Multiple sequence alignment - TraesCS2B01G586100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G586100 chr2B 100.000 4909 0 0 786 5694 772924258 772919350 0.000000e+00 9066.0
1 TraesCS2B01G586100 chr2B 96.089 4117 138 13 1152 5252 263832365 263836474 0.000000e+00 6689.0
2 TraesCS2B01G586100 chr2B 94.474 1502 62 7 2768 4249 106852006 106853506 0.000000e+00 2294.0
3 TraesCS2B01G586100 chr2B 100.000 549 0 0 1 549 772925043 772924495 0.000000e+00 1014.0
4 TraesCS2B01G586100 chr2B 96.751 554 12 4 1 549 263831247 263831799 0.000000e+00 918.0
5 TraesCS2B01G586100 chr2B 93.191 470 28 2 1194 1663 714782680 714782215 0.000000e+00 688.0
6 TraesCS2B01G586100 chr2A 95.815 4110 154 11 1156 5252 485220315 485224419 0.000000e+00 6621.0
7 TraesCS2B01G586100 chr2A 96.126 3020 102 5 1156 4161 485199751 485202769 0.000000e+00 4915.0
8 TraesCS2B01G586100 chr2A 96.841 2279 61 7 2984 5252 687897180 687899457 0.000000e+00 3799.0
9 TraesCS2B01G586100 chr2A 95.720 1846 71 1 1152 2989 687889881 687891726 0.000000e+00 2964.0
10 TraesCS2B01G586100 chr2A 92.459 862 53 9 4396 5252 709590349 709589495 0.000000e+00 1221.0
11 TraesCS2B01G586100 chr2A 91.389 511 33 5 1160 1663 724520798 724520292 0.000000e+00 689.0
12 TraesCS2B01G586100 chr2A 93.983 349 21 0 793 1141 687889477 687889825 3.910000e-146 529.0
13 TraesCS2B01G586100 chr2A 95.714 280 11 1 2159 2437 724518957 724518678 3.130000e-122 449.0
14 TraesCS2B01G586100 chr2A 88.191 398 18 10 1661 2031 724520239 724519844 1.130000e-121 448.0
15 TraesCS2B01G586100 chr2A 92.827 237 17 0 905 1141 5155484 5155720 1.520000e-90 344.0
16 TraesCS2B01G586100 chr2A 92.241 232 18 0 910 1141 92185248 92185479 4.250000e-86 329.0
17 TraesCS2B01G586100 chr2A 87.986 283 19 5 2492 2773 724518674 724518406 2.560000e-83 320.0
18 TraesCS2B01G586100 chr2A 92.908 141 9 1 2024 2163 724519176 724519036 2.690000e-48 204.0
19 TraesCS2B01G586100 chr6B 95.866 3096 111 6 786 3864 95969468 95972563 0.000000e+00 4992.0
20 TraesCS2B01G586100 chr6B 96.283 1399 43 7 3861 5252 95972691 95974087 0.000000e+00 2287.0
21 TraesCS2B01G586100 chr6B 94.585 554 24 4 1 549 464517204 464517756 0.000000e+00 852.0
22 TraesCS2B01G586100 chr6B 95.382 498 20 3 1 496 91948227 91948723 0.000000e+00 789.0
23 TraesCS2B01G586100 chr6B 94.369 515 24 3 1 510 95968523 95969037 0.000000e+00 785.0
24 TraesCS2B01G586100 chr6B 94.397 232 12 1 786 1016 464517781 464518012 7.020000e-94 355.0
25 TraesCS2B01G586100 chr4A 96.514 1549 51 2 2825 4372 597816010 597817556 0.000000e+00 2558.0
26 TraesCS2B01G586100 chr4A 94.729 702 30 5 2816 3513 515001623 515000925 0.000000e+00 1085.0
27 TraesCS2B01G586100 chr4A 98.039 51 1 0 2768 2818 515001764 515001714 7.860000e-14 89.8
28 TraesCS2B01G586100 chr5B 96.741 1534 45 2 2867 4399 62738976 62737447 0.000000e+00 2551.0
29 TraesCS2B01G586100 chr5B 94.022 552 28 3 1 547 676287609 676287058 0.000000e+00 832.0
30 TraesCS2B01G586100 chr5B 95.197 229 11 0 786 1014 676287031 676286803 4.190000e-96 363.0
31 TraesCS2B01G586100 chr4B 96.480 1534 50 4 2867 4399 275548818 275550348 0.000000e+00 2531.0
32 TraesCS2B01G586100 chr4B 95.238 861 36 5 4396 5252 275551110 275551969 0.000000e+00 1358.0
33 TraesCS2B01G586100 chr4B 98.039 51 1 0 2768 2818 96936388 96936338 7.860000e-14 89.8
34 TraesCS2B01G586100 chr7B 94.103 1662 64 11 2768 4399 697907694 697909351 0.000000e+00 2495.0
35 TraesCS2B01G586100 chr7B 94.175 515 25 5 3 514 604763883 604763371 0.000000e+00 780.0
36 TraesCS2B01G586100 chr1B 93.496 861 49 7 4396 5252 127608880 127608023 0.000000e+00 1273.0
37 TraesCS2B01G586100 chr1B 95.800 500 15 6 1 496 585353272 585353769 0.000000e+00 802.0
38 TraesCS2B01G586100 chr1B 96.327 245 9 0 804 1048 683656841 683657085 2.470000e-108 403.0
39 TraesCS2B01G586100 chr1B 92.453 265 17 1 786 1050 143667885 143667624 5.390000e-100 375.0
40 TraesCS2B01G586100 chr7A 92.451 861 57 8 4396 5252 293061303 293062159 0.000000e+00 1223.0
41 TraesCS2B01G586100 chr7A 97.513 563 12 1 3837 4399 293045830 293046390 0.000000e+00 961.0
42 TraesCS2B01G586100 chr7A 97.158 563 14 1 3837 4399 242468915 242468355 0.000000e+00 950.0
43 TraesCS2B01G586100 chr3A 92.352 863 57 9 4396 5252 133541844 133540985 0.000000e+00 1219.0
44 TraesCS2B01G586100 chr3A 93.671 237 15 0 905 1141 189292130 189292366 7.020000e-94 355.0
45 TraesCS2B01G586100 chr3A 91.880 234 19 0 908 1141 207114975 207114742 1.530000e-85 327.0
46 TraesCS2B01G586100 chr4D 95.164 703 28 5 2816 3514 66316462 66315762 0.000000e+00 1105.0
47 TraesCS2B01G586100 chr4D 96.380 442 16 0 5253 5694 164017986 164017545 0.000000e+00 728.0
48 TraesCS2B01G586100 chr4D 98.039 51 1 0 2768 2818 66316599 66316549 7.860000e-14 89.8
49 TraesCS2B01G586100 chr2D 90.837 753 48 11 2027 2774 590151578 590150842 0.000000e+00 989.0
50 TraesCS2B01G586100 chr2D 96.380 442 16 0 5253 5694 34208876 34208435 0.000000e+00 728.0
51 TraesCS2B01G586100 chr2D 95.955 445 18 0 5250 5694 382800579 382801023 0.000000e+00 723.0
52 TraesCS2B01G586100 chr2D 92.018 451 25 8 1213 1663 590153127 590152688 1.740000e-174 623.0
53 TraesCS2B01G586100 chr2D 94.459 379 12 2 1661 2031 590152635 590152258 4.950000e-160 575.0
54 TraesCS2B01G586100 chr1A 96.130 491 17 2 1 490 66227883 66228372 0.000000e+00 800.0
55 TraesCS2B01G586100 chr1A 94.563 515 23 5 1 514 536837209 536836699 0.000000e+00 791.0
56 TraesCS2B01G586100 chr1A 91.393 244 19 2 898 1141 66228501 66228742 3.290000e-87 333.0
57 TraesCS2B01G586100 chr1A 97.403 77 2 0 786 862 566574571 566574647 1.290000e-26 132.0
58 TraesCS2B01G586100 chr3D 96.606 442 15 0 5253 5694 504099367 504098926 0.000000e+00 734.0
59 TraesCS2B01G586100 chr3D 96.154 442 17 0 5253 5694 271907556 271907115 0.000000e+00 723.0
60 TraesCS2B01G586100 chr1D 96.606 442 15 0 5253 5694 332288249 332287808 0.000000e+00 734.0
61 TraesCS2B01G586100 chr1D 96.180 445 17 0 5250 5694 347013527 347013971 0.000000e+00 728.0
62 TraesCS2B01G586100 chr1D 85.517 145 7 4 786 930 393125541 393125671 7.690000e-29 139.0
63 TraesCS2B01G586100 chr7D 96.180 445 17 0 5250 5694 280558298 280558742 0.000000e+00 728.0
64 TraesCS2B01G586100 chr5D 95.955 445 18 0 5250 5694 87820481 87820925 0.000000e+00 723.0
65 TraesCS2B01G586100 chr6A 93.590 234 15 0 908 1141 17431431 17431198 3.260000e-92 350.0
66 TraesCS2B01G586100 chr6A 93.421 228 15 0 786 1013 1326849 1327076 7.070000e-89 339.0
67 TraesCS2B01G586100 chr5A 91.561 237 20 0 905 1141 1871774 1872010 1.530000e-85 327.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G586100 chr2B 772919350 772925043 5693 True 5040.0 9066 100.0000 1 5694 2 chr2B.!!$R2 5693
1 TraesCS2B01G586100 chr2B 263831247 263836474 5227 False 3803.5 6689 96.4200 1 5252 2 chr2B.!!$F2 5251
2 TraesCS2B01G586100 chr2B 106852006 106853506 1500 False 2294.0 2294 94.4740 2768 4249 1 chr2B.!!$F1 1481
3 TraesCS2B01G586100 chr2A 485220315 485224419 4104 False 6621.0 6621 95.8150 1156 5252 1 chr2A.!!$F4 4096
4 TraesCS2B01G586100 chr2A 485199751 485202769 3018 False 4915.0 4915 96.1260 1156 4161 1 chr2A.!!$F3 3005
5 TraesCS2B01G586100 chr2A 687897180 687899457 2277 False 3799.0 3799 96.8410 2984 5252 1 chr2A.!!$F5 2268
6 TraesCS2B01G586100 chr2A 687889477 687891726 2249 False 1746.5 2964 94.8515 793 2989 2 chr2A.!!$F6 2196
7 TraesCS2B01G586100 chr2A 709589495 709590349 854 True 1221.0 1221 92.4590 4396 5252 1 chr2A.!!$R1 856
8 TraesCS2B01G586100 chr2A 724518406 724520798 2392 True 422.0 689 91.2376 1160 2773 5 chr2A.!!$R2 1613
9 TraesCS2B01G586100 chr6B 95968523 95974087 5564 False 2688.0 4992 95.5060 1 5252 3 chr6B.!!$F2 5251
10 TraesCS2B01G586100 chr6B 464517204 464518012 808 False 603.5 852 94.4910 1 1016 2 chr6B.!!$F3 1015
11 TraesCS2B01G586100 chr4A 597816010 597817556 1546 False 2558.0 2558 96.5140 2825 4372 1 chr4A.!!$F1 1547
12 TraesCS2B01G586100 chr4A 515000925 515001764 839 True 587.4 1085 96.3840 2768 3513 2 chr4A.!!$R1 745
13 TraesCS2B01G586100 chr5B 62737447 62738976 1529 True 2551.0 2551 96.7410 2867 4399 1 chr5B.!!$R1 1532
14 TraesCS2B01G586100 chr5B 676286803 676287609 806 True 597.5 832 94.6095 1 1014 2 chr5B.!!$R2 1013
15 TraesCS2B01G586100 chr4B 275548818 275551969 3151 False 1944.5 2531 95.8590 2867 5252 2 chr4B.!!$F1 2385
16 TraesCS2B01G586100 chr7B 697907694 697909351 1657 False 2495.0 2495 94.1030 2768 4399 1 chr7B.!!$F1 1631
17 TraesCS2B01G586100 chr7B 604763371 604763883 512 True 780.0 780 94.1750 3 514 1 chr7B.!!$R1 511
18 TraesCS2B01G586100 chr1B 127608023 127608880 857 True 1273.0 1273 93.4960 4396 5252 1 chr1B.!!$R1 856
19 TraesCS2B01G586100 chr7A 293061303 293062159 856 False 1223.0 1223 92.4510 4396 5252 1 chr7A.!!$F2 856
20 TraesCS2B01G586100 chr7A 293045830 293046390 560 False 961.0 961 97.5130 3837 4399 1 chr7A.!!$F1 562
21 TraesCS2B01G586100 chr7A 242468355 242468915 560 True 950.0 950 97.1580 3837 4399 1 chr7A.!!$R1 562
22 TraesCS2B01G586100 chr3A 133540985 133541844 859 True 1219.0 1219 92.3520 4396 5252 1 chr3A.!!$R1 856
23 TraesCS2B01G586100 chr4D 66315762 66316599 837 True 597.4 1105 96.6015 2768 3514 2 chr4D.!!$R2 746
24 TraesCS2B01G586100 chr2D 590150842 590153127 2285 True 729.0 989 92.4380 1213 2774 3 chr2D.!!$R2 1561
25 TraesCS2B01G586100 chr1A 536836699 536837209 510 True 791.0 791 94.5630 1 514 1 chr1A.!!$R1 513
26 TraesCS2B01G586100 chr1A 66227883 66228742 859 False 566.5 800 93.7615 1 1141 2 chr1A.!!$F2 1140

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
400 406 0.178947 GGACATTTTCCACCCACCCA 60.179 55.000 0.00 0.0 45.10 4.51 F
1192 1537 0.529337 CGCATCTCCTCAAGCGTCAT 60.529 55.000 0.00 0.0 44.67 3.06 F
1632 1977 1.577468 CGGTGTTGAACACTGCTACA 58.423 50.000 25.54 0.0 46.96 2.74 F
2490 3689 2.315925 ATGAGGATTGTAGTGCCGTG 57.684 50.000 0.00 0.0 0.00 4.94 F
2972 4266 3.306364 CGGAGAGGTGACAGAAATGACTT 60.306 47.826 0.00 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1476 1821 0.320421 CCGAACGAGGTGTTGTCCAT 60.320 55.000 0.00 0.0 42.09 3.41 R
2585 3786 0.885879 AGAACACGTATGTCGGCTCA 59.114 50.000 0.00 0.0 44.69 4.26 R
3619 4927 1.750018 CGATGCAGATGCCACCCAA 60.750 57.895 1.72 0.0 41.18 4.12 R
3738 5046 1.595109 CAGACACTGCAGTTGCCGA 60.595 57.895 18.94 0.0 41.18 5.54 R
4884 7157 0.826062 GCCAAGCCCAATATTGCAGT 59.174 50.000 10.11 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 113 9.531942 GTCAATATTGTTTGCAAATCCATGATA 57.468 29.630 16.21 6.00 38.21 2.15
279 281 1.266718 GGTTTGCTGCGTTCTGATTGA 59.733 47.619 0.00 0.00 0.00 2.57
293 295 6.436261 GTTCTGATTGAACCATGAGCATATG 58.564 40.000 0.00 0.00 46.89 1.78
296 298 5.438833 TGATTGAACCATGAGCATATGACA 58.561 37.500 6.97 6.20 0.00 3.58
326 328 2.178876 ATCAACCACCGTCGGATGCA 62.179 55.000 20.51 0.00 0.00 3.96
377 379 1.263356 CGAAACCCTAGGTCTGTCCA 58.737 55.000 8.29 0.00 39.02 4.02
400 406 0.178947 GGACATTTTCCACCCACCCA 60.179 55.000 0.00 0.00 45.10 4.51
491 499 1.629297 CTAGCCCCTCTCTTCCCCT 59.371 63.158 0.00 0.00 0.00 4.79
515 526 2.757077 CGCCACCCTCCTTTCCTT 59.243 61.111 0.00 0.00 0.00 3.36
969 1134 0.686112 CACCACTCCTCTCTCTCCCC 60.686 65.000 0.00 0.00 0.00 4.81
1055 1343 4.227134 CACCTCGCCGCCAGCTAT 62.227 66.667 0.00 0.00 40.39 2.97
1085 1378 2.272170 TCCCCTCCCCTCCCTCATT 61.272 63.158 0.00 0.00 0.00 2.57
1131 1424 1.306482 CCTCCTTCCTCCTGCTCCA 60.306 63.158 0.00 0.00 0.00 3.86
1182 1520 1.599047 CAGTGGAACCGCATCTCCT 59.401 57.895 7.16 0.00 37.80 3.69
1184 1522 0.904865 AGTGGAACCGCATCTCCTCA 60.905 55.000 7.16 0.00 37.80 3.86
1192 1537 0.529337 CGCATCTCCTCAAGCGTCAT 60.529 55.000 0.00 0.00 44.67 3.06
1543 1888 4.636249 GCCCACATTTTTGTCCAAATACA 58.364 39.130 0.00 0.00 0.00 2.29
1559 1904 6.760298 TCCAAATACATTACCGTGCGTTTATA 59.240 34.615 0.00 0.00 0.00 0.98
1604 1949 3.953712 TGTCGTTGTGGTGAGTGATAT 57.046 42.857 0.00 0.00 0.00 1.63
1632 1977 1.577468 CGGTGTTGAACACTGCTACA 58.423 50.000 25.54 0.00 46.96 2.74
1658 2003 4.240881 AGGATTTGAAGCTGGCTATCAA 57.759 40.909 12.49 12.49 0.00 2.57
1706 2106 4.148838 TGAAACCGTGGAAGGATGAATTT 58.851 39.130 0.00 0.00 34.73 1.82
1875 2286 7.885399 AGATGGGTGTGATTATCTAAATAAGCC 59.115 37.037 0.00 0.00 33.69 4.35
2212 3406 6.969828 AATGTTCGAAGATTGTCCTCTTAC 57.030 37.500 18.73 0.00 35.63 2.34
2355 3550 9.654663 AGTTTATCTAGGACACTACATTGTTTC 57.345 33.333 0.00 0.00 0.00 2.78
2423 3618 9.185192 GGCATCAGTATTTGTTAATGCTAAATC 57.815 33.333 5.27 0.00 39.47 2.17
2490 3689 2.315925 ATGAGGATTGTAGTGCCGTG 57.684 50.000 0.00 0.00 0.00 4.94
2972 4266 3.306364 CGGAGAGGTGACAGAAATGACTT 60.306 47.826 0.00 0.00 0.00 3.01
3120 4416 8.877864 TGATTATCCCATTTGACTTAAAGTGT 57.122 30.769 0.00 0.00 0.00 3.55
3207 4503 5.769662 TGTGACATGTCCTTCTAGCAAAATT 59.230 36.000 22.85 0.00 0.00 1.82
3529 4829 4.085357 TGAGAGTTTGCCAGCTAAAAGA 57.915 40.909 0.00 0.00 0.00 2.52
3532 4832 4.655963 AGAGTTTGCCAGCTAAAAGATGA 58.344 39.130 0.00 0.00 32.38 2.92
3619 4927 5.185249 TGTCTAGAAAAACTGATCGCCTACT 59.815 40.000 0.00 0.00 0.00 2.57
3698 5006 6.968904 GTGAGTGGTATTAAAATGCTCATGTG 59.031 38.462 0.00 0.00 34.63 3.21
3738 5046 7.661536 TTAGAATGGTGTAGATAGAGTTGCT 57.338 36.000 0.00 0.00 0.00 3.91
3897 5339 3.008594 TGAGTGTCCACGTCCCAATATTT 59.991 43.478 0.00 0.00 36.20 1.40
4256 5736 3.815401 GCCTGTCATTGTTCTTAGTGTGT 59.185 43.478 0.00 0.00 0.00 3.72
4501 6771 1.741770 GAGCGAGTCCGGCATGTTT 60.742 57.895 0.00 0.00 36.06 2.83
4515 6785 5.760253 CCGGCATGTTTTTCATCTAGTAGAT 59.240 40.000 6.86 6.86 34.74 1.98
4692 6962 4.396478 TCATGTGTGTTTTTGTCTCCGAAA 59.604 37.500 0.00 0.00 0.00 3.46
4743 7013 9.430399 AAGAATATGAGTTTGAATTGATGGGAT 57.570 29.630 0.00 0.00 0.00 3.85
4773 7043 3.321682 CCACAACATGACAAATGGGAACT 59.678 43.478 0.00 0.00 0.00 3.01
4806 7076 0.984230 TGACAACTGGGACCCATCTC 59.016 55.000 15.39 6.79 30.82 2.75
4884 7157 4.407296 AGGCCACAACCAACAATAAAAAGA 59.593 37.500 5.01 0.00 0.00 2.52
5024 7299 1.108776 GTGCCACATCAGATTGCCAT 58.891 50.000 0.00 0.00 0.00 4.40
5079 7356 6.538945 AGTGACCAAAACAAAACAATAGGT 57.461 33.333 0.00 0.00 0.00 3.08
5140 7556 7.387122 AGAGAAGGTCGTTAATTTCAGTTTACC 59.613 37.037 0.00 0.00 0.00 2.85
5253 7669 7.579726 CAAGATAGCATATTTCTTGTAGTGCC 58.420 38.462 4.20 0.00 40.80 5.01
5254 7670 7.072263 AGATAGCATATTTCTTGTAGTGCCT 57.928 36.000 0.00 0.00 33.29 4.75
5255 7671 7.158021 AGATAGCATATTTCTTGTAGTGCCTC 58.842 38.462 0.00 0.00 33.29 4.70
5256 7672 4.455606 AGCATATTTCTTGTAGTGCCTCC 58.544 43.478 0.00 0.00 33.29 4.30
5257 7673 3.248602 GCATATTTCTTGTAGTGCCTCCG 59.751 47.826 0.00 0.00 0.00 4.63
5258 7674 1.739067 ATTTCTTGTAGTGCCTCCGC 58.261 50.000 0.00 0.00 0.00 5.54
5259 7675 0.321298 TTTCTTGTAGTGCCTCCGCC 60.321 55.000 0.00 0.00 0.00 6.13
5260 7676 2.125106 CTTGTAGTGCCTCCGCCC 60.125 66.667 0.00 0.00 0.00 6.13
5261 7677 2.606519 TTGTAGTGCCTCCGCCCT 60.607 61.111 0.00 0.00 0.00 5.19
5262 7678 2.579684 CTTGTAGTGCCTCCGCCCTC 62.580 65.000 0.00 0.00 0.00 4.30
5263 7679 3.851128 GTAGTGCCTCCGCCCTCC 61.851 72.222 0.00 0.00 0.00 4.30
5270 7686 3.411517 CTCCGCCCTCCCACCATT 61.412 66.667 0.00 0.00 0.00 3.16
5271 7687 3.704231 CTCCGCCCTCCCACCATTG 62.704 68.421 0.00 0.00 0.00 2.82
5273 7689 4.431131 CGCCCTCCCACCATTGCT 62.431 66.667 0.00 0.00 0.00 3.91
5274 7690 3.006677 GCCCTCCCACCATTGCTA 58.993 61.111 0.00 0.00 0.00 3.49
5275 7691 1.538666 GCCCTCCCACCATTGCTAT 59.461 57.895 0.00 0.00 0.00 2.97
5276 7692 0.771127 GCCCTCCCACCATTGCTATA 59.229 55.000 0.00 0.00 0.00 1.31
5277 7693 1.355720 GCCCTCCCACCATTGCTATAT 59.644 52.381 0.00 0.00 0.00 0.86
5278 7694 2.576191 GCCCTCCCACCATTGCTATATA 59.424 50.000 0.00 0.00 0.00 0.86
5279 7695 3.010138 GCCCTCCCACCATTGCTATATAA 59.990 47.826 0.00 0.00 0.00 0.98
5280 7696 4.508405 GCCCTCCCACCATTGCTATATAAA 60.508 45.833 0.00 0.00 0.00 1.40
5281 7697 5.010282 CCCTCCCACCATTGCTATATAAAC 58.990 45.833 0.00 0.00 0.00 2.01
5282 7698 5.222130 CCCTCCCACCATTGCTATATAAACT 60.222 44.000 0.00 0.00 0.00 2.66
5283 7699 5.707298 CCTCCCACCATTGCTATATAAACTG 59.293 44.000 0.00 0.00 0.00 3.16
5284 7700 5.070001 TCCCACCATTGCTATATAAACTGC 58.930 41.667 0.00 0.00 0.00 4.40
5285 7701 5.072741 CCCACCATTGCTATATAAACTGCT 58.927 41.667 0.00 0.00 0.00 4.24
5286 7702 5.048504 CCCACCATTGCTATATAAACTGCTG 60.049 44.000 0.00 0.00 0.00 4.41
5287 7703 5.455392 CACCATTGCTATATAAACTGCTGC 58.545 41.667 0.00 0.00 0.00 5.25
5288 7704 4.214119 ACCATTGCTATATAAACTGCTGCG 59.786 41.667 0.00 0.00 0.00 5.18
5289 7705 3.878086 TTGCTATATAAACTGCTGCGC 57.122 42.857 0.00 0.00 0.00 6.09
5290 7706 2.143122 TGCTATATAAACTGCTGCGCC 58.857 47.619 4.18 0.00 0.00 6.53
5291 7707 2.143122 GCTATATAAACTGCTGCGCCA 58.857 47.619 4.18 0.00 0.00 5.69
5292 7708 2.158449 GCTATATAAACTGCTGCGCCAG 59.842 50.000 4.18 8.74 38.78 4.85
5305 7721 4.864334 GCCAGCCATAGCCGCAGT 62.864 66.667 0.00 0.00 41.25 4.40
5306 7722 2.590007 CCAGCCATAGCCGCAGTC 60.590 66.667 0.00 0.00 41.25 3.51
5307 7723 2.187685 CAGCCATAGCCGCAGTCA 59.812 61.111 0.00 0.00 41.25 3.41
5308 7724 1.227764 CAGCCATAGCCGCAGTCAT 60.228 57.895 0.00 0.00 41.25 3.06
5309 7725 1.070445 AGCCATAGCCGCAGTCATC 59.930 57.895 0.00 0.00 41.25 2.92
5310 7726 1.070445 GCCATAGCCGCAGTCATCT 59.930 57.895 0.00 0.00 0.00 2.90
5311 7727 0.318441 GCCATAGCCGCAGTCATCTA 59.682 55.000 0.00 0.00 0.00 1.98
5312 7728 1.937108 GCCATAGCCGCAGTCATCTAC 60.937 57.143 0.00 0.00 0.00 2.59
5313 7729 1.341209 CCATAGCCGCAGTCATCTACA 59.659 52.381 0.00 0.00 0.00 2.74
5314 7730 2.028658 CCATAGCCGCAGTCATCTACAT 60.029 50.000 0.00 0.00 0.00 2.29
5315 7731 3.249091 CATAGCCGCAGTCATCTACATC 58.751 50.000 0.00 0.00 0.00 3.06
5316 7732 0.390860 AGCCGCAGTCATCTACATCC 59.609 55.000 0.00 0.00 0.00 3.51
5317 7733 0.104855 GCCGCAGTCATCTACATCCA 59.895 55.000 0.00 0.00 0.00 3.41
5318 7734 1.270518 GCCGCAGTCATCTACATCCAT 60.271 52.381 0.00 0.00 0.00 3.41
5319 7735 2.808202 GCCGCAGTCATCTACATCCATT 60.808 50.000 0.00 0.00 0.00 3.16
5320 7736 3.062763 CCGCAGTCATCTACATCCATTC 58.937 50.000 0.00 0.00 0.00 2.67
5321 7737 3.062763 CGCAGTCATCTACATCCATTCC 58.937 50.000 0.00 0.00 0.00 3.01
5322 7738 3.406764 GCAGTCATCTACATCCATTCCC 58.593 50.000 0.00 0.00 0.00 3.97
5323 7739 3.072184 GCAGTCATCTACATCCATTCCCT 59.928 47.826 0.00 0.00 0.00 4.20
5324 7740 4.445448 GCAGTCATCTACATCCATTCCCTT 60.445 45.833 0.00 0.00 0.00 3.95
5325 7741 5.688807 CAGTCATCTACATCCATTCCCTTT 58.311 41.667 0.00 0.00 0.00 3.11
5326 7742 5.762218 CAGTCATCTACATCCATTCCCTTTC 59.238 44.000 0.00 0.00 0.00 2.62
5327 7743 5.669447 AGTCATCTACATCCATTCCCTTTCT 59.331 40.000 0.00 0.00 0.00 2.52
5328 7744 5.994668 GTCATCTACATCCATTCCCTTTCTC 59.005 44.000 0.00 0.00 0.00 2.87
5329 7745 5.072329 TCATCTACATCCATTCCCTTTCTCC 59.928 44.000 0.00 0.00 0.00 3.71
5330 7746 4.635473 TCTACATCCATTCCCTTTCTCCT 58.365 43.478 0.00 0.00 0.00 3.69
5331 7747 3.659183 ACATCCATTCCCTTTCTCCTG 57.341 47.619 0.00 0.00 0.00 3.86
5332 7748 2.922283 ACATCCATTCCCTTTCTCCTGT 59.078 45.455 0.00 0.00 0.00 4.00
5333 7749 3.054065 ACATCCATTCCCTTTCTCCTGTC 60.054 47.826 0.00 0.00 0.00 3.51
5334 7750 1.916181 TCCATTCCCTTTCTCCTGTCC 59.084 52.381 0.00 0.00 0.00 4.02
5335 7751 1.635487 CCATTCCCTTTCTCCTGTCCA 59.365 52.381 0.00 0.00 0.00 4.02
5336 7752 2.619074 CCATTCCCTTTCTCCTGTCCAC 60.619 54.545 0.00 0.00 0.00 4.02
5337 7753 1.814429 TTCCCTTTCTCCTGTCCACA 58.186 50.000 0.00 0.00 0.00 4.17
5338 7754 1.056660 TCCCTTTCTCCTGTCCACAC 58.943 55.000 0.00 0.00 0.00 3.82
5339 7755 0.036875 CCCTTTCTCCTGTCCACACC 59.963 60.000 0.00 0.00 0.00 4.16
5340 7756 0.764890 CCTTTCTCCTGTCCACACCA 59.235 55.000 0.00 0.00 0.00 4.17
5341 7757 1.543429 CCTTTCTCCTGTCCACACCAC 60.543 57.143 0.00 0.00 0.00 4.16
5342 7758 1.417890 CTTTCTCCTGTCCACACCACT 59.582 52.381 0.00 0.00 0.00 4.00
5343 7759 2.391926 TTCTCCTGTCCACACCACTA 57.608 50.000 0.00 0.00 0.00 2.74
5344 7760 1.629043 TCTCCTGTCCACACCACTAC 58.371 55.000 0.00 0.00 0.00 2.73
5345 7761 1.147191 TCTCCTGTCCACACCACTACT 59.853 52.381 0.00 0.00 0.00 2.57
5346 7762 1.273606 CTCCTGTCCACACCACTACTG 59.726 57.143 0.00 0.00 0.00 2.74
5347 7763 0.320771 CCTGTCCACACCACTACTGC 60.321 60.000 0.00 0.00 0.00 4.40
5348 7764 0.320771 CTGTCCACACCACTACTGCC 60.321 60.000 0.00 0.00 0.00 4.85
5349 7765 1.003718 GTCCACACCACTACTGCCC 60.004 63.158 0.00 0.00 0.00 5.36
5350 7766 1.460497 TCCACACCACTACTGCCCA 60.460 57.895 0.00 0.00 0.00 5.36
5351 7767 1.302511 CCACACCACTACTGCCCAC 60.303 63.158 0.00 0.00 0.00 4.61
5352 7768 1.302511 CACACCACTACTGCCCACC 60.303 63.158 0.00 0.00 0.00 4.61
5353 7769 1.768482 ACACCACTACTGCCCACCA 60.768 57.895 0.00 0.00 0.00 4.17
5354 7770 1.133809 ACACCACTACTGCCCACCAT 61.134 55.000 0.00 0.00 0.00 3.55
5355 7771 0.677731 CACCACTACTGCCCACCATG 60.678 60.000 0.00 0.00 0.00 3.66
5356 7772 1.077501 CCACTACTGCCCACCATGG 60.078 63.158 11.19 11.19 37.25 3.66
5364 7780 2.124570 CCCACCATGGCTTCCTCG 60.125 66.667 13.04 0.00 35.79 4.63
5365 7781 2.825836 CCACCATGGCTTCCTCGC 60.826 66.667 13.04 0.00 0.00 5.03
5366 7782 3.197790 CACCATGGCTTCCTCGCG 61.198 66.667 13.04 0.00 0.00 5.87
5368 7784 4.845580 CCATGGCTTCCTCGCGCT 62.846 66.667 5.56 0.00 0.00 5.92
5369 7785 3.267860 CATGGCTTCCTCGCGCTC 61.268 66.667 5.56 0.00 0.00 5.03
5370 7786 4.537433 ATGGCTTCCTCGCGCTCC 62.537 66.667 5.56 0.00 0.00 4.70
5384 7800 3.452786 CTCCAGCGCTCTTCGGGA 61.453 66.667 7.13 10.50 38.94 5.14
5385 7801 3.708220 CTCCAGCGCTCTTCGGGAC 62.708 68.421 7.13 0.00 38.94 4.46
5405 7821 4.651008 GCGGACGACGGACCACAA 62.651 66.667 12.40 0.00 44.51 3.33
5406 7822 2.430244 CGGACGACGGACCACAAG 60.430 66.667 12.40 0.00 39.42 3.16
5407 7823 2.048503 GGACGACGGACCACAAGG 60.049 66.667 0.00 0.00 42.21 3.61
5408 7824 2.567497 GGACGACGGACCACAAGGA 61.567 63.158 0.00 0.00 38.69 3.36
5409 7825 1.080705 GACGACGGACCACAAGGAG 60.081 63.158 0.00 0.00 38.69 3.69
5410 7826 1.521450 GACGACGGACCACAAGGAGA 61.521 60.000 0.00 0.00 38.69 3.71
5411 7827 0.898789 ACGACGGACCACAAGGAGAT 60.899 55.000 0.00 0.00 38.69 2.75
5412 7828 0.458543 CGACGGACCACAAGGAGATG 60.459 60.000 0.00 0.00 38.69 2.90
5413 7829 0.108138 GACGGACCACAAGGAGATGG 60.108 60.000 0.00 0.00 42.13 3.51
5414 7830 1.450312 CGGACCACAAGGAGATGGC 60.450 63.158 0.00 0.00 39.84 4.40
5415 7831 1.685224 GGACCACAAGGAGATGGCA 59.315 57.895 0.00 0.00 39.84 4.92
5416 7832 0.393537 GGACCACAAGGAGATGGCAG 60.394 60.000 0.00 0.00 39.84 4.85
5417 7833 1.001641 ACCACAAGGAGATGGCAGC 60.002 57.895 0.00 0.00 39.84 5.25
5418 7834 1.751927 CCACAAGGAGATGGCAGCC 60.752 63.158 3.66 3.66 36.89 4.85
5419 7835 1.001764 CACAAGGAGATGGCAGCCA 60.002 57.895 18.99 18.99 38.19 4.75
5420 7836 3.757059 CCACAAGGAGATGGCAGCCAT 62.757 57.143 28.05 28.05 41.95 4.40
5421 7837 0.333993 ACAAGGAGATGGCAGCCATT 59.666 50.000 28.30 17.31 45.26 3.16
5422 7838 0.744874 CAAGGAGATGGCAGCCATTG 59.255 55.000 28.30 18.33 45.26 2.82
5433 7849 2.895372 GCCATTGCTACCGACCGG 60.895 66.667 6.94 6.94 36.43 5.28
5434 7850 2.895372 CCATTGCTACCGACCGGC 60.895 66.667 8.55 0.00 39.32 6.13
5435 7851 2.186903 CATTGCTACCGACCGGCT 59.813 61.111 8.55 0.00 39.32 5.52
5436 7852 2.173669 CATTGCTACCGACCGGCTG 61.174 63.158 8.55 2.80 39.32 4.85
5437 7853 3.385749 ATTGCTACCGACCGGCTGG 62.386 63.158 11.02 11.02 39.32 4.85
5473 7889 2.677971 GACGACGATGTCCCAATGG 58.322 57.895 0.00 0.00 32.61 3.16
5474 7890 0.174845 GACGACGATGTCCCAATGGA 59.825 55.000 0.00 0.00 38.75 3.41
5475 7891 0.175760 ACGACGATGTCCCAATGGAG 59.824 55.000 0.00 0.00 42.85 3.86
5476 7892 0.459899 CGACGATGTCCCAATGGAGA 59.540 55.000 0.00 0.00 42.85 3.71
5477 7893 1.134818 CGACGATGTCCCAATGGAGAA 60.135 52.381 0.00 0.00 42.85 2.87
5478 7894 2.280628 GACGATGTCCCAATGGAGAAC 58.719 52.381 0.00 0.00 42.85 3.01
5479 7895 1.628340 ACGATGTCCCAATGGAGAACA 59.372 47.619 0.00 2.53 42.85 3.18
5480 7896 2.239654 ACGATGTCCCAATGGAGAACAT 59.760 45.455 0.00 7.71 42.85 2.71
5481 7897 2.615447 CGATGTCCCAATGGAGAACATG 59.385 50.000 15.97 0.00 42.85 3.21
5482 7898 2.512692 TGTCCCAATGGAGAACATGG 57.487 50.000 0.00 0.00 42.85 3.66
5483 7899 1.710244 TGTCCCAATGGAGAACATGGT 59.290 47.619 0.00 0.00 42.85 3.55
5484 7900 2.916269 TGTCCCAATGGAGAACATGGTA 59.084 45.455 0.00 0.00 42.85 3.25
5485 7901 3.054434 TGTCCCAATGGAGAACATGGTAG 60.054 47.826 0.00 0.00 42.85 3.18
5486 7902 3.054361 GTCCCAATGGAGAACATGGTAGT 60.054 47.826 0.00 0.00 42.85 2.73
5487 7903 3.199946 TCCCAATGGAGAACATGGTAGTC 59.800 47.826 0.00 0.00 40.44 2.59
5488 7904 3.198068 CCAATGGAGAACATGGTAGTCG 58.802 50.000 0.00 0.00 40.44 4.18
5489 7905 3.118775 CCAATGGAGAACATGGTAGTCGA 60.119 47.826 0.00 0.00 40.44 4.20
5490 7906 3.802948 ATGGAGAACATGGTAGTCGAC 57.197 47.619 7.70 7.70 38.70 4.20
5491 7907 1.471287 TGGAGAACATGGTAGTCGACG 59.529 52.381 10.46 0.00 0.00 5.12
5492 7908 1.741706 GGAGAACATGGTAGTCGACGA 59.258 52.381 10.46 0.94 0.00 4.20
5493 7909 2.358267 GGAGAACATGGTAGTCGACGAT 59.642 50.000 10.46 0.00 0.00 3.73
5494 7910 3.548415 GGAGAACATGGTAGTCGACGATC 60.548 52.174 10.46 5.86 0.00 3.69
5495 7911 2.358267 AGAACATGGTAGTCGACGATCC 59.642 50.000 10.46 13.87 0.00 3.36
5496 7912 0.661552 ACATGGTAGTCGACGATCCG 59.338 55.000 10.46 1.92 0.00 4.18
5497 7913 0.040336 CATGGTAGTCGACGATCCGG 60.040 60.000 10.46 0.00 0.00 5.14
5498 7914 1.793134 ATGGTAGTCGACGATCCGGC 61.793 60.000 10.46 0.00 0.00 6.13
5515 7931 4.856801 CGCCAACCCCCTCATCCG 62.857 72.222 0.00 0.00 0.00 4.18
5517 7933 4.856801 CCAACCCCCTCATCCGCG 62.857 72.222 0.00 0.00 0.00 6.46
5522 7938 4.996434 CCCCTCATCCGCGCCATC 62.996 72.222 0.00 0.00 0.00 3.51
5523 7939 4.996434 CCCTCATCCGCGCCATCC 62.996 72.222 0.00 0.00 0.00 3.51
5524 7940 3.933722 CCTCATCCGCGCCATCCT 61.934 66.667 0.00 0.00 0.00 3.24
5525 7941 2.356793 CTCATCCGCGCCATCCTC 60.357 66.667 0.00 0.00 0.00 3.71
5526 7942 4.284860 TCATCCGCGCCATCCTCG 62.285 66.667 0.00 0.00 0.00 4.63
5534 7950 4.783621 GCCATCCTCGCTGGTGCA 62.784 66.667 0.00 0.00 39.64 4.57
5535 7951 2.191375 CCATCCTCGCTGGTGCAT 59.809 61.111 0.00 0.00 39.64 3.96
5536 7952 1.452651 CCATCCTCGCTGGTGCATT 60.453 57.895 0.00 0.00 39.64 3.56
5537 7953 1.721664 CCATCCTCGCTGGTGCATTG 61.722 60.000 0.00 0.00 39.64 2.82
5538 7954 0.745486 CATCCTCGCTGGTGCATTGA 60.745 55.000 0.00 0.00 39.64 2.57
5539 7955 0.035152 ATCCTCGCTGGTGCATTGAA 60.035 50.000 0.00 0.00 39.64 2.69
5540 7956 0.955428 TCCTCGCTGGTGCATTGAAC 60.955 55.000 0.00 0.00 39.64 3.18
5541 7957 1.503542 CTCGCTGGTGCATTGAACC 59.496 57.895 6.89 6.89 39.64 3.62
5542 7958 1.228094 TCGCTGGTGCATTGAACCA 60.228 52.632 15.96 15.96 45.49 3.67
5543 7959 0.608856 TCGCTGGTGCATTGAACCAT 60.609 50.000 17.14 0.00 46.43 3.55
5544 7960 0.457166 CGCTGGTGCATTGAACCATG 60.457 55.000 17.14 11.91 46.43 3.66
5545 7961 0.889994 GCTGGTGCATTGAACCATGA 59.110 50.000 17.14 0.00 46.43 3.07
5546 7962 1.403249 GCTGGTGCATTGAACCATGAC 60.403 52.381 17.14 6.44 46.43 3.06
5547 7963 1.203052 CTGGTGCATTGAACCATGACC 59.797 52.381 17.14 0.21 46.43 4.02
5548 7964 1.255882 GGTGCATTGAACCATGACCA 58.744 50.000 9.11 0.00 37.65 4.02
5549 7965 1.826720 GGTGCATTGAACCATGACCAT 59.173 47.619 9.11 0.00 37.65 3.55
5550 7966 2.159198 GGTGCATTGAACCATGACCATC 60.159 50.000 9.11 0.00 37.65 3.51
5551 7967 1.744522 TGCATTGAACCATGACCATCG 59.255 47.619 0.00 0.00 0.00 3.84
5552 7968 1.066002 GCATTGAACCATGACCATCGG 59.934 52.381 0.00 0.00 0.00 4.18
5553 7969 1.066002 CATTGAACCATGACCATCGGC 59.934 52.381 0.00 0.00 0.00 5.54
5554 7970 1.024046 TTGAACCATGACCATCGGCG 61.024 55.000 0.00 0.00 0.00 6.46
5555 7971 1.153449 GAACCATGACCATCGGCGA 60.153 57.895 13.87 13.87 0.00 5.54
5556 7972 1.153369 AACCATGACCATCGGCGAG 60.153 57.895 17.22 4.99 0.00 5.03
5557 7973 2.280389 CCATGACCATCGGCGAGG 60.280 66.667 17.22 16.35 0.00 4.63
5558 7974 2.969238 CATGACCATCGGCGAGGC 60.969 66.667 17.13 5.40 0.00 4.70
5559 7975 4.241555 ATGACCATCGGCGAGGCC 62.242 66.667 17.13 10.14 46.75 5.19
5588 8004 5.698741 CAATATATGGATAGGGTGAGGCA 57.301 43.478 0.00 0.00 0.00 4.75
5589 8005 5.678583 CAATATATGGATAGGGTGAGGCAG 58.321 45.833 0.00 0.00 0.00 4.85
5590 8006 3.567375 ATATGGATAGGGTGAGGCAGA 57.433 47.619 0.00 0.00 0.00 4.26
5591 8007 2.429933 ATGGATAGGGTGAGGCAGAT 57.570 50.000 0.00 0.00 0.00 2.90
5592 8008 1.427809 TGGATAGGGTGAGGCAGATG 58.572 55.000 0.00 0.00 0.00 2.90
5593 8009 0.036022 GGATAGGGTGAGGCAGATGC 59.964 60.000 0.00 0.00 41.14 3.91
5594 8010 0.320247 GATAGGGTGAGGCAGATGCG 60.320 60.000 0.00 0.00 43.26 4.73
5595 8011 1.050988 ATAGGGTGAGGCAGATGCGT 61.051 55.000 0.00 0.00 43.26 5.24
5596 8012 1.960040 TAGGGTGAGGCAGATGCGTG 61.960 60.000 4.52 0.00 43.26 5.34
5597 8013 2.265739 GGTGAGGCAGATGCGTGA 59.734 61.111 4.52 0.00 43.26 4.35
5598 8014 1.812922 GGTGAGGCAGATGCGTGAG 60.813 63.158 4.52 0.00 43.26 3.51
5599 8015 1.812922 GTGAGGCAGATGCGTGAGG 60.813 63.158 4.52 0.00 43.26 3.86
5600 8016 1.984026 TGAGGCAGATGCGTGAGGA 60.984 57.895 4.52 0.00 43.26 3.71
5601 8017 1.227205 GAGGCAGATGCGTGAGGAG 60.227 63.158 4.52 0.00 43.26 3.69
5602 8018 2.894387 GGCAGATGCGTGAGGAGC 60.894 66.667 0.00 0.00 43.26 4.70
5639 8055 4.728102 CGACGCCGCCTACAACCA 62.728 66.667 0.00 0.00 0.00 3.67
5640 8056 3.116531 GACGCCGCCTACAACCAC 61.117 66.667 0.00 0.00 0.00 4.16
5641 8057 4.692475 ACGCCGCCTACAACCACC 62.692 66.667 0.00 0.00 0.00 4.61
5642 8058 4.690719 CGCCGCCTACAACCACCA 62.691 66.667 0.00 0.00 0.00 4.17
5643 8059 2.045340 GCCGCCTACAACCACCAT 60.045 61.111 0.00 0.00 0.00 3.55
5644 8060 2.112815 GCCGCCTACAACCACCATC 61.113 63.158 0.00 0.00 0.00 3.51
5645 8061 1.602237 CCGCCTACAACCACCATCT 59.398 57.895 0.00 0.00 0.00 2.90
5646 8062 0.462047 CCGCCTACAACCACCATCTC 60.462 60.000 0.00 0.00 0.00 2.75
5647 8063 0.462047 CGCCTACAACCACCATCTCC 60.462 60.000 0.00 0.00 0.00 3.71
5648 8064 0.912486 GCCTACAACCACCATCTCCT 59.088 55.000 0.00 0.00 0.00 3.69
5649 8065 1.134371 GCCTACAACCACCATCTCCTC 60.134 57.143 0.00 0.00 0.00 3.71
5650 8066 1.486726 CCTACAACCACCATCTCCTCC 59.513 57.143 0.00 0.00 0.00 4.30
5651 8067 2.187958 CTACAACCACCATCTCCTCCA 58.812 52.381 0.00 0.00 0.00 3.86
5652 8068 0.987294 ACAACCACCATCTCCTCCAG 59.013 55.000 0.00 0.00 0.00 3.86
5653 8069 0.254178 CAACCACCATCTCCTCCAGG 59.746 60.000 0.00 0.00 0.00 4.45
5654 8070 0.119155 AACCACCATCTCCTCCAGGA 59.881 55.000 0.00 0.00 43.08 3.86
5668 8084 3.077556 AGGAGCACCTGTAGGCGG 61.078 66.667 0.22 0.00 45.92 6.13
5669 8085 3.075005 GGAGCACCTGTAGGCGGA 61.075 66.667 0.00 0.00 39.32 5.54
5670 8086 2.496817 GAGCACCTGTAGGCGGAG 59.503 66.667 0.00 0.00 39.32 4.63
5671 8087 3.077556 AGCACCTGTAGGCGGAGG 61.078 66.667 0.00 0.00 39.32 4.30
5672 8088 3.075005 GCACCTGTAGGCGGAGGA 61.075 66.667 6.51 0.00 39.32 3.71
5673 8089 3.082579 GCACCTGTAGGCGGAGGAG 62.083 68.421 6.51 0.51 39.32 3.69
5674 8090 2.760385 ACCTGTAGGCGGAGGAGC 60.760 66.667 6.51 0.00 39.32 4.70
5675 8091 2.759973 CCTGTAGGCGGAGGAGCA 60.760 66.667 0.00 0.00 39.27 4.26
5676 8092 2.790791 CCTGTAGGCGGAGGAGCAG 61.791 68.421 0.00 0.00 39.27 4.24
5677 8093 1.754621 CTGTAGGCGGAGGAGCAGA 60.755 63.158 0.00 0.00 39.27 4.26
5678 8094 1.075970 TGTAGGCGGAGGAGCAGAT 60.076 57.895 0.00 0.00 39.27 2.90
5679 8095 0.687757 TGTAGGCGGAGGAGCAGATT 60.688 55.000 0.00 0.00 39.27 2.40
5680 8096 0.249657 GTAGGCGGAGGAGCAGATTG 60.250 60.000 0.00 0.00 39.27 2.67
5681 8097 2.032860 TAGGCGGAGGAGCAGATTGC 62.033 60.000 0.00 0.00 45.46 3.56
5682 8098 2.899339 GCGGAGGAGCAGATTGCC 60.899 66.667 0.00 0.00 46.52 4.52
5683 8099 2.586245 CGGAGGAGCAGATTGCCA 59.414 61.111 0.00 0.00 46.52 4.92
5684 8100 1.817099 CGGAGGAGCAGATTGCCAC 60.817 63.158 0.00 0.00 46.52 5.01
5685 8101 1.817099 GGAGGAGCAGATTGCCACG 60.817 63.158 0.00 0.00 46.52 4.94
5686 8102 1.817099 GAGGAGCAGATTGCCACGG 60.817 63.158 0.00 0.00 46.52 4.94
5687 8103 2.244117 GAGGAGCAGATTGCCACGGA 62.244 60.000 0.00 0.00 46.52 4.69
5688 8104 1.817099 GGAGCAGATTGCCACGGAG 60.817 63.158 0.00 0.00 46.52 4.63
5689 8105 2.437359 AGCAGATTGCCACGGAGC 60.437 61.111 0.00 0.00 46.52 4.70
5690 8106 3.869272 GCAGATTGCCACGGAGCG 61.869 66.667 0.00 0.00 37.42 5.03
5691 8107 3.197790 CAGATTGCCACGGAGCGG 61.198 66.667 0.00 0.00 34.65 5.52
5692 8108 4.473520 AGATTGCCACGGAGCGGG 62.474 66.667 0.00 0.00 34.65 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
279 281 2.170397 TCCGTGTCATATGCTCATGGTT 59.830 45.455 24.60 0.00 38.79 3.67
293 295 0.370273 GTTGATGCGTGATCCGTGTC 59.630 55.000 5.66 5.07 39.32 3.67
296 298 1.019278 GTGGTTGATGCGTGATCCGT 61.019 55.000 5.66 0.00 39.32 4.69
400 406 0.698818 AAGAAAGAATGGAGGCGGGT 59.301 50.000 0.00 0.00 0.00 5.28
515 526 2.771639 CGGCGGATCTGAAGGACGA 61.772 63.158 5.48 0.00 0.00 4.20
785 796 4.200283 GAGACAGAGGCGAGGCGG 62.200 72.222 0.00 0.00 0.00 6.13
786 797 4.200283 GGAGACAGAGGCGAGGCG 62.200 72.222 0.00 0.00 0.00 5.52
969 1134 2.581409 ATTAGGGTTCGTCGCGCG 60.581 61.111 26.76 26.76 43.01 6.86
1050 1338 0.825840 GGAGAGCCGAGGTCATAGCT 60.826 60.000 0.00 0.00 38.56 3.32
1055 1343 3.663815 GAGGGGAGAGCCGAGGTCA 62.664 68.421 6.00 0.00 33.83 4.02
1283 1628 2.927856 TCCTCGGGCTTCAAGGCA 60.928 61.111 13.85 0.00 43.44 4.75
1288 1633 2.364317 CCTCCTCCTCGGGCTTCA 60.364 66.667 0.00 0.00 0.00 3.02
1471 1816 1.270839 ACGAGGTGTTGTCCATCTTGG 60.271 52.381 0.00 0.00 39.68 3.61
1476 1821 0.320421 CCGAACGAGGTGTTGTCCAT 60.320 55.000 0.00 0.00 42.09 3.41
1543 1888 3.859443 TGTGGTATAAACGCACGGTAAT 58.141 40.909 0.00 0.00 32.56 1.89
1559 1904 4.008074 AGAACACGAATTGAGATGTGGT 57.992 40.909 0.00 0.00 36.67 4.16
1604 1949 1.000052 TGTTCAACACCGCGACATCTA 60.000 47.619 8.23 0.00 0.00 1.98
1632 1977 2.165998 GCCAGCTTCAAATCCTTGAGT 58.834 47.619 0.00 0.00 42.48 3.41
1690 2090 4.764679 TGTCAAAATTCATCCTTCCACG 57.235 40.909 0.00 0.00 0.00 4.94
1875 2286 2.168521 ACCATACATCTTGTGACCCTCG 59.831 50.000 0.00 0.00 0.00 4.63
2212 3406 7.978414 TCTTTCTATGTTGAGCTCATACTTCTG 59.022 37.037 19.04 12.09 0.00 3.02
2355 3550 3.570125 TGCTCTCGTTATATCAGACAGGG 59.430 47.826 0.00 0.00 0.00 4.45
2391 3586 7.545265 GCATTAACAAATACTGATGCCAAGAAA 59.455 33.333 0.00 0.00 35.16 2.52
2516 3715 7.094248 TGTCTGCACAGCAATAAATTAGTTGAT 60.094 33.333 6.85 0.00 38.41 2.57
2585 3786 0.885879 AGAACACGTATGTCGGCTCA 59.114 50.000 0.00 0.00 44.69 4.26
2914 4208 5.935945 TGTGAGGAAAATGTTTCAGGACTA 58.064 37.500 3.35 0.00 0.00 2.59
2972 4266 7.415095 CCGTATGATGCTTCCTTCAAAAATGTA 60.415 37.037 0.00 0.00 0.00 2.29
3207 4503 8.918202 AGAGTAAATGTTGACAGTTTATGGAA 57.082 30.769 1.98 0.00 35.62 3.53
3317 4615 5.333645 CGATGCCAATCACAACTTCTATAGC 60.334 44.000 0.00 0.00 32.61 2.97
3529 4829 5.566230 GCAAGGAAACAAGAAGCTTCATCAT 60.566 40.000 27.57 12.20 0.00 2.45
3532 4832 3.638160 TGCAAGGAAACAAGAAGCTTCAT 59.362 39.130 27.57 14.17 0.00 2.57
3619 4927 1.750018 CGATGCAGATGCCACCCAA 60.750 57.895 1.72 0.00 41.18 4.12
3698 5006 7.489113 CACCATTCTAATGCTTAAACATTGTCC 59.511 37.037 13.20 0.00 40.43 4.02
3738 5046 1.595109 CAGACACTGCAGTTGCCGA 60.595 57.895 18.94 0.00 41.18 5.54
3747 5057 4.033990 TCTCGAATATCACAGACACTGC 57.966 45.455 0.00 0.00 34.37 4.40
3810 5120 9.265901 CGAAGTCATAGATCCAGAACAATAAAT 57.734 33.333 0.00 0.00 0.00 1.40
3938 5380 7.869800 ACACTTTGCTCTCTCTTAAAATTGAG 58.130 34.615 0.00 0.00 0.00 3.02
3951 5393 3.844577 ATGCATTGACACTTTGCTCTC 57.155 42.857 0.00 0.00 37.28 3.20
4256 5736 3.692101 ACACCGTTCAAGAATCACAACAA 59.308 39.130 0.00 0.00 0.00 2.83
4501 6771 9.702253 ACTCCTAACAAGATCTACTAGATGAAA 57.298 33.333 3.11 0.00 34.53 2.69
4515 6785 8.524487 GTTCTTAGATTCAGACTCCTAACAAGA 58.476 37.037 0.00 0.00 0.00 3.02
4743 7013 3.847671 TGTCATGTTGTGGTAAGTGGA 57.152 42.857 0.00 0.00 0.00 4.02
4773 7043 5.454187 CCCAGTTGTCAGGTTCTAGTAACAA 60.454 44.000 7.18 0.00 0.00 2.83
4806 7076 3.412386 CCAAAAGAAGGGTCCACTAGTG 58.588 50.000 16.34 16.34 0.00 2.74
4884 7157 0.826062 GCCAAGCCCAATATTGCAGT 59.174 50.000 10.11 0.00 0.00 4.40
5024 7299 2.889617 CCACGTAGGCATCCGACA 59.110 61.111 0.00 0.00 0.00 4.35
5079 7356 8.024285 GTCGTGGATGTTTTTGACCAAAATATA 58.976 33.333 8.52 0.49 36.58 0.86
5097 7512 1.821753 CTCTGTGAGAAGGTCGTGGAT 59.178 52.381 0.00 0.00 0.00 3.41
5140 7556 1.455383 AAGGTCAAAAGCTGGCGGTG 61.455 55.000 0.00 0.00 32.35 4.94
5253 7669 3.411517 AATGGTGGGAGGGCGGAG 61.412 66.667 0.00 0.00 0.00 4.63
5254 7670 3.727258 CAATGGTGGGAGGGCGGA 61.727 66.667 0.00 0.00 0.00 5.54
5256 7672 2.343475 ATAGCAATGGTGGGAGGGCG 62.343 60.000 0.00 0.00 0.00 6.13
5257 7673 0.771127 TATAGCAATGGTGGGAGGGC 59.229 55.000 0.00 0.00 0.00 5.19
5258 7674 4.927267 TTATATAGCAATGGTGGGAGGG 57.073 45.455 0.00 0.00 0.00 4.30
5259 7675 5.707298 CAGTTTATATAGCAATGGTGGGAGG 59.293 44.000 0.00 0.00 0.00 4.30
5260 7676 5.182001 GCAGTTTATATAGCAATGGTGGGAG 59.818 44.000 0.00 0.00 0.00 4.30
5261 7677 5.070001 GCAGTTTATATAGCAATGGTGGGA 58.930 41.667 0.00 0.00 0.00 4.37
5262 7678 5.048504 CAGCAGTTTATATAGCAATGGTGGG 60.049 44.000 12.41 0.00 32.60 4.61
5263 7679 5.563475 GCAGCAGTTTATATAGCAATGGTGG 60.563 44.000 17.92 6.99 35.75 4.61
5264 7680 5.455392 GCAGCAGTTTATATAGCAATGGTG 58.545 41.667 14.53 14.53 37.65 4.17
5265 7681 4.214119 CGCAGCAGTTTATATAGCAATGGT 59.786 41.667 0.00 0.00 0.00 3.55
5266 7682 4.715896 CGCAGCAGTTTATATAGCAATGG 58.284 43.478 0.00 0.00 0.00 3.16
5288 7704 4.864334 ACTGCGGCTATGGCTGGC 62.864 66.667 12.28 10.94 44.48 4.85
5289 7705 2.590007 GACTGCGGCTATGGCTGG 60.590 66.667 12.28 0.08 44.48 4.85
5290 7706 1.226686 GATGACTGCGGCTATGGCTG 61.227 60.000 5.34 5.34 46.87 4.85
5291 7707 1.070445 GATGACTGCGGCTATGGCT 59.930 57.895 0.00 0.00 38.73 4.75
5292 7708 0.318441 TAGATGACTGCGGCTATGGC 59.682 55.000 0.00 0.00 37.82 4.40
5293 7709 1.341209 TGTAGATGACTGCGGCTATGG 59.659 52.381 0.00 0.00 0.00 2.74
5294 7710 2.800881 TGTAGATGACTGCGGCTATG 57.199 50.000 0.00 0.00 0.00 2.23
5295 7711 2.232452 GGATGTAGATGACTGCGGCTAT 59.768 50.000 0.00 0.00 0.00 2.97
5296 7712 1.613925 GGATGTAGATGACTGCGGCTA 59.386 52.381 0.00 0.00 0.00 3.93
5297 7713 0.390860 GGATGTAGATGACTGCGGCT 59.609 55.000 0.00 0.00 0.00 5.52
5298 7714 0.104855 TGGATGTAGATGACTGCGGC 59.895 55.000 0.00 0.00 0.00 6.53
5299 7715 2.827800 ATGGATGTAGATGACTGCGG 57.172 50.000 0.00 0.00 0.00 5.69
5300 7716 3.062763 GGAATGGATGTAGATGACTGCG 58.937 50.000 0.00 0.00 0.00 5.18
5301 7717 3.072184 AGGGAATGGATGTAGATGACTGC 59.928 47.826 0.00 0.00 0.00 4.40
5302 7718 4.970860 AGGGAATGGATGTAGATGACTG 57.029 45.455 0.00 0.00 0.00 3.51
5303 7719 5.669447 AGAAAGGGAATGGATGTAGATGACT 59.331 40.000 0.00 0.00 0.00 3.41
5304 7720 5.934781 AGAAAGGGAATGGATGTAGATGAC 58.065 41.667 0.00 0.00 0.00 3.06
5305 7721 5.072329 GGAGAAAGGGAATGGATGTAGATGA 59.928 44.000 0.00 0.00 0.00 2.92
5306 7722 5.072872 AGGAGAAAGGGAATGGATGTAGATG 59.927 44.000 0.00 0.00 0.00 2.90
5307 7723 5.072872 CAGGAGAAAGGGAATGGATGTAGAT 59.927 44.000 0.00 0.00 0.00 1.98
5308 7724 4.410228 CAGGAGAAAGGGAATGGATGTAGA 59.590 45.833 0.00 0.00 0.00 2.59
5309 7725 4.164988 ACAGGAGAAAGGGAATGGATGTAG 59.835 45.833 0.00 0.00 0.00 2.74
5310 7726 4.111577 ACAGGAGAAAGGGAATGGATGTA 58.888 43.478 0.00 0.00 0.00 2.29
5311 7727 2.922283 ACAGGAGAAAGGGAATGGATGT 59.078 45.455 0.00 0.00 0.00 3.06
5312 7728 3.549794 GACAGGAGAAAGGGAATGGATG 58.450 50.000 0.00 0.00 0.00 3.51
5313 7729 2.511637 GGACAGGAGAAAGGGAATGGAT 59.488 50.000 0.00 0.00 0.00 3.41
5314 7730 1.916181 GGACAGGAGAAAGGGAATGGA 59.084 52.381 0.00 0.00 0.00 3.41
5315 7731 1.635487 TGGACAGGAGAAAGGGAATGG 59.365 52.381 0.00 0.00 0.00 3.16
5316 7732 2.040278 TGTGGACAGGAGAAAGGGAATG 59.960 50.000 0.00 0.00 0.00 2.67
5317 7733 2.040412 GTGTGGACAGGAGAAAGGGAAT 59.960 50.000 0.00 0.00 0.00 3.01
5318 7734 1.420138 GTGTGGACAGGAGAAAGGGAA 59.580 52.381 0.00 0.00 0.00 3.97
5319 7735 1.056660 GTGTGGACAGGAGAAAGGGA 58.943 55.000 0.00 0.00 0.00 4.20
5320 7736 0.036875 GGTGTGGACAGGAGAAAGGG 59.963 60.000 0.00 0.00 0.00 3.95
5321 7737 0.764890 TGGTGTGGACAGGAGAAAGG 59.235 55.000 0.00 0.00 0.00 3.11
5322 7738 1.417890 AGTGGTGTGGACAGGAGAAAG 59.582 52.381 0.00 0.00 0.00 2.62
5323 7739 1.507140 AGTGGTGTGGACAGGAGAAA 58.493 50.000 0.00 0.00 0.00 2.52
5324 7740 1.968493 GTAGTGGTGTGGACAGGAGAA 59.032 52.381 0.00 0.00 0.00 2.87
5325 7741 1.147191 AGTAGTGGTGTGGACAGGAGA 59.853 52.381 0.00 0.00 0.00 3.71
5326 7742 1.273606 CAGTAGTGGTGTGGACAGGAG 59.726 57.143 0.00 0.00 0.00 3.69
5327 7743 1.338107 CAGTAGTGGTGTGGACAGGA 58.662 55.000 0.00 0.00 0.00 3.86
5328 7744 0.320771 GCAGTAGTGGTGTGGACAGG 60.321 60.000 0.00 0.00 0.00 4.00
5329 7745 0.320771 GGCAGTAGTGGTGTGGACAG 60.321 60.000 0.00 0.00 0.00 3.51
5330 7746 1.752198 GGCAGTAGTGGTGTGGACA 59.248 57.895 0.00 0.00 0.00 4.02
5331 7747 1.003718 GGGCAGTAGTGGTGTGGAC 60.004 63.158 0.00 0.00 0.00 4.02
5332 7748 1.460497 TGGGCAGTAGTGGTGTGGA 60.460 57.895 0.00 0.00 0.00 4.02
5333 7749 1.302511 GTGGGCAGTAGTGGTGTGG 60.303 63.158 0.00 0.00 0.00 4.17
5334 7750 1.302511 GGTGGGCAGTAGTGGTGTG 60.303 63.158 0.00 0.00 0.00 3.82
5335 7751 1.133809 ATGGTGGGCAGTAGTGGTGT 61.134 55.000 0.00 0.00 0.00 4.16
5336 7752 0.677731 CATGGTGGGCAGTAGTGGTG 60.678 60.000 0.00 0.00 0.00 4.17
5337 7753 1.685224 CATGGTGGGCAGTAGTGGT 59.315 57.895 0.00 0.00 0.00 4.16
5338 7754 1.077501 CCATGGTGGGCAGTAGTGG 60.078 63.158 2.57 0.00 32.67 4.00
5339 7755 4.643795 CCATGGTGGGCAGTAGTG 57.356 61.111 2.57 0.00 32.67 2.74
5347 7763 2.124570 CGAGGAAGCCATGGTGGG 60.125 66.667 14.67 0.00 38.19 4.61
5348 7764 2.825836 GCGAGGAAGCCATGGTGG 60.826 66.667 14.67 0.00 41.55 4.61
5349 7765 3.197790 CGCGAGGAAGCCATGGTG 61.198 66.667 14.67 0.00 0.00 4.17
5351 7767 4.845580 AGCGCGAGGAAGCCATGG 62.846 66.667 12.10 7.63 0.00 3.66
5352 7768 3.267860 GAGCGCGAGGAAGCCATG 61.268 66.667 12.10 0.00 0.00 3.66
5353 7769 4.537433 GGAGCGCGAGGAAGCCAT 62.537 66.667 12.10 0.00 0.00 4.40
5367 7783 3.452786 TCCCGAAGAGCGCTGGAG 61.453 66.667 18.48 2.77 39.11 3.86
5368 7784 3.760035 GTCCCGAAGAGCGCTGGA 61.760 66.667 18.48 12.88 39.11 3.86
5388 7804 4.651008 TTGTGGTCCGTCGTCCGC 62.651 66.667 9.38 9.38 34.38 5.54
5389 7805 2.430244 CTTGTGGTCCGTCGTCCG 60.430 66.667 0.00 0.00 0.00 4.79
5390 7806 2.048503 CCTTGTGGTCCGTCGTCC 60.049 66.667 0.00 0.00 0.00 4.79
5391 7807 1.080705 CTCCTTGTGGTCCGTCGTC 60.081 63.158 0.00 0.00 34.23 4.20
5392 7808 0.898789 ATCTCCTTGTGGTCCGTCGT 60.899 55.000 0.00 0.00 34.23 4.34
5393 7809 0.458543 CATCTCCTTGTGGTCCGTCG 60.459 60.000 0.00 0.00 34.23 5.12
5394 7810 0.108138 CCATCTCCTTGTGGTCCGTC 60.108 60.000 0.00 0.00 34.23 4.79
5395 7811 1.983224 CCATCTCCTTGTGGTCCGT 59.017 57.895 0.00 0.00 34.23 4.69
5396 7812 1.450312 GCCATCTCCTTGTGGTCCG 60.450 63.158 0.00 0.00 37.81 4.79
5397 7813 0.393537 CTGCCATCTCCTTGTGGTCC 60.394 60.000 0.00 0.00 37.81 4.46
5398 7814 1.028868 GCTGCCATCTCCTTGTGGTC 61.029 60.000 0.00 0.00 37.81 4.02
5399 7815 1.001641 GCTGCCATCTCCTTGTGGT 60.002 57.895 0.00 0.00 37.81 4.16
5400 7816 1.751927 GGCTGCCATCTCCTTGTGG 60.752 63.158 15.17 0.00 38.55 4.17
5401 7817 0.395311 ATGGCTGCCATCTCCTTGTG 60.395 55.000 27.95 0.00 40.74 3.33
5402 7818 0.333993 AATGGCTGCCATCTCCTTGT 59.666 50.000 32.60 13.97 44.40 3.16
5403 7819 0.744874 CAATGGCTGCCATCTCCTTG 59.255 55.000 32.60 23.21 44.40 3.61
5404 7820 1.041447 GCAATGGCTGCCATCTCCTT 61.041 55.000 32.60 16.20 44.40 3.36
5405 7821 1.455217 GCAATGGCTGCCATCTCCT 60.455 57.895 32.60 15.86 44.40 3.69
5406 7822 3.126528 GCAATGGCTGCCATCTCC 58.873 61.111 32.60 19.72 44.40 3.71
5416 7832 2.895372 CCGGTCGGTAGCAATGGC 60.895 66.667 0.55 0.00 41.61 4.40
5417 7833 2.895372 GCCGGTCGGTAGCAATGG 60.895 66.667 11.25 0.00 37.65 3.16
5418 7834 2.173669 CAGCCGGTCGGTAGCAATG 61.174 63.158 11.25 0.00 37.65 2.82
5419 7835 2.186903 CAGCCGGTCGGTAGCAAT 59.813 61.111 11.25 0.00 37.65 3.56
5420 7836 4.077184 CCAGCCGGTCGGTAGCAA 62.077 66.667 11.25 0.00 37.65 3.91
5446 7862 3.518998 ATCGTCGTCCTCCGGCTG 61.519 66.667 0.00 0.00 39.61 4.85
5447 7863 3.518998 CATCGTCGTCCTCCGGCT 61.519 66.667 0.00 0.00 39.61 5.52
5448 7864 3.753070 GACATCGTCGTCCTCCGGC 62.753 68.421 0.00 0.00 37.97 6.13
5449 7865 2.408022 GACATCGTCGTCCTCCGG 59.592 66.667 0.00 0.00 37.11 5.14
5455 7871 0.174845 TCCATTGGGACATCGTCGTC 59.825 55.000 2.09 0.00 38.64 4.20
5456 7872 0.175760 CTCCATTGGGACATCGTCGT 59.824 55.000 2.09 0.00 38.64 4.34
5457 7873 0.459899 TCTCCATTGGGACATCGTCG 59.540 55.000 2.09 0.00 38.64 5.12
5458 7874 2.280628 GTTCTCCATTGGGACATCGTC 58.719 52.381 2.09 0.00 38.64 4.20
5459 7875 1.628340 TGTTCTCCATTGGGACATCGT 59.372 47.619 2.09 0.00 38.64 3.73
5460 7876 2.401583 TGTTCTCCATTGGGACATCG 57.598 50.000 2.09 0.00 38.64 3.84
5461 7877 2.954318 CCATGTTCTCCATTGGGACATC 59.046 50.000 13.70 0.36 38.64 3.06
5462 7878 2.312741 ACCATGTTCTCCATTGGGACAT 59.687 45.455 2.09 8.36 38.64 3.06
5463 7879 1.710244 ACCATGTTCTCCATTGGGACA 59.290 47.619 2.09 6.41 38.64 4.02
5464 7880 2.514458 ACCATGTTCTCCATTGGGAC 57.486 50.000 2.09 0.71 38.64 4.46
5465 7881 3.189606 ACTACCATGTTCTCCATTGGGA 58.810 45.455 2.09 0.00 42.29 4.37
5466 7882 3.545703 GACTACCATGTTCTCCATTGGG 58.454 50.000 2.09 0.00 0.00 4.12
5467 7883 3.118775 TCGACTACCATGTTCTCCATTGG 60.119 47.826 0.00 0.00 0.00 3.16
5468 7884 3.865745 GTCGACTACCATGTTCTCCATTG 59.134 47.826 8.70 0.00 0.00 2.82
5469 7885 3.428999 CGTCGACTACCATGTTCTCCATT 60.429 47.826 14.70 0.00 0.00 3.16
5470 7886 2.099263 CGTCGACTACCATGTTCTCCAT 59.901 50.000 14.70 0.00 0.00 3.41
5471 7887 1.471287 CGTCGACTACCATGTTCTCCA 59.529 52.381 14.70 0.00 0.00 3.86
5472 7888 1.741706 TCGTCGACTACCATGTTCTCC 59.258 52.381 14.70 0.00 0.00 3.71
5473 7889 3.548415 GGATCGTCGACTACCATGTTCTC 60.548 52.174 14.70 0.00 0.00 2.87
5474 7890 2.358267 GGATCGTCGACTACCATGTTCT 59.642 50.000 14.70 0.00 0.00 3.01
5475 7891 2.728922 GGATCGTCGACTACCATGTTC 58.271 52.381 14.70 1.58 0.00 3.18
5476 7892 1.065102 CGGATCGTCGACTACCATGTT 59.935 52.381 14.70 0.00 0.00 2.71
5477 7893 0.661552 CGGATCGTCGACTACCATGT 59.338 55.000 14.70 0.00 0.00 3.21
5478 7894 0.040336 CCGGATCGTCGACTACCATG 60.040 60.000 14.70 4.70 0.00 3.66
5479 7895 1.793134 GCCGGATCGTCGACTACCAT 61.793 60.000 14.70 0.00 0.00 3.55
5480 7896 2.475466 GCCGGATCGTCGACTACCA 61.475 63.158 14.70 0.00 0.00 3.25
5481 7897 2.330745 GCCGGATCGTCGACTACC 59.669 66.667 14.70 12.43 0.00 3.18
5482 7898 2.052414 CGCCGGATCGTCGACTAC 60.052 66.667 14.70 4.57 0.00 2.73
5483 7899 3.945434 GCGCCGGATCGTCGACTA 61.945 66.667 14.70 2.39 0.00 2.59
5498 7914 4.856801 CGGATGAGGGGGTTGGCG 62.857 72.222 0.00 0.00 0.00 5.69
5500 7916 4.856801 CGCGGATGAGGGGGTTGG 62.857 72.222 0.00 0.00 0.00 3.77
5505 7921 4.996434 GATGGCGCGGATGAGGGG 62.996 72.222 8.83 0.00 0.00 4.79
5506 7922 4.996434 GGATGGCGCGGATGAGGG 62.996 72.222 8.83 0.00 0.00 4.30
5507 7923 3.873026 GAGGATGGCGCGGATGAGG 62.873 68.421 8.83 0.00 0.00 3.86
5508 7924 2.356793 GAGGATGGCGCGGATGAG 60.357 66.667 8.83 0.00 0.00 2.90
5509 7925 4.284860 CGAGGATGGCGCGGATGA 62.285 66.667 8.83 0.00 0.00 2.92
5517 7933 4.783621 TGCACCAGCGAGGATGGC 62.784 66.667 5.19 6.36 43.70 4.40
5518 7934 1.452651 AATGCACCAGCGAGGATGG 60.453 57.895 5.19 0.00 45.59 3.51
5519 7935 0.745486 TCAATGCACCAGCGAGGATG 60.745 55.000 5.19 1.73 46.23 3.51
5520 7936 0.035152 TTCAATGCACCAGCGAGGAT 60.035 50.000 5.19 0.00 46.23 3.24
5521 7937 0.955428 GTTCAATGCACCAGCGAGGA 60.955 55.000 5.19 0.00 46.23 3.71
5522 7938 1.503542 GTTCAATGCACCAGCGAGG 59.496 57.895 0.00 0.00 46.23 4.63
5523 7939 1.236616 TGGTTCAATGCACCAGCGAG 61.237 55.000 0.00 0.00 46.23 5.03
5524 7940 1.228094 TGGTTCAATGCACCAGCGA 60.228 52.632 0.00 0.00 46.23 4.93
5525 7941 3.353600 TGGTTCAATGCACCAGCG 58.646 55.556 0.00 0.00 46.23 5.18
5529 7945 1.255882 TGGTCATGGTTCAATGCACC 58.744 50.000 0.00 0.00 32.68 5.01
5530 7946 2.478370 CGATGGTCATGGTTCAATGCAC 60.478 50.000 0.00 0.00 0.00 4.57
5531 7947 1.744522 CGATGGTCATGGTTCAATGCA 59.255 47.619 0.00 0.00 0.00 3.96
5532 7948 1.066002 CCGATGGTCATGGTTCAATGC 59.934 52.381 0.00 0.00 0.00 3.56
5533 7949 1.066002 GCCGATGGTCATGGTTCAATG 59.934 52.381 0.00 0.00 0.00 2.82
5534 7950 1.392589 GCCGATGGTCATGGTTCAAT 58.607 50.000 0.00 0.00 0.00 2.57
5535 7951 1.024046 CGCCGATGGTCATGGTTCAA 61.024 55.000 0.00 0.00 0.00 2.69
5536 7952 1.449423 CGCCGATGGTCATGGTTCA 60.449 57.895 0.00 0.00 0.00 3.18
5537 7953 1.153449 TCGCCGATGGTCATGGTTC 60.153 57.895 0.00 0.00 0.00 3.62
5538 7954 1.153369 CTCGCCGATGGTCATGGTT 60.153 57.895 0.00 0.00 0.00 3.67
5539 7955 2.501128 CTCGCCGATGGTCATGGT 59.499 61.111 0.00 0.00 0.00 3.55
5540 7956 2.280389 CCTCGCCGATGGTCATGG 60.280 66.667 0.00 0.00 0.00 3.66
5541 7957 2.969238 GCCTCGCCGATGGTCATG 60.969 66.667 0.00 0.00 0.00 3.07
5542 7958 4.241555 GGCCTCGCCGATGGTCAT 62.242 66.667 0.00 0.00 39.62 3.06
5557 7973 0.037590 TCCATATATTGGGCACGGGC 59.962 55.000 0.00 0.00 46.45 6.13
5558 7974 2.806945 ATCCATATATTGGGCACGGG 57.193 50.000 4.69 0.00 46.45 5.28
5559 7975 3.433598 CCCTATCCATATATTGGGCACGG 60.434 52.174 4.69 0.00 46.45 4.94
5560 7976 3.199946 ACCCTATCCATATATTGGGCACG 59.800 47.826 5.24 0.00 46.45 5.34
5561 7977 4.227300 TCACCCTATCCATATATTGGGCAC 59.773 45.833 5.24 0.00 46.45 5.01
5562 7978 4.443658 TCACCCTATCCATATATTGGGCA 58.556 43.478 5.24 0.00 46.45 5.36
5563 7979 4.141390 CCTCACCCTATCCATATATTGGGC 60.141 50.000 5.24 0.00 46.45 5.36
5564 7980 4.141390 GCCTCACCCTATCCATATATTGGG 60.141 50.000 4.06 4.06 46.45 4.12
5566 7982 5.426509 TCTGCCTCACCCTATCCATATATTG 59.573 44.000 0.00 0.00 0.00 1.90
5567 7983 5.603750 TCTGCCTCACCCTATCCATATATT 58.396 41.667 0.00 0.00 0.00 1.28
5568 7984 5.226504 TCTGCCTCACCCTATCCATATAT 57.773 43.478 0.00 0.00 0.00 0.86
5569 7985 4.692523 TCTGCCTCACCCTATCCATATA 57.307 45.455 0.00 0.00 0.00 0.86
5570 7986 3.567375 TCTGCCTCACCCTATCCATAT 57.433 47.619 0.00 0.00 0.00 1.78
5571 7987 3.176411 CATCTGCCTCACCCTATCCATA 58.824 50.000 0.00 0.00 0.00 2.74
5572 7988 1.983691 CATCTGCCTCACCCTATCCAT 59.016 52.381 0.00 0.00 0.00 3.41
5573 7989 1.427809 CATCTGCCTCACCCTATCCA 58.572 55.000 0.00 0.00 0.00 3.41
5574 7990 0.036022 GCATCTGCCTCACCCTATCC 59.964 60.000 0.00 0.00 34.31 2.59
5575 7991 0.320247 CGCATCTGCCTCACCCTATC 60.320 60.000 0.00 0.00 37.91 2.08
5576 7992 1.050988 ACGCATCTGCCTCACCCTAT 61.051 55.000 0.00 0.00 37.91 2.57
5577 7993 1.685765 ACGCATCTGCCTCACCCTA 60.686 57.895 0.00 0.00 37.91 3.53
5578 7994 3.005539 ACGCATCTGCCTCACCCT 61.006 61.111 0.00 0.00 37.91 4.34
5579 7995 2.821366 CACGCATCTGCCTCACCC 60.821 66.667 0.00 0.00 37.91 4.61
5580 7996 1.812922 CTCACGCATCTGCCTCACC 60.813 63.158 0.00 0.00 37.91 4.02
5581 7997 1.812922 CCTCACGCATCTGCCTCAC 60.813 63.158 0.00 0.00 37.91 3.51
5582 7998 1.953231 CTCCTCACGCATCTGCCTCA 61.953 60.000 0.00 0.00 37.91 3.86
5583 7999 1.227205 CTCCTCACGCATCTGCCTC 60.227 63.158 0.00 0.00 37.91 4.70
5584 8000 2.898738 CTCCTCACGCATCTGCCT 59.101 61.111 0.00 0.00 37.91 4.75
5585 8001 2.894387 GCTCCTCACGCATCTGCC 60.894 66.667 0.00 0.00 37.91 4.85
5586 8002 2.125391 TGCTCCTCACGCATCTGC 60.125 61.111 0.00 0.00 37.78 4.26
5587 8003 0.390866 AACTGCTCCTCACGCATCTG 60.391 55.000 0.00 0.00 36.70 2.90
5588 8004 0.108424 GAACTGCTCCTCACGCATCT 60.108 55.000 0.00 0.00 36.70 2.90
5589 8005 1.086634 GGAACTGCTCCTCACGCATC 61.087 60.000 0.00 0.00 41.61 3.91
5590 8006 1.078848 GGAACTGCTCCTCACGCAT 60.079 57.895 0.00 0.00 41.61 4.73
5591 8007 2.343758 GGAACTGCTCCTCACGCA 59.656 61.111 0.00 0.00 41.61 5.24
5592 8008 2.811317 CGGAACTGCTCCTCACGC 60.811 66.667 0.00 0.00 42.85 5.34
5593 8009 2.125912 CCGGAACTGCTCCTCACG 60.126 66.667 0.00 0.00 42.85 4.35
5594 8010 2.435059 GCCGGAACTGCTCCTCAC 60.435 66.667 5.05 0.00 42.85 3.51
5595 8011 2.922503 TGCCGGAACTGCTCCTCA 60.923 61.111 5.05 0.00 42.85 3.86
5596 8012 2.125350 CTGCCGGAACTGCTCCTC 60.125 66.667 5.05 0.00 42.85 3.71
5597 8013 3.710722 CCTGCCGGAACTGCTCCT 61.711 66.667 5.05 0.00 42.85 3.69
5622 8038 4.728102 TGGTTGTAGGCGGCGTCG 62.728 66.667 4.29 4.29 39.81 5.12
5623 8039 3.116531 GTGGTTGTAGGCGGCGTC 61.117 66.667 1.71 1.71 0.00 5.19
5624 8040 4.692475 GGTGGTTGTAGGCGGCGT 62.692 66.667 9.37 0.00 0.00 5.68
5625 8041 3.969250 ATGGTGGTTGTAGGCGGCG 62.969 63.158 0.51 0.51 0.00 6.46
5626 8042 2.045340 ATGGTGGTTGTAGGCGGC 60.045 61.111 0.00 0.00 0.00 6.53
5627 8043 0.462047 GAGATGGTGGTTGTAGGCGG 60.462 60.000 0.00 0.00 0.00 6.13
5628 8044 0.462047 GGAGATGGTGGTTGTAGGCG 60.462 60.000 0.00 0.00 0.00 5.52
5629 8045 0.912486 AGGAGATGGTGGTTGTAGGC 59.088 55.000 0.00 0.00 0.00 3.93
5630 8046 1.486726 GGAGGAGATGGTGGTTGTAGG 59.513 57.143 0.00 0.00 0.00 3.18
5631 8047 2.169352 CTGGAGGAGATGGTGGTTGTAG 59.831 54.545 0.00 0.00 0.00 2.74
5632 8048 2.187958 CTGGAGGAGATGGTGGTTGTA 58.812 52.381 0.00 0.00 0.00 2.41
5633 8049 0.987294 CTGGAGGAGATGGTGGTTGT 59.013 55.000 0.00 0.00 0.00 3.32
5634 8050 0.254178 CCTGGAGGAGATGGTGGTTG 59.746 60.000 0.00 0.00 37.39 3.77
5635 8051 0.119155 TCCTGGAGGAGATGGTGGTT 59.881 55.000 0.00 0.00 39.78 3.67
5636 8052 1.790541 TCCTGGAGGAGATGGTGGT 59.209 57.895 0.00 0.00 39.78 4.16
5637 8053 4.816109 TCCTGGAGGAGATGGTGG 57.184 61.111 0.00 0.00 39.78 4.61
5651 8067 3.077556 CCGCCTACAGGTGCTCCT 61.078 66.667 0.18 0.18 46.37 3.69
5652 8068 3.075005 TCCGCCTACAGGTGCTCC 61.075 66.667 3.14 0.00 44.11 4.70
5653 8069 2.496817 CTCCGCCTACAGGTGCTC 59.503 66.667 3.14 0.00 44.11 4.26
5654 8070 3.077556 CCTCCGCCTACAGGTGCT 61.078 66.667 3.14 0.00 44.11 4.40
5655 8071 3.075005 TCCTCCGCCTACAGGTGC 61.075 66.667 3.14 0.00 44.11 5.01
5656 8072 3.082579 GCTCCTCCGCCTACAGGTG 62.083 68.421 1.61 1.61 45.02 4.00
5657 8073 2.760385 GCTCCTCCGCCTACAGGT 60.760 66.667 0.00 0.00 37.57 4.00
5658 8074 2.759973 TGCTCCTCCGCCTACAGG 60.760 66.667 0.00 0.00 38.53 4.00
5659 8075 1.112315 ATCTGCTCCTCCGCCTACAG 61.112 60.000 0.00 0.00 0.00 2.74
5660 8076 0.687757 AATCTGCTCCTCCGCCTACA 60.688 55.000 0.00 0.00 0.00 2.74
5661 8077 0.249657 CAATCTGCTCCTCCGCCTAC 60.250 60.000 0.00 0.00 0.00 3.18
5662 8078 2.032860 GCAATCTGCTCCTCCGCCTA 62.033 60.000 0.00 0.00 40.96 3.93
5663 8079 2.906458 CAATCTGCTCCTCCGCCT 59.094 61.111 0.00 0.00 0.00 5.52
5664 8080 2.899339 GCAATCTGCTCCTCCGCC 60.899 66.667 0.00 0.00 40.96 6.13
5665 8081 2.899339 GGCAATCTGCTCCTCCGC 60.899 66.667 0.00 0.00 44.28 5.54
5666 8082 1.817099 GTGGCAATCTGCTCCTCCG 60.817 63.158 0.00 0.00 44.28 4.63
5667 8083 1.817099 CGTGGCAATCTGCTCCTCC 60.817 63.158 0.00 0.00 44.28 4.30
5668 8084 1.817099 CCGTGGCAATCTGCTCCTC 60.817 63.158 0.00 0.00 44.28 3.71
5669 8085 2.249413 CTCCGTGGCAATCTGCTCCT 62.249 60.000 0.00 0.00 44.28 3.69
5670 8086 1.817099 CTCCGTGGCAATCTGCTCC 60.817 63.158 0.00 0.00 44.28 4.70
5671 8087 2.467826 GCTCCGTGGCAATCTGCTC 61.468 63.158 0.00 0.00 44.28 4.26
5672 8088 2.437359 GCTCCGTGGCAATCTGCT 60.437 61.111 0.00 0.00 44.28 4.24
5673 8089 3.869272 CGCTCCGTGGCAATCTGC 61.869 66.667 0.00 0.00 44.08 4.26
5674 8090 3.197790 CCGCTCCGTGGCAATCTG 61.198 66.667 0.00 0.00 0.00 2.90
5675 8091 4.473520 CCCGCTCCGTGGCAATCT 62.474 66.667 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.