 56 3.320884 GAGTCAGCTCTAGCACGTG 57.679 57.895 12.28 12.28 45.16 4.49
64 65 2.999507 TCTTCGTGAAGAGTCAGCTC 57.000 50.000 8.19 0.00 42.06 4.09
72 73 1.816863 AAGCGGGCTCTTCGTGAAGA 61.817 55.000 11.54 11.54 44.47 2.87
73 74 0.108804 TAAGCGGGCTCTTCGTGAAG 60.109 55.000 3.17 3.17 39.71 3.02
74 75 0.389426 GTAAGCGGGCTCTTCGTGAA 60.389 55.000 0.00 0.00 0.00 3.18
75 76 1.214589 GTAAGCGGGCTCTTCGTGA 59.785 57.895 0.00 0.00 0.00 4.35
76 77 1.810030 GGTAAGCGGGCTCTTCGTG 60.810 63.158 0.00 0.00 0.00 4.35
77 78 1.542187 AAGGTAAGCGGGCTCTTCGT 61.542 55.000 0.00 0.00 0.00 3.85
78 79 0.806492 GAAGGTAAGCGGGCTCTTCG 60.806 60.000 0.00 0.00 0.00 3.79
79 80 0.537653 AGAAGGTAAGCGGGCTCTTC 59.462 55.000 10.83 10.83 35.41 2.87
80 81 0.537653 GAGAAGGTAAGCGGGCTCTT 59.462 55.000 0.00 0.00 0.00 2.85
81 82 0.324830 AGAGAAGGTAAGCGGGCTCT 60.325 55.000 0.00 0.00 0.00 4.09
82 83 0.103390 GAGAGAAGGTAAGCGGGCTC 59.897 60.000 0.00 0.00 0.00 4.70
83 84 0.324830 AGAGAGAAGGTAAGCGGGCT 60.325 55.000 0.00 0.00 0.00 5.19
84 85 0.103390 GAGAGAGAAGGTAAGCGGGC 59.897 60.000 0.00 0.00 0.00 6.13
85 86 0.747852 GGAGAGAGAAGGTAAGCGGG 59.252 60.000 0.00 0.00 0.00 6.13
86 87 1.679153 GAGGAGAGAGAAGGTAAGCGG 59.321 57.143 0.00 0.00 0.00 5.52
87 88 2.650322 AGAGGAGAGAGAAGGTAAGCG 58.350 52.381 0.00 0.00 0.00 4.68
88 89 4.278310 AGAAGAGGAGAGAGAAGGTAAGC 58.722 47.826 0.00 0.00 0.00 3.09
89 90 5.755849 AGAGAAGAGGAGAGAGAAGGTAAG 58.244 45.833 0.00 0.00 0.00 2.34
90 91 5.789574 AGAGAAGAGGAGAGAGAAGGTAA 57.210 43.478 0.00 0.00 0.00 2.85
91 92 5.789574 AAGAGAAGAGGAGAGAGAAGGTA 57.210 43.478 0.00 0.00 0.00 3.08
92 93 4.675063 AAGAGAAGAGGAGAGAGAAGGT 57.325 45.455 0.00 0.00 0.00 3.50
93 94 4.402474 GGAAAGAGAAGAGGAGAGAGAAGG 59.598 50.000 0.00 0.00 0.00 3.46
94 95 5.264395 AGGAAAGAGAAGAGGAGAGAGAAG 58.736 45.833 0.00 0.00 0.00 2.85
95 96 5.261216 GAGGAAAGAGAAGAGGAGAGAGAA 58.739 45.833 0.00 0.00 0.00 2.87
96 97 4.325030 GGAGGAAAGAGAAGAGGAGAGAGA 60.325 50.000 0.00 0.00 0.00 3.10
97 98 3.954258 GGAGGAAAGAGAAGAGGAGAGAG 59.046 52.174 0.00 0.00 0.00 3.20
98 99 3.335183 TGGAGGAAAGAGAAGAGGAGAGA 59.665 47.826 0.00 0.00 0.00 3.10
99 100 3.707316 TGGAGGAAAGAGAAGAGGAGAG 58.293 50.000 0.00 0.00 0.00 3.20
100 101 3.835478 TGGAGGAAAGAGAAGAGGAGA 57.165 47.619 0.00 0.00 0.00 3.71
101 102 5.434182 AATTGGAGGAAAGAGAAGAGGAG 57.566 43.478 0.00 0.00 0.00 3.69
102 103 6.577239 GCTTAATTGGAGGAAAGAGAAGAGGA 60.577 42.308 0.00 0.00 0.00 3.71
103 104 5.588246 GCTTAATTGGAGGAAAGAGAAGAGG 59.412 44.000 0.00 0.00 0.00 3.69
104 105 6.176183 TGCTTAATTGGAGGAAAGAGAAGAG 58.824 40.000 0.00 0.00 0.00 2.85
105 106 6.126863 TGCTTAATTGGAGGAAAGAGAAGA 57.873 37.500 0.00 0.00 0.00 2.87
106 107 6.824305 TTGCTTAATTGGAGGAAAGAGAAG 57.176 37.500 0.00 0.00 0.00 2.85
107 108 7.595819 TTTTGCTTAATTGGAGGAAAGAGAA 57.404 32.000 9.21 0.00 36.14 2.87
108 109 7.595819 TTTTTGCTTAATTGGAGGAAAGAGA 57.404 32.000 9.21 1.31 36.14 3.10
134 135 9.273137 AGCAGGCTATATGGAATAAACTAGTAT 57.727 33.333 0.00 0.00 29.06 2.12
135 136 8.531982 CAGCAGGCTATATGGAATAAACTAGTA 58.468 37.037 0.00 0.00 29.06 1.82
136 137 7.235606 TCAGCAGGCTATATGGAATAAACTAGT 59.764 37.037 0.00 0.00 29.06 2.57
137 138 7.547370 GTCAGCAGGCTATATGGAATAAACTAG 59.453 40.741 0.00 0.00 29.06 2.57
138 139 7.235606 AGTCAGCAGGCTATATGGAATAAACTA 59.764 37.037 0.00 0.00 29.06 2.24
139 140 6.043706 AGTCAGCAGGCTATATGGAATAAACT 59.956 38.462 0.00 0.00 29.06 2.66
140 141 6.234177 AGTCAGCAGGCTATATGGAATAAAC 58.766 40.000 0.00 0.00 29.06 2.01
141 142 6.043127 TGAGTCAGCAGGCTATATGGAATAAA 59.957 38.462 0.00 0.00 29.06 1.40
142 143 5.543790 TGAGTCAGCAGGCTATATGGAATAA 59.456 40.000 0.00 0.00 29.06 1.40
143 144 5.086621 TGAGTCAGCAGGCTATATGGAATA 58.913 41.667 0.00 0.00 0.00 1.75
144 145 3.906218 TGAGTCAGCAGGCTATATGGAAT 59.094 43.478 0.00 0.00 0.00 3.01
145 146 3.308401 TGAGTCAGCAGGCTATATGGAA 58.692 45.455 0.00 0.00 0.00 3.53
146 147 2.962859 TGAGTCAGCAGGCTATATGGA 58.037 47.619 0.00 0.00 0.00 3.41
147 148 3.514706 AGATGAGTCAGCAGGCTATATGG 59.485 47.826 11.60 0.00 0.00 2.74
148 149 4.463539 AGAGATGAGTCAGCAGGCTATATG 59.536 45.833 11.60 0.00 0.00 1.78
149 150 4.676109 AGAGATGAGTCAGCAGGCTATAT 58.324 43.478 11.60 0.00 0.00 0.86
150 151 4.111255 AGAGATGAGTCAGCAGGCTATA 57.889 45.455 11.60 0.00 0.00 1.31
151 152 2.961510 AGAGATGAGTCAGCAGGCTAT 58.038 47.619 11.60 0.00 0.00 2.97
152 153 2.450867 AGAGATGAGTCAGCAGGCTA 57.549 50.000 11.60 0.00 0.00 3.93
153 154 2.450867 TAGAGATGAGTCAGCAGGCT 57.549 50.000 11.60 7.34 0.00 4.58
154 155 3.749665 AATAGAGATGAGTCAGCAGGC 57.250 47.619 11.60 0.00 0.00 4.85
155 156 7.701539 AGTATAATAGAGATGAGTCAGCAGG 57.298 40.000 11.60 0.00 0.00 4.85
156 157 7.541783 GCAAGTATAATAGAGATGAGTCAGCAG 59.458 40.741 11.60 0.00 0.00 4.24
157 158 7.232330 AGCAAGTATAATAGAGATGAGTCAGCA 59.768 37.037 11.60 0.00 0.00 4.41
158 159 7.601856 AGCAAGTATAATAGAGATGAGTCAGC 58.398 38.462 0.00 0.00 0.00 4.26
159 160 9.013229 AGAGCAAGTATAATAGAGATGAGTCAG 57.987 37.037 0.00 0.00 0.00 3.51
160 161 8.932434 AGAGCAAGTATAATAGAGATGAGTCA 57.068 34.615 0.00 0.00 0.00 3.41
161 162 9.008965 TGAGAGCAAGTATAATAGAGATGAGTC 57.991 37.037 0.00 0.00 0.00 3.36
162 163 8.932434 TGAGAGCAAGTATAATAGAGATGAGT 57.068 34.615 0.00 0.00 0.00 3.41
174 175 9.453572 ACATTCATTTCTTTGAGAGCAAGTATA 57.546 29.630 0.00 0.00 35.04 1.47
175 176 8.345724 ACATTCATTTCTTTGAGAGCAAGTAT 57.654 30.769 0.00 0.00 35.04 2.12
176 177 7.750229 ACATTCATTTCTTTGAGAGCAAGTA 57.250 32.000 0.00 0.00 35.04 2.24
177 178 6.645790 ACATTCATTTCTTTGAGAGCAAGT 57.354 33.333 0.00 0.00 35.04 3.16
178 179 8.675504 AGATACATTCATTTCTTTGAGAGCAAG 58.324 33.333 0.00 0.00 35.04 4.01
179 180 8.571461 AGATACATTCATTTCTTTGAGAGCAA 57.429 30.769 0.00 0.00 0.00 3.91
180 181 9.322773 CTAGATACATTCATTTCTTTGAGAGCA 57.677 33.333 0.00 0.00 0.00 4.26
181 182 9.539825 TCTAGATACATTCATTTCTTTGAGAGC 57.460 33.333 0.00 0.00 0.00 4.09
236 237 9.834628 GGAAATACTTGTCGTTGAAATGAATAA 57.165 29.630 0.00 0.00 0.00 1.40
237 238 8.172484 CGGAAATACTTGTCGTTGAAATGAATA 58.828 33.333 0.00 0.00 0.00 1.75
238 239 7.021196 CGGAAATACTTGTCGTTGAAATGAAT 58.979 34.615 0.00 0.00 0.00 2.57
239 240 6.367421 CGGAAATACTTGTCGTTGAAATGAA 58.633 36.000 0.00 0.00 0.00 2.57
240 241 5.106869 CCGGAAATACTTGTCGTTGAAATGA 60.107 40.000 0.00 0.00 0.00 2.57
241 242 5.086058 CCGGAAATACTTGTCGTTGAAATG 58.914 41.667 0.00 0.00 0.00 2.32
242 243 4.998672 TCCGGAAATACTTGTCGTTGAAAT 59.001 37.500 0.00 0.00 0.00 2.17
243 244 4.211794 GTCCGGAAATACTTGTCGTTGAAA 59.788 41.667 5.23 0.00 0.00 2.69
244 245 3.742369 GTCCGGAAATACTTGTCGTTGAA 59.258 43.478 5.23 0.00 0.00 2.69
245 246 3.319755 GTCCGGAAATACTTGTCGTTGA 58.680 45.455 5.23 0.00 0.00 3.18
246 247 2.091588 CGTCCGGAAATACTTGTCGTTG 59.908 50.000 5.23 0.00 0.00 4.10
247 248 2.030007 TCGTCCGGAAATACTTGTCGTT 60.030 45.455 5.23 0.00 0.00 3.85
248 249 1.541147 TCGTCCGGAAATACTTGTCGT 59.459 47.619 5.23 0.00 0.00 4.34
249 250 2.267188 TCGTCCGGAAATACTTGTCG 57.733 50.000 5.23 1.58 0.00 4.35
250 251 2.928116 CCTTCGTCCGGAAATACTTGTC 59.072 50.000 5.23 0.00 33.34 3.18
251 252 2.354403 CCCTTCGTCCGGAAATACTTGT 60.354 50.000 5.23 0.00 33.34 3.16
252 253 2.093869 TCCCTTCGTCCGGAAATACTTG 60.094 50.000 5.23 0.00 33.34 3.16
253 254 2.167900 CTCCCTTCGTCCGGAAATACTT 59.832 50.000 5.23 0.00 33.34 2.24
254 255 1.755380 CTCCCTTCGTCCGGAAATACT 59.245 52.381 5.23 0.00 33.34 2.12
255 256 1.479730 ACTCCCTTCGTCCGGAAATAC 59.520 52.381 5.23 0.00 33.34 1.89
256 257 1.856629 ACTCCCTTCGTCCGGAAATA 58.143 50.000 5.23 0.00 33.34 1.40
257 258 1.856629 TACTCCCTTCGTCCGGAAAT 58.143 50.000 5.23 0.00 33.34 2.17
258 259 1.753073 GATACTCCCTTCGTCCGGAAA 59.247 52.381 5.23 0.00 33.34 3.13
259 260 1.341285 TGATACTCCCTTCGTCCGGAA 60.341 52.381 5.23 0.00 0.00 4.30
260 261 0.256752 TGATACTCCCTTCGTCCGGA 59.743 55.000 0.00 0.00 0.00 5.14
261 262 1.269998 GATGATACTCCCTTCGTCCGG 59.730 57.143 0.00 0.00 0.00 5.14
262 263 1.069159 CGATGATACTCCCTTCGTCCG 60.069 57.143 0.00 0.00 0.00 4.79
263 264 2.228059 TCGATGATACTCCCTTCGTCC 58.772 52.381 0.00 0.00 34.27 4.79
264 265 3.984508 TTCGATGATACTCCCTTCGTC 57.015 47.619 0.00 0.00 34.27 4.20
265 266 3.005897 CCATTCGATGATACTCCCTTCGT 59.994 47.826 0.00 0.00 34.27 3.85
266 267 3.005897 ACCATTCGATGATACTCCCTTCG 59.994 47.826 0.00 0.00 34.02 3.79
267 268 4.039245 TGACCATTCGATGATACTCCCTTC 59.961 45.833 0.00 0.00 0.00 3.46
268 269 3.967326 TGACCATTCGATGATACTCCCTT 59.033 43.478 0.00 0.00 0.00 3.95
269 270 3.576861 TGACCATTCGATGATACTCCCT 58.423 45.455 0.00 0.00 0.00 4.20
270 271 4.336889 TTGACCATTCGATGATACTCCC 57.663 45.455 0.00 0.00 0.00 4.30
271 272 6.929049 TGTTATTGACCATTCGATGATACTCC 59.071 38.462 0.00 0.00 0.00 3.85
272 273 7.946655 TGTTATTGACCATTCGATGATACTC 57.053 36.000 0.00 0.00 0.00 2.59
273 274 8.908786 AATGTTATTGACCATTCGATGATACT 57.091 30.769 0.00 0.00 0.00 2.12
274 275 9.599322 GAAATGTTATTGACCATTCGATGATAC 57.401 33.333 0.00 0.00 0.00 2.24
279 280 8.522830 ACTTTGAAATGTTATTGACCATTCGAT 58.477 29.630 0.00 0.00 0.00 3.59
291 292 5.694458 GGCCGTTTTGACTTTGAAATGTTAT 59.306 36.000 0.00 0.00 0.00 1.89
309 310 1.134220 TCTTTTGACTCACTGGCCGTT 60.134 47.619 0.00 0.00 0.00 4.44
311 312 1.151668 CTCTTTTGACTCACTGGCCG 58.848 55.000 0.00 0.00 0.00 6.13
317 318 8.142994 TGTACTTGAAATCTCTTTTGACTCAC 57.857 34.615 0.00 0.00 0.00 3.51
339 340 8.673711 GGCAGACATTTCAACACTTTATATGTA 58.326 33.333 0.00 0.00 0.00 2.29
340 341 7.176515 TGGCAGACATTTCAACACTTTATATGT 59.823 33.333 0.00 0.00 0.00 2.29
342 343 7.148018 CCTGGCAGACATTTCAACACTTTATAT 60.148 37.037 17.94 0.00 0.00 0.86
349 350 2.227388 CTCCTGGCAGACATTTCAACAC 59.773 50.000 17.94 0.00 0.00 3.32
384 385 2.626780 GCCCAAACCGGACTTGCTC 61.627 63.158 9.46 2.06 36.56 4.26
387 388 2.593436 ACGCCCAAACCGGACTTG 60.593 61.111 9.46 11.40 36.56 3.16
388 389 1.474332 TAGACGCCCAAACCGGACTT 61.474 55.000 9.46 0.00 36.56 3.01
390 391 1.447314 CTAGACGCCCAAACCGGAC 60.447 63.158 9.46 0.00 36.56 4.79
396 397 0.392461 GTGCCATCTAGACGCCCAAA 60.392 55.000 10.37 0.00 0.00 3.28
399 400 2.279517 CGTGCCATCTAGACGCCC 60.280 66.667 10.37 0.00 0.00 6.13
403 404 0.317436 CTCGCTCGTGCCATCTAGAC 60.317 60.000 3.52 0.00 35.36 2.59
407 408 4.862092 CGCTCGCTCGTGCCATCT 62.862 66.667 3.52 0.00 35.36 2.90
420 427 1.734465 CAACTTGGATTCCACTCGCTC 59.266 52.381 4.45 0.00 30.78 5.03
422 429 0.804989 CCAACTTGGATTCCACTCGC 59.195 55.000 4.45 0.00 40.96 5.03
475 482 3.516615 GATAGTTGGAGCTGACTGACAC 58.483 50.000 0.00 0.00 0.00 3.67
508 522 6.805271 GTGAGTTAGTCAACGTGTGTATGTAT 59.195 38.462 0.00 0.00 39.78 2.29
509 523 6.144854 GTGAGTTAGTCAACGTGTGTATGTA 58.855 40.000 0.00 0.00 39.78 2.29
510 524 4.980434 GTGAGTTAGTCAACGTGTGTATGT 59.020 41.667 0.00 0.00 39.78 2.29
511 525 4.088071 CGTGAGTTAGTCAACGTGTGTATG 59.912 45.833 0.00 0.00 39.78 2.39
512 526 4.224433 CGTGAGTTAGTCAACGTGTGTAT 58.776 43.478 0.00 0.00 39.78 2.29
515 529 2.456989 ACGTGAGTTAGTCAACGTGTG 58.543 47.619 13.65 0.00 46.40 3.82
551 565 4.379813 GGCCATGATGCCGTTTCTTATATG 60.380 45.833 0.00 0.00 42.54 1.78
553 567 3.146066 GGCCATGATGCCGTTTCTTATA 58.854 45.455 0.00 0.00 42.54 0.98
554 568 1.956477 GGCCATGATGCCGTTTCTTAT 59.044 47.619 0.00 0.00 42.54 1.73
555 569 1.388547 GGCCATGATGCCGTTTCTTA 58.611 50.000 0.00 0.00 42.54 2.10
556 570 2.192605 GGCCATGATGCCGTTTCTT 58.807 52.632 0.00 0.00 42.54 2.52
557 571 3.924507 GGCCATGATGCCGTTTCT 58.075 55.556 0.00 0.00 42.54 2.52
565 579 3.719646 TTCCAGCGGGGCCATGATG 62.720 63.158 4.39 6.02 36.21 3.07
586 600 3.642778 GAGTCAACAGGCGCGGCTA 62.643 63.158 35.79 17.57 0.00 3.93
590 604 1.577328 AAATGGAGTCAACAGGCGCG 61.577 55.000 0.00 0.00 0.00 6.86
597 611 0.953960 ACGGCCGAAATGGAGTCAAC 60.954 55.000 35.90 0.00 42.00 3.18
603 617 3.242897 AACCGACGGCCGAAATGGA 62.243 57.895 35.90 0.00 42.00 3.41
649 663 1.212616 CGGCATAAGAAGAGGAAGCG 58.787 55.000 0.00 0.00 0.00 4.68
669 683 4.025858 GCCTCTGCCAGACTGCCA 62.026 66.667 0.00 0.00 0.00 4.92
1220 1253 5.009110 GCAATCAAGAATTAAGCTAGGGGAC 59.991 44.000 0.00 0.00 0.00 4.46
1221 1254 5.133221 GCAATCAAGAATTAAGCTAGGGGA 58.867 41.667 0.00 0.00 0.00 4.81
1222 1255 4.279420 GGCAATCAAGAATTAAGCTAGGGG 59.721 45.833 0.00 0.00 0.00 4.79
1223 1256 4.023707 CGGCAATCAAGAATTAAGCTAGGG 60.024 45.833 0.00 0.00 0.00 3.53
1228 1261 2.099756 AGGCGGCAATCAAGAATTAAGC 59.900 45.455 13.08 0.00 0.00 3.09
1270 1307 7.903995 TTCAATCCAATTAAATTCACCTTGC 57.096 32.000 0.00 0.00 0.00 4.01
1313 1350 1.062525 GTTGATTCACGGCATCGGC 59.937 57.895 0.00 0.00 41.39 5.54
2141 2297 2.908940 GCACAACAGCACCAGCCT 60.909 61.111 0.00 0.00 43.56 4.58
2826 2997 2.209690 TGACCACGACACTATCTGGA 57.790 50.000 0.00 0.00 32.72 3.86
2828 2999 2.690497 AGGATGACCACGACACTATCTG 59.310 50.000 0.00 0.00 38.94 2.90
2886 3058 3.122948 CGACACAACCCTGAATTTCTACG 59.877 47.826 0.00 0.00 0.00 3.51
3025 3212 2.481441 TCACATAACCAGCAGGGAGAT 58.519 47.619 0.00 0.00 41.15 2.75
3046 3233 3.117512 AGTCACAAGGGTGGTCTCATTTT 60.118 43.478 0.00 0.00 45.32 1.82
3055 3242 2.222027 GACTTTCAGTCACAAGGGTGG 58.778 52.381 0.00 0.00 44.45 4.61
3091 3305 3.484407 GCTATCATTGGCATCTTCCTGT 58.516 45.455 0.00 0.00 0.00 4.00
3098 3312 1.884579 CCAGTGGCTATCATTGGCATC 59.115 52.381 0.00 0.00 44.49 3.91
3105 3319 3.037851 TCTCAGTCCAGTGGCTATCAT 57.962 47.619 3.51 0.00 0.00 2.45
3121 3374 3.117888 GCCTACCCTGGAATGAATTCTCA 60.118 47.826 7.05 0.00 37.00 3.27
3210 3463 6.839124 TTCTAACCAATGAATGATTGCAGT 57.161 33.333 0.00 0.00 40.32 4.40
3220 3473 9.810545 CCACTTAAAAAGTTTCTAACCAATGAA 57.189 29.630 0.00 0.00 40.46 2.57
3233 3486 5.163488 CCCCGTTTCTTCCACTTAAAAAGTT 60.163 40.000 0.00 0.00 40.46 2.66
3238 3491 3.391955 TCTCCCCGTTTCTTCCACTTAAA 59.608 43.478 0.00 0.00 0.00 1.52
3239 3492 2.974099 TCTCCCCGTTTCTTCCACTTAA 59.026 45.455 0.00 0.00 0.00 1.85
3240 3493 2.612000 TCTCCCCGTTTCTTCCACTTA 58.388 47.619 0.00 0.00 0.00 2.24
3241 3494 1.430992 TCTCCCCGTTTCTTCCACTT 58.569 50.000 0.00 0.00 0.00 3.16
3271 3524 2.680577 CTGCAAATTCCTTGAAGCACC 58.319 47.619 0.00 0.00 33.73 5.01
3278 3531 0.037975 AAGGCGCTGCAAATTCCTTG 60.038 50.000 7.64 0.00 35.95 3.61
3279 3532 0.681175 AAAGGCGCTGCAAATTCCTT 59.319 45.000 7.64 0.00 38.68 3.36
3280 3533 0.681175 AAAAGGCGCTGCAAATTCCT 59.319 45.000 7.64 0.00 0.00 3.36
3282 3535 2.407090 AGAAAAAGGCGCTGCAAATTC 58.593 42.857 7.64 5.28 0.00 2.17
3283 3536 2.531522 AGAAAAAGGCGCTGCAAATT 57.468 40.000 7.64 0.00 0.00 1.82
3284 3537 2.224018 TGAAGAAAAAGGCGCTGCAAAT 60.224 40.909 7.64 0.00 0.00 2.32
3285 3538 1.135915 TGAAGAAAAAGGCGCTGCAAA 59.864 42.857 7.64 0.00 0.00 3.68
3288 3541 1.200948 AGATGAAGAAAAAGGCGCTGC 59.799 47.619 7.64 0.00 0.00 5.25
3290 3543 2.746362 CAGAGATGAAGAAAAAGGCGCT 59.254 45.455 7.64 0.00 0.00 5.92
3299 3555 1.002430 ACGCCAAGCAGAGATGAAGAA 59.998 47.619 0.00 0.00 0.00 2.52
3317 3573 3.853671 GCATAAGCAAATCCAACTGAACG 59.146 43.478 0.00 0.00 41.58 3.95
3332 3589 3.493503 ACGGCGAAAGTATTAGCATAAGC 59.506 43.478 16.62 0.00 38.73 3.09
3333 3590 4.506654 ACACGGCGAAAGTATTAGCATAAG 59.493 41.667 16.62 0.00 38.73 1.73
3334 3591 4.435425 ACACGGCGAAAGTATTAGCATAA 58.565 39.130 16.62 0.00 38.73 1.90
3336 3593 2.864343 GACACGGCGAAAGTATTAGCAT 59.136 45.455 16.62 0.00 38.73 3.79
3337 3594 2.094390 AGACACGGCGAAAGTATTAGCA 60.094 45.455 16.62 0.00 38.73 3.49
3338 3595 2.534757 GAGACACGGCGAAAGTATTAGC 59.465 50.000 16.62 0.00 36.55 3.09
3339 3596 3.791887 CAGAGACACGGCGAAAGTATTAG 59.208 47.826 16.62 0.00 0.00 1.73
3340 3597 3.192001 ACAGAGACACGGCGAAAGTATTA 59.808 43.478 16.62 0.00 0.00 0.98
3341 3598 2.029290 ACAGAGACACGGCGAAAGTATT 60.029 45.455 16.62 1.12 0.00 1.89
3350 3607 0.645868 GCGAATTACAGAGACACGGC 59.354 55.000 0.00 0.00 0.00 5.68
3351 3608 2.186076 GAGCGAATTACAGAGACACGG 58.814 52.381 0.00 0.00 0.00 4.94
3359 3616 2.282555 CGGTGACATGAGCGAATTACAG 59.717 50.000 0.00 0.00 39.17 2.74
3383 3640 7.013274 TCTCGAAATGGAGTTGAATTTTTCAGT 59.987 33.333 0.00 0.00 35.50 3.41
3391 3648 7.979444 TTTACTTCTCGAAATGGAGTTGAAT 57.021 32.000 0.00 0.00 35.52 2.57
3432 3768 2.186891 GGTTTTTACTTTGCAACGCGT 58.813 42.857 5.58 5.58 0.00 6.01
3461 3797 0.804989 GGGTCTTTGACGCCATTCAG 59.195 55.000 3.79 0.00 39.17 3.02
3468 3804 1.212751 GCATTGGGGTCTTTGACGC 59.787 57.895 6.27 6.27 43.35 5.19
3492 3828 2.796651 GAAGGATGCAAGCAGGCG 59.203 61.111 0.00 0.00 36.28 5.52
3510 3846 7.530426 AATGTAAATCTGGATATGAAAGGCC 57.470 36.000 0.00 0.00 0.00 5.19
3522 3858 5.711976 AGTGGGTGAGAAAATGTAAATCTGG 59.288 40.000 0.00 0.00 0.00 3.86
3608 3945 8.997323 TCACAAACATTTTTCAATTCAACAACT 58.003 25.926 0.00 0.00 0.00 3.16
3609 3946 9.604626 TTCACAAACATTTTTCAATTCAACAAC 57.395 25.926 0.00 0.00 0.00 3.32
3690 4040 9.034800 ACTTGTGGATTGTACATATTTTCCAAT 57.965 29.630 0.00 0.00 35.19 3.16
3750 4110 7.380536 TCATGCACTTTTAGAATTTGCAGAAT 58.619 30.769 5.12 0.00 34.23 2.40
3751 4111 6.747125 TCATGCACTTTTAGAATTTGCAGAA 58.253 32.000 5.12 0.00 34.23 3.02
3789 4149 5.105023 CCTCTTCTGAATCCAAGTCTCATGA 60.105 44.000 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.