Multiple sequence alignment - TraesCS2B01G586000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G586000 chr2B 100.000 2594 0 0 1 2594 772818717 772821310 0.000000e+00 4791.0
1 TraesCS2B01G586000 chr2B 95.152 165 8 0 1861 2025 203777160 203777324 7.120000e-66 261.0
2 TraesCS2B01G586000 chrUn 88.650 1304 122 18 276 1561 82411291 82409996 0.000000e+00 1565.0
3 TraesCS2B01G586000 chrUn 83.306 599 59 22 2023 2592 82409240 82408654 4.950000e-142 514.0
4 TraesCS2B01G586000 chrUn 93.478 276 18 0 4 279 82411602 82411327 6.680000e-111 411.0
5 TraesCS2B01G586000 chrUn 93.750 176 9 2 1857 2031 74119618 74119444 1.980000e-66 263.0
6 TraesCS2B01G586000 chr7B 96.341 164 6 0 1861 2024 88655766 88655929 1.180000e-68 270.0
7 TraesCS2B01G586000 chr7B 91.620 179 13 2 1861 2037 744022540 744022362 1.990000e-61 246.0
8 TraesCS2B01G586000 chr7A 85.271 258 37 1 339 596 40899515 40899259 5.500000e-67 265.0
9 TraesCS2B01G586000 chr6B 93.605 172 9 2 1855 2024 226362651 226362480 3.310000e-64 255.0
10 TraesCS2B01G586000 chr5A 93.567 171 9 2 1858 2027 670399324 670399155 1.190000e-63 254.0
11 TraesCS2B01G586000 chr5B 91.398 186 12 4 1845 2028 499373900 499374083 4.290000e-63 252.0
12 TraesCS2B01G586000 chr5B 92.571 175 11 2 1861 2034 276913745 276913572 1.540000e-62 250.0
13 TraesCS2B01G586000 chr2D 92.614 176 10 3 1853 2027 87409102 87409275 1.540000e-62 250.0
14 TraesCS2B01G586000 chr6D 77.407 270 59 2 1296 1563 36060782 36060513 2.670000e-35 159.0
15 TraesCS2B01G586000 chr3D 77.561 205 44 2 4 207 393059515 393059718 3.510000e-24 122.0
16 TraesCS2B01G586000 chr5D 96.970 33 1 0 1558 1590 60242340 60242308 3.610000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G586000 chr2B 772818717 772821310 2593 False 4791 4791 100.000 1 2594 1 chr2B.!!$F2 2593
1 TraesCS2B01G586000 chrUn 82408654 82411602 2948 True 830 1565 88.478 4 2592 3 chrUn.!!$R2 2588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
641 693 0.032615 AAGGGGTGTCTGTGGCAAAA 60.033 50.0 0.0 0.0 0.0 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1812 2324 0.031994 GAAACCCATGGTGCACACAC 59.968 55.0 20.43 1.36 46.66 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.524095 TTGATGTGGACAAATGGGAGT 57.476 42.857 0.00 0.00 0.00 3.85
34 35 2.976185 TGTGGACAAATGGGAGTAGTCA 59.024 45.455 0.00 0.00 0.00 3.41
40 41 3.264193 ACAAATGGGAGTAGTCAGATGCA 59.736 43.478 0.00 0.00 0.00 3.96
41 42 3.834489 AATGGGAGTAGTCAGATGCAG 57.166 47.619 0.00 0.00 0.00 4.41
44 45 3.291584 TGGGAGTAGTCAGATGCAGTAG 58.708 50.000 0.00 0.00 0.00 2.57
63 64 2.250924 AGCAGTTCTTTGGGGATTTGG 58.749 47.619 0.00 0.00 0.00 3.28
96 97 5.548406 ACATGACCTACAGAACCAACTTAC 58.452 41.667 0.00 0.00 0.00 2.34
110 111 4.588528 ACCAACTTACATGACATGCCTTTT 59.411 37.500 15.49 1.65 0.00 2.27
141 142 5.476091 TGTTGGGGTAAACAATCATTTCC 57.524 39.130 0.00 0.00 37.12 3.13
158 159 7.320384 TCATTTCCAGATCATTATCCTAGCA 57.680 36.000 0.00 0.00 31.98 3.49
161 162 4.152647 TCCAGATCATTATCCTAGCACGT 58.847 43.478 0.00 0.00 31.98 4.49
163 164 4.262207 CCAGATCATTATCCTAGCACGTGT 60.262 45.833 18.38 6.65 31.98 4.49
199 200 5.976458 TGAGCAGGTTGAAAGTTTTGAATT 58.024 33.333 0.00 0.00 0.00 2.17
270 271 9.379791 GAACAATACTAACAGGTAAACATAGCT 57.620 33.333 0.00 0.00 0.00 3.32
279 280 5.249852 ACAGGTAAACATAGCTTCCCAAGTA 59.750 40.000 0.00 0.00 0.00 2.24
280 281 5.817816 CAGGTAAACATAGCTTCCCAAGTAG 59.182 44.000 0.00 0.00 0.00 2.57
344 384 6.208988 TGTGCACTTTGTACATACCAAAAA 57.791 33.333 19.41 0.00 38.04 1.94
393 433 4.616181 GTGTACCTTGATATTGTGCACC 57.384 45.455 15.69 0.00 38.96 5.01
394 434 3.063452 GTGTACCTTGATATTGTGCACCG 59.937 47.826 15.69 0.00 38.96 4.94
424 464 1.811679 GGCACGTGCTAGAGAAGGC 60.812 63.158 36.84 15.57 41.70 4.35
446 486 0.469892 AAGAAACCTTGGGGCCACTG 60.470 55.000 6.53 0.00 35.63 3.66
451 491 1.002134 CCTTGGGGCCACTGTACAG 60.002 63.158 21.44 21.44 0.00 2.74
460 500 3.219281 GGCCACTGTACAGGAAAAAGAA 58.781 45.455 26.12 0.00 0.00 2.52
470 510 6.486657 TGTACAGGAAAAAGAATGACTTCCAG 59.513 38.462 0.00 0.00 39.91 3.86
484 524 2.912956 ACTTCCAGGCAGAGTTCCATAA 59.087 45.455 0.00 0.00 0.00 1.90
501 541 4.398988 TCCATAAGGTTGTGAATCACATGC 59.601 41.667 17.48 12.57 44.16 4.06
509 549 6.714810 AGGTTGTGAATCACATGCTAACTAAA 59.285 34.615 17.48 0.00 44.16 1.85
511 551 7.308589 GGTTGTGAATCACATGCTAACTAAAGT 60.309 37.037 17.48 0.00 44.16 2.66
519 559 7.639039 TCACATGCTAACTAAAGTTGAGTTTG 58.361 34.615 10.99 10.17 38.16 2.93
523 563 7.478520 TGCTAACTAAAGTTGAGTTTGAGAC 57.521 36.000 16.18 5.16 38.16 3.36
527 567 5.675538 ACTAAAGTTGAGTTTGAGACAGCT 58.324 37.500 0.00 0.00 0.00 4.24
532 572 3.558931 TGAGTTTGAGACAGCTTGGAA 57.441 42.857 0.00 0.00 0.00 3.53
548 596 4.990257 CTTGGAACATGCTGGTTGATAAG 58.010 43.478 0.00 0.00 39.30 1.73
549 597 4.032960 TGGAACATGCTGGTTGATAAGT 57.967 40.909 0.00 0.00 0.00 2.24
551 599 5.754782 TGGAACATGCTGGTTGATAAGTAT 58.245 37.500 0.00 0.00 0.00 2.12
577 625 8.421249 AATTTGAGAAACCATCCTTACATGAA 57.579 30.769 0.00 0.00 0.00 2.57
597 645 5.297547 TGAACCAGATCTATGAAATACGCC 58.702 41.667 0.00 0.00 0.00 5.68
606 654 0.609151 TGAAATACGCCCGAAGTGGA 59.391 50.000 0.00 0.00 42.00 4.02
612 660 1.281656 CGCCCGAAGTGGACAAAAC 59.718 57.895 0.00 0.00 42.00 2.43
623 671 6.459024 CGAAGTGGACAAAACCATACTTCAAA 60.459 38.462 13.32 0.00 40.20 2.69
627 675 4.021456 GGACAAAACCATACTTCAAAGGGG 60.021 45.833 0.00 0.00 0.00 4.79
628 676 4.552674 ACAAAACCATACTTCAAAGGGGT 58.447 39.130 0.00 0.00 32.71 4.95
629 677 4.343814 ACAAAACCATACTTCAAAGGGGTG 59.656 41.667 4.47 0.00 32.06 4.61
634 686 3.244911 CCATACTTCAAAGGGGTGTCTGT 60.245 47.826 0.00 0.00 0.00 3.41
636 688 1.133792 ACTTCAAAGGGGTGTCTGTGG 60.134 52.381 0.00 0.00 0.00 4.17
641 693 0.032615 AAGGGGTGTCTGTGGCAAAA 60.033 50.000 0.00 0.00 0.00 2.44
643 695 0.318120 GGGGTGTCTGTGGCAAAATG 59.682 55.000 0.00 0.00 0.00 2.32
655 707 4.041723 GTGGCAAAATGACAAGTACACAC 58.958 43.478 0.00 0.00 36.98 3.82
656 708 3.242903 TGGCAAAATGACAAGTACACACG 60.243 43.478 0.00 0.00 28.38 4.49
657 709 3.296628 GCAAAATGACAAGTACACACGG 58.703 45.455 0.00 0.00 0.00 4.94
660 712 2.472695 ATGACAAGTACACACGGCAT 57.527 45.000 0.00 0.00 0.00 4.40
661 713 2.248280 TGACAAGTACACACGGCATT 57.752 45.000 0.00 0.00 0.00 3.56
667 719 1.618837 AGTACACACGGCATTGAGAGT 59.381 47.619 0.00 0.00 0.00 3.24
673 725 0.593128 ACGGCATTGAGAGTGCAAAC 59.407 50.000 0.00 0.00 44.25 2.93
699 751 1.130561 GTTCAAGTCTTACATGCCGCC 59.869 52.381 0.00 0.00 0.00 6.13
703 755 2.511373 TCTTACATGCCGCCTGCG 60.511 61.111 4.20 4.20 45.60 5.18
721 773 1.632422 CGAGCCCAATGCACATTTTC 58.368 50.000 0.00 0.00 44.83 2.29
727 779 2.228582 CCCAATGCACATTTTCGTGAGA 59.771 45.455 0.00 0.00 39.34 3.27
728 780 3.119388 CCCAATGCACATTTTCGTGAGAT 60.119 43.478 0.00 0.00 41.60 2.75
760 812 0.934496 TTCAGTTTTGACCGTGAGCG 59.066 50.000 0.00 0.00 31.71 5.03
902 955 3.054802 CAGGGTGAGCTTGTTAGGAGAAT 60.055 47.826 0.00 0.00 0.00 2.40
904 957 4.407296 AGGGTGAGCTTGTTAGGAGAATAG 59.593 45.833 0.00 0.00 0.00 1.73
909 962 6.922957 GTGAGCTTGTTAGGAGAATAGATCTG 59.077 42.308 5.18 0.00 38.96 2.90
916 969 8.441311 TGTTAGGAGAATAGATCTGGCAATAT 57.559 34.615 5.18 0.00 38.96 1.28
917 970 9.547279 TGTTAGGAGAATAGATCTGGCAATATA 57.453 33.333 5.18 0.00 38.96 0.86
939 992 2.574322 CGGCATGCGAGCAAAATATAC 58.426 47.619 12.44 0.00 35.83 1.47
948 1001 3.376859 CGAGCAAAATATACACAAGGGCA 59.623 43.478 0.00 0.00 0.00 5.36
958 1011 5.743636 ATACACAAGGGCAATGTTTGAAT 57.256 34.783 0.00 0.00 0.00 2.57
960 1013 5.138125 ACACAAGGGCAATGTTTGAATAG 57.862 39.130 0.00 0.00 0.00 1.73
963 1016 5.634859 CACAAGGGCAATGTTTGAATAGTTC 59.365 40.000 0.00 0.00 0.00 3.01
967 1020 3.119495 GGCAATGTTTGAATAGTTCGGCT 60.119 43.478 0.00 0.00 0.00 5.52
982 1035 1.134699 TCGGCTGTCTGCTAATTGAGG 60.135 52.381 1.44 0.00 42.39 3.86
1025 1078 4.880696 GGAGGTTGAGAAGATGAGGAAATG 59.119 45.833 0.00 0.00 0.00 2.32
1060 1114 7.487509 CACACAATAATCCATCAAAACGCAATA 59.512 33.333 0.00 0.00 0.00 1.90
1066 1120 4.075682 TCCATCAAAACGCAATAAGTGGA 58.924 39.130 0.00 0.00 0.00 4.02
1067 1121 4.155826 TCCATCAAAACGCAATAAGTGGAG 59.844 41.667 0.00 0.00 0.00 3.86
1068 1122 4.082787 CCATCAAAACGCAATAAGTGGAGT 60.083 41.667 0.00 0.00 0.00 3.85
1069 1123 4.481930 TCAAAACGCAATAAGTGGAGTG 57.518 40.909 0.00 0.00 0.00 3.51
1082 1136 2.714250 AGTGGAGTGGGGTTGTTTATGA 59.286 45.455 0.00 0.00 0.00 2.15
1087 1141 4.263594 GGAGTGGGGTTGTTTATGAGGTAA 60.264 45.833 0.00 0.00 0.00 2.85
1106 1160 1.115467 ATCATCACAGAGGACGGGTC 58.885 55.000 0.00 0.00 0.00 4.46
1131 1185 3.879295 AGTTCATTTGTGAGTGTGGTCAG 59.121 43.478 0.00 0.00 0.00 3.51
1137 1191 2.905075 TGTGAGTGTGGTCAGTTTGAG 58.095 47.619 0.00 0.00 0.00 3.02
1162 1216 2.256591 GGGATGCTATGCTGCCACG 61.257 63.158 0.00 0.00 0.00 4.94
1163 1217 1.524621 GGATGCTATGCTGCCACGT 60.525 57.895 0.00 0.00 0.00 4.49
1164 1218 1.645455 GATGCTATGCTGCCACGTG 59.355 57.895 9.08 9.08 0.00 4.49
1165 1219 1.078214 ATGCTATGCTGCCACGTGT 60.078 52.632 15.65 0.00 0.00 4.49
1166 1220 0.677731 ATGCTATGCTGCCACGTGTT 60.678 50.000 15.65 0.00 0.00 3.32
1167 1221 1.135315 GCTATGCTGCCACGTGTTG 59.865 57.895 15.65 5.10 0.00 3.33
1168 1222 1.135315 CTATGCTGCCACGTGTTGC 59.865 57.895 15.65 15.16 0.00 4.17
1173 1227 4.237207 TGCCACGTGTTGCGGGTA 62.237 61.111 15.65 0.00 43.72 3.69
1174 1228 2.973600 GCCACGTGTTGCGGGTAA 60.974 61.111 15.65 0.00 43.72 2.85
1175 1229 2.329614 GCCACGTGTTGCGGGTAAT 61.330 57.895 15.65 0.00 43.72 1.89
1176 1230 1.499949 CCACGTGTTGCGGGTAATG 59.500 57.895 15.65 0.00 43.72 1.90
1179 1233 1.296056 ACGTGTTGCGGGTAATGCTC 61.296 55.000 0.00 0.00 46.52 4.26
1180 1234 1.019278 CGTGTTGCGGGTAATGCTCT 61.019 55.000 0.00 0.00 36.85 4.09
1181 1235 0.447801 GTGTTGCGGGTAATGCTCTG 59.552 55.000 0.00 0.00 0.00 3.35
1182 1236 1.305219 TGTTGCGGGTAATGCTCTGC 61.305 55.000 0.00 0.00 35.93 4.26
1183 1237 1.748879 TTGCGGGTAATGCTCTGCC 60.749 57.895 0.00 0.00 34.57 4.85
1184 1238 2.190578 GCGGGTAATGCTCTGCCT 59.809 61.111 0.00 0.00 0.00 4.75
1185 1239 1.452108 GCGGGTAATGCTCTGCCTT 60.452 57.895 0.00 0.00 0.00 4.35
1187 1241 1.543429 GCGGGTAATGCTCTGCCTTAT 60.543 52.381 0.00 0.00 0.00 1.73
1188 1242 2.146342 CGGGTAATGCTCTGCCTTATG 58.854 52.381 0.00 0.00 0.00 1.90
1189 1243 1.882623 GGGTAATGCTCTGCCTTATGC 59.117 52.381 0.00 0.00 41.77 3.14
1205 1259 6.856895 GCCTTATGCAAATAAAGAAGTCAGT 58.143 36.000 0.00 0.00 40.77 3.41
1259 1313 4.943705 GGTCTATTTTCTGGTCAAGCATGA 59.056 41.667 0.00 0.00 0.00 3.07
1276 1330 5.670485 AGCATGACAGATGTATTTCGGTTA 58.330 37.500 0.00 0.00 0.00 2.85
1312 1366 9.733556 TTTTTGCTTCTGTTCAGGTAATAGATA 57.266 29.630 0.00 0.00 35.51 1.98
1323 1377 6.997655 TCAGGTAATAGATATGCTTCACCTG 58.002 40.000 10.47 10.47 43.24 4.00
1333 1387 3.350219 TGCTTCACCTGGAGGAAATAC 57.650 47.619 0.00 0.00 38.94 1.89
1335 1389 2.906354 CTTCACCTGGAGGAAATACCG 58.094 52.381 0.00 0.00 44.74 4.02
1349 1403 5.885912 AGGAAATACCGCTGAAACACATAAT 59.114 36.000 0.00 0.00 44.74 1.28
1361 1415 3.281727 ACACATAATGAAGCGGTGGAT 57.718 42.857 0.00 0.00 33.91 3.41
1362 1416 2.945008 ACACATAATGAAGCGGTGGATG 59.055 45.455 0.00 0.00 33.91 3.51
1370 1424 1.410517 GAAGCGGTGGATGAGAGATGA 59.589 52.381 0.00 0.00 0.00 2.92
1376 1430 2.158696 GGTGGATGAGAGATGAAAGGGG 60.159 54.545 0.00 0.00 0.00 4.79
1385 1439 4.043596 AGAGATGAAAGGGGCATACTTCT 58.956 43.478 0.00 0.00 0.00 2.85
1397 1451 4.061596 GGCATACTTCTTGAGCACCTATC 58.938 47.826 0.00 0.00 0.00 2.08
1398 1452 4.061596 GCATACTTCTTGAGCACCTATCC 58.938 47.826 0.00 0.00 0.00 2.59
1436 1490 3.889196 TGCGGTAAACATGTCTTTCAC 57.111 42.857 0.00 0.00 0.00 3.18
1483 1537 2.418368 AGCTATGGAATTTGTGCGGA 57.582 45.000 0.00 0.00 0.00 5.54
1489 1543 0.970427 GGAATTTGTGCGGATGGGGT 60.970 55.000 0.00 0.00 0.00 4.95
1495 1549 3.093172 TGCGGATGGGGTATGCCA 61.093 61.111 1.04 0.00 36.17 4.92
1505 1559 1.103398 GGGTATGCCAGCGCTGAATT 61.103 55.000 38.06 22.48 36.17 2.17
1506 1560 0.740737 GGTATGCCAGCGCTGAATTT 59.259 50.000 38.06 20.75 35.36 1.82
1519 1573 3.552684 CGCTGAATTTTTCCACCACATGT 60.553 43.478 0.00 0.00 0.00 3.21
1595 2099 2.367567 TCCACGCTTGTTCCTCTTAGTT 59.632 45.455 0.00 0.00 0.00 2.24
1600 2104 3.120991 CGCTTGTTCCTCTTAGTTGAACG 60.121 47.826 10.26 0.00 40.92 3.95
1618 2122 3.347958 ACGGTTGTTGCATTTACAGTG 57.652 42.857 0.00 0.00 0.00 3.66
1619 2123 2.685897 ACGGTTGTTGCATTTACAGTGT 59.314 40.909 0.00 0.00 0.00 3.55
1620 2124 3.129638 ACGGTTGTTGCATTTACAGTGTT 59.870 39.130 0.00 0.00 0.00 3.32
1621 2125 3.485378 CGGTTGTTGCATTTACAGTGTTG 59.515 43.478 0.00 0.00 0.00 3.33
1622 2126 4.429108 GGTTGTTGCATTTACAGTGTTGT 58.571 39.130 0.00 0.00 41.39 3.32
1644 2148 7.804614 TGTTCAGAAAAATGTGTTGTTGTAC 57.195 32.000 0.00 0.00 0.00 2.90
1673 2177 4.712122 AATTGTCCGTGTTGAGTGTTTT 57.288 36.364 0.00 0.00 0.00 2.43
1681 2185 6.748198 GTCCGTGTTGAGTGTTTTTGAAAATA 59.252 34.615 0.00 0.00 0.00 1.40
1683 2187 6.528423 CCGTGTTGAGTGTTTTTGAAAATACA 59.472 34.615 15.34 5.04 40.92 2.29
1685 2189 7.391016 GTGTTGAGTGTTTTTGAAAATACAGC 58.609 34.615 15.34 9.18 40.92 4.40
1686 2190 6.252441 TGTTGAGTGTTTTTGAAAATACAGCG 59.748 34.615 15.34 0.00 40.92 5.18
1687 2191 5.885881 TGAGTGTTTTTGAAAATACAGCGT 58.114 33.333 15.34 0.00 40.92 5.07
1693 2197 7.429920 GTGTTTTTGAAAATACAGCGTTGTAGA 59.570 33.333 17.26 0.00 42.72 2.59
1711 2215 8.372521 CGTTGTAGAAATGTATGGAAAATTTGC 58.627 33.333 0.00 0.00 0.00 3.68
1712 2216 9.423061 GTTGTAGAAATGTATGGAAAATTTGCT 57.577 29.630 0.00 0.00 0.00 3.91
1728 2232 1.453379 GCTCTGGCATGCCTGATGT 60.453 57.895 37.19 0.00 41.96 3.06
1753 2265 5.023533 ACTAGCGTCCATGATATTGTTGT 57.976 39.130 0.00 0.00 0.00 3.32
1762 2274 5.182950 TCCATGATATTGTTGTGAACACACC 59.817 40.000 7.16 1.30 41.97 4.16
1772 2284 3.351740 TGTGAACACACCTGTCATTTGT 58.648 40.909 3.39 0.00 36.21 2.83
1774 2286 4.104776 GTGAACACACCTGTCATTTGTTG 58.895 43.478 0.00 0.00 30.60 3.33
1794 2306 0.966875 GTGCTGGCCATGATGTCCAA 60.967 55.000 5.51 0.00 0.00 3.53
1808 2320 1.902508 TGTCCAACCTCTCCTGCTTAG 59.097 52.381 0.00 0.00 0.00 2.18
1812 2324 0.908198 AACCTCTCCTGCTTAGCCAG 59.092 55.000 0.29 0.00 0.00 4.85
1817 2329 0.322975 CTCCTGCTTAGCCAGTGTGT 59.677 55.000 0.29 0.00 0.00 3.72
1824 2336 0.110295 TTAGCCAGTGTGTGCACCAT 59.890 50.000 15.69 0.00 46.35 3.55
1838 2350 3.882288 GTGCACCATGGGTTTCAAATTTT 59.118 39.130 18.09 0.00 31.02 1.82
1862 2374 5.874810 TGAACTGCATCCAGAGTAAATGTAC 59.125 40.000 0.00 0.00 41.77 2.90
1863 2375 5.683876 ACTGCATCCAGAGTAAATGTACT 57.316 39.130 0.00 0.00 43.56 2.73
1873 2385 4.732672 AGTAAATGTACTCCCTCGGTTC 57.267 45.455 0.00 0.00 35.55 3.62
1874 2386 3.450096 AGTAAATGTACTCCCTCGGTTCC 59.550 47.826 0.00 0.00 35.55 3.62
1875 2387 2.249309 AATGTACTCCCTCGGTTCCT 57.751 50.000 0.00 0.00 0.00 3.36
1876 2388 3.393426 AATGTACTCCCTCGGTTCCTA 57.607 47.619 0.00 0.00 0.00 2.94
1877 2389 2.905415 TGTACTCCCTCGGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
1878 2390 3.173953 TGTACTCCCTCGGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
1879 2391 3.716431 TGTACTCCCTCGGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
1880 2392 4.870636 TGTACTCCCTCGGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
1881 2393 5.461327 TGTACTCCCTCGGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
1882 2394 5.901276 TGTACTCCCTCGGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
1883 2395 5.970501 ACTCCCTCGGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
1884 2396 5.681639 ACTCCCTCGGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
1885 2397 5.191124 ACTCCCTCGGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
1886 2398 5.677567 TCCCTCGGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
1887 2399 5.427481 TCCCTCGGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
1888 2400 6.069847 TCCCTCGGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
1889 2401 6.602009 CCCTCGGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
1890 2402 7.201705 CCCTCGGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
1891 2403 7.553044 CCTCGGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
1892 2404 9.595823 CTCGGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
1893 2405 9.595823 TCGGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
1894 2406 9.595823 CGGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
1909 2421 9.996554 TGTCTTTCTAGATATTTCAACAAGTGA 57.003 29.630 0.00 0.00 31.86 3.41
1918 2430 9.302345 AGATATTTCAACAAGTGACTACATACG 57.698 33.333 0.00 0.00 35.39 3.06
1919 2431 6.721571 ATTTCAACAAGTGACTACATACGG 57.278 37.500 0.00 0.00 35.39 4.02
1920 2432 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
1921 2433 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
1922 2434 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
1923 2435 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
1924 2436 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
1925 2437 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
1926 2438 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
1927 2439 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
1928 2440 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
1929 2441 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
1930 2442 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
1931 2443 3.871594 ACTACATACGGAGCAAAATGAGC 59.128 43.478 0.00 0.00 0.00 4.26
1932 2444 1.665679 ACATACGGAGCAAAATGAGCG 59.334 47.619 0.00 0.00 37.01 5.03
1933 2445 1.933181 CATACGGAGCAAAATGAGCGA 59.067 47.619 0.00 0.00 37.01 4.93
1934 2446 2.087501 TACGGAGCAAAATGAGCGAA 57.912 45.000 0.00 0.00 37.01 4.70
1935 2447 1.453155 ACGGAGCAAAATGAGCGAAT 58.547 45.000 0.00 0.00 37.01 3.34
1936 2448 1.398390 ACGGAGCAAAATGAGCGAATC 59.602 47.619 0.00 0.00 37.01 2.52
1937 2449 1.667724 CGGAGCAAAATGAGCGAATCT 59.332 47.619 0.00 0.00 37.01 2.40
1938 2450 2.866156 CGGAGCAAAATGAGCGAATCTA 59.134 45.455 0.00 0.00 37.01 1.98
1939 2451 3.496130 CGGAGCAAAATGAGCGAATCTAT 59.504 43.478 0.00 0.00 37.01 1.98
1940 2452 4.610007 CGGAGCAAAATGAGCGAATCTATG 60.610 45.833 0.00 0.00 37.01 2.23
1941 2453 4.217497 GAGCAAAATGAGCGAATCTATGC 58.783 43.478 0.00 0.00 37.01 3.14
1942 2454 3.881688 AGCAAAATGAGCGAATCTATGCT 59.118 39.130 0.00 0.00 45.90 3.79
1953 2465 7.183580 AGCGAATCTATGCTCTAAAAATGTC 57.816 36.000 0.00 0.00 36.53 3.06
1954 2466 6.989169 AGCGAATCTATGCTCTAAAAATGTCT 59.011 34.615 0.00 0.00 36.53 3.41
1955 2467 8.144478 AGCGAATCTATGCTCTAAAAATGTCTA 58.856 33.333 0.00 0.00 36.53 2.59
1956 2468 8.217778 GCGAATCTATGCTCTAAAAATGTCTAC 58.782 37.037 0.00 0.00 0.00 2.59
1957 2469 9.249457 CGAATCTATGCTCTAAAAATGTCTACA 57.751 33.333 0.00 0.00 0.00 2.74
1964 2476 8.662781 TGCTCTAAAAATGTCTACATACATCC 57.337 34.615 0.00 0.00 39.16 3.51
1965 2477 7.438160 TGCTCTAAAAATGTCTACATACATCCG 59.562 37.037 0.00 0.00 39.16 4.18
1966 2478 7.438459 GCTCTAAAAATGTCTACATACATCCGT 59.562 37.037 0.00 0.00 39.16 4.69
1967 2479 9.961265 CTCTAAAAATGTCTACATACATCCGTA 57.039 33.333 0.00 0.00 39.16 4.02
1968 2480 9.740239 TCTAAAAATGTCTACATACATCCGTAC 57.260 33.333 0.00 0.00 39.16 3.67
1969 2481 9.524106 CTAAAAATGTCTACATACATCCGTACA 57.476 33.333 0.00 0.00 39.16 2.90
1970 2482 8.958119 AAAAATGTCTACATACATCCGTACAT 57.042 30.769 0.00 0.00 39.16 2.29
1971 2483 7.946655 AAATGTCTACATACATCCGTACATG 57.053 36.000 0.00 0.00 39.16 3.21
1972 2484 5.447624 TGTCTACATACATCCGTACATGG 57.552 43.478 0.00 0.00 0.00 3.66
1973 2485 4.891168 TGTCTACATACATCCGTACATGGT 59.109 41.667 0.00 0.00 0.00 3.55
1974 2486 6.063404 TGTCTACATACATCCGTACATGGTA 58.937 40.000 0.00 0.00 0.00 3.25
1975 2487 6.206048 TGTCTACATACATCCGTACATGGTAG 59.794 42.308 0.00 0.00 0.00 3.18
1976 2488 6.206243 GTCTACATACATCCGTACATGGTAGT 59.794 42.308 0.00 0.00 30.80 2.73
1977 2489 5.449107 ACATACATCCGTACATGGTAGTC 57.551 43.478 0.00 0.00 0.00 2.59
1978 2490 4.280174 ACATACATCCGTACATGGTAGTCC 59.720 45.833 0.00 0.00 0.00 3.85
1996 2508 9.967451 TGGTAGTCCATTTGAAATGTATAGAAA 57.033 29.630 15.93 0.00 39.03 2.52
2000 2512 9.739276 AGTCCATTTGAAATGTATAGAAAGACA 57.261 29.630 15.93 0.00 0.00 3.41
2017 2529 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2018 2530 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2019 2531 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2020 2532 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2021 2533 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2041 2553 3.929610 GAGTAGTTTGCATGAGACTGGTC 59.070 47.826 0.00 0.00 0.00 4.02
2043 2555 1.344438 AGTTTGCATGAGACTGGTCGA 59.656 47.619 0.00 0.00 34.09 4.20
2044 2556 1.461127 GTTTGCATGAGACTGGTCGAC 59.539 52.381 7.13 7.13 34.09 4.20
2068 2586 4.018960 AGACTATATGAATGGCACCATCCC 60.019 45.833 1.88 0.00 35.31 3.85
2098 2616 4.980805 GGACGACGGCAAGCACCA 62.981 66.667 1.63 0.00 0.00 4.17
2100 2618 2.740714 GACGACGGCAAGCACCATC 61.741 63.158 0.00 0.00 0.00 3.51
2120 2638 4.056125 CAGTGACGGCCGAGCAGA 62.056 66.667 35.90 7.23 0.00 4.26
2125 2643 4.742649 ACGGCCGAGCAGAGGAGA 62.743 66.667 35.90 0.00 0.00 3.71
2140 2658 4.038162 CAGAGGAGAAGATTAAGGTACGGG 59.962 50.000 0.00 0.00 0.00 5.28
2149 2667 7.493645 AGAAGATTAAGGTACGGGTAAAAATCG 59.506 37.037 0.00 0.00 0.00 3.34
2169 2687 2.101582 CGATAGGTTCTTCCACTCCTGG 59.898 54.545 0.00 0.00 39.23 4.45
2204 2722 4.815308 CCAAAATTGTTGCTTCATGTGGAA 59.185 37.500 0.00 0.00 0.00 3.53
2212 2750 6.111382 TGTTGCTTCATGTGGAAAATTCAAA 58.889 32.000 0.00 0.00 34.44 2.69
2217 2755 8.366401 TGCTTCATGTGGAAAATTCAAAATCTA 58.634 29.630 0.00 0.00 34.44 1.98
2221 2759 7.673504 TCATGTGGAAAATTCAAAATCTAGGGA 59.326 33.333 0.00 0.00 0.00 4.20
2242 2780 1.580845 GCAACAAGCGTCTGGAGCAT 61.581 55.000 0.00 0.00 37.01 3.79
2279 2817 1.996191 GAGGATGCTCAAGTTGTCGAC 59.004 52.381 9.11 9.11 0.00 4.20
2280 2818 0.716108 GGATGCTCAAGTTGTCGACG 59.284 55.000 11.62 0.00 0.00 5.12
2281 2819 1.668919 GGATGCTCAAGTTGTCGACGA 60.669 52.381 11.62 6.16 0.00 4.20
2282 2820 1.651138 GATGCTCAAGTTGTCGACGAG 59.349 52.381 11.62 11.64 0.00 4.18
2283 2821 0.318699 TGCTCAAGTTGTCGACGAGG 60.319 55.000 11.62 1.97 0.00 4.63
2286 2824 2.606308 GCTCAAGTTGTCGACGAGGTTA 60.606 50.000 11.62 0.00 0.00 2.85
2287 2825 3.235195 CTCAAGTTGTCGACGAGGTTAG 58.765 50.000 11.62 0.81 0.00 2.34
2288 2826 1.719780 CAAGTTGTCGACGAGGTTAGC 59.280 52.381 11.62 0.00 0.00 3.09
2289 2827 1.245732 AGTTGTCGACGAGGTTAGCT 58.754 50.000 11.62 0.00 0.00 3.32
2290 2828 1.199558 AGTTGTCGACGAGGTTAGCTC 59.800 52.381 11.62 0.72 0.00 4.09
2291 2829 1.068748 GTTGTCGACGAGGTTAGCTCA 60.069 52.381 11.62 0.00 0.00 4.26
2294 2832 2.034939 TGTCGACGAGGTTAGCTCAAAA 59.965 45.455 11.62 0.00 0.00 2.44
2295 2833 3.251571 GTCGACGAGGTTAGCTCAAAAT 58.748 45.455 12.07 0.00 0.00 1.82
2296 2834 3.303760 GTCGACGAGGTTAGCTCAAAATC 59.696 47.826 12.07 2.73 0.00 2.17
2297 2835 3.192844 TCGACGAGGTTAGCTCAAAATCT 59.807 43.478 12.07 0.00 0.00 2.40
2303 2841 7.103641 ACGAGGTTAGCTCAAAATCTTTCATA 58.896 34.615 12.07 0.00 0.00 2.15
2304 2842 7.606456 ACGAGGTTAGCTCAAAATCTTTCATAA 59.394 33.333 12.07 0.00 0.00 1.90
2327 2865 6.709018 ACCATTGGAAATAGTTAATTCCCG 57.291 37.500 10.37 0.00 43.66 5.14
2333 2871 7.185318 TGGAAATAGTTAATTCCCGTGTCTA 57.815 36.000 3.65 0.00 43.66 2.59
2334 2872 7.622713 TGGAAATAGTTAATTCCCGTGTCTAA 58.377 34.615 3.65 0.00 43.66 2.10
2349 2889 6.310711 CCCGTGTCTAAAAGATCTCTGTAAAC 59.689 42.308 0.00 0.00 0.00 2.01
2400 2940 2.505819 AGTGATACATCAGGACCCCAAC 59.494 50.000 0.00 0.00 37.51 3.77
2401 2941 2.238646 GTGATACATCAGGACCCCAACA 59.761 50.000 0.00 0.00 37.51 3.33
2402 2942 2.238646 TGATACATCAGGACCCCAACAC 59.761 50.000 0.00 0.00 32.11 3.32
2403 2943 0.988832 TACATCAGGACCCCAACACC 59.011 55.000 0.00 0.00 0.00 4.16
2404 2944 1.065410 ACATCAGGACCCCAACACCA 61.065 55.000 0.00 0.00 0.00 4.17
2405 2945 0.112218 CATCAGGACCCCAACACCAA 59.888 55.000 0.00 0.00 0.00 3.67
2406 2946 0.856982 ATCAGGACCCCAACACCAAA 59.143 50.000 0.00 0.00 0.00 3.28
2426 2972 4.564782 AACTGATTGCAGAGATGGAAGA 57.435 40.909 0.00 0.00 45.17 2.87
2427 2973 4.564782 ACTGATTGCAGAGATGGAAGAA 57.435 40.909 0.00 0.00 45.17 2.52
2428 2974 4.914983 ACTGATTGCAGAGATGGAAGAAA 58.085 39.130 0.00 0.00 45.17 2.52
2429 2975 5.319453 ACTGATTGCAGAGATGGAAGAAAA 58.681 37.500 0.00 0.00 45.17 2.29
2430 2976 5.950549 ACTGATTGCAGAGATGGAAGAAAAT 59.049 36.000 0.00 0.00 45.17 1.82
2431 2977 6.127703 ACTGATTGCAGAGATGGAAGAAAATG 60.128 38.462 0.00 0.00 45.17 2.32
2432 2978 5.126545 TGATTGCAGAGATGGAAGAAAATGG 59.873 40.000 0.00 0.00 0.00 3.16
2433 2979 4.305539 TGCAGAGATGGAAGAAAATGGA 57.694 40.909 0.00 0.00 0.00 3.41
2434 2980 4.267536 TGCAGAGATGGAAGAAAATGGAG 58.732 43.478 0.00 0.00 0.00 3.86
2435 2981 3.066481 GCAGAGATGGAAGAAAATGGAGC 59.934 47.826 0.00 0.00 0.00 4.70
2436 2982 3.311871 CAGAGATGGAAGAAAATGGAGCG 59.688 47.826 0.00 0.00 0.00 5.03
2459 3005 2.568546 TCTGGCCTGGAAGAAGGATA 57.431 50.000 10.07 0.00 40.02 2.59
2460 3006 3.066208 TCTGGCCTGGAAGAAGGATAT 57.934 47.619 10.07 0.00 40.02 1.63
2463 3009 1.423161 GGCCTGGAAGAAGGATATGCT 59.577 52.381 0.00 0.00 40.02 3.79
2480 3026 0.945813 GCTGAGAATGATCCTGCAGC 59.054 55.000 8.66 0.00 38.04 5.25
2482 3028 2.214347 CTGAGAATGATCCTGCAGCTG 58.786 52.381 10.11 10.11 0.00 4.24
2508 3054 0.392461 TGGCCGCTTTCTATGTGGAC 60.392 55.000 0.00 0.00 43.11 4.02
2529 3075 0.804933 GACGGCCGTTTCGCTTATCT 60.805 55.000 34.65 3.67 0.00 1.98
2530 3076 1.082117 ACGGCCGTTTCGCTTATCTG 61.082 55.000 28.70 0.00 0.00 2.90
2580 3126 3.578282 GGAAACAAACTGATCCATTGGGT 59.422 43.478 2.09 0.00 34.93 4.51
2592 3138 8.949421 ACTGATCCATTGGGTAGTATTCTATTT 58.051 33.333 2.09 0.00 34.93 1.40
2593 3139 9.799106 CTGATCCATTGGGTAGTATTCTATTTT 57.201 33.333 2.09 0.00 34.93 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.331687 CCCATTTGTCCACATCAAATTCTTTAC 59.668 37.037 0.00 0.00 41.58 2.01
1 2 7.234371 TCCCATTTGTCCACATCAAATTCTTTA 59.766 33.333 0.00 0.00 41.58 1.85
2 3 6.043012 TCCCATTTGTCCACATCAAATTCTTT 59.957 34.615 0.00 0.00 41.58 2.52
40 41 4.082125 CAAATCCCCAAAGAACTGCTACT 58.918 43.478 0.00 0.00 0.00 2.57
41 42 3.193479 CCAAATCCCCAAAGAACTGCTAC 59.807 47.826 0.00 0.00 0.00 3.58
44 45 1.970640 ACCAAATCCCCAAAGAACTGC 59.029 47.619 0.00 0.00 0.00 4.40
63 64 7.360946 GGTTCTGTAGGTCATGTTGAATGTTAC 60.361 40.741 0.00 0.00 0.00 2.50
68 69 5.241403 TGGTTCTGTAGGTCATGTTGAAT 57.759 39.130 0.00 0.00 0.00 2.57
72 73 4.706842 AGTTGGTTCTGTAGGTCATGTT 57.293 40.909 0.00 0.00 0.00 2.71
76 77 5.305902 TCATGTAAGTTGGTTCTGTAGGTCA 59.694 40.000 0.00 0.00 0.00 4.02
80 81 6.402550 GCATGTCATGTAAGTTGGTTCTGTAG 60.403 42.308 14.26 0.00 0.00 2.74
96 97 5.587388 AATAGACCAAAAGGCATGTCATG 57.413 39.130 8.56 8.56 0.00 3.07
110 111 5.063017 TGTTTACCCCAACAAATAGACCA 57.937 39.130 0.00 0.00 33.60 4.02
141 142 4.876125 ACACGTGCTAGGATAATGATCTG 58.124 43.478 17.22 0.00 32.15 2.90
158 159 2.687425 CTCATCTCTCATCAGGACACGT 59.313 50.000 0.00 0.00 0.00 4.49
161 162 2.694109 CTGCTCATCTCTCATCAGGACA 59.306 50.000 0.00 0.00 0.00 4.02
163 164 2.317973 CCTGCTCATCTCTCATCAGGA 58.682 52.381 0.03 0.00 42.64 3.86
199 200 1.134220 ACAGGAACTCAGCGAAAACCA 60.134 47.619 0.00 0.00 34.60 3.67
270 271 5.303078 TGCAAAATGCTTTACTACTTGGGAA 59.697 36.000 3.78 0.00 45.31 3.97
310 350 7.382898 TGTACAAAGTGCACATCATAGTTAGA 58.617 34.615 21.04 0.00 0.00 2.10
344 384 0.687757 TCGCCACCTCCATAGCTCTT 60.688 55.000 0.00 0.00 0.00 2.85
374 414 2.612212 CCGGTGCACAATATCAAGGTAC 59.388 50.000 20.43 0.00 0.00 3.34
379 419 1.271652 ACCACCGGTGCACAATATCAA 60.272 47.619 29.75 0.00 32.98 2.57
380 420 0.326595 ACCACCGGTGCACAATATCA 59.673 50.000 29.75 0.00 32.98 2.15
405 445 1.591703 CCTTCTCTAGCACGTGCCA 59.408 57.895 35.51 23.16 43.38 4.92
416 456 3.142174 CAAGGTTTCTTTCGCCTTCTCT 58.858 45.455 0.00 0.00 40.31 3.10
424 464 0.825840 TGGCCCCAAGGTTTCTTTCG 60.826 55.000 0.00 0.00 34.57 3.46
446 486 6.072452 CCTGGAAGTCATTCTTTTTCCTGTAC 60.072 42.308 4.03 0.00 39.80 2.90
451 491 3.573967 TGCCTGGAAGTCATTCTTTTTCC 59.426 43.478 0.00 0.00 39.59 3.13
460 500 1.280421 GGAACTCTGCCTGGAAGTCAT 59.720 52.381 0.53 0.00 0.00 3.06
470 510 2.749621 CACAACCTTATGGAACTCTGCC 59.250 50.000 0.81 0.00 37.04 4.85
501 541 7.439655 AGCTGTCTCAAACTCAACTTTAGTTAG 59.560 37.037 0.00 0.00 36.17 2.34
509 549 3.118261 TCCAAGCTGTCTCAAACTCAACT 60.118 43.478 0.00 0.00 0.00 3.16
511 551 3.558931 TCCAAGCTGTCTCAAACTCAA 57.441 42.857 0.00 0.00 0.00 3.02
519 559 1.467734 CAGCATGTTCCAAGCTGTCTC 59.532 52.381 12.01 0.00 46.66 3.36
527 567 4.406456 ACTTATCAACCAGCATGTTCCAA 58.594 39.130 0.00 0.00 0.00 3.53
532 572 9.407380 TCAAATTATACTTATCAACCAGCATGT 57.593 29.630 0.00 0.00 0.00 3.21
551 599 9.527157 TTCATGTAAGGATGGTTTCTCAAATTA 57.473 29.630 0.00 0.00 0.00 1.40
563 611 5.301835 AGATCTGGTTCATGTAAGGATGG 57.698 43.478 0.00 0.00 0.00 3.51
577 625 3.306088 CGGGCGTATTTCATAGATCTGGT 60.306 47.826 5.18 0.00 0.00 4.00
594 642 1.281656 GTTTTGTCCACTTCGGGCG 59.718 57.895 0.00 0.00 45.31 6.13
597 645 3.408634 AGTATGGTTTTGTCCACTTCGG 58.591 45.455 0.00 0.00 40.51 4.30
606 654 4.343814 CACCCCTTTGAAGTATGGTTTTGT 59.656 41.667 0.00 0.00 0.00 2.83
612 660 3.244911 ACAGACACCCCTTTGAAGTATGG 60.245 47.826 0.00 0.00 0.00 2.74
623 671 0.188342 ATTTTGCCACAGACACCCCT 59.812 50.000 0.00 0.00 0.00 4.79
627 675 3.181487 ACTTGTCATTTTGCCACAGACAC 60.181 43.478 0.00 0.00 38.77 3.67
628 676 3.023119 ACTTGTCATTTTGCCACAGACA 58.977 40.909 0.00 0.00 37.43 3.41
629 677 3.715628 ACTTGTCATTTTGCCACAGAC 57.284 42.857 0.00 0.00 0.00 3.51
634 686 3.242903 CGTGTGTACTTGTCATTTTGCCA 60.243 43.478 0.00 0.00 0.00 4.92
636 688 3.296628 CCGTGTGTACTTGTCATTTTGC 58.703 45.455 0.00 0.00 0.00 3.68
641 693 2.472695 ATGCCGTGTGTACTTGTCAT 57.527 45.000 0.00 0.00 0.00 3.06
643 695 2.139917 TCAATGCCGTGTGTACTTGTC 58.860 47.619 0.00 0.00 0.00 3.18
655 707 0.109597 GGTTTGCACTCTCAATGCCG 60.110 55.000 0.00 0.00 42.69 5.69
656 708 0.961019 TGGTTTGCACTCTCAATGCC 59.039 50.000 0.00 0.00 42.69 4.40
657 709 1.337703 TGTGGTTTGCACTCTCAATGC 59.662 47.619 0.00 0.00 43.68 3.56
660 712 2.653726 ACATGTGGTTTGCACTCTCAA 58.346 42.857 0.00 0.00 0.00 3.02
661 713 2.346766 ACATGTGGTTTGCACTCTCA 57.653 45.000 0.00 0.00 0.00 3.27
667 719 3.023119 AGACTTGAACATGTGGTTTGCA 58.977 40.909 0.00 0.00 40.63 4.08
699 751 1.940883 AATGTGCATTGGGCTCGCAG 61.941 55.000 0.00 0.00 45.15 5.18
703 755 1.067635 ACGAAAATGTGCATTGGGCTC 60.068 47.619 0.00 0.00 45.15 4.70
707 759 3.557577 TCTCACGAAAATGTGCATTGG 57.442 42.857 0.00 0.00 39.73 3.16
721 773 6.037720 ACTGAAGTCTCATGTACTATCTCACG 59.962 42.308 4.30 0.00 0.00 4.35
727 779 7.819900 GGTCAAAACTGAAGTCTCATGTACTAT 59.180 37.037 4.30 0.00 0.00 2.12
728 780 7.152645 GGTCAAAACTGAAGTCTCATGTACTA 58.847 38.462 4.30 0.00 0.00 1.82
760 812 4.220163 TCTTCTCCTCGTAACTTTCTTCCC 59.780 45.833 0.00 0.00 0.00 3.97
769 821 5.124645 TCATAGTCCTCTTCTCCTCGTAAC 58.875 45.833 0.00 0.00 0.00 2.50
864 917 2.564947 ACCCTGACAAGAGACAGATCAC 59.435 50.000 0.00 0.00 39.43 3.06
902 955 2.831526 TGCCGCTATATTGCCAGATCTA 59.168 45.455 3.49 0.00 0.00 1.98
904 957 2.099141 TGCCGCTATATTGCCAGATC 57.901 50.000 3.49 0.00 0.00 2.75
909 962 1.135315 CGCATGCCGCTATATTGCC 59.865 57.895 13.15 0.00 39.08 4.52
916 969 1.375853 ATTTTGCTCGCATGCCGCTA 61.376 50.000 22.38 14.98 39.08 4.26
917 970 1.375853 TATTTTGCTCGCATGCCGCT 61.376 50.000 22.38 9.00 39.08 5.52
932 985 7.238486 TCAAACATTGCCCTTGTGTATATTT 57.762 32.000 0.00 0.00 0.00 1.40
939 992 5.138125 ACTATTCAAACATTGCCCTTGTG 57.862 39.130 0.00 0.00 0.00 3.33
948 1001 5.003804 AGACAGCCGAACTATTCAAACATT 58.996 37.500 0.00 0.00 0.00 2.71
967 1020 4.469586 TGATGTACCCTCAATTAGCAGACA 59.530 41.667 0.00 0.00 0.00 3.41
982 1035 7.609056 ACCTCCATAACGTTATATGATGTACC 58.391 38.462 19.95 0.00 35.69 3.34
1060 1114 3.139397 TCATAAACAACCCCACTCCACTT 59.861 43.478 0.00 0.00 0.00 3.16
1066 1120 5.014755 TGATTACCTCATAAACAACCCCACT 59.985 40.000 0.00 0.00 0.00 4.00
1067 1121 5.258051 TGATTACCTCATAAACAACCCCAC 58.742 41.667 0.00 0.00 0.00 4.61
1068 1122 5.522315 TGATTACCTCATAAACAACCCCA 57.478 39.130 0.00 0.00 0.00 4.96
1069 1123 6.039382 GTGATGATTACCTCATAAACAACCCC 59.961 42.308 0.00 0.00 44.83 4.95
1082 1136 2.695666 CCGTCCTCTGTGATGATTACCT 59.304 50.000 0.00 0.00 0.00 3.08
1087 1141 1.115467 GACCCGTCCTCTGTGATGAT 58.885 55.000 0.00 0.00 0.00 2.45
1106 1160 3.879295 ACCACACTCACAAATGAACTCTG 59.121 43.478 0.00 0.00 33.30 3.35
1131 1185 0.174162 GCATCCCCATGTGCTCAAAC 59.826 55.000 0.00 0.00 38.30 2.93
1137 1191 0.538977 AGCATAGCATCCCCATGTGC 60.539 55.000 0.00 0.00 41.57 4.57
1142 1196 2.385266 TGGCAGCATAGCATCCCCA 61.385 57.895 0.00 0.00 35.83 4.96
1151 1205 2.676029 CGCAACACGTGGCAGCATA 61.676 57.895 21.57 0.00 36.87 3.14
1162 1216 0.447801 CAGAGCATTACCCGCAACAC 59.552 55.000 0.00 0.00 0.00 3.32
1163 1217 1.305219 GCAGAGCATTACCCGCAACA 61.305 55.000 0.00 0.00 0.00 3.33
1164 1218 1.429423 GCAGAGCATTACCCGCAAC 59.571 57.895 0.00 0.00 0.00 4.17
1165 1219 1.748879 GGCAGAGCATTACCCGCAA 60.749 57.895 0.00 0.00 0.00 4.85
1166 1220 2.124736 GGCAGAGCATTACCCGCA 60.125 61.111 0.00 0.00 0.00 5.69
1167 1221 0.179056 TAAGGCAGAGCATTACCCGC 60.179 55.000 0.00 0.00 33.64 6.13
1168 1222 2.146342 CATAAGGCAGAGCATTACCCG 58.854 52.381 0.00 0.00 37.62 5.28
1181 1235 6.856895 ACTGACTTCTTTATTTGCATAAGGC 58.143 36.000 0.00 0.00 45.13 4.35
1182 1236 9.941664 CATACTGACTTCTTTATTTGCATAAGG 57.058 33.333 0.00 0.00 0.00 2.69
1187 1241 7.880713 TGGTACATACTGACTTCTTTATTTGCA 59.119 33.333 0.00 0.00 0.00 4.08
1188 1242 8.263940 TGGTACATACTGACTTCTTTATTTGC 57.736 34.615 0.00 0.00 0.00 3.68
1287 1341 9.905713 ATATCTATTACCTGAACAGAAGCAAAA 57.094 29.630 3.19 0.00 0.00 2.44
1308 1362 3.051940 TCCTCCAGGTGAAGCATATCT 57.948 47.619 0.00 0.00 36.34 1.98
1312 1366 3.372025 GGTATTTCCTCCAGGTGAAGCAT 60.372 47.826 0.00 0.00 36.34 3.79
1323 1377 2.418976 GTGTTTCAGCGGTATTTCCTCC 59.581 50.000 0.00 0.00 0.00 4.30
1333 1387 3.429085 GCTTCATTATGTGTTTCAGCGG 58.571 45.455 0.00 0.00 0.00 5.52
1335 1389 3.119849 ACCGCTTCATTATGTGTTTCAGC 60.120 43.478 0.00 0.00 0.00 4.26
1349 1403 1.137675 CATCTCTCATCCACCGCTTCA 59.862 52.381 0.00 0.00 0.00 3.02
1361 1415 3.387962 AGTATGCCCCTTTCATCTCTCA 58.612 45.455 0.00 0.00 0.00 3.27
1362 1416 4.102367 AGAAGTATGCCCCTTTCATCTCTC 59.898 45.833 0.00 0.00 0.00 3.20
1370 1424 2.041620 TGCTCAAGAAGTATGCCCCTTT 59.958 45.455 0.00 0.00 0.00 3.11
1376 1430 4.061596 GGATAGGTGCTCAAGAAGTATGC 58.938 47.826 0.00 0.00 0.00 3.14
1385 1439 2.116238 GGTAGTGGGATAGGTGCTCAA 58.884 52.381 0.00 0.00 0.00 3.02
1397 1451 2.941415 GCATTGTCCTTCTGGTAGTGGG 60.941 54.545 0.00 0.00 34.23 4.61
1398 1452 2.359900 GCATTGTCCTTCTGGTAGTGG 58.640 52.381 0.00 0.00 34.23 4.00
1436 1490 1.267806 ACAAAGTCGAATGCCTGCAAG 59.732 47.619 0.00 0.00 0.00 4.01
1471 1525 1.757682 TACCCCATCCGCACAAATTC 58.242 50.000 0.00 0.00 0.00 2.17
1474 1528 1.034838 GCATACCCCATCCGCACAAA 61.035 55.000 0.00 0.00 0.00 2.83
1483 1537 3.492353 AGCGCTGGCATACCCCAT 61.492 61.111 10.39 0.00 43.41 4.00
1489 1543 2.159254 GGAAAAATTCAGCGCTGGCATA 60.159 45.455 35.36 19.21 43.41 3.14
1495 1549 1.000274 GTGGTGGAAAAATTCAGCGCT 60.000 47.619 2.64 2.64 38.41 5.92
1505 1559 1.955778 CAGCTGACATGTGGTGGAAAA 59.044 47.619 8.42 0.00 0.00 2.29
1506 1560 1.608055 CAGCTGACATGTGGTGGAAA 58.392 50.000 8.42 0.00 0.00 3.13
1579 2083 3.186613 CCGTTCAACTAAGAGGAACAAGC 59.813 47.826 0.00 0.00 40.62 4.01
1595 2099 3.378742 ACTGTAAATGCAACAACCGTTCA 59.621 39.130 0.00 0.00 31.13 3.18
1600 2104 4.429108 ACAACACTGTAAATGCAACAACC 58.571 39.130 0.00 0.00 32.54 3.77
1618 2122 7.116061 ACAACAACACATTTTTCTGAACAAC 57.884 32.000 0.00 0.00 0.00 3.32
1619 2123 7.867909 TGTACAACAACACATTTTTCTGAACAA 59.132 29.630 0.00 0.00 0.00 2.83
1620 2124 7.371159 TGTACAACAACACATTTTTCTGAACA 58.629 30.769 0.00 0.00 0.00 3.18
1621 2125 7.804614 TGTACAACAACACATTTTTCTGAAC 57.195 32.000 0.00 0.00 0.00 3.18
1659 2163 7.499438 TGTATTTTCAAAAACACTCAACACG 57.501 32.000 0.00 0.00 0.00 4.49
1661 2165 6.252441 CGCTGTATTTTCAAAAACACTCAACA 59.748 34.615 0.00 0.00 0.00 3.33
1673 2177 7.644490 ACATTTCTACAACGCTGTATTTTCAA 58.356 30.769 0.00 0.00 37.41 2.69
1681 2185 4.827692 TCCATACATTTCTACAACGCTGT 58.172 39.130 0.00 0.00 39.75 4.40
1683 2187 6.811253 TTTTCCATACATTTCTACAACGCT 57.189 33.333 0.00 0.00 0.00 5.07
1685 2189 8.372521 GCAAATTTTCCATACATTTCTACAACG 58.627 33.333 0.00 0.00 0.00 4.10
1686 2190 9.423061 AGCAAATTTTCCATACATTTCTACAAC 57.577 29.630 0.00 0.00 0.00 3.32
1687 2191 9.638239 GAGCAAATTTTCCATACATTTCTACAA 57.362 29.630 0.00 0.00 0.00 2.41
1693 2197 5.876460 GCCAGAGCAAATTTTCCATACATTT 59.124 36.000 0.00 0.00 39.53 2.32
1711 2215 1.101635 CCACATCAGGCATGCCAGAG 61.102 60.000 37.18 26.84 35.10 3.35
1712 2216 1.077285 CCACATCAGGCATGCCAGA 60.077 57.895 37.18 34.09 38.92 3.86
1719 2223 1.257750 ACGCTAGTCCACATCAGGCA 61.258 55.000 0.00 0.00 0.00 4.75
1753 2265 3.130164 CCAACAAATGACAGGTGTGTTCA 59.870 43.478 0.00 0.00 36.88 3.18
1762 2274 1.603678 GCCAGCACCAACAAATGACAG 60.604 52.381 0.00 0.00 0.00 3.51
1772 2284 0.966875 GACATCATGGCCAGCACCAA 60.967 55.000 13.05 0.00 44.65 3.67
1774 2286 3.518003 GACATCATGGCCAGCACC 58.482 61.111 13.05 0.00 0.00 5.01
1794 2306 0.252467 ACTGGCTAAGCAGGAGAGGT 60.252 55.000 0.00 0.00 0.00 3.85
1808 2320 2.646719 CATGGTGCACACACTGGC 59.353 61.111 20.43 0.00 46.57 4.85
1812 2324 0.031994 GAAACCCATGGTGCACACAC 59.968 55.000 20.43 1.36 46.66 3.82
1817 2329 3.853355 AAATTTGAAACCCATGGTGCA 57.147 38.095 11.73 0.00 35.34 4.57
1838 2350 4.910195 ACATTTACTCTGGATGCAGTTCA 58.090 39.130 14.43 0.00 0.00 3.18
1862 2374 5.681639 ACAAATATTTAGGAACCGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
1863 2375 5.427481 AGACAAATATTTAGGAACCGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
1864 2376 5.681639 AGACAAATATTTAGGAACCGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
1865 2377 7.553044 AGAAAGACAAATATTTAGGAACCGAGG 59.447 37.037 0.00 0.00 0.00 4.63
1866 2378 8.494016 AGAAAGACAAATATTTAGGAACCGAG 57.506 34.615 0.00 0.00 0.00 4.63
1867 2379 9.595823 CTAGAAAGACAAATATTTAGGAACCGA 57.404 33.333 0.00 0.00 0.00 4.69
1868 2380 9.595823 TCTAGAAAGACAAATATTTAGGAACCG 57.404 33.333 0.00 0.00 0.00 4.44
1883 2395 9.996554 TCACTTGTTGAAATATCTAGAAAGACA 57.003 29.630 0.00 0.00 33.57 3.41
1892 2404 9.302345 CGTATGTAGTCACTTGTTGAAATATCT 57.698 33.333 0.00 0.00 35.39 1.98
1893 2405 8.540492 CCGTATGTAGTCACTTGTTGAAATATC 58.460 37.037 0.00 0.00 35.39 1.63
1894 2406 8.255206 TCCGTATGTAGTCACTTGTTGAAATAT 58.745 33.333 0.00 0.00 35.39 1.28
1895 2407 7.604549 TCCGTATGTAGTCACTTGTTGAAATA 58.395 34.615 0.00 0.00 35.39 1.40
1896 2408 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
1897 2409 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
1898 2410 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
1899 2411 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
1900 2412 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
1901 2413 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
1902 2414 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
1903 2415 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
1904 2416 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
1905 2417 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
1906 2418 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
1907 2419 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
1908 2420 4.025647 GCTCATTTTGCTCCGTATGTAGTC 60.026 45.833 0.00 0.00 0.00 2.59
1909 2421 3.871594 GCTCATTTTGCTCCGTATGTAGT 59.128 43.478 0.00 0.00 0.00 2.73
1910 2422 3.060272 CGCTCATTTTGCTCCGTATGTAG 60.060 47.826 0.00 0.00 0.00 2.74
1911 2423 2.863740 CGCTCATTTTGCTCCGTATGTA 59.136 45.455 0.00 0.00 0.00 2.29
1912 2424 1.665679 CGCTCATTTTGCTCCGTATGT 59.334 47.619 0.00 0.00 0.00 2.29
1913 2425 1.933181 TCGCTCATTTTGCTCCGTATG 59.067 47.619 0.00 0.00 0.00 2.39
1914 2426 2.309528 TCGCTCATTTTGCTCCGTAT 57.690 45.000 0.00 0.00 0.00 3.06
1915 2427 2.087501 TTCGCTCATTTTGCTCCGTA 57.912 45.000 0.00 0.00 0.00 4.02
1916 2428 1.398390 GATTCGCTCATTTTGCTCCGT 59.602 47.619 0.00 0.00 0.00 4.69
1917 2429 1.667724 AGATTCGCTCATTTTGCTCCG 59.332 47.619 0.00 0.00 0.00 4.63
1918 2430 4.781071 CATAGATTCGCTCATTTTGCTCC 58.219 43.478 0.00 0.00 0.00 4.70
1919 2431 4.024218 AGCATAGATTCGCTCATTTTGCTC 60.024 41.667 0.00 0.00 31.16 4.26
1920 2432 3.881688 AGCATAGATTCGCTCATTTTGCT 59.118 39.130 0.00 0.00 31.16 3.91
1921 2433 4.220533 AGCATAGATTCGCTCATTTTGC 57.779 40.909 0.00 0.00 31.16 3.68
1929 2441 6.989169 AGACATTTTTAGAGCATAGATTCGCT 59.011 34.615 0.00 0.00 42.42 4.93
1930 2442 7.183580 AGACATTTTTAGAGCATAGATTCGC 57.816 36.000 0.00 0.00 0.00 4.70
1931 2443 9.249457 TGTAGACATTTTTAGAGCATAGATTCG 57.751 33.333 0.00 0.00 0.00 3.34
1938 2450 9.277783 GGATGTATGTAGACATTTTTAGAGCAT 57.722 33.333 0.00 0.00 40.18 3.79
1939 2451 7.438160 CGGATGTATGTAGACATTTTTAGAGCA 59.562 37.037 0.00 0.00 40.18 4.26
1940 2452 7.438459 ACGGATGTATGTAGACATTTTTAGAGC 59.562 37.037 0.00 0.00 40.18 4.09
1941 2453 8.873215 ACGGATGTATGTAGACATTTTTAGAG 57.127 34.615 0.00 0.00 40.18 2.43
1942 2454 9.740239 GTACGGATGTATGTAGACATTTTTAGA 57.260 33.333 0.00 0.00 40.18 2.10
1943 2455 9.524106 TGTACGGATGTATGTAGACATTTTTAG 57.476 33.333 0.00 0.00 40.18 1.85
1945 2457 8.826710 CATGTACGGATGTATGTAGACATTTTT 58.173 33.333 0.00 0.00 40.18 1.94
1946 2458 7.441157 CCATGTACGGATGTATGTAGACATTTT 59.559 37.037 0.00 0.00 40.18 1.82
1947 2459 6.929049 CCATGTACGGATGTATGTAGACATTT 59.071 38.462 0.00 0.00 40.18 2.32
1948 2460 6.041637 ACCATGTACGGATGTATGTAGACATT 59.958 38.462 0.00 0.00 40.18 2.71
1949 2461 5.538813 ACCATGTACGGATGTATGTAGACAT 59.461 40.000 0.08 0.08 42.82 3.06
1950 2462 4.891168 ACCATGTACGGATGTATGTAGACA 59.109 41.667 0.00 0.00 32.11 3.41
1951 2463 5.449107 ACCATGTACGGATGTATGTAGAC 57.551 43.478 0.00 0.00 32.11 2.59
1952 2464 6.301486 ACTACCATGTACGGATGTATGTAGA 58.699 40.000 11.60 0.00 32.11 2.59
1953 2465 6.349115 GGACTACCATGTACGGATGTATGTAG 60.349 46.154 0.00 0.00 35.97 2.74
1954 2466 5.474532 GGACTACCATGTACGGATGTATGTA 59.525 44.000 0.00 0.00 35.97 2.29
1955 2467 4.280174 GGACTACCATGTACGGATGTATGT 59.720 45.833 0.00 0.00 35.97 2.29
1956 2468 4.279922 TGGACTACCATGTACGGATGTATG 59.720 45.833 0.00 0.00 41.77 2.39
1957 2469 4.476297 TGGACTACCATGTACGGATGTAT 58.524 43.478 0.00 0.00 41.77 2.29
1958 2470 3.900971 TGGACTACCATGTACGGATGTA 58.099 45.455 0.00 0.00 41.77 2.29
1959 2471 2.742348 TGGACTACCATGTACGGATGT 58.258 47.619 0.00 0.00 41.77 3.06
1974 2486 9.739276 TGTCTTTCTATACATTTCAAATGGACT 57.261 29.630 14.70 1.43 0.00 3.85
1991 2503 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
1992 2504 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
1993 2505 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
1994 2506 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
1995 2507 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
1996 2508 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
1997 2509 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
1998 2510 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
1999 2511 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2000 2512 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2001 2513 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
2002 2514 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
2003 2515 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
2004 2516 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
2005 2517 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
2006 2518 3.463048 AACTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
2007 2519 3.094572 CAAACTACTCCCTCCGTTCCTA 58.905 50.000 0.00 0.00 0.00 2.94
2008 2520 1.900486 CAAACTACTCCCTCCGTTCCT 59.100 52.381 0.00 0.00 0.00 3.36
2009 2521 1.675116 GCAAACTACTCCCTCCGTTCC 60.675 57.143 0.00 0.00 0.00 3.62
2010 2522 1.001633 TGCAAACTACTCCCTCCGTTC 59.998 52.381 0.00 0.00 0.00 3.95
2011 2523 1.053424 TGCAAACTACTCCCTCCGTT 58.947 50.000 0.00 0.00 0.00 4.44
2012 2524 1.066143 CATGCAAACTACTCCCTCCGT 60.066 52.381 0.00 0.00 0.00 4.69
2013 2525 1.207089 TCATGCAAACTACTCCCTCCG 59.793 52.381 0.00 0.00 0.00 4.63
2014 2526 2.501723 TCTCATGCAAACTACTCCCTCC 59.498 50.000 0.00 0.00 0.00 4.30
2015 2527 3.196685 AGTCTCATGCAAACTACTCCCTC 59.803 47.826 0.00 0.00 0.00 4.30
2016 2528 3.055530 CAGTCTCATGCAAACTACTCCCT 60.056 47.826 0.00 0.00 0.00 4.20
2017 2529 3.265791 CAGTCTCATGCAAACTACTCCC 58.734 50.000 0.00 0.00 0.00 4.30
2018 2530 3.265791 CCAGTCTCATGCAAACTACTCC 58.734 50.000 0.00 0.00 0.00 3.85
2019 2531 3.929610 GACCAGTCTCATGCAAACTACTC 59.070 47.826 0.00 0.00 0.00 2.59
2020 2532 3.615110 CGACCAGTCTCATGCAAACTACT 60.615 47.826 0.00 0.00 0.00 2.57
2021 2533 2.668457 CGACCAGTCTCATGCAAACTAC 59.332 50.000 0.00 0.00 0.00 2.73
2041 2553 3.990469 GGTGCCATTCATATAGTCTGTCG 59.010 47.826 0.00 0.00 0.00 4.35
2043 2555 5.513788 GGATGGTGCCATTCATATAGTCTGT 60.514 44.000 5.08 0.00 36.70 3.41
2044 2556 4.940046 GGATGGTGCCATTCATATAGTCTG 59.060 45.833 5.08 0.00 36.70 3.51
2083 2601 2.742372 GATGGTGCTTGCCGTCGT 60.742 61.111 0.00 0.00 35.16 4.34
2089 2607 3.058160 ACTGCCGATGGTGCTTGC 61.058 61.111 0.00 0.00 0.00 4.01
2104 2622 3.753434 CTCTGCTCGGCCGTCACT 61.753 66.667 27.15 0.00 0.00 3.41
2120 2638 3.991683 ACCCGTACCTTAATCTTCTCCT 58.008 45.455 0.00 0.00 0.00 3.69
2125 2643 7.330262 TCGATTTTTACCCGTACCTTAATCTT 58.670 34.615 0.00 0.00 0.00 2.40
2140 2658 7.011202 GGAGTGGAAGAACCTATCGATTTTTAC 59.989 40.741 1.71 0.00 39.86 2.01
2180 2698 4.100653 TCCACATGAAGCAACAATTTTGGA 59.899 37.500 0.00 0.00 0.00 3.53
2182 2700 5.987777 TTCCACATGAAGCAACAATTTTG 57.012 34.783 0.00 0.00 0.00 2.44
2183 2701 6.998968 TTTTCCACATGAAGCAACAATTTT 57.001 29.167 0.00 0.00 33.63 1.82
2188 2706 5.273674 TGAATTTTCCACATGAAGCAACA 57.726 34.783 0.00 0.00 33.63 3.33
2193 2711 9.362539 CCTAGATTTTGAATTTTCCACATGAAG 57.637 33.333 0.00 0.00 33.63 3.02
2204 2722 5.779771 TGTTGCCTCCCTAGATTTTGAATTT 59.220 36.000 0.00 0.00 0.00 1.82
2212 2750 1.407437 CGCTTGTTGCCTCCCTAGATT 60.407 52.381 0.00 0.00 38.78 2.40
2217 2755 2.032681 GACGCTTGTTGCCTCCCT 59.967 61.111 0.00 0.00 38.78 4.20
2221 2759 1.302033 CTCCAGACGCTTGTTGCCT 60.302 57.895 0.00 0.00 38.78 4.75
2232 2770 2.351157 GCACAAAGTTGATGCTCCAGAC 60.351 50.000 0.00 0.00 34.58 3.51
2233 2771 1.881973 GCACAAAGTTGATGCTCCAGA 59.118 47.619 0.00 0.00 34.58 3.86
2242 2780 2.106338 TCCTCATCTGGCACAAAGTTGA 59.894 45.455 0.00 0.00 38.70 3.18
2279 2817 5.862924 TGAAAGATTTTGAGCTAACCTCG 57.137 39.130 0.00 0.00 43.82 4.63
2280 2818 8.184848 GGTTATGAAAGATTTTGAGCTAACCTC 58.815 37.037 0.00 0.00 41.15 3.85
2281 2819 7.669722 TGGTTATGAAAGATTTTGAGCTAACCT 59.330 33.333 0.00 0.00 37.52 3.50
2282 2820 7.826690 TGGTTATGAAAGATTTTGAGCTAACC 58.173 34.615 0.00 0.00 37.28 2.85
2283 2821 9.860898 AATGGTTATGAAAGATTTTGAGCTAAC 57.139 29.630 0.00 0.00 0.00 2.34
2286 2824 7.178983 TCCAATGGTTATGAAAGATTTTGAGCT 59.821 33.333 0.00 0.00 0.00 4.09
2287 2825 7.322664 TCCAATGGTTATGAAAGATTTTGAGC 58.677 34.615 0.00 0.00 0.00 4.26
2288 2826 9.709495 TTTCCAATGGTTATGAAAGATTTTGAG 57.291 29.630 0.00 0.00 0.00 3.02
2303 2841 6.666113 ACGGGAATTAACTATTTCCAATGGTT 59.334 34.615 0.00 4.00 41.46 3.67
2304 2842 6.096282 CACGGGAATTAACTATTTCCAATGGT 59.904 38.462 0.00 0.00 41.46 3.55
2327 2865 7.656137 TGGTGTTTACAGAGATCTTTTAGACAC 59.344 37.037 16.66 16.66 32.15 3.67
2333 2871 7.339466 ACAGTTTGGTGTTTACAGAGATCTTTT 59.661 33.333 0.00 0.00 0.00 2.27
2334 2872 6.828785 ACAGTTTGGTGTTTACAGAGATCTTT 59.171 34.615 0.00 0.00 0.00 2.52
2364 2904 1.376812 CACTTCCCCCTGGTTACGC 60.377 63.158 0.00 0.00 0.00 4.42
2375 2915 2.104963 GGGTCCTGATGTATCACTTCCC 59.895 54.545 7.34 7.34 32.50 3.97
2400 2940 3.119602 CCATCTCTGCAATCAGTTTGGTG 60.120 47.826 0.00 0.00 41.10 4.17
2401 2941 3.087031 CCATCTCTGCAATCAGTTTGGT 58.913 45.455 0.00 0.00 41.10 3.67
2402 2942 3.349927 TCCATCTCTGCAATCAGTTTGG 58.650 45.455 0.00 0.00 41.10 3.28
2403 2943 4.698780 TCTTCCATCTCTGCAATCAGTTTG 59.301 41.667 0.00 0.00 41.10 2.93
2404 2944 4.914983 TCTTCCATCTCTGCAATCAGTTT 58.085 39.130 0.00 0.00 41.10 2.66
2405 2945 4.564782 TCTTCCATCTCTGCAATCAGTT 57.435 40.909 0.00 0.00 41.10 3.16
2406 2946 4.564782 TTCTTCCATCTCTGCAATCAGT 57.435 40.909 0.00 0.00 41.10 3.41
2426 2972 1.106285 GCCAGAATCCGCTCCATTTT 58.894 50.000 0.00 0.00 0.00 1.82
2427 2973 0.753111 GGCCAGAATCCGCTCCATTT 60.753 55.000 0.00 0.00 0.00 2.32
2428 2974 1.152881 GGCCAGAATCCGCTCCATT 60.153 57.895 0.00 0.00 0.00 3.16
2429 2975 2.074948 AGGCCAGAATCCGCTCCAT 61.075 57.895 5.01 0.00 0.00 3.41
2430 2976 2.688666 AGGCCAGAATCCGCTCCA 60.689 61.111 5.01 0.00 0.00 3.86
2431 2977 2.203126 CAGGCCAGAATCCGCTCC 60.203 66.667 5.01 0.00 0.00 4.70
2432 2978 2.203126 CCAGGCCAGAATCCGCTC 60.203 66.667 5.01 0.00 0.00 5.03
2433 2979 2.262774 CTTCCAGGCCAGAATCCGCT 62.263 60.000 5.01 0.00 0.00 5.52
2434 2980 1.821332 CTTCCAGGCCAGAATCCGC 60.821 63.158 5.01 0.00 0.00 5.54
2435 2981 0.253044 TTCTTCCAGGCCAGAATCCG 59.747 55.000 5.01 0.00 0.00 4.18
2436 2982 1.409381 CCTTCTTCCAGGCCAGAATCC 60.409 57.143 5.01 0.00 0.00 3.01
2459 3005 2.852449 CTGCAGGATCATTCTCAGCAT 58.148 47.619 5.57 0.00 0.00 3.79
2460 3006 1.746171 GCTGCAGGATCATTCTCAGCA 60.746 52.381 17.12 5.44 44.36 4.41
2463 3009 1.558294 ACAGCTGCAGGATCATTCTCA 59.442 47.619 17.12 0.00 0.00 3.27
2567 3113 9.799106 AAAATAGAATACTACCCAATGGATCAG 57.201 33.333 0.00 0.00 34.81 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.