Multiple sequence alignment - TraesCS2B01G584900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G584900 chr2B 100.000 2949 0 0 1 2949 771925305 771922357 0.000000e+00 5446.0
1 TraesCS2B01G584900 chr2B 77.312 1287 222 41 1024 2295 771160328 771159097 0.000000e+00 695.0
2 TraesCS2B01G584900 chr2B 89.858 424 40 2 2527 2949 768334460 768334039 2.940000e-150 542.0
3 TraesCS2B01G584900 chr2B 83.072 573 79 9 993 1556 770745779 770746342 3.860000e-139 505.0
4 TraesCS2B01G584900 chr2B 81.895 475 59 14 1041 1503 79324685 79324226 3.150000e-100 375.0
5 TraesCS2B01G584900 chr2B 100.000 48 0 0 3302 3349 771922004 771921957 4.600000e-14 89.8
6 TraesCS2B01G584900 chr2D 93.652 1654 63 10 750 2365 628642827 628644476 0.000000e+00 2435.0
7 TraesCS2B01G584900 chr2D 89.605 760 41 9 1 756 628640917 628641642 0.000000e+00 931.0
8 TraesCS2B01G584900 chr2D 76.330 1297 225 55 993 2250 628016288 628015035 1.320000e-173 619.0
9 TraesCS2B01G584900 chr2D 90.676 429 39 1 2521 2949 124474721 124475148 1.350000e-158 569.0
10 TraesCS2B01G584900 chr2D 74.522 1413 244 71 999 2382 628258354 628259679 2.980000e-140 508.0
11 TraesCS2B01G584900 chr2D 77.058 911 167 25 1033 1935 628581719 628580843 1.400000e-133 486.0
12 TraesCS2B01G584900 chr2D 80.761 473 74 7 1041 1500 51092126 51092594 1.480000e-93 353.0
13 TraesCS2B01G584900 chr2D 78.764 259 43 7 2070 2325 628327518 628327767 2.670000e-36 163.0
14 TraesCS2B01G584900 chr2D 95.402 87 3 1 2353 2438 628655040 628655126 1.620000e-28 137.0
15 TraesCS2B01G584900 chr2A 95.426 1421 59 3 1020 2436 758713400 758711982 0.000000e+00 2259.0
16 TraesCS2B01G584900 chr2A 76.436 1375 251 42 1033 2389 758583322 758584641 0.000000e+00 676.0
17 TraesCS2B01G584900 chr2A 76.783 1318 235 39 993 2295 758526665 758525404 0.000000e+00 673.0
18 TraesCS2B01G584900 chr2A 76.705 953 170 32 1002 1925 758409373 758410302 1.810000e-132 483.0
19 TraesCS2B01G584900 chr2A 92.222 270 16 2 514 783 758713781 758713517 8.770000e-101 377.0
20 TraesCS2B01G584900 chr2A 88.211 246 17 5 1 246 758714017 758713784 1.970000e-72 283.0
21 TraesCS2B01G584900 chr2A 94.048 84 5 0 836 919 758713501 758713418 9.750000e-26 128.0
22 TraesCS2B01G584900 chr1A 91.274 424 35 2 2527 2949 568388227 568388649 8.060000e-161 577.0
23 TraesCS2B01G584900 chr4D 90.780 423 37 2 2527 2949 447285733 447286153 6.270000e-157 564.0
24 TraesCS2B01G584900 chr5D 75.000 1376 263 51 1037 2387 15563721 15562402 8.110000e-156 560.0
25 TraesCS2B01G584900 chr7A 90.047 422 39 3 2528 2949 195734614 195734196 8.170000e-151 544.0
26 TraesCS2B01G584900 chr5A 89.835 423 41 1 2527 2949 641735552 641735972 2.940000e-150 542.0
27 TraesCS2B01G584900 chr1B 90.000 420 41 1 2528 2947 655622040 655622458 2.940000e-150 542.0
28 TraesCS2B01G584900 chr3A 89.461 427 44 1 2524 2949 191006642 191007068 3.800000e-149 538.0
29 TraesCS2B01G584900 chr4A 89.352 432 39 6 2522 2949 687426005 687425577 1.370000e-148 536.0
30 TraesCS2B01G584900 chr4A 97.917 48 1 0 3302 3349 612687881 612687928 2.140000e-12 84.2
31 TraesCS2B01G584900 chr4A 97.917 48 1 0 3302 3349 657112748 657112701 2.140000e-12 84.2
32 TraesCS2B01G584900 chr4A 97.917 48 1 0 3302 3349 683164852 683164899 2.140000e-12 84.2
33 TraesCS2B01G584900 chr5B 79.915 234 28 7 151 366 492405985 492406217 1.610000e-33 154.0
34 TraesCS2B01G584900 chrUn 97.917 48 1 0 3302 3349 20572821 20572774 2.140000e-12 84.2
35 TraesCS2B01G584900 chr6D 97.917 48 1 0 3302 3349 418556202 418556155 2.140000e-12 84.2
36 TraesCS2B01G584900 chr4B 97.917 48 1 0 3302 3349 600934991 600935038 2.140000e-12 84.2
37 TraesCS2B01G584900 chr3D 97.917 48 1 0 3302 3349 522074901 522074854 2.140000e-12 84.2
38 TraesCS2B01G584900 chr1D 97.917 48 1 0 3302 3349 1360937 1360984 2.140000e-12 84.2
39 TraesCS2B01G584900 chr1D 97.917 48 1 0 3302 3349 70492586 70492539 2.140000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G584900 chr2B 771921957 771925305 3348 True 2767.90 5446 100.00000 1 3349 2 chr2B.!!$R4 3348
1 TraesCS2B01G584900 chr2B 771159097 771160328 1231 True 695.00 695 77.31200 1024 2295 1 chr2B.!!$R3 1271
2 TraesCS2B01G584900 chr2B 770745779 770746342 563 False 505.00 505 83.07200 993 1556 1 chr2B.!!$F1 563
3 TraesCS2B01G584900 chr2D 628640917 628644476 3559 False 1683.00 2435 91.62850 1 2365 2 chr2D.!!$F6 2364
4 TraesCS2B01G584900 chr2D 628015035 628016288 1253 True 619.00 619 76.33000 993 2250 1 chr2D.!!$R1 1257
5 TraesCS2B01G584900 chr2D 628258354 628259679 1325 False 508.00 508 74.52200 999 2382 1 chr2D.!!$F3 1383
6 TraesCS2B01G584900 chr2D 628580843 628581719 876 True 486.00 486 77.05800 1033 1935 1 chr2D.!!$R2 902
7 TraesCS2B01G584900 chr2A 758711982 758714017 2035 True 761.75 2259 92.47675 1 2436 4 chr2A.!!$R2 2435
8 TraesCS2B01G584900 chr2A 758583322 758584641 1319 False 676.00 676 76.43600 1033 2389 1 chr2A.!!$F2 1356
9 TraesCS2B01G584900 chr2A 758525404 758526665 1261 True 673.00 673 76.78300 993 2295 1 chr2A.!!$R1 1302
10 TraesCS2B01G584900 chr2A 758409373 758410302 929 False 483.00 483 76.70500 1002 1925 1 chr2A.!!$F1 923
11 TraesCS2B01G584900 chr5D 15562402 15563721 1319 True 560.00 560 75.00000 1037 2387 1 chr5D.!!$R1 1350

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
407 411 0.333652 TACCCCTCTGTCATCGTCCA 59.666 55.0 0.0 0.0 0.0 4.02 F
424 428 0.392595 CCAAAGCGAAGGGGTAGGTC 60.393 60.0 0.0 0.0 0.0 3.85 F
1999 3325 0.034198 TTCGACGAAGCAATGGTGGA 59.966 50.0 6.1 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1982 3305 0.443869 CTTCCACCATTGCTTCGTCG 59.556 55.0 0.00 0.00 0.00 5.12 R
2165 3494 1.098050 GCAGGAATGAGCCGTGAAAT 58.902 50.0 0.00 0.00 0.00 2.17 R
2915 4247 0.039708 TGCATCGCGATTTGTGCAAA 60.040 45.0 27.46 9.97 43.83 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.488705 CCAAGCCCACTGGTCAGGTA 61.489 60.000 2.87 0.00 0.00 3.08
39 40 1.481056 GCCCACTGGTCAGGTACACT 61.481 60.000 2.87 0.00 0.00 3.55
80 81 5.289675 CACCGTTTGCATTGACTGTTAAAAA 59.710 36.000 0.00 0.00 0.00 1.94
156 157 1.022735 CCGCGTACTCTACCTCATGT 58.977 55.000 4.92 0.00 0.00 3.21
184 185 2.415010 CCCGCCACATCTCTCTCG 59.585 66.667 0.00 0.00 0.00 4.04
186 187 2.279120 CGCCACATCTCTCTCGCC 60.279 66.667 0.00 0.00 0.00 5.54
187 188 2.895680 GCCACATCTCTCTCGCCA 59.104 61.111 0.00 0.00 0.00 5.69
188 189 1.445095 GCCACATCTCTCTCGCCAT 59.555 57.895 0.00 0.00 0.00 4.40
213 217 0.486879 CCCCTCTCTCTCCTGCCTAT 59.513 60.000 0.00 0.00 0.00 2.57
246 250 2.604139 CTCCATCTCTTCTCCCTACCC 58.396 57.143 0.00 0.00 0.00 3.69
295 299 2.273449 CCCCACACTGGATCTGGC 59.727 66.667 0.00 0.00 40.96 4.85
299 303 1.448540 CACACTGGATCTGGCGGTC 60.449 63.158 0.00 0.00 0.00 4.79
300 304 2.187946 CACTGGATCTGGCGGTCC 59.812 66.667 7.70 7.70 35.02 4.46
301 305 3.083997 ACTGGATCTGGCGGTCCC 61.084 66.667 11.00 6.24 33.45 4.46
302 306 2.765807 CTGGATCTGGCGGTCCCT 60.766 66.667 11.00 0.00 33.45 4.20
303 307 2.764128 TGGATCTGGCGGTCCCTC 60.764 66.667 11.00 0.00 33.45 4.30
304 308 3.551407 GGATCTGGCGGTCCCTCC 61.551 72.222 0.00 0.00 0.00 4.30
305 309 3.551407 GATCTGGCGGTCCCTCCC 61.551 72.222 0.00 0.00 0.00 4.30
336 340 1.831652 CTGACGAGCTTTGTCCCCCT 61.832 60.000 15.08 0.00 35.46 4.79
406 410 1.033574 CTACCCCTCTGTCATCGTCC 58.966 60.000 0.00 0.00 0.00 4.79
407 411 0.333652 TACCCCTCTGTCATCGTCCA 59.666 55.000 0.00 0.00 0.00 4.02
423 427 0.838987 TCCAAAGCGAAGGGGTAGGT 60.839 55.000 0.00 0.00 0.00 3.08
424 428 0.392595 CCAAAGCGAAGGGGTAGGTC 60.393 60.000 0.00 0.00 0.00 3.85
425 429 0.392595 CAAAGCGAAGGGGTAGGTCC 60.393 60.000 0.00 0.00 0.00 4.46
426 430 0.838987 AAAGCGAAGGGGTAGGTCCA 60.839 55.000 0.00 0.00 38.11 4.02
427 431 0.838987 AAGCGAAGGGGTAGGTCCAA 60.839 55.000 0.00 0.00 38.11 3.53
428 432 0.838987 AGCGAAGGGGTAGGTCCAAA 60.839 55.000 0.00 0.00 38.11 3.28
429 433 0.392595 GCGAAGGGGTAGGTCCAAAG 60.393 60.000 0.00 0.00 38.11 2.77
430 434 0.392595 CGAAGGGGTAGGTCCAAAGC 60.393 60.000 0.00 0.00 38.11 3.51
431 435 0.392595 GAAGGGGTAGGTCCAAAGCG 60.393 60.000 0.00 0.00 38.11 4.68
432 436 0.838987 AAGGGGTAGGTCCAAAGCGA 60.839 55.000 0.00 0.00 38.11 4.93
433 437 0.838987 AGGGGTAGGTCCAAAGCGAA 60.839 55.000 0.00 0.00 38.11 4.70
434 438 0.392595 GGGGTAGGTCCAAAGCGAAG 60.393 60.000 0.00 0.00 38.11 3.79
435 439 0.392595 GGGTAGGTCCAAAGCGAAGG 60.393 60.000 0.00 0.00 38.11 3.46
436 440 0.392595 GGTAGGTCCAAAGCGAAGGG 60.393 60.000 0.00 0.00 35.97 3.95
437 441 0.392595 GTAGGTCCAAAGCGAAGGGG 60.393 60.000 0.00 0.00 0.00 4.79
438 442 0.838987 TAGGTCCAAAGCGAAGGGGT 60.839 55.000 0.00 0.00 0.00 4.95
439 443 0.838987 AGGTCCAAAGCGAAGGGGTA 60.839 55.000 0.00 0.00 0.00 3.69
440 444 0.392595 GGTCCAAAGCGAAGGGGTAG 60.393 60.000 0.00 0.00 0.00 3.18
441 445 0.392595 GTCCAAAGCGAAGGGGTAGG 60.393 60.000 0.00 0.00 0.00 3.18
469 473 4.501229 GGTCTCATAGCTCAGATGTGAAGG 60.501 50.000 0.00 0.00 30.83 3.46
471 475 2.103771 TCATAGCTCAGATGTGAAGGGC 59.896 50.000 0.00 0.00 30.14 5.19
486 490 2.348411 AGGGCGAATGAATTAGGGTG 57.652 50.000 0.00 0.00 0.00 4.61
525 529 3.450096 TGACCATCTGAGACTGAGAATGG 59.550 47.826 14.39 14.39 0.00 3.16
613 617 6.127730 TGTTGTTTCTCTCCTTCAGGTTTTTC 60.128 38.462 0.00 0.00 36.34 2.29
631 635 6.366061 GGTTTTTCTTTCATGATGCTACAACC 59.634 38.462 0.00 2.59 0.00 3.77
801 1996 3.687572 TTTTTGTTAACGTTGCCGCTA 57.312 38.095 11.99 0.00 37.70 4.26
861 2059 6.834168 TTTTTGTCAGATAACCCCATCTTC 57.166 37.500 0.00 0.00 32.83 2.87
898 2097 1.394618 TTCCTGAACAAAACACCGGG 58.605 50.000 6.32 0.00 0.00 5.73
976 2196 0.958382 TGCAGCCCATTTACACCGTC 60.958 55.000 0.00 0.00 0.00 4.79
978 2198 1.078708 AGCCCATTTACACCGTCGG 60.079 57.895 10.48 10.48 0.00 4.79
979 2199 2.757056 GCCCATTTACACCGTCGGC 61.757 63.158 12.28 0.00 0.00 5.54
980 2200 1.078708 CCCATTTACACCGTCGGCT 60.079 57.895 12.28 0.00 0.00 5.52
983 2203 0.999406 CATTTACACCGTCGGCTCAG 59.001 55.000 12.28 1.38 0.00 3.35
991 2223 1.516386 CGTCGGCTCAGTTACGCAT 60.516 57.895 0.00 0.00 0.00 4.73
1153 2388 2.920912 TCCTTCCGCCACCTCGTT 60.921 61.111 0.00 0.00 0.00 3.85
1155 2390 2.030562 CTTCCGCCACCTCGTTGT 59.969 61.111 0.00 0.00 0.00 3.32
1195 2430 2.525629 TTCCGCAGACTCCACCCA 60.526 61.111 0.00 0.00 0.00 4.51
1407 2666 4.697756 CTCCGGCAAGGGACGCAA 62.698 66.667 0.00 0.00 46.86 4.85
1801 3093 3.037549 TGCAGGTTGGAGTGGAAAATTT 58.962 40.909 0.00 0.00 0.00 1.82
1861 3153 2.125106 CGCCCACCCAGAGTTAGC 60.125 66.667 0.00 0.00 0.00 3.09
1939 3235 1.067516 GTGCCTGCACATGACAAAGTT 59.932 47.619 16.95 0.00 45.53 2.66
1982 3305 7.140048 CACAGTTCTCCTTAGATATACCGTTC 58.860 42.308 0.00 0.00 0.00 3.95
1999 3325 0.034198 TTCGACGAAGCAATGGTGGA 59.966 50.000 6.10 0.00 0.00 4.02
2165 3494 3.398318 TCCAGCTTGAGAGGGTATGTA 57.602 47.619 0.00 0.00 0.00 2.29
2409 3741 2.283884 GCTAGTTCAATCGCTTCTCAGC 59.716 50.000 0.00 0.00 43.41 4.26
2433 3765 6.670927 GCGTTGATCTGATTTCTGTGAGTTAC 60.671 42.308 0.00 0.00 0.00 2.50
2436 3768 7.009179 TGATCTGATTTCTGTGAGTTACCTT 57.991 36.000 0.00 0.00 0.00 3.50
2437 3769 7.099764 TGATCTGATTTCTGTGAGTTACCTTC 58.900 38.462 0.00 0.00 0.00 3.46
2438 3770 5.470368 TCTGATTTCTGTGAGTTACCTTCG 58.530 41.667 0.00 0.00 0.00 3.79
2439 3771 5.243060 TCTGATTTCTGTGAGTTACCTTCGA 59.757 40.000 0.00 0.00 0.00 3.71
2440 3772 5.470368 TGATTTCTGTGAGTTACCTTCGAG 58.530 41.667 0.00 0.00 0.00 4.04
2441 3773 3.936372 TTCTGTGAGTTACCTTCGAGG 57.064 47.619 0.03 0.03 42.49 4.63
2442 3774 2.168496 TCTGTGAGTTACCTTCGAGGG 58.832 52.381 12.81 12.81 40.58 4.30
2443 3775 2.168496 CTGTGAGTTACCTTCGAGGGA 58.832 52.381 22.01 0.47 40.58 4.20
2444 3776 2.761208 CTGTGAGTTACCTTCGAGGGAT 59.239 50.000 22.01 7.22 40.58 3.85
2445 3777 2.758979 TGTGAGTTACCTTCGAGGGATC 59.241 50.000 22.01 12.31 40.58 3.36
2446 3778 3.025262 GTGAGTTACCTTCGAGGGATCT 58.975 50.000 22.01 14.10 40.58 2.75
2447 3779 4.205587 GTGAGTTACCTTCGAGGGATCTA 58.794 47.826 22.01 0.00 40.58 1.98
2448 3780 4.276431 GTGAGTTACCTTCGAGGGATCTAG 59.724 50.000 22.01 0.00 40.58 2.43
2449 3781 4.165565 TGAGTTACCTTCGAGGGATCTAGA 59.834 45.833 22.01 0.00 40.58 2.43
2450 3782 4.721132 AGTTACCTTCGAGGGATCTAGAG 58.279 47.826 22.01 0.00 40.58 2.43
2451 3783 4.412858 AGTTACCTTCGAGGGATCTAGAGA 59.587 45.833 22.01 0.00 40.58 3.10
2452 3784 5.073965 AGTTACCTTCGAGGGATCTAGAGAT 59.926 44.000 22.01 0.00 40.58 2.75
2453 3785 4.463050 ACCTTCGAGGGATCTAGAGATT 57.537 45.455 22.01 0.00 40.58 2.40
2454 3786 4.810345 ACCTTCGAGGGATCTAGAGATTT 58.190 43.478 22.01 0.00 40.58 2.17
2455 3787 5.212745 ACCTTCGAGGGATCTAGAGATTTT 58.787 41.667 22.01 0.00 40.58 1.82
2456 3788 5.663556 ACCTTCGAGGGATCTAGAGATTTTT 59.336 40.000 22.01 0.00 40.58 1.94
2478 3810 2.634982 TTTCATCCAAGCATGAACGC 57.365 45.000 0.00 0.00 41.52 4.84
2479 3811 1.532523 TTCATCCAAGCATGAACGCA 58.467 45.000 0.00 0.00 37.77 5.24
2480 3812 0.804364 TCATCCAAGCATGAACGCAC 59.196 50.000 0.00 0.00 29.41 5.34
2481 3813 0.806868 CATCCAAGCATGAACGCACT 59.193 50.000 0.00 0.00 0.00 4.40
2482 3814 0.806868 ATCCAAGCATGAACGCACTG 59.193 50.000 0.00 0.00 0.00 3.66
2483 3815 0.534877 TCCAAGCATGAACGCACTGT 60.535 50.000 0.00 0.00 0.00 3.55
2484 3816 0.311790 CCAAGCATGAACGCACTGTT 59.688 50.000 0.00 0.00 45.61 3.16
2485 3817 1.269206 CCAAGCATGAACGCACTGTTT 60.269 47.619 0.00 0.00 42.09 2.83
2486 3818 2.046313 CAAGCATGAACGCACTGTTTC 58.954 47.619 0.00 0.00 42.09 2.78
2487 3819 0.593128 AGCATGAACGCACTGTTTCC 59.407 50.000 0.00 0.00 42.09 3.13
2488 3820 0.310543 GCATGAACGCACTGTTTCCA 59.689 50.000 0.00 0.00 42.09 3.53
2489 3821 1.068333 GCATGAACGCACTGTTTCCAT 60.068 47.619 0.00 0.00 42.09 3.41
2490 3822 2.607771 GCATGAACGCACTGTTTCCATT 60.608 45.455 0.00 0.00 42.09 3.16
2491 3823 3.641648 CATGAACGCACTGTTTCCATTT 58.358 40.909 0.00 0.00 42.09 2.32
2492 3824 3.077229 TGAACGCACTGTTTCCATTTG 57.923 42.857 0.00 0.00 42.09 2.32
2493 3825 2.685388 TGAACGCACTGTTTCCATTTGA 59.315 40.909 0.00 0.00 42.09 2.69
2494 3826 3.317711 TGAACGCACTGTTTCCATTTGAT 59.682 39.130 0.00 0.00 42.09 2.57
2495 3827 4.202101 TGAACGCACTGTTTCCATTTGATT 60.202 37.500 0.00 0.00 42.09 2.57
2496 3828 3.900941 ACGCACTGTTTCCATTTGATTC 58.099 40.909 0.00 0.00 0.00 2.52
2497 3829 3.569701 ACGCACTGTTTCCATTTGATTCT 59.430 39.130 0.00 0.00 0.00 2.40
2498 3830 4.037923 ACGCACTGTTTCCATTTGATTCTT 59.962 37.500 0.00 0.00 0.00 2.52
2499 3831 4.383649 CGCACTGTTTCCATTTGATTCTTG 59.616 41.667 0.00 0.00 0.00 3.02
2500 3832 5.291971 GCACTGTTTCCATTTGATTCTTGT 58.708 37.500 0.00 0.00 0.00 3.16
2501 3833 5.754890 GCACTGTTTCCATTTGATTCTTGTT 59.245 36.000 0.00 0.00 0.00 2.83
2502 3834 6.292488 GCACTGTTTCCATTTGATTCTTGTTG 60.292 38.462 0.00 0.00 0.00 3.33
2503 3835 6.979817 CACTGTTTCCATTTGATTCTTGTTGA 59.020 34.615 0.00 0.00 0.00 3.18
2504 3836 7.654520 CACTGTTTCCATTTGATTCTTGTTGAT 59.345 33.333 0.00 0.00 0.00 2.57
2505 3837 7.869429 ACTGTTTCCATTTGATTCTTGTTGATC 59.131 33.333 0.00 0.00 0.00 2.92
2506 3838 7.724287 TGTTTCCATTTGATTCTTGTTGATCA 58.276 30.769 0.00 0.00 0.00 2.92
2507 3839 8.202811 TGTTTCCATTTGATTCTTGTTGATCAA 58.797 29.630 3.38 3.38 34.61 2.57
2508 3840 9.044150 GTTTCCATTTGATTCTTGTTGATCAAA 57.956 29.630 10.35 12.25 44.05 2.69
2510 3842 9.781633 TTCCATTTGATTCTTGTTGATCAAATT 57.218 25.926 10.35 0.00 45.80 1.82
2511 3843 9.781633 TCCATTTGATTCTTGTTGATCAAATTT 57.218 25.926 10.35 1.84 45.80 1.82
2529 3861 2.570415 TTTTTATCCCTGTGTGCGGA 57.430 45.000 0.00 0.00 0.00 5.54
2530 3862 1.816074 TTTTATCCCTGTGTGCGGAC 58.184 50.000 0.00 0.00 0.00 4.79
2531 3863 0.390603 TTTATCCCTGTGTGCGGACG 60.391 55.000 1.60 0.00 0.00 4.79
2532 3864 1.537814 TTATCCCTGTGTGCGGACGT 61.538 55.000 1.60 0.00 0.00 4.34
2533 3865 2.220615 TATCCCTGTGTGCGGACGTG 62.221 60.000 1.60 0.00 0.00 4.49
2535 3867 4.293648 CCTGTGTGCGGACGTGGA 62.294 66.667 1.60 0.00 0.00 4.02
2536 3868 2.048222 CTGTGTGCGGACGTGGAT 60.048 61.111 1.60 0.00 0.00 3.41
2537 3869 1.667830 CTGTGTGCGGACGTGGATT 60.668 57.895 1.60 0.00 0.00 3.01
2538 3870 1.227704 TGTGTGCGGACGTGGATTT 60.228 52.632 1.60 0.00 0.00 2.17
2539 3871 0.816018 TGTGTGCGGACGTGGATTTT 60.816 50.000 1.60 0.00 0.00 1.82
2540 3872 0.309612 GTGTGCGGACGTGGATTTTT 59.690 50.000 1.60 0.00 0.00 1.94
2541 3873 1.532007 GTGTGCGGACGTGGATTTTTA 59.468 47.619 1.60 0.00 0.00 1.52
2542 3874 1.801771 TGTGCGGACGTGGATTTTTAG 59.198 47.619 1.60 0.00 0.00 1.85
2543 3875 2.070783 GTGCGGACGTGGATTTTTAGA 58.929 47.619 0.00 0.00 0.00 2.10
2544 3876 2.093783 GTGCGGACGTGGATTTTTAGAG 59.906 50.000 0.00 0.00 0.00 2.43
2545 3877 1.062148 GCGGACGTGGATTTTTAGAGC 59.938 52.381 0.00 0.00 0.00 4.09
2546 3878 2.343101 CGGACGTGGATTTTTAGAGCA 58.657 47.619 0.00 0.00 0.00 4.26
2547 3879 2.093783 CGGACGTGGATTTTTAGAGCAC 59.906 50.000 0.00 0.00 0.00 4.40
2548 3880 2.418976 GGACGTGGATTTTTAGAGCACC 59.581 50.000 0.00 0.00 0.00 5.01
2549 3881 3.335579 GACGTGGATTTTTAGAGCACCT 58.664 45.455 0.00 0.00 0.00 4.00
2550 3882 3.074412 ACGTGGATTTTTAGAGCACCTG 58.926 45.455 0.00 0.00 0.00 4.00
2551 3883 2.159517 CGTGGATTTTTAGAGCACCTGC 60.160 50.000 0.00 0.00 42.49 4.85
2552 3884 2.819608 GTGGATTTTTAGAGCACCTGCA 59.180 45.455 0.00 0.00 45.16 4.41
2553 3885 2.819608 TGGATTTTTAGAGCACCTGCAC 59.180 45.455 0.00 0.00 45.16 4.57
2554 3886 2.164422 GGATTTTTAGAGCACCTGCACC 59.836 50.000 0.00 0.00 45.16 5.01
2555 3887 1.616159 TTTTTAGAGCACCTGCACCC 58.384 50.000 0.00 0.00 45.16 4.61
2556 3888 0.771127 TTTTAGAGCACCTGCACCCT 59.229 50.000 0.00 0.00 45.16 4.34
2557 3889 0.036732 TTTAGAGCACCTGCACCCTG 59.963 55.000 0.00 0.00 45.16 4.45
2558 3890 1.841302 TTAGAGCACCTGCACCCTGG 61.841 60.000 0.00 0.00 45.16 4.45
2567 3899 3.813724 GCACCCTGGCCCTGCTAT 61.814 66.667 0.00 0.00 0.00 2.97
2568 3900 2.512896 CACCCTGGCCCTGCTATC 59.487 66.667 0.00 0.00 0.00 2.08
2569 3901 2.774351 ACCCTGGCCCTGCTATCC 60.774 66.667 0.00 0.00 0.00 2.59
2570 3902 2.449322 CCCTGGCCCTGCTATCCT 60.449 66.667 0.00 0.00 0.00 3.24
2571 3903 1.152030 CCCTGGCCCTGCTATCCTA 60.152 63.158 0.00 0.00 0.00 2.94
2572 3904 1.197430 CCCTGGCCCTGCTATCCTAG 61.197 65.000 0.00 0.00 0.00 3.02
2586 3918 5.181690 CTATCCTAGCTCTCCAATATCGC 57.818 47.826 0.00 0.00 0.00 4.58
2587 3919 3.162147 TCCTAGCTCTCCAATATCGCT 57.838 47.619 0.00 0.00 34.88 4.93
2588 3920 3.501349 TCCTAGCTCTCCAATATCGCTT 58.499 45.455 0.00 0.00 32.49 4.68
2589 3921 3.898123 TCCTAGCTCTCCAATATCGCTTT 59.102 43.478 0.00 0.00 32.49 3.51
2590 3922 5.077564 TCCTAGCTCTCCAATATCGCTTTA 58.922 41.667 0.00 0.00 32.49 1.85
2591 3923 5.538813 TCCTAGCTCTCCAATATCGCTTTAA 59.461 40.000 0.00 0.00 32.49 1.52
2592 3924 5.866633 CCTAGCTCTCCAATATCGCTTTAAG 59.133 44.000 0.00 0.00 32.49 1.85
2593 3925 5.537300 AGCTCTCCAATATCGCTTTAAGA 57.463 39.130 0.00 0.00 0.00 2.10
2594 3926 6.107901 AGCTCTCCAATATCGCTTTAAGAT 57.892 37.500 0.00 0.00 0.00 2.40
2595 3927 6.162777 AGCTCTCCAATATCGCTTTAAGATC 58.837 40.000 0.00 0.00 0.00 2.75
2596 3928 5.350091 GCTCTCCAATATCGCTTTAAGATCC 59.650 44.000 0.00 0.00 0.00 3.36
2597 3929 5.470368 TCTCCAATATCGCTTTAAGATCCG 58.530 41.667 0.00 0.00 0.00 4.18
2598 3930 5.010719 TCTCCAATATCGCTTTAAGATCCGT 59.989 40.000 0.00 0.00 0.00 4.69
2599 3931 4.988540 TCCAATATCGCTTTAAGATCCGTG 59.011 41.667 0.00 0.00 0.00 4.94
2600 3932 4.377431 CCAATATCGCTTTAAGATCCGTGC 60.377 45.833 0.00 0.00 0.00 5.34
2601 3933 1.209128 ATCGCTTTAAGATCCGTGCG 58.791 50.000 0.00 0.00 43.95 5.34
2602 3934 2.660944 CGCTTTAAGATCCGTGCGA 58.339 52.632 9.50 0.00 45.15 5.10
2603 3935 0.297820 CGCTTTAAGATCCGTGCGAC 59.702 55.000 9.50 0.00 45.15 5.19
2604 3936 1.355971 GCTTTAAGATCCGTGCGACA 58.644 50.000 0.00 0.00 0.00 4.35
2605 3937 1.060698 GCTTTAAGATCCGTGCGACAC 59.939 52.381 0.00 0.00 0.00 3.67
2606 3938 2.333926 CTTTAAGATCCGTGCGACACA 58.666 47.619 9.95 0.00 33.40 3.72
2607 3939 2.442212 TTAAGATCCGTGCGACACAA 57.558 45.000 9.95 0.00 33.40 3.33
2608 3940 1.705256 TAAGATCCGTGCGACACAAC 58.295 50.000 9.95 0.07 33.40 3.32
2609 3941 0.033504 AAGATCCGTGCGACACAACT 59.966 50.000 9.95 1.90 33.40 3.16
2610 3942 0.885879 AGATCCGTGCGACACAACTA 59.114 50.000 9.95 0.00 33.40 2.24
2611 3943 1.271379 AGATCCGTGCGACACAACTAA 59.729 47.619 9.95 0.00 33.40 2.24
2612 3944 1.389106 GATCCGTGCGACACAACTAAC 59.611 52.381 9.95 0.00 33.40 2.34
2613 3945 0.386476 TCCGTGCGACACAACTAACT 59.614 50.000 9.95 0.00 33.40 2.24
2614 3946 1.202440 TCCGTGCGACACAACTAACTT 60.202 47.619 9.95 0.00 33.40 2.66
2615 3947 1.595794 CCGTGCGACACAACTAACTTT 59.404 47.619 9.95 0.00 33.40 2.66
2616 3948 2.031191 CCGTGCGACACAACTAACTTTT 59.969 45.455 9.95 0.00 33.40 2.27
2617 3949 3.486209 CCGTGCGACACAACTAACTTTTT 60.486 43.478 9.95 0.00 33.40 1.94
2618 3950 4.260294 CCGTGCGACACAACTAACTTTTTA 60.260 41.667 9.95 0.00 33.40 1.52
2619 3951 5.437263 CGTGCGACACAACTAACTTTTTAT 58.563 37.500 9.95 0.00 33.40 1.40
2620 3952 6.346758 CCGTGCGACACAACTAACTTTTTATA 60.347 38.462 9.95 0.00 33.40 0.98
2621 3953 7.231607 CGTGCGACACAACTAACTTTTTATAT 58.768 34.615 9.95 0.00 33.40 0.86
2622 3954 8.374728 CGTGCGACACAACTAACTTTTTATATA 58.625 33.333 9.95 0.00 33.40 0.86
2677 4009 9.883142 TGAAACATATTTTGAAGTTCAAACCTT 57.117 25.926 26.72 17.69 45.03 3.50
2680 4012 8.141835 ACATATTTTGAAGTTCAAACCTTTGC 57.858 30.769 26.72 0.00 45.03 3.68
2681 4013 7.768120 ACATATTTTGAAGTTCAAACCTTTGCA 59.232 29.630 26.72 13.39 45.03 4.08
2682 4014 6.667007 ATTTTGAAGTTCAAACCTTTGCAG 57.333 33.333 26.72 0.00 45.03 4.41
2683 4015 3.163630 TGAAGTTCAAACCTTTGCAGC 57.836 42.857 2.20 0.00 38.05 5.25
2684 4016 2.495270 TGAAGTTCAAACCTTTGCAGCA 59.505 40.909 2.20 0.00 38.05 4.41
2685 4017 3.132646 TGAAGTTCAAACCTTTGCAGCAT 59.867 39.130 2.20 0.00 38.05 3.79
2686 4018 3.102052 AGTTCAAACCTTTGCAGCATG 57.898 42.857 0.00 0.00 38.05 4.06
2687 4019 2.431782 AGTTCAAACCTTTGCAGCATGT 59.568 40.909 0.00 0.00 39.31 3.21
2688 4020 2.796593 GTTCAAACCTTTGCAGCATGTC 59.203 45.455 0.00 0.00 39.31 3.06
2689 4021 2.030371 TCAAACCTTTGCAGCATGTCA 58.970 42.857 0.00 0.00 39.31 3.58
2690 4022 2.429971 TCAAACCTTTGCAGCATGTCAA 59.570 40.909 0.00 0.00 39.31 3.18
2691 4023 3.118847 TCAAACCTTTGCAGCATGTCAAA 60.119 39.130 0.00 2.50 38.88 2.69
2694 4026 2.433868 CTTTGCAGCATGTCAAAGCT 57.566 45.000 17.63 0.00 45.57 3.74
2695 4027 2.750948 CTTTGCAGCATGTCAAAGCTT 58.249 42.857 17.63 0.00 45.57 3.74
2696 4028 2.894763 TTGCAGCATGTCAAAGCTTT 57.105 40.000 5.69 5.69 39.50 3.51
2697 4029 2.427232 TGCAGCATGTCAAAGCTTTC 57.573 45.000 9.23 0.00 39.50 2.62
2698 4030 1.000060 TGCAGCATGTCAAAGCTTTCC 60.000 47.619 9.23 3.52 39.50 3.13
2699 4031 1.000060 GCAGCATGTCAAAGCTTTCCA 60.000 47.619 9.23 9.57 39.50 3.53
2700 4032 2.546373 GCAGCATGTCAAAGCTTTCCAA 60.546 45.455 9.23 0.00 39.50 3.53
2701 4033 3.314553 CAGCATGTCAAAGCTTTCCAAG 58.685 45.455 9.23 7.41 39.50 3.61
2702 4034 3.005050 CAGCATGTCAAAGCTTTCCAAGA 59.995 43.478 9.23 0.25 39.50 3.02
2703 4035 3.638160 AGCATGTCAAAGCTTTCCAAGAA 59.362 39.130 9.23 0.00 38.01 2.52
2704 4036 3.985925 GCATGTCAAAGCTTTCCAAGAAG 59.014 43.478 9.23 0.00 0.00 2.85
2705 4037 4.261741 GCATGTCAAAGCTTTCCAAGAAGA 60.262 41.667 9.23 0.00 0.00 2.87
2706 4038 5.737063 GCATGTCAAAGCTTTCCAAGAAGAA 60.737 40.000 9.23 0.00 0.00 2.52
2707 4039 6.453092 CATGTCAAAGCTTTCCAAGAAGAAT 58.547 36.000 9.23 0.00 0.00 2.40
2708 4040 6.469782 TGTCAAAGCTTTCCAAGAAGAATT 57.530 33.333 9.23 0.00 0.00 2.17
2709 4041 6.877236 TGTCAAAGCTTTCCAAGAAGAATTT 58.123 32.000 9.23 0.00 0.00 1.82
2710 4042 8.006298 TGTCAAAGCTTTCCAAGAAGAATTTA 57.994 30.769 9.23 0.00 0.00 1.40
2711 4043 8.137437 TGTCAAAGCTTTCCAAGAAGAATTTAG 58.863 33.333 9.23 0.00 0.00 1.85
2712 4044 7.596621 GTCAAAGCTTTCCAAGAAGAATTTAGG 59.403 37.037 9.23 0.00 0.00 2.69
2713 4045 7.505585 TCAAAGCTTTCCAAGAAGAATTTAGGA 59.494 33.333 9.23 0.00 0.00 2.94
2714 4046 8.309656 CAAAGCTTTCCAAGAAGAATTTAGGAT 58.690 33.333 9.23 0.00 0.00 3.24
2715 4047 9.533831 AAAGCTTTCCAAGAAGAATTTAGGATA 57.466 29.630 5.69 0.00 0.00 2.59
2716 4048 9.533831 AAGCTTTCCAAGAAGAATTTAGGATAA 57.466 29.630 0.00 0.00 0.00 1.75
2717 4049 9.533831 AGCTTTCCAAGAAGAATTTAGGATAAA 57.466 29.630 0.00 0.00 0.00 1.40
2836 4168 8.307582 TCTGAAAGATTTACCCTAGGTTCTAG 57.692 38.462 8.29 3.57 38.67 2.43
2837 4169 7.899709 TCTGAAAGATTTACCCTAGGTTCTAGT 59.100 37.037 8.29 0.03 38.67 2.57
2838 4170 8.445361 TGAAAGATTTACCCTAGGTTCTAGTT 57.555 34.615 8.29 0.00 37.09 2.24
2839 4171 9.551339 TGAAAGATTTACCCTAGGTTCTAGTTA 57.449 33.333 8.29 0.00 37.09 2.24
2841 4173 9.779951 AAAGATTTACCCTAGGTTCTAGTTAGA 57.220 33.333 8.29 0.00 37.09 2.10
2842 4174 9.779951 AAGATTTACCCTAGGTTCTAGTTAGAA 57.220 33.333 8.29 0.00 39.82 2.10
2843 4175 9.779951 AGATTTACCCTAGGTTCTAGTTAGAAA 57.220 33.333 8.29 0.00 43.30 2.52
2845 4177 5.936187 ACCCTAGGTTCTAGTTAGAAAGC 57.064 43.478 8.29 0.00 43.30 3.51
2846 4178 5.591806 ACCCTAGGTTCTAGTTAGAAAGCT 58.408 41.667 8.29 5.96 43.30 3.74
2847 4179 6.024247 ACCCTAGGTTCTAGTTAGAAAGCTT 58.976 40.000 8.29 0.00 43.30 3.74
2848 4180 6.501102 ACCCTAGGTTCTAGTTAGAAAGCTTT 59.499 38.462 12.53 12.53 43.30 3.51
2849 4181 6.819146 CCCTAGGTTCTAGTTAGAAAGCTTTG 59.181 42.308 18.30 0.00 43.30 2.77
2850 4182 6.314152 CCTAGGTTCTAGTTAGAAAGCTTTGC 59.686 42.308 18.30 8.41 43.30 3.68
2851 4183 5.004448 AGGTTCTAGTTAGAAAGCTTTGCC 58.996 41.667 18.30 2.73 43.30 4.52
2852 4184 4.760204 GGTTCTAGTTAGAAAGCTTTGCCA 59.240 41.667 18.30 0.00 43.30 4.92
2853 4185 5.334957 GGTTCTAGTTAGAAAGCTTTGCCAC 60.335 44.000 18.30 9.58 43.30 5.01
2854 4186 3.994392 TCTAGTTAGAAAGCTTTGCCACG 59.006 43.478 18.30 0.00 0.00 4.94
2855 4187 1.266989 AGTTAGAAAGCTTTGCCACGC 59.733 47.619 18.30 0.25 0.00 5.34
2856 4188 1.266989 GTTAGAAAGCTTTGCCACGCT 59.733 47.619 18.30 8.71 38.30 5.07
2857 4189 0.874390 TAGAAAGCTTTGCCACGCTG 59.126 50.000 18.30 0.00 36.45 5.18
2858 4190 2.018324 GAAAGCTTTGCCACGCTGC 61.018 57.895 18.30 0.00 36.45 5.25
2859 4191 2.682256 GAAAGCTTTGCCACGCTGCA 62.682 55.000 18.30 0.00 40.07 4.41
2860 4192 2.091102 AAAGCTTTGCCACGCTGCAT 62.091 50.000 11.80 0.00 41.70 3.96
2861 4193 1.243342 AAGCTTTGCCACGCTGCATA 61.243 50.000 0.00 0.00 41.70 3.14
2862 4194 1.226491 GCTTTGCCACGCTGCATAG 60.226 57.895 11.23 11.23 41.70 2.23
2863 4195 1.430632 CTTTGCCACGCTGCATAGG 59.569 57.895 0.00 0.00 41.70 2.57
2864 4196 1.303236 TTTGCCACGCTGCATAGGT 60.303 52.632 0.00 0.00 41.70 3.08
2865 4197 0.893270 TTTGCCACGCTGCATAGGTT 60.893 50.000 0.00 0.00 41.70 3.50
2866 4198 0.893270 TTGCCACGCTGCATAGGTTT 60.893 50.000 0.00 0.00 41.70 3.27
2867 4199 1.137404 GCCACGCTGCATAGGTTTG 59.863 57.895 0.00 0.00 0.00 2.93
2868 4200 1.305219 GCCACGCTGCATAGGTTTGA 61.305 55.000 0.00 0.00 0.00 2.69
2869 4201 1.164411 CCACGCTGCATAGGTTTGAA 58.836 50.000 0.00 0.00 0.00 2.69
2870 4202 1.135689 CCACGCTGCATAGGTTTGAAC 60.136 52.381 0.00 0.00 0.00 3.18
2871 4203 1.806542 CACGCTGCATAGGTTTGAACT 59.193 47.619 0.00 0.00 0.00 3.01
2872 4204 2.226437 CACGCTGCATAGGTTTGAACTT 59.774 45.455 0.00 0.00 0.00 2.66
2873 4205 2.484264 ACGCTGCATAGGTTTGAACTTC 59.516 45.455 0.00 0.00 0.00 3.01
2874 4206 2.483877 CGCTGCATAGGTTTGAACTTCA 59.516 45.455 0.00 0.00 0.00 3.02
2875 4207 3.058293 CGCTGCATAGGTTTGAACTTCAA 60.058 43.478 0.00 0.00 34.03 2.69
2876 4208 4.479619 GCTGCATAGGTTTGAACTTCAAG 58.520 43.478 4.43 0.00 37.70 3.02
2877 4209 4.216257 GCTGCATAGGTTTGAACTTCAAGA 59.784 41.667 4.43 0.00 37.70 3.02
2878 4210 5.105997 GCTGCATAGGTTTGAACTTCAAGAT 60.106 40.000 4.43 0.00 37.70 2.40
2879 4211 6.094048 GCTGCATAGGTTTGAACTTCAAGATA 59.906 38.462 4.43 0.97 37.70 1.98
2880 4212 7.201767 GCTGCATAGGTTTGAACTTCAAGATAT 60.202 37.037 4.43 2.95 37.70 1.63
2881 4213 7.988737 TGCATAGGTTTGAACTTCAAGATATG 58.011 34.615 17.90 17.90 37.70 1.78
2882 4214 7.611467 TGCATAGGTTTGAACTTCAAGATATGT 59.389 33.333 20.34 5.86 37.70 2.29
2883 4215 8.462016 GCATAGGTTTGAACTTCAAGATATGTT 58.538 33.333 20.34 0.15 37.70 2.71
2884 4216 9.994432 CATAGGTTTGAACTTCAAGATATGTTC 57.006 33.333 15.96 0.00 37.70 3.18
2885 4217 9.965902 ATAGGTTTGAACTTCAAGATATGTTCT 57.034 29.630 4.43 0.00 37.70 3.01
2886 4218 8.103948 AGGTTTGAACTTCAAGATATGTTCTG 57.896 34.615 4.43 0.00 37.70 3.02
2887 4219 7.721399 AGGTTTGAACTTCAAGATATGTTCTGT 59.279 33.333 4.43 0.00 37.70 3.41
2888 4220 7.805071 GGTTTGAACTTCAAGATATGTTCTGTG 59.195 37.037 4.43 0.00 37.70 3.66
2889 4221 8.345565 GTTTGAACTTCAAGATATGTTCTGTGT 58.654 33.333 4.43 0.00 37.70 3.72
2890 4222 7.425577 TGAACTTCAAGATATGTTCTGTGTG 57.574 36.000 0.00 0.00 39.38 3.82
2891 4223 6.427853 TGAACTTCAAGATATGTTCTGTGTGG 59.572 38.462 0.00 0.00 39.38 4.17
2892 4224 5.248640 ACTTCAAGATATGTTCTGTGTGGG 58.751 41.667 0.00 0.00 33.93 4.61
2893 4225 5.013079 ACTTCAAGATATGTTCTGTGTGGGA 59.987 40.000 0.00 0.00 33.93 4.37
2894 4226 5.089970 TCAAGATATGTTCTGTGTGGGAG 57.910 43.478 0.00 0.00 33.93 4.30
2895 4227 4.777366 TCAAGATATGTTCTGTGTGGGAGA 59.223 41.667 0.00 0.00 33.93 3.71
2896 4228 5.248248 TCAAGATATGTTCTGTGTGGGAGAA 59.752 40.000 0.00 0.00 33.93 2.87
2897 4229 5.762179 AGATATGTTCTGTGTGGGAGAAA 57.238 39.130 0.00 0.00 31.27 2.52
2898 4230 5.491982 AGATATGTTCTGTGTGGGAGAAAC 58.508 41.667 0.00 0.00 31.27 2.78
2899 4231 3.576078 ATGTTCTGTGTGGGAGAAACA 57.424 42.857 0.00 0.00 31.27 2.83
2900 4232 3.358111 TGTTCTGTGTGGGAGAAACAA 57.642 42.857 0.00 0.00 31.27 2.83
2901 4233 3.691575 TGTTCTGTGTGGGAGAAACAAA 58.308 40.909 0.00 0.00 31.27 2.83
2902 4234 4.082845 TGTTCTGTGTGGGAGAAACAAAA 58.917 39.130 0.00 0.00 31.27 2.44
2903 4235 4.524714 TGTTCTGTGTGGGAGAAACAAAAA 59.475 37.500 0.00 0.00 31.27 1.94
2929 4261 3.651446 CAATGAATTTGCACAAATCGCG 58.349 40.909 8.94 0.00 39.88 5.87
2930 4262 2.695613 TGAATTTGCACAAATCGCGA 57.304 40.000 13.09 13.09 39.88 5.87
2931 4263 3.214697 TGAATTTGCACAAATCGCGAT 57.785 38.095 17.62 17.62 39.88 4.58
2932 4264 2.916089 TGAATTTGCACAAATCGCGATG 59.084 40.909 24.47 15.69 39.88 3.84
2933 4265 1.270971 ATTTGCACAAATCGCGATGC 58.729 45.000 24.47 23.10 36.34 3.91
2934 4266 0.039708 TTTGCACAAATCGCGATGCA 60.040 45.000 26.30 26.30 45.94 3.96
2935 4267 1.578423 TGCACAAATCGCGATGCAA 59.422 47.368 27.46 14.26 44.72 4.08
2936 4268 0.454789 TGCACAAATCGCGATGCAAG 60.455 50.000 27.46 17.60 44.72 4.01
2937 4269 0.179192 GCACAAATCGCGATGCAAGA 60.179 50.000 24.47 0.00 38.00 3.02
2938 4270 1.728825 GCACAAATCGCGATGCAAGAA 60.729 47.619 24.47 0.00 38.00 2.52
2939 4271 2.583739 CACAAATCGCGATGCAAGAAA 58.416 42.857 24.47 0.00 0.00 2.52
2940 4272 3.173599 CACAAATCGCGATGCAAGAAAT 58.826 40.909 24.47 0.17 0.00 2.17
2941 4273 3.001464 CACAAATCGCGATGCAAGAAATG 60.001 43.478 24.47 13.20 0.00 2.32
2942 4274 2.480224 AATCGCGATGCAAGAAATGG 57.520 45.000 24.47 0.00 0.00 3.16
2943 4275 1.667236 ATCGCGATGCAAGAAATGGA 58.333 45.000 23.04 0.00 0.00 3.41
2944 4276 1.667236 TCGCGATGCAAGAAATGGAT 58.333 45.000 3.71 0.00 43.60 3.41
2945 4277 1.331447 TCGCGATGCAAGAAATGGATG 59.669 47.619 3.71 0.00 40.61 3.51
2946 4278 1.598676 CGCGATGCAAGAAATGGATGG 60.599 52.381 0.00 0.00 40.61 3.51
2947 4279 2.129823 CGATGCAAGAAATGGATGGC 57.870 50.000 0.00 0.00 40.61 4.40
2948 4280 1.679680 CGATGCAAGAAATGGATGGCT 59.320 47.619 0.00 0.00 40.61 4.75
3318 4650 4.878987 GGGGGTTAGGGGTTTTGG 57.121 61.111 0.00 0.00 0.00 3.28
3319 4651 2.175760 GGGGGTTAGGGGTTTTGGA 58.824 57.895 0.00 0.00 0.00 3.53
3320 4652 0.040646 GGGGGTTAGGGGTTTTGGAG 59.959 60.000 0.00 0.00 0.00 3.86
3321 4653 0.040646 GGGGTTAGGGGTTTTGGAGG 59.959 60.000 0.00 0.00 0.00 4.30
3322 4654 0.040646 GGGTTAGGGGTTTTGGAGGG 59.959 60.000 0.00 0.00 0.00 4.30
3323 4655 0.781920 GGTTAGGGGTTTTGGAGGGT 59.218 55.000 0.00 0.00 0.00 4.34
3324 4656 1.148446 GGTTAGGGGTTTTGGAGGGTT 59.852 52.381 0.00 0.00 0.00 4.11
3325 4657 2.379567 GGTTAGGGGTTTTGGAGGGTTA 59.620 50.000 0.00 0.00 0.00 2.85
3326 4658 3.181419 GGTTAGGGGTTTTGGAGGGTTAA 60.181 47.826 0.00 0.00 0.00 2.01
3327 4659 4.511476 GGTTAGGGGTTTTGGAGGGTTAAT 60.511 45.833 0.00 0.00 0.00 1.40
3328 4660 3.935240 AGGGGTTTTGGAGGGTTAATT 57.065 42.857 0.00 0.00 0.00 1.40
3329 4661 4.222333 AGGGGTTTTGGAGGGTTAATTT 57.778 40.909 0.00 0.00 0.00 1.82
3330 4662 5.357157 AGGGGTTTTGGAGGGTTAATTTA 57.643 39.130 0.00 0.00 0.00 1.40
3331 4663 5.728702 AGGGGTTTTGGAGGGTTAATTTAA 58.271 37.500 0.00 0.00 0.00 1.52
3332 4664 5.783360 AGGGGTTTTGGAGGGTTAATTTAAG 59.217 40.000 0.00 0.00 0.00 1.85
3333 4665 5.046159 GGGGTTTTGGAGGGTTAATTTAAGG 60.046 44.000 0.00 0.00 0.00 2.69
3334 4666 5.046159 GGGTTTTGGAGGGTTAATTTAAGGG 60.046 44.000 0.00 0.00 0.00 3.95
3335 4667 5.544948 GGTTTTGGAGGGTTAATTTAAGGGT 59.455 40.000 0.00 0.00 0.00 4.34
3336 4668 6.043474 GGTTTTGGAGGGTTAATTTAAGGGTT 59.957 38.462 0.00 0.00 0.00 4.11
3337 4669 7.420446 GGTTTTGGAGGGTTAATTTAAGGGTTT 60.420 37.037 0.00 0.00 0.00 3.27
3338 4670 6.921486 TTGGAGGGTTAATTTAAGGGTTTC 57.079 37.500 0.00 0.00 0.00 2.78
3339 4671 5.966684 TGGAGGGTTAATTTAAGGGTTTCA 58.033 37.500 0.00 0.00 0.00 2.69
3340 4672 6.566914 TGGAGGGTTAATTTAAGGGTTTCAT 58.433 36.000 0.00 0.00 0.00 2.57
3341 4673 7.710579 TGGAGGGTTAATTTAAGGGTTTCATA 58.289 34.615 0.00 0.00 0.00 2.15
3342 4674 8.348354 TGGAGGGTTAATTTAAGGGTTTCATAT 58.652 33.333 0.00 0.00 0.00 1.78
3343 4675 9.209048 GGAGGGTTAATTTAAGGGTTTCATATT 57.791 33.333 0.00 0.00 0.00 1.28
3345 4677 9.555411 AGGGTTAATTTAAGGGTTTCATATTGT 57.445 29.630 0.00 0.00 0.00 2.71
3346 4678 9.594478 GGGTTAATTTAAGGGTTTCATATTGTG 57.406 33.333 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.557832 GACCAGTGGGCTTGGTATGTA 59.442 52.381 15.21 0.00 37.90 2.29
35 36 0.476338 TAACATGTGGTGCCCAGTGT 59.524 50.000 0.00 1.26 35.82 3.55
39 40 1.323412 GTGTTAACATGTGGTGCCCA 58.677 50.000 12.26 0.00 0.00 5.36
80 81 1.862827 GGTGTAAGCGTGAGACGTTTT 59.137 47.619 3.57 0.00 42.17 2.43
84 85 1.334992 CGTGGTGTAAGCGTGAGACG 61.335 60.000 0.00 0.00 45.88 4.18
86 87 1.372499 GCGTGGTGTAAGCGTGAGA 60.372 57.895 0.00 0.00 36.92 3.27
184 185 3.493303 GAGAGGGGGTGGGATGGC 61.493 72.222 0.00 0.00 0.00 4.40
186 187 0.762461 GAGAGAGAGGGGGTGGGATG 60.762 65.000 0.00 0.00 0.00 3.51
187 188 1.629297 GAGAGAGAGGGGGTGGGAT 59.371 63.158 0.00 0.00 0.00 3.85
188 189 2.637640 GGAGAGAGAGGGGGTGGGA 61.638 68.421 0.00 0.00 0.00 4.37
213 217 1.229951 ATGGAGGAAGGTGGCAGGA 60.230 57.895 0.00 0.00 0.00 3.86
304 308 4.748144 GTCAGGGCAGGGCAAGGG 62.748 72.222 0.00 0.00 0.00 3.95
306 310 3.965539 CTCGTCAGGGCAGGGCAAG 62.966 68.421 0.00 0.00 0.00 4.01
322 326 0.912006 AGAGGAGGGGGACAAAGCTC 60.912 60.000 0.00 0.00 0.00 4.09
381 385 0.041238 TGACAGAGGGGTAGGGAGTG 59.959 60.000 0.00 0.00 0.00 3.51
386 390 1.033574 GACGATGACAGAGGGGTAGG 58.966 60.000 0.00 0.00 0.00 3.18
406 410 0.392595 GGACCTACCCCTTCGCTTTG 60.393 60.000 0.00 0.00 0.00 2.77
407 411 0.838987 TGGACCTACCCCTTCGCTTT 60.839 55.000 0.00 0.00 38.00 3.51
423 427 1.559065 CCCTACCCCTTCGCTTTGGA 61.559 60.000 0.00 0.00 0.00 3.53
424 428 1.077716 CCCTACCCCTTCGCTTTGG 60.078 63.158 0.00 0.00 0.00 3.28
425 429 0.107654 CTCCCTACCCCTTCGCTTTG 60.108 60.000 0.00 0.00 0.00 2.77
426 430 0.546988 ACTCCCTACCCCTTCGCTTT 60.547 55.000 0.00 0.00 0.00 3.51
427 431 1.080538 ACTCCCTACCCCTTCGCTT 59.919 57.895 0.00 0.00 0.00 4.68
428 432 1.686110 CACTCCCTACCCCTTCGCT 60.686 63.158 0.00 0.00 0.00 4.93
429 433 2.732619 CCACTCCCTACCCCTTCGC 61.733 68.421 0.00 0.00 0.00 4.70
430 434 1.305887 ACCACTCCCTACCCCTTCG 60.306 63.158 0.00 0.00 0.00 3.79
431 435 0.042881 AGACCACTCCCTACCCCTTC 59.957 60.000 0.00 0.00 0.00 3.46
432 436 0.042881 GAGACCACTCCCTACCCCTT 59.957 60.000 0.00 0.00 37.19 3.95
433 437 1.153695 TGAGACCACTCCCTACCCCT 61.154 60.000 0.00 0.00 41.99 4.79
434 438 0.031010 ATGAGACCACTCCCTACCCC 60.031 60.000 0.00 0.00 41.99 4.95
435 439 2.599677 CTATGAGACCACTCCCTACCC 58.400 57.143 0.00 0.00 41.99 3.69
436 440 1.964933 GCTATGAGACCACTCCCTACC 59.035 57.143 0.00 0.00 41.99 3.18
437 441 2.888414 GAGCTATGAGACCACTCCCTAC 59.112 54.545 0.00 0.00 41.99 3.18
438 442 2.514160 TGAGCTATGAGACCACTCCCTA 59.486 50.000 0.00 0.00 41.99 3.53
439 443 1.289231 TGAGCTATGAGACCACTCCCT 59.711 52.381 0.00 0.00 41.99 4.20
440 444 1.686052 CTGAGCTATGAGACCACTCCC 59.314 57.143 0.00 0.00 41.99 4.30
441 445 2.660572 TCTGAGCTATGAGACCACTCC 58.339 52.381 0.00 0.00 41.99 3.85
469 473 1.318576 CCCACCCTAATTCATTCGCC 58.681 55.000 0.00 0.00 0.00 5.54
471 475 3.352648 ACAACCCACCCTAATTCATTCG 58.647 45.455 0.00 0.00 0.00 3.34
486 490 3.244770 TGGTCAGACCTAATGAACAACCC 60.245 47.826 20.82 0.00 41.30 4.11
525 529 2.912025 CACAACCCACACCCCTGC 60.912 66.667 0.00 0.00 0.00 4.85
713 717 2.109126 GGAAGGGACATGCACGCTC 61.109 63.158 9.70 5.17 0.00 5.03
795 1990 1.383523 AAAAGATGAGGCTTAGCGGC 58.616 50.000 0.00 0.00 38.75 6.53
861 2059 1.184970 AAAAAGATGGGCCGGTGTGG 61.185 55.000 1.90 0.00 42.50 4.17
898 2097 1.308069 ATGTGTTGGAGTGGCGATGC 61.308 55.000 0.00 0.00 0.00 3.91
924 2144 0.397187 TAGGTTTTGCGTGTGGGCTA 59.603 50.000 0.00 0.00 0.00 3.93
934 2154 6.978659 GCAGAATACCCTATTTTAGGTTTTGC 59.021 38.462 0.19 2.25 44.73 3.68
976 2196 0.735978 TGTGATGCGTAACTGAGCCG 60.736 55.000 0.00 0.00 0.00 5.52
978 2198 1.391485 CTGTGTGATGCGTAACTGAGC 59.609 52.381 0.00 0.00 0.00 4.26
979 2199 1.391485 GCTGTGTGATGCGTAACTGAG 59.609 52.381 0.00 0.00 0.00 3.35
980 2200 1.428448 GCTGTGTGATGCGTAACTGA 58.572 50.000 0.00 0.00 0.00 3.41
983 2203 1.419922 CGGCTGTGTGATGCGTAAC 59.580 57.895 0.00 0.00 0.00 2.50
1153 2388 3.282745 GAGGAAGCAGCGGTCGACA 62.283 63.158 18.91 0.00 0.00 4.35
1155 2390 3.760035 GGAGGAAGCAGCGGTCGA 61.760 66.667 0.00 0.00 0.00 4.20
1241 2482 2.363795 TGAGGGGTGAGGCGGTAG 60.364 66.667 0.00 0.00 0.00 3.18
1861 3153 2.616842 GCCCATATAACTGTGGAAACCG 59.383 50.000 0.00 0.00 35.75 4.44
1982 3305 0.443869 CTTCCACCATTGCTTCGTCG 59.556 55.000 0.00 0.00 0.00 5.12
2053 3382 3.437052 GCCTCCCTATTGAACCCATGAAT 60.437 47.826 0.00 0.00 0.00 2.57
2165 3494 1.098050 GCAGGAATGAGCCGTGAAAT 58.902 50.000 0.00 0.00 0.00 2.17
2260 3591 2.785357 AAGGAGGTAGCTAGCATCCT 57.215 50.000 25.60 25.60 42.21 3.24
2349 3681 2.418628 CACCCACTAAACCATGTAAGCG 59.581 50.000 0.00 0.00 0.00 4.68
2409 3741 5.852738 AACTCACAGAAATCAGATCAACG 57.147 39.130 0.00 0.00 0.00 4.10
2433 3765 5.799827 AAAATCTCTAGATCCCTCGAAGG 57.200 43.478 0.00 0.00 32.75 3.46
2457 3789 3.243670 TGCGTTCATGCTTGGATGAAAAA 60.244 39.130 16.83 5.54 42.58 1.94
2458 3790 2.295629 TGCGTTCATGCTTGGATGAAAA 59.704 40.909 16.83 5.83 42.58 2.29
2459 3791 1.885233 TGCGTTCATGCTTGGATGAAA 59.115 42.857 16.83 2.22 42.58 2.69
2460 3792 1.199789 GTGCGTTCATGCTTGGATGAA 59.800 47.619 12.38 12.38 39.52 2.57
2461 3793 0.804364 GTGCGTTCATGCTTGGATGA 59.196 50.000 4.28 0.68 35.36 2.92
2462 3794 0.806868 AGTGCGTTCATGCTTGGATG 59.193 50.000 0.00 0.00 35.36 3.51
2463 3795 0.806868 CAGTGCGTTCATGCTTGGAT 59.193 50.000 0.00 0.00 35.36 3.41
2464 3796 0.534877 ACAGTGCGTTCATGCTTGGA 60.535 50.000 0.00 0.00 35.36 3.53
2465 3797 0.311790 AACAGTGCGTTCATGCTTGG 59.688 50.000 0.00 0.00 29.27 3.61
2466 3798 2.046313 GAAACAGTGCGTTCATGCTTG 58.954 47.619 0.00 0.00 36.59 4.01
2467 3799 1.001378 GGAAACAGTGCGTTCATGCTT 60.001 47.619 8.86 0.00 36.59 3.91
2468 3800 0.593128 GGAAACAGTGCGTTCATGCT 59.407 50.000 8.86 0.00 36.59 3.79
2469 3801 0.310543 TGGAAACAGTGCGTTCATGC 59.689 50.000 8.86 0.00 36.59 4.06
2481 3813 8.202811 TTGATCAACAAGAATCAAATGGAAACA 58.797 29.630 3.38 0.00 38.22 2.83
2482 3814 8.592105 TTGATCAACAAGAATCAAATGGAAAC 57.408 30.769 3.38 0.00 34.20 2.78
2483 3815 9.781633 ATTTGATCAACAAGAATCAAATGGAAA 57.218 25.926 17.78 0.00 46.05 3.13
2484 3816 9.781633 AATTTGATCAACAAGAATCAAATGGAA 57.218 25.926 18.72 0.00 46.68 3.53
2485 3817 9.781633 AAATTTGATCAACAAGAATCAAATGGA 57.218 25.926 18.72 0.00 46.68 3.41
2510 3842 2.156098 GTCCGCACACAGGGATAAAAA 58.844 47.619 0.00 0.00 34.25 1.94
2511 3843 1.816074 GTCCGCACACAGGGATAAAA 58.184 50.000 0.00 0.00 34.25 1.52
2512 3844 0.390603 CGTCCGCACACAGGGATAAA 60.391 55.000 0.00 0.00 34.25 1.40
2513 3845 1.216977 CGTCCGCACACAGGGATAA 59.783 57.895 0.00 0.00 34.25 1.75
2514 3846 1.980232 ACGTCCGCACACAGGGATA 60.980 57.895 0.00 0.00 34.25 2.59
2515 3847 3.311110 ACGTCCGCACACAGGGAT 61.311 61.111 0.00 0.00 34.25 3.85
2516 3848 4.293648 CACGTCCGCACACAGGGA 62.294 66.667 0.00 0.00 0.00 4.20
2518 3850 3.589654 ATCCACGTCCGCACACAGG 62.590 63.158 0.00 0.00 0.00 4.00
2519 3851 1.227999 AAATCCACGTCCGCACACAG 61.228 55.000 0.00 0.00 0.00 3.66
2520 3852 0.816018 AAAATCCACGTCCGCACACA 60.816 50.000 0.00 0.00 0.00 3.72
2521 3853 0.309612 AAAAATCCACGTCCGCACAC 59.690 50.000 0.00 0.00 0.00 3.82
2522 3854 1.801771 CTAAAAATCCACGTCCGCACA 59.198 47.619 0.00 0.00 0.00 4.57
2523 3855 2.070783 TCTAAAAATCCACGTCCGCAC 58.929 47.619 0.00 0.00 0.00 5.34
2524 3856 2.343101 CTCTAAAAATCCACGTCCGCA 58.657 47.619 0.00 0.00 0.00 5.69
2525 3857 1.062148 GCTCTAAAAATCCACGTCCGC 59.938 52.381 0.00 0.00 0.00 5.54
2526 3858 2.093783 GTGCTCTAAAAATCCACGTCCG 59.906 50.000 0.00 0.00 0.00 4.79
2527 3859 2.418976 GGTGCTCTAAAAATCCACGTCC 59.581 50.000 0.00 0.00 0.00 4.79
2528 3860 3.125316 CAGGTGCTCTAAAAATCCACGTC 59.875 47.826 0.00 0.00 0.00 4.34
2529 3861 3.074412 CAGGTGCTCTAAAAATCCACGT 58.926 45.455 0.00 0.00 0.00 4.49
2530 3862 2.159517 GCAGGTGCTCTAAAAATCCACG 60.160 50.000 0.00 0.00 38.21 4.94
2531 3863 2.819608 TGCAGGTGCTCTAAAAATCCAC 59.180 45.455 3.18 0.00 42.66 4.02
2532 3864 2.819608 GTGCAGGTGCTCTAAAAATCCA 59.180 45.455 3.18 0.00 42.66 3.41
2533 3865 2.164422 GGTGCAGGTGCTCTAAAAATCC 59.836 50.000 3.18 0.00 42.66 3.01
2534 3866 2.164422 GGGTGCAGGTGCTCTAAAAATC 59.836 50.000 3.18 0.00 42.66 2.17
2535 3867 2.171003 GGGTGCAGGTGCTCTAAAAAT 58.829 47.619 3.18 0.00 42.66 1.82
2536 3868 1.144913 AGGGTGCAGGTGCTCTAAAAA 59.855 47.619 3.18 0.00 42.66 1.94
2537 3869 0.771127 AGGGTGCAGGTGCTCTAAAA 59.229 50.000 3.18 0.00 42.66 1.52
2538 3870 0.036732 CAGGGTGCAGGTGCTCTAAA 59.963 55.000 3.18 0.00 42.66 1.85
2539 3871 1.679311 CAGGGTGCAGGTGCTCTAA 59.321 57.895 3.18 0.00 42.66 2.10
2540 3872 2.293318 CCAGGGTGCAGGTGCTCTA 61.293 63.158 3.18 0.00 42.66 2.43
2541 3873 3.644606 CCAGGGTGCAGGTGCTCT 61.645 66.667 3.18 0.00 42.66 4.09
2550 3882 3.781605 GATAGCAGGGCCAGGGTGC 62.782 68.421 6.18 6.88 37.48 5.01
2551 3883 2.512896 GATAGCAGGGCCAGGGTG 59.487 66.667 6.18 0.00 0.00 4.61
2552 3884 1.973346 TAGGATAGCAGGGCCAGGGT 61.973 60.000 6.18 5.63 0.00 4.34
2553 3885 1.152030 TAGGATAGCAGGGCCAGGG 60.152 63.158 6.18 0.00 0.00 4.45
2554 3886 2.370718 CTAGGATAGCAGGGCCAGG 58.629 63.158 6.18 0.00 0.00 4.45
2564 3896 4.887071 AGCGATATTGGAGAGCTAGGATAG 59.113 45.833 0.00 0.00 43.09 2.08
2565 3897 4.861196 AGCGATATTGGAGAGCTAGGATA 58.139 43.478 0.00 0.00 36.28 2.59
2566 3898 3.707316 AGCGATATTGGAGAGCTAGGAT 58.293 45.455 0.00 0.00 36.28 3.24
2567 3899 3.162147 AGCGATATTGGAGAGCTAGGA 57.838 47.619 0.00 0.00 36.28 2.94
2568 3900 3.951775 AAGCGATATTGGAGAGCTAGG 57.048 47.619 0.00 0.00 37.15 3.02
2569 3901 6.682746 TCTTAAAGCGATATTGGAGAGCTAG 58.317 40.000 0.00 0.00 37.15 3.42
2570 3902 6.650427 TCTTAAAGCGATATTGGAGAGCTA 57.350 37.500 0.00 0.00 37.15 3.32
2571 3903 5.537300 TCTTAAAGCGATATTGGAGAGCT 57.463 39.130 0.00 0.00 40.20 4.09
2572 3904 5.350091 GGATCTTAAAGCGATATTGGAGAGC 59.650 44.000 0.00 0.00 0.00 4.09
2573 3905 5.574830 CGGATCTTAAAGCGATATTGGAGAG 59.425 44.000 0.00 0.00 0.00 3.20
2574 3906 5.010719 ACGGATCTTAAAGCGATATTGGAGA 59.989 40.000 0.00 0.00 0.00 3.71
2575 3907 5.119279 CACGGATCTTAAAGCGATATTGGAG 59.881 44.000 0.00 0.00 0.00 3.86
2576 3908 4.988540 CACGGATCTTAAAGCGATATTGGA 59.011 41.667 0.00 0.00 0.00 3.53
2577 3909 4.377431 GCACGGATCTTAAAGCGATATTGG 60.377 45.833 0.00 0.00 0.00 3.16
2578 3910 4.702392 GCACGGATCTTAAAGCGATATTG 58.298 43.478 0.00 0.00 0.00 1.90
2579 3911 4.992381 GCACGGATCTTAAAGCGATATT 57.008 40.909 0.00 0.00 0.00 1.28
2584 3916 0.297820 GTCGCACGGATCTTAAAGCG 59.702 55.000 0.00 0.00 45.79 4.68
2585 3917 1.060698 GTGTCGCACGGATCTTAAAGC 59.939 52.381 0.00 0.00 0.00 3.51
2586 3918 2.333926 TGTGTCGCACGGATCTTAAAG 58.666 47.619 5.69 0.00 37.14 1.85
2587 3919 2.442212 TGTGTCGCACGGATCTTAAA 57.558 45.000 5.69 0.00 37.14 1.52
2588 3920 2.063266 GTTGTGTCGCACGGATCTTAA 58.937 47.619 5.69 0.00 37.14 1.85
2589 3921 1.271379 AGTTGTGTCGCACGGATCTTA 59.729 47.619 5.69 0.00 37.14 2.10
2590 3922 0.033504 AGTTGTGTCGCACGGATCTT 59.966 50.000 5.69 0.00 37.14 2.40
2591 3923 0.885879 TAGTTGTGTCGCACGGATCT 59.114 50.000 5.69 4.40 37.14 2.75
2592 3924 1.389106 GTTAGTTGTGTCGCACGGATC 59.611 52.381 5.69 0.00 37.14 3.36
2593 3925 1.000506 AGTTAGTTGTGTCGCACGGAT 59.999 47.619 5.69 0.00 37.14 4.18
2594 3926 0.386476 AGTTAGTTGTGTCGCACGGA 59.614 50.000 5.69 0.00 37.14 4.69
2595 3927 1.214367 AAGTTAGTTGTGTCGCACGG 58.786 50.000 5.69 0.00 37.14 4.94
2596 3928 3.313274 AAAAGTTAGTTGTGTCGCACG 57.687 42.857 5.69 0.00 37.14 5.34
2651 3983 9.883142 AAGGTTTGAACTTCAAAATATGTTTCA 57.117 25.926 16.79 0.00 46.53 2.69
2654 3986 8.611757 GCAAAGGTTTGAACTTCAAAATATGTT 58.388 29.630 16.79 6.38 46.53 2.71
2655 3987 7.768120 TGCAAAGGTTTGAACTTCAAAATATGT 59.232 29.630 16.79 1.26 46.53 2.29
2656 3988 8.140677 TGCAAAGGTTTGAACTTCAAAATATG 57.859 30.769 16.79 13.98 46.53 1.78
2657 3989 7.041848 GCTGCAAAGGTTTGAACTTCAAAATAT 60.042 33.333 16.79 5.25 46.53 1.28
2658 3990 6.257630 GCTGCAAAGGTTTGAACTTCAAAATA 59.742 34.615 16.79 0.00 46.53 1.40
2659 3991 5.065090 GCTGCAAAGGTTTGAACTTCAAAAT 59.935 36.000 16.79 7.70 46.53 1.82
2660 3992 4.391523 GCTGCAAAGGTTTGAACTTCAAAA 59.608 37.500 16.79 1.47 46.53 2.44
2661 3993 3.932089 GCTGCAAAGGTTTGAACTTCAAA 59.068 39.130 12.12 12.12 43.37 2.69
2662 3994 3.056250 TGCTGCAAAGGTTTGAACTTCAA 60.056 39.130 0.00 0.00 40.55 2.69
2663 3995 2.495270 TGCTGCAAAGGTTTGAACTTCA 59.505 40.909 0.00 0.00 40.55 3.02
2664 3996 3.163630 TGCTGCAAAGGTTTGAACTTC 57.836 42.857 0.00 0.00 40.55 3.01
2665 3997 3.118665 ACATGCTGCAAAGGTTTGAACTT 60.119 39.130 6.36 0.00 40.55 2.66
2666 3998 2.431782 ACATGCTGCAAAGGTTTGAACT 59.568 40.909 6.36 0.00 40.55 3.01
2667 3999 2.796593 GACATGCTGCAAAGGTTTGAAC 59.203 45.455 6.36 0.00 40.55 3.18
2668 4000 2.429971 TGACATGCTGCAAAGGTTTGAA 59.570 40.909 6.36 0.00 40.55 2.69
2669 4001 2.030371 TGACATGCTGCAAAGGTTTGA 58.970 42.857 6.36 0.00 40.55 2.69
2670 4002 2.512485 TGACATGCTGCAAAGGTTTG 57.488 45.000 6.36 1.21 41.03 2.93
2671 4003 3.460103 CTTTGACATGCTGCAAAGGTTT 58.540 40.909 20.20 0.00 44.37 3.27
2672 4004 2.804212 GCTTTGACATGCTGCAAAGGTT 60.804 45.455 25.09 0.00 46.76 3.50
2673 4005 1.269936 GCTTTGACATGCTGCAAAGGT 60.270 47.619 25.09 5.48 46.76 3.50
2674 4006 1.000506 AGCTTTGACATGCTGCAAAGG 59.999 47.619 25.09 1.81 46.76 3.11
2676 4008 2.894763 AAGCTTTGACATGCTGCAAA 57.105 40.000 6.36 0.68 39.71 3.68
2677 4009 2.546373 GGAAAGCTTTGACATGCTGCAA 60.546 45.455 18.30 0.00 39.71 4.08
2678 4010 1.000060 GGAAAGCTTTGACATGCTGCA 60.000 47.619 18.30 4.13 39.71 4.41
2679 4011 1.000060 TGGAAAGCTTTGACATGCTGC 60.000 47.619 18.30 0.00 39.71 5.25
2680 4012 3.005050 TCTTGGAAAGCTTTGACATGCTG 59.995 43.478 18.30 6.67 45.70 4.41
2681 4013 3.225104 TCTTGGAAAGCTTTGACATGCT 58.775 40.909 18.30 0.00 45.70 3.79
2682 4014 3.648339 TCTTGGAAAGCTTTGACATGC 57.352 42.857 18.30 0.04 45.70 4.06
2683 4015 5.443185 TCTTCTTGGAAAGCTTTGACATG 57.557 39.130 18.30 16.14 45.70 3.21
2684 4016 6.661304 ATTCTTCTTGGAAAGCTTTGACAT 57.339 33.333 18.30 0.00 45.70 3.06
2685 4017 6.469782 AATTCTTCTTGGAAAGCTTTGACA 57.530 33.333 18.30 12.59 45.70 3.58
2686 4018 7.596621 CCTAAATTCTTCTTGGAAAGCTTTGAC 59.403 37.037 18.30 9.93 45.70 3.18
2687 4019 7.505585 TCCTAAATTCTTCTTGGAAAGCTTTGA 59.494 33.333 18.30 4.50 45.70 2.69
2688 4020 7.661040 TCCTAAATTCTTCTTGGAAAGCTTTG 58.339 34.615 18.30 1.74 45.70 2.77
2689 4021 7.839680 TCCTAAATTCTTCTTGGAAAGCTTT 57.160 32.000 12.53 12.53 45.70 3.51
2690 4022 9.533831 TTATCCTAAATTCTTCTTGGAAAGCTT 57.466 29.630 0.00 0.00 45.70 3.74
2691 4023 9.533831 TTTATCCTAAATTCTTCTTGGAAAGCT 57.466 29.630 0.00 0.00 45.70 3.74
2809 4141 8.164057 AGAACCTAGGGTAAATCTTTCAGATT 57.836 34.615 14.81 0.00 39.94 2.40
2810 4142 7.757242 AGAACCTAGGGTAAATCTTTCAGAT 57.243 36.000 14.81 0.00 32.99 2.90
2811 4143 7.899709 ACTAGAACCTAGGGTAAATCTTTCAGA 59.100 37.037 14.81 0.00 33.12 3.27
2812 4144 8.080363 ACTAGAACCTAGGGTAAATCTTTCAG 57.920 38.462 14.81 7.74 33.12 3.02
2813 4145 8.445361 AACTAGAACCTAGGGTAAATCTTTCA 57.555 34.615 14.81 0.00 33.12 2.69
2815 4147 9.779951 TCTAACTAGAACCTAGGGTAAATCTTT 57.220 33.333 14.81 0.00 33.12 2.52
2816 4148 9.779951 TTCTAACTAGAACCTAGGGTAAATCTT 57.220 33.333 14.81 0.00 37.40 2.40
2817 4149 9.779951 TTTCTAACTAGAACCTAGGGTAAATCT 57.220 33.333 14.81 10.53 41.64 2.40
2819 4151 8.484575 GCTTTCTAACTAGAACCTAGGGTAAAT 58.515 37.037 14.81 0.00 41.64 1.40
2820 4152 7.677319 AGCTTTCTAACTAGAACCTAGGGTAAA 59.323 37.037 14.81 0.11 41.64 2.01
2821 4153 7.187676 AGCTTTCTAACTAGAACCTAGGGTAA 58.812 38.462 14.81 0.00 41.64 2.85
2822 4154 6.739664 AGCTTTCTAACTAGAACCTAGGGTA 58.260 40.000 14.81 0.57 41.64 3.69
2823 4155 5.591806 AGCTTTCTAACTAGAACCTAGGGT 58.408 41.667 14.81 6.29 41.64 4.34
2824 4156 6.547930 AAGCTTTCTAACTAGAACCTAGGG 57.452 41.667 14.81 0.00 41.64 3.53
2825 4157 6.314152 GCAAAGCTTTCTAACTAGAACCTAGG 59.686 42.308 9.23 7.41 41.64 3.02
2826 4158 6.314152 GGCAAAGCTTTCTAACTAGAACCTAG 59.686 42.308 9.23 0.00 41.64 3.02
2827 4159 6.171213 GGCAAAGCTTTCTAACTAGAACCTA 58.829 40.000 9.23 0.00 41.64 3.08
2828 4160 5.004448 GGCAAAGCTTTCTAACTAGAACCT 58.996 41.667 9.23 0.00 41.64 3.50
2829 4161 4.760204 TGGCAAAGCTTTCTAACTAGAACC 59.240 41.667 9.23 0.00 41.64 3.62
2830 4162 5.614887 CGTGGCAAAGCTTTCTAACTAGAAC 60.615 44.000 9.23 0.00 41.64 3.01
2831 4163 4.451096 CGTGGCAAAGCTTTCTAACTAGAA 59.549 41.667 9.23 0.00 40.33 2.10
2832 4164 3.994392 CGTGGCAAAGCTTTCTAACTAGA 59.006 43.478 9.23 0.00 0.00 2.43
2833 4165 3.424962 GCGTGGCAAAGCTTTCTAACTAG 60.425 47.826 9.23 0.00 0.00 2.57
2834 4166 2.482721 GCGTGGCAAAGCTTTCTAACTA 59.517 45.455 9.23 0.00 0.00 2.24
2835 4167 1.266989 GCGTGGCAAAGCTTTCTAACT 59.733 47.619 9.23 0.00 0.00 2.24
2836 4168 1.266989 AGCGTGGCAAAGCTTTCTAAC 59.733 47.619 9.23 6.66 37.97 2.34
2837 4169 1.266718 CAGCGTGGCAAAGCTTTCTAA 59.733 47.619 9.23 0.00 39.27 2.10
2838 4170 0.874390 CAGCGTGGCAAAGCTTTCTA 59.126 50.000 9.23 0.00 39.27 2.10
2839 4171 1.656441 CAGCGTGGCAAAGCTTTCT 59.344 52.632 9.23 0.00 39.27 2.52
2840 4172 2.018324 GCAGCGTGGCAAAGCTTTC 61.018 57.895 9.23 4.47 39.27 2.62
2841 4173 2.028043 GCAGCGTGGCAAAGCTTT 59.972 55.556 14.91 5.69 39.27 3.51
2842 4174 3.218470 TGCAGCGTGGCAAAGCTT 61.218 55.556 14.91 0.00 39.27 3.74
2849 4181 1.137404 CAAACCTATGCAGCGTGGC 59.863 57.895 0.00 0.00 0.00 5.01
2850 4182 1.135689 GTTCAAACCTATGCAGCGTGG 60.136 52.381 0.00 0.00 0.00 4.94
2851 4183 1.806542 AGTTCAAACCTATGCAGCGTG 59.193 47.619 0.00 0.00 0.00 5.34
2852 4184 2.185004 AGTTCAAACCTATGCAGCGT 57.815 45.000 0.00 0.00 0.00 5.07
2853 4185 2.483877 TGAAGTTCAAACCTATGCAGCG 59.516 45.455 2.20 0.00 0.00 5.18
2854 4186 4.216257 TCTTGAAGTTCAAACCTATGCAGC 59.784 41.667 18.55 0.00 35.73 5.25
2855 4187 5.947228 TCTTGAAGTTCAAACCTATGCAG 57.053 39.130 18.55 4.64 35.73 4.41
2856 4188 7.611467 ACATATCTTGAAGTTCAAACCTATGCA 59.389 33.333 24.50 0.00 35.73 3.96
2857 4189 7.989826 ACATATCTTGAAGTTCAAACCTATGC 58.010 34.615 24.50 0.00 35.73 3.14
2858 4190 9.994432 GAACATATCTTGAAGTTCAAACCTATG 57.006 33.333 23.76 23.76 39.95 2.23
2859 4191 9.965902 AGAACATATCTTGAAGTTCAAACCTAT 57.034 29.630 18.55 12.24 42.01 2.57
2860 4192 9.219603 CAGAACATATCTTGAAGTTCAAACCTA 57.780 33.333 18.55 10.72 42.01 3.08
2861 4193 7.721399 ACAGAACATATCTTGAAGTTCAAACCT 59.279 33.333 18.55 9.05 42.01 3.50
2862 4194 7.805071 CACAGAACATATCTTGAAGTTCAAACC 59.195 37.037 18.55 3.35 42.01 3.27
2863 4195 8.345565 ACACAGAACATATCTTGAAGTTCAAAC 58.654 33.333 18.55 4.40 42.01 2.93
2864 4196 8.344831 CACACAGAACATATCTTGAAGTTCAAA 58.655 33.333 18.55 10.48 42.01 2.69
2865 4197 7.041167 CCACACAGAACATATCTTGAAGTTCAA 60.041 37.037 17.16 17.16 42.01 2.69
2866 4198 6.427853 CCACACAGAACATATCTTGAAGTTCA 59.572 38.462 0.08 0.08 42.01 3.18
2867 4199 6.128172 CCCACACAGAACATATCTTGAAGTTC 60.128 42.308 0.00 0.00 40.37 3.01
2868 4200 5.707298 CCCACACAGAACATATCTTGAAGTT 59.293 40.000 0.00 0.00 35.73 2.66
2869 4201 5.013079 TCCCACACAGAACATATCTTGAAGT 59.987 40.000 0.00 0.00 35.73 3.01
2870 4202 5.491070 TCCCACACAGAACATATCTTGAAG 58.509 41.667 0.00 0.00 35.73 3.02
2871 4203 5.248248 TCTCCCACACAGAACATATCTTGAA 59.752 40.000 0.00 0.00 35.73 2.69
2872 4204 4.777366 TCTCCCACACAGAACATATCTTGA 59.223 41.667 0.00 0.00 35.73 3.02
2873 4205 5.089970 TCTCCCACACAGAACATATCTTG 57.910 43.478 0.00 0.00 35.73 3.02
2874 4206 5.762179 TTCTCCCACACAGAACATATCTT 57.238 39.130 0.00 0.00 35.73 2.40
2875 4207 5.013079 TGTTTCTCCCACACAGAACATATCT 59.987 40.000 0.00 0.00 39.68 1.98
2876 4208 5.245531 TGTTTCTCCCACACAGAACATATC 58.754 41.667 0.00 0.00 29.30 1.63
2877 4209 5.241403 TGTTTCTCCCACACAGAACATAT 57.759 39.130 0.00 0.00 29.30 1.78
2878 4210 4.698201 TGTTTCTCCCACACAGAACATA 57.302 40.909 0.00 0.00 29.30 2.29
2879 4211 3.576078 TGTTTCTCCCACACAGAACAT 57.424 42.857 0.00 0.00 29.30 2.71
2880 4212 3.358111 TTGTTTCTCCCACACAGAACA 57.642 42.857 0.00 0.00 29.30 3.18
2881 4213 4.712122 TTTTGTTTCTCCCACACAGAAC 57.288 40.909 0.00 0.00 29.30 3.01
2908 4240 3.364322 TCGCGATTTGTGCAAATTCATTG 59.636 39.130 3.71 2.28 40.77 2.82
2909 4241 3.573598 TCGCGATTTGTGCAAATTCATT 58.426 36.364 3.71 0.00 40.77 2.57
2910 4242 3.214697 TCGCGATTTGTGCAAATTCAT 57.785 38.095 3.71 0.00 40.77 2.57
2911 4243 2.695613 TCGCGATTTGTGCAAATTCA 57.304 40.000 3.71 0.00 40.77 2.57
2912 4244 2.284627 GCATCGCGATTTGTGCAAATTC 60.285 45.455 23.50 6.30 40.77 2.17
2913 4245 1.655099 GCATCGCGATTTGTGCAAATT 59.345 42.857 23.50 0.00 40.77 1.82
2914 4246 1.270971 GCATCGCGATTTGTGCAAAT 58.729 45.000 23.50 9.60 43.14 2.32
2915 4247 0.039708 TGCATCGCGATTTGTGCAAA 60.040 45.000 27.46 9.97 43.83 3.68
2916 4248 1.578423 TGCATCGCGATTTGTGCAA 59.422 47.368 27.46 14.26 43.83 4.08
2917 4249 0.454789 CTTGCATCGCGATTTGTGCA 60.455 50.000 26.30 26.30 44.97 4.57
2918 4250 0.179192 TCTTGCATCGCGATTTGTGC 60.179 50.000 21.14 21.71 38.05 4.57
2919 4251 2.245795 TTCTTGCATCGCGATTTGTG 57.754 45.000 21.14 11.32 0.00 3.33
2920 4252 2.987413 TTTCTTGCATCGCGATTTGT 57.013 40.000 21.14 0.00 0.00 2.83
2921 4253 2.532723 CCATTTCTTGCATCGCGATTTG 59.467 45.455 21.14 12.58 0.00 2.32
2922 4254 2.423185 TCCATTTCTTGCATCGCGATTT 59.577 40.909 21.14 0.00 0.00 2.17
2923 4255 2.016318 TCCATTTCTTGCATCGCGATT 58.984 42.857 21.14 1.50 0.00 3.34
2924 4256 1.667236 TCCATTTCTTGCATCGCGAT 58.333 45.000 17.62 17.62 0.00 4.58
2925 4257 1.331447 CATCCATTTCTTGCATCGCGA 59.669 47.619 13.09 13.09 0.00 5.87
2926 4258 1.598676 CCATCCATTTCTTGCATCGCG 60.599 52.381 0.00 0.00 0.00 5.87
2927 4259 1.866880 GCCATCCATTTCTTGCATCGC 60.867 52.381 0.00 0.00 0.00 4.58
2928 4260 1.679680 AGCCATCCATTTCTTGCATCG 59.320 47.619 0.00 0.00 0.00 3.84
3301 4633 0.040646 CTCCAAAACCCCTAACCCCC 59.959 60.000 0.00 0.00 0.00 5.40
3302 4634 0.040646 CCTCCAAAACCCCTAACCCC 59.959 60.000 0.00 0.00 0.00 4.95
3303 4635 0.040646 CCCTCCAAAACCCCTAACCC 59.959 60.000 0.00 0.00 0.00 4.11
3304 4636 0.781920 ACCCTCCAAAACCCCTAACC 59.218 55.000 0.00 0.00 0.00 2.85
3305 4637 2.688902 AACCCTCCAAAACCCCTAAC 57.311 50.000 0.00 0.00 0.00 2.34
3306 4638 5.357157 AATTAACCCTCCAAAACCCCTAA 57.643 39.130 0.00 0.00 0.00 2.69
3307 4639 5.357157 AAATTAACCCTCCAAAACCCCTA 57.643 39.130 0.00 0.00 0.00 3.53
3308 4640 3.935240 AATTAACCCTCCAAAACCCCT 57.065 42.857 0.00 0.00 0.00 4.79
3309 4641 5.046159 CCTTAAATTAACCCTCCAAAACCCC 60.046 44.000 0.00 0.00 0.00 4.95
3310 4642 5.046159 CCCTTAAATTAACCCTCCAAAACCC 60.046 44.000 0.00 0.00 0.00 4.11
3311 4643 5.544948 ACCCTTAAATTAACCCTCCAAAACC 59.455 40.000 0.00 0.00 0.00 3.27
3312 4644 6.675413 ACCCTTAAATTAACCCTCCAAAAC 57.325 37.500 0.00 0.00 0.00 2.43
3313 4645 7.347485 TGAAACCCTTAAATTAACCCTCCAAAA 59.653 33.333 0.00 0.00 0.00 2.44
3314 4646 6.844917 TGAAACCCTTAAATTAACCCTCCAAA 59.155 34.615 0.00 0.00 0.00 3.28
3315 4647 6.382925 TGAAACCCTTAAATTAACCCTCCAA 58.617 36.000 0.00 0.00 0.00 3.53
3316 4648 5.966684 TGAAACCCTTAAATTAACCCTCCA 58.033 37.500 0.00 0.00 0.00 3.86
3317 4649 8.777578 ATATGAAACCCTTAAATTAACCCTCC 57.222 34.615 0.00 0.00 0.00 4.30
3319 4651 9.555411 ACAATATGAAACCCTTAAATTAACCCT 57.445 29.630 0.00 0.00 0.00 4.34
3320 4652 9.594478 CACAATATGAAACCCTTAAATTAACCC 57.406 33.333 0.00 0.00 0.00 4.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.