Multiple sequence alignment - TraesCS2B01G583900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G583900 chr2B 100.000 3728 0 0 963 4690 771048566 771044839 0.000000e+00 6885.0
1 TraesCS2B01G583900 chr2B 100.000 548 0 0 1 548 771049528 771048981 0.000000e+00 1013.0
2 TraesCS2B01G583900 chr2B 83.152 920 104 28 963 1868 771159985 771159103 0.000000e+00 793.0
3 TraesCS2B01G583900 chr2B 80.873 1077 112 41 963 2025 770746150 770747146 0.000000e+00 761.0
4 TraesCS2B01G583900 chr2B 78.486 925 146 27 963 1865 79629114 79630007 1.470000e-154 556.0
5 TraesCS2B01G583900 chr2B 86.066 488 33 13 2038 2492 770747130 770747615 4.220000e-135 492.0
6 TraesCS2B01G583900 chr2B 88.119 404 35 8 155 548 771160437 771160037 7.110000e-128 468.0
7 TraesCS2B01G583900 chr2B 91.346 312 27 0 237 548 770745787 770746098 1.210000e-115 427.0
8 TraesCS2B01G583900 chr2B 92.647 272 17 1 2555 2823 770747649 770747920 5.690000e-104 388.0
9 TraesCS2B01G583900 chr2B 86.901 313 40 1 232 544 79628731 79629042 2.690000e-92 350.0
10 TraesCS2B01G583900 chr2B 75.777 772 108 48 2034 2757 79631207 79631947 2.720000e-82 316.0
11 TraesCS2B01G583900 chr2B 75.103 731 104 37 2037 2714 79322562 79321857 2.150000e-68 270.0
12 TraesCS2B01G583900 chr2B 90.244 205 12 3 3124 3320 770748175 770748379 1.290000e-65 261.0
13 TraesCS2B01G583900 chr2B 76.848 514 73 26 2311 2804 79320351 79319864 1.010000e-61 248.0
14 TraesCS2B01G583900 chr2B 77.336 428 62 20 2383 2804 79318749 79318351 2.200000e-53 220.0
15 TraesCS2B01G583900 chr2D 95.701 1070 35 5 963 2025 627980620 627979555 0.000000e+00 1711.0
16 TraesCS2B01G583900 chr2D 83.678 821 70 17 2042 2823 627979567 627978772 0.000000e+00 715.0
17 TraesCS2B01G583900 chr2D 78.672 919 151 24 963 1868 628587511 628586625 1.890000e-158 569.0
18 TraesCS2B01G583900 chr2D 77.946 925 146 32 968 1868 51078701 51077811 4.160000e-145 525.0
19 TraesCS2B01G583900 chr2D 77.909 928 146 38 963 1868 628996502 628995612 1.500000e-144 523.0
20 TraesCS2B01G583900 chr2D 88.063 444 30 8 2383 2823 627955129 627955552 5.420000e-139 505.0
21 TraesCS2B01G583900 chr2D 83.137 593 60 26 963 1535 628015916 628015344 5.420000e-139 505.0
22 TraesCS2B01G583900 chr2D 77.778 873 151 20 1013 1868 628593619 628592773 9.060000e-137 497.0
23 TraesCS2B01G583900 chr2D 87.290 417 33 8 152 548 628016384 628015968 4.280000e-125 459.0
24 TraesCS2B01G583900 chr2D 87.469 399 34 8 4295 4689 627976151 627975765 3.330000e-121 446.0
25 TraesCS2B01G583900 chr2D 87.927 381 31 9 3614 3985 627956784 627957158 7.210000e-118 435.0
26 TraesCS2B01G583900 chr2D 90.354 311 29 1 238 548 627935529 627935838 1.570000e-109 407.0
27 TraesCS2B01G583900 chr2D 88.055 293 21 4 3764 4047 627976709 627976422 7.520000e-88 335.0
28 TraesCS2B01G583900 chr2D 76.852 648 102 22 963 1595 628581391 628580777 5.850000e-84 322.0
29 TraesCS2B01G583900 chr2D 95.361 194 8 1 7 199 627981600 627981407 1.640000e-79 307.0
30 TraesCS2B01G583900 chr2D 75.620 726 106 38 2037 2714 51089783 51089081 1.280000e-75 294.0
31 TraesCS2B01G583900 chr2D 89.552 201 16 3 3124 3320 627978517 627978318 2.800000e-62 250.0
32 TraesCS2B01G583900 chr2D 80.805 323 46 7 1509 1829 628015343 628015035 6.070000e-59 239.0
33 TraesCS2B01G583900 chr2D 76.459 514 74 20 2313 2804 51095976 51096464 7.850000e-58 235.0
34 TraesCS2B01G583900 chr2D 74.198 748 108 53 2038 2757 51076785 51076095 2.820000e-57 233.0
35 TraesCS2B01G583900 chr2D 76.357 516 75 20 2311 2804 51087787 51087297 2.820000e-57 233.0
36 TraesCS2B01G583900 chr2D 90.857 175 14 2 2955 3127 627955550 627955724 2.820000e-57 233.0
37 TraesCS2B01G583900 chr2D 96.970 132 4 0 2823 2954 630269796 630269665 6.110000e-54 222.0
38 TraesCS2B01G583900 chr2D 96.212 132 5 0 2823 2954 33934384 33934253 2.840000e-52 217.0
39 TraesCS2B01G583900 chr2D 93.289 149 7 1 3124 3269 627955807 627955955 2.840000e-52 217.0
40 TraesCS2B01G583900 chr2D 96.212 132 5 0 2823 2954 630270861 630270730 2.840000e-52 217.0
41 TraesCS2B01G583900 chr2D 87.135 171 21 1 2955 3124 627978774 627978604 4.790000e-45 193.0
42 TraesCS2B01G583900 chr2D 88.050 159 8 5 3409 3564 627976863 627976713 1.340000e-40 178.0
43 TraesCS2B01G583900 chr2D 91.667 96 6 1 2235 2330 627954789 627954882 1.060000e-26 132.0
44 TraesCS2B01G583900 chr2D 91.463 82 6 1 3328 3409 627976999 627976919 1.380000e-20 111.0
45 TraesCS2B01G583900 chr2D 89.231 65 5 2 4126 4189 627977229 627977166 3.890000e-11 80.5
46 TraesCS2B01G583900 chr2D 96.774 31 1 0 4129 4159 627976029 627975999 8.000000e-03 52.8
47 TraesCS2B01G583900 chr2A 94.951 1030 46 4 963 1991 758516839 758515815 0.000000e+00 1609.0
48 TraesCS2B01G583900 chr2A 82.174 920 111 32 963 1868 758526290 758525410 0.000000e+00 741.0
49 TraesCS2B01G583900 chr2A 84.294 694 57 14 2039 2698 758515820 758515145 8.560000e-177 630.0
50 TraesCS2B01G583900 chr2A 92.081 442 22 9 103 540 758517494 758517062 1.120000e-170 610.0
51 TraesCS2B01G583900 chr2A 78.016 887 141 32 963 1830 758583650 758584501 4.190000e-140 508.0
52 TraesCS2B01G583900 chr2A 82.837 571 82 10 963 1520 758409736 758410303 9.060000e-137 497.0
53 TraesCS2B01G583900 chr2A 86.270 488 32 14 2038 2492 758413344 758413829 9.060000e-137 497.0
54 TraesCS2B01G583900 chr2A 92.966 327 20 3 224 548 758526667 758526342 1.530000e-129 473.0
55 TraesCS2B01G583900 chr2A 91.026 312 28 0 237 548 758409373 758409684 5.610000e-114 422.0
56 TraesCS2B01G583900 chr2A 92.000 275 15 3 2555 2823 758413860 758414133 3.430000e-101 379.0
57 TraesCS2B01G583900 chr2A 89.956 229 18 2 1802 2025 758413132 758413360 1.650000e-74 291.0
58 TraesCS2B01G583900 chr2A 91.133 203 12 2 3124 3320 758414373 758414575 2.150000e-68 270.0
59 TraesCS2B01G583900 chr2A 89.500 200 17 2 3124 3320 758514807 758514609 2.800000e-62 250.0
60 TraesCS2B01G583900 chr2A 90.286 175 15 2 2955 3127 758414131 758414305 1.310000e-55 228.0
61 TraesCS2B01G583900 chr2A 86.082 194 15 6 3425 3609 758513059 758512869 1.030000e-46 198.0
62 TraesCS2B01G583900 chr2A 86.957 161 20 1 2955 3114 758515052 758514892 3.730000e-41 180.0
63 TraesCS2B01G583900 chr2A 91.603 131 6 2 4559 4689 758511875 758511750 4.820000e-40 176.0
64 TraesCS2B01G583900 chr2A 85.393 178 13 7 3880 4047 758512526 758512352 6.240000e-39 172.0
65 TraesCS2B01G583900 chr2A 82.000 200 28 4 1606 1804 758412464 758412656 3.760000e-36 163.0
66 TraesCS2B01G583900 chr2A 94.059 101 6 0 2723 2823 758515150 758515050 2.260000e-33 154.0
67 TraesCS2B01G583900 chr2A 96.875 32 1 0 4125 4156 758511994 758511963 2.000000e-03 54.7
68 TraesCS2B01G583900 chr1A 87.311 331 41 1 219 548 551671873 551672203 1.230000e-100 377.0
69 TraesCS2B01G583900 chr3A 96.970 132 4 0 2823 2954 562901577 562901708 6.110000e-54 222.0
70 TraesCS2B01G583900 chr1D 96.970 132 4 0 2823 2954 459899128 459899259 6.110000e-54 222.0
71 TraesCS2B01G583900 chr1D 96.970 132 4 0 2823 2954 459900503 459900372 6.110000e-54 222.0
72 TraesCS2B01G583900 chr1D 73.853 654 106 33 2202 2817 460180306 460180932 2.860000e-47 200.0
73 TraesCS2B01G583900 chr3D 96.970 132 3 1 2823 2954 213392712 213392842 2.200000e-53 220.0
74 TraesCS2B01G583900 chr5D 96.212 132 5 0 2823 2954 432292151 432292282 2.840000e-52 217.0
75 TraesCS2B01G583900 chr5D 76.744 387 64 14 1013 1388 15570207 15569836 4.790000e-45 193.0
76 TraesCS2B01G583900 chr5B 96.212 132 5 0 2823 2954 429032992 429032861 2.840000e-52 217.0
77 TraesCS2B01G583900 chr1B 74.924 331 65 13 2500 2823 632630678 632630997 8.190000e-28 135.0
78 TraesCS2B01G583900 chr7A 100.000 28 0 0 4271 4298 198617336 198617363 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G583900 chr2B 771044839 771049528 4689 True 3949.000000 6885 100.000000 1 4690 2 chr2B.!!$R2 4689
1 TraesCS2B01G583900 chr2B 771159103 771160437 1334 True 630.500000 793 85.635500 155 1868 2 chr2B.!!$R3 1713
2 TraesCS2B01G583900 chr2B 770745787 770748379 2592 False 465.800000 761 88.235200 237 3320 5 chr2B.!!$F2 3083
3 TraesCS2B01G583900 chr2B 79628731 79631947 3216 False 407.333333 556 80.388000 232 2757 3 chr2B.!!$F1 2525
4 TraesCS2B01G583900 chr2B 79318351 79322562 4211 True 246.000000 270 76.429000 2037 2804 3 chr2B.!!$R1 767
5 TraesCS2B01G583900 chr2D 628586625 628587511 886 True 569.000000 569 78.672000 963 1868 1 chr2D.!!$R3 905
6 TraesCS2B01G583900 chr2D 628995612 628996502 890 True 523.000000 523 77.909000 963 1868 1 chr2D.!!$R5 905
7 TraesCS2B01G583900 chr2D 628592773 628593619 846 True 497.000000 497 77.778000 1013 1868 1 chr2D.!!$R4 855
8 TraesCS2B01G583900 chr2D 628015035 628016384 1349 True 401.000000 505 83.744000 152 1829 3 chr2D.!!$R9 1677
9 TraesCS2B01G583900 chr2D 627975765 627981600 5835 True 398.118182 1711 90.224455 7 4689 11 chr2D.!!$R8 4682
10 TraesCS2B01G583900 chr2D 51076095 51078701 2606 True 379.000000 525 76.072000 968 2757 2 chr2D.!!$R6 1789
11 TraesCS2B01G583900 chr2D 628580777 628581391 614 True 322.000000 322 76.852000 963 1595 1 chr2D.!!$R2 632
12 TraesCS2B01G583900 chr2D 627954789 627957158 2369 False 304.400000 505 90.360600 2235 3985 5 chr2D.!!$F3 1750
13 TraesCS2B01G583900 chr2D 51087297 51089783 2486 True 263.500000 294 75.988500 2037 2804 2 chr2D.!!$R7 767
14 TraesCS2B01G583900 chr2D 630269665 630270861 1196 True 219.500000 222 96.591000 2823 2954 2 chr2D.!!$R10 131
15 TraesCS2B01G583900 chr2A 758525410 758526667 1257 True 607.000000 741 87.570000 224 1868 2 chr2A.!!$R2 1644
16 TraesCS2B01G583900 chr2A 758583650 758584501 851 False 508.000000 508 78.016000 963 1830 1 chr2A.!!$F1 867
17 TraesCS2B01G583900 chr2A 758511750 758517494 5744 True 403.370000 1609 90.179500 103 4689 10 chr2A.!!$R1 4586
18 TraesCS2B01G583900 chr2A 758409373 758414575 5202 False 343.375000 497 88.188500 237 3320 8 chr2A.!!$F2 3083

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
327 708 1.066587 GACATCTTCCTCCGCCTCG 59.933 63.158 0.00 0.00 0.00 4.63 F
1188 1628 0.612174 ACGAGGAGGAAGCTGCTACA 60.612 55.000 0.90 0.00 0.00 2.74 F
2064 6249 0.109272 TCTTGAGTTGTAGCTCCGCG 60.109 55.000 0.00 0.00 34.74 6.46 F
2491 10532 0.667184 CACATTTCGCCCTTGGTTGC 60.667 55.000 0.00 0.00 0.00 4.17 F
2502 10543 0.681175 CTTGGTTGCCCTTCCTTTGG 59.319 55.000 0.00 0.00 0.00 3.28 F
2774 10860 1.074405 AGTGATTTCAGCCTTGGCAGA 59.926 47.619 14.54 8.57 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1327 1787 1.676014 CGACCTGAAGTGAACCATCCC 60.676 57.143 0.0 0.0 0.00 3.85 R
2488 10529 0.114954 ATGCTCCAAAGGAAGGGCAA 59.885 50.000 3.1 0.0 36.43 4.52 R
3282 12532 0.032403 GCACAGCACATCAGGCAAAA 59.968 50.000 0.0 0.0 0.00 2.44 R
3324 12574 0.171231 GAAAGCTCCGCAATCCCAAC 59.829 55.000 0.0 0.0 0.00 3.77 R
3325 12575 0.251121 TGAAAGCTCCGCAATCCCAA 60.251 50.000 0.0 0.0 0.00 4.12 R
4615 16539 0.031994 CCGTGTTTCCCTTTGCCTTG 59.968 55.000 0.0 0.0 0.00 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.885388 TCCACAACGAGGCACAACG 60.885 57.895 0.00 0.00 36.61 4.10
21 22 3.353836 CAACGAGGCACAACGGGG 61.354 66.667 0.00 0.00 35.14 5.73
42 43 2.808543 GAGGAAGCAAACACTCAACGAT 59.191 45.455 0.00 0.00 0.00 3.73
65 66 1.522580 GTCGCCATTGAGAGGAGGC 60.523 63.158 0.00 0.00 43.61 4.70
96 97 3.487544 GGAAAGATTGAAAGAATCGCCCG 60.488 47.826 0.00 0.00 0.00 6.13
327 708 1.066587 GACATCTTCCTCCGCCTCG 59.933 63.158 0.00 0.00 0.00 4.63
397 778 4.812476 CCTCATCGCCGACCGCAA 62.812 66.667 0.00 0.00 37.30 4.85
398 779 2.813474 CTCATCGCCGACCGCAAA 60.813 61.111 0.00 0.00 37.30 3.68
1010 1407 0.914417 ACTCCGGTGATGGGTTGGAT 60.914 55.000 11.17 0.00 0.00 3.41
1179 1619 1.364626 GCTACGACGACGAGGAGGAA 61.365 60.000 15.32 0.00 42.66 3.36
1182 1622 2.400158 CGACGACGAGGAGGAAGCT 61.400 63.158 0.00 0.00 42.66 3.74
1188 1628 0.612174 ACGAGGAGGAAGCTGCTACA 60.612 55.000 0.90 0.00 0.00 2.74
1226 1666 1.852157 TTCAGGGTGATCTGGGTGGC 61.852 60.000 0.00 0.00 35.58 5.01
1327 1787 1.207089 TGCCTCTACCGGATTTCACAG 59.793 52.381 9.46 0.00 0.00 3.66
1436 1905 1.918293 TGGAGTTCTCCATGGCCGT 60.918 57.895 16.47 0.00 34.33 5.68
1833 4938 3.060602 GACAGTGTCAAGTGGTAAGCTC 58.939 50.000 18.54 0.00 32.09 4.09
1872 4989 2.700897 ACCTCCTTCCCTTCATATCACG 59.299 50.000 0.00 0.00 0.00 4.35
1917 5043 5.985175 TGGTCACAATATTTATCTCCCCA 57.015 39.130 0.00 0.00 0.00 4.96
1982 6164 8.885494 TTAGAAATCCCAATTGTTTTCAGTTG 57.115 30.769 19.46 0.00 43.86 3.16
2003 6188 6.670027 AGTTGACACCTATGTTTATCTCCTCT 59.330 38.462 0.00 0.00 39.95 3.69
2005 6190 7.113658 TGACACCTATGTTTATCTCCTCTTC 57.886 40.000 0.00 0.00 39.95 2.87
2006 6191 6.667848 TGACACCTATGTTTATCTCCTCTTCA 59.332 38.462 0.00 0.00 39.95 3.02
2007 6192 7.345653 TGACACCTATGTTTATCTCCTCTTCAT 59.654 37.037 0.00 0.00 39.95 2.57
2008 6193 7.504403 ACACCTATGTTTATCTCCTCTTCATG 58.496 38.462 0.00 0.00 34.46 3.07
2009 6194 7.345653 ACACCTATGTTTATCTCCTCTTCATGA 59.654 37.037 0.00 0.00 34.46 3.07
2010 6195 7.655328 CACCTATGTTTATCTCCTCTTCATGAC 59.345 40.741 0.00 0.00 0.00 3.06
2011 6196 7.345653 ACCTATGTTTATCTCCTCTTCATGACA 59.654 37.037 0.00 0.00 0.00 3.58
2012 6197 8.373981 CCTATGTTTATCTCCTCTTCATGACAT 58.626 37.037 0.00 0.00 0.00 3.06
2013 6198 9.421806 CTATGTTTATCTCCTCTTCATGACATC 57.578 37.037 0.00 0.00 0.00 3.06
2014 6199 7.429374 TGTTTATCTCCTCTTCATGACATCT 57.571 36.000 0.00 0.00 0.00 2.90
2015 6200 8.539117 TGTTTATCTCCTCTTCATGACATCTA 57.461 34.615 0.00 0.00 0.00 1.98
2016 6201 9.152327 TGTTTATCTCCTCTTCATGACATCTAT 57.848 33.333 0.00 0.00 0.00 1.98
2017 6202 9.638239 GTTTATCTCCTCTTCATGACATCTATC 57.362 37.037 0.00 0.00 0.00 2.08
2018 6203 9.599056 TTTATCTCCTCTTCATGACATCTATCT 57.401 33.333 0.00 0.00 0.00 1.98
2019 6204 9.599056 TTATCTCCTCTTCATGACATCTATCTT 57.401 33.333 0.00 0.00 0.00 2.40
2020 6205 7.287512 TCTCCTCTTCATGACATCTATCTTG 57.712 40.000 0.00 0.00 0.00 3.02
2021 6206 7.065504 TCTCCTCTTCATGACATCTATCTTGA 58.934 38.462 0.00 0.00 32.55 3.02
2022 6207 7.231115 TCTCCTCTTCATGACATCTATCTTGAG 59.769 40.741 0.00 0.00 35.07 3.02
2023 6208 6.838090 TCCTCTTCATGACATCTATCTTGAGT 59.162 38.462 0.00 0.00 35.07 3.41
2024 6209 7.344093 TCCTCTTCATGACATCTATCTTGAGTT 59.656 37.037 0.00 0.00 35.07 3.01
2025 6210 7.986320 CCTCTTCATGACATCTATCTTGAGTTT 59.014 37.037 0.00 0.00 35.07 2.66
2026 6211 9.381033 CTCTTCATGACATCTATCTTGAGTTTT 57.619 33.333 0.00 0.00 35.07 2.43
2027 6212 9.730705 TCTTCATGACATCTATCTTGAGTTTTT 57.269 29.630 0.00 0.00 35.07 1.94
2064 6249 0.109272 TCTTGAGTTGTAGCTCCGCG 60.109 55.000 0.00 0.00 34.74 6.46
2158 6383 3.699538 ACTTCCTGTCAAAAACCCAACTC 59.300 43.478 0.00 0.00 0.00 3.01
2191 6419 4.606961 CACGCAGATGTAAACCTTTTTGT 58.393 39.130 0.00 0.00 0.00 2.83
2336 8653 1.339631 TGCAATGGAACCTAGGAACCG 60.340 52.381 17.98 6.86 0.00 4.44
2431 8776 6.611381 TCTTTAATTTCTTTCTCATGCGTGG 58.389 36.000 5.98 0.00 0.00 4.94
2476 10517 6.296026 ACACACAAATTGGAGTACTACACAT 58.704 36.000 7.49 2.16 0.00 3.21
2479 10520 7.803189 CACACAAATTGGAGTACTACACATTTC 59.197 37.037 7.49 0.00 0.00 2.17
2485 10526 3.369157 GGAGTACTACACATTTCGCCCTT 60.369 47.826 0.00 0.00 0.00 3.95
2486 10527 3.596214 AGTACTACACATTTCGCCCTTG 58.404 45.455 0.00 0.00 0.00 3.61
2487 10528 1.821216 ACTACACATTTCGCCCTTGG 58.179 50.000 0.00 0.00 0.00 3.61
2488 10529 1.073284 ACTACACATTTCGCCCTTGGT 59.927 47.619 0.00 0.00 0.00 3.67
2489 10530 2.159382 CTACACATTTCGCCCTTGGTT 58.841 47.619 0.00 0.00 0.00 3.67
2490 10531 0.673437 ACACATTTCGCCCTTGGTTG 59.327 50.000 0.00 0.00 0.00 3.77
2491 10532 0.667184 CACATTTCGCCCTTGGTTGC 60.667 55.000 0.00 0.00 0.00 4.17
2492 10533 1.079888 CATTTCGCCCTTGGTTGCC 60.080 57.895 0.00 0.00 0.00 4.52
2493 10534 2.282783 ATTTCGCCCTTGGTTGCCC 61.283 57.895 0.00 0.00 0.00 5.36
2494 10535 2.730129 ATTTCGCCCTTGGTTGCCCT 62.730 55.000 0.00 0.00 0.00 5.19
2495 10536 2.937959 TTTCGCCCTTGGTTGCCCTT 62.938 55.000 0.00 0.00 0.00 3.95
2496 10537 3.373565 CGCCCTTGGTTGCCCTTC 61.374 66.667 0.00 0.00 0.00 3.46
2497 10538 2.997315 GCCCTTGGTTGCCCTTCC 60.997 66.667 0.00 0.00 0.00 3.46
2502 10543 0.681175 CTTGGTTGCCCTTCCTTTGG 59.319 55.000 0.00 0.00 0.00 3.28
2525 10566 4.015084 AGCATGATTGAGCTTAACTGCTT 58.985 39.130 15.03 4.68 44.17 3.91
2526 10567 4.461781 AGCATGATTGAGCTTAACTGCTTT 59.538 37.500 15.03 0.83 44.17 3.51
2527 10568 5.649395 AGCATGATTGAGCTTAACTGCTTTA 59.351 36.000 15.03 0.00 44.17 1.85
2528 10569 5.970023 GCATGATTGAGCTTAACTGCTTTAG 59.030 40.000 12.33 0.00 44.17 1.85
2543 10584 7.419711 ACTGCTTTAGCTAGTACCATTAAGA 57.580 36.000 3.10 0.00 42.66 2.10
2618 10661 1.287425 GCTACCGGGTTCTCAATTCG 58.713 55.000 4.31 0.00 0.00 3.34
2627 10670 5.166398 CGGGTTCTCAATTCGTAAGTTACT 58.834 41.667 11.17 0.00 39.48 2.24
2645 10691 8.601845 AAGTTACTTGCAATTTCATTAAACCC 57.398 30.769 0.00 0.00 0.00 4.11
2699 10770 3.878778 AGAACCATTCGAATCTCAAGGG 58.121 45.455 7.92 8.01 34.02 3.95
2771 10857 1.831580 AGAGTGATTTCAGCCTTGGC 58.168 50.000 2.97 2.97 0.00 4.52
2774 10860 1.074405 AGTGATTTCAGCCTTGGCAGA 59.926 47.619 14.54 8.57 0.00 4.26
2850 11266 3.748048 TCAGTCAGTGATAAACAGCTTGC 59.252 43.478 0.00 0.00 0.00 4.01
2962 11918 1.742761 ATCTCCAATCCGCTTGTGTG 58.257 50.000 0.00 0.00 32.61 3.82
2970 11926 4.158384 CAATCCGCTTGTGTGAATGTAAC 58.842 43.478 0.00 0.00 0.00 2.50
2973 11929 1.724654 CGCTTGTGTGAATGTAACGGC 60.725 52.381 0.00 0.00 0.00 5.68
2978 11934 1.126113 GTGTGAATGTAACGGCGTGAG 59.874 52.381 15.70 0.00 0.00 3.51
3131 12175 4.224274 TTGTTCGTCGCGGGTGGT 62.224 61.111 6.13 0.00 0.00 4.16
3239 12284 3.726144 AGCTGGAGGGGCTGCTTC 61.726 66.667 0.00 0.00 38.73 3.86
3257 12307 2.787473 TCCCTTGGTTGTGATAGCTG 57.213 50.000 0.00 0.00 0.00 4.24
3275 12521 2.746362 GCTGGTCTCAGATCCTTTTGTG 59.254 50.000 0.00 0.00 43.49 3.33
3282 12532 5.936956 GTCTCAGATCCTTTTGTGAGTTCAT 59.063 40.000 7.14 0.00 38.09 2.57
3296 12546 3.248266 GAGTTCATTTTGCCTGATGTGC 58.752 45.455 0.00 0.00 0.00 4.57
3320 12570 1.134848 GCTGGTCTTTTGGTTTGTGCA 60.135 47.619 0.00 0.00 0.00 4.57
3321 12571 2.676463 GCTGGTCTTTTGGTTTGTGCAA 60.676 45.455 0.00 0.00 0.00 4.08
3322 12572 3.189285 CTGGTCTTTTGGTTTGTGCAAG 58.811 45.455 0.00 0.00 0.00 4.01
3323 12573 2.828520 TGGTCTTTTGGTTTGTGCAAGA 59.171 40.909 0.00 0.00 0.00 3.02
3324 12574 3.119173 TGGTCTTTTGGTTTGTGCAAGAG 60.119 43.478 0.00 0.00 0.00 2.85
3325 12575 3.119137 GGTCTTTTGGTTTGTGCAAGAGT 60.119 43.478 0.00 0.00 0.00 3.24
3367 14231 2.226437 CGCTGTACCATGTTTGCTCTTT 59.774 45.455 0.00 0.00 0.00 2.52
3422 14344 3.376234 TCGACAGTGAATTAGTACTCCCG 59.624 47.826 0.00 0.00 0.00 5.14
3423 14345 3.488721 CGACAGTGAATTAGTACTCCCGG 60.489 52.174 0.00 0.00 0.00 5.73
3425 14347 2.431057 CAGTGAATTAGTACTCCCGGCT 59.569 50.000 0.00 0.00 0.00 5.52
3426 14348 2.431057 AGTGAATTAGTACTCCCGGCTG 59.569 50.000 0.00 0.00 0.00 4.85
3427 14349 2.429610 GTGAATTAGTACTCCCGGCTGA 59.570 50.000 0.00 0.00 0.00 4.26
3428 14350 3.069729 GTGAATTAGTACTCCCGGCTGAT 59.930 47.826 0.00 0.00 0.00 2.90
3429 14351 3.321111 TGAATTAGTACTCCCGGCTGATC 59.679 47.826 0.00 0.00 0.00 2.92
3430 14352 2.750141 TTAGTACTCCCGGCTGATCT 57.250 50.000 0.00 0.00 0.00 2.75
3463 14385 7.197071 TCGCATGTTAGTTTTGTCTTTACAT 57.803 32.000 0.00 0.00 34.97 2.29
3465 14387 8.775527 TCGCATGTTAGTTTTGTCTTTACATTA 58.224 29.630 0.00 0.00 34.97 1.90
3466 14388 8.837059 CGCATGTTAGTTTTGTCTTTACATTAC 58.163 33.333 0.00 0.00 34.97 1.89
3467 14389 9.672086 GCATGTTAGTTTTGTCTTTACATTACA 57.328 29.630 0.00 0.00 34.97 2.41
3476 14401 6.533819 TGTCTTTACATTACAGTTTGACCG 57.466 37.500 0.00 0.00 0.00 4.79
3596 14533 9.844257 TGATGTGGTATTGTGAACATTGATATA 57.156 29.630 0.00 0.00 33.51 0.86
3650 14851 3.308438 AAACTGTGCAATCTCCAATGC 57.692 42.857 0.00 0.00 42.86 3.56
3663 14866 0.388907 CCAATGCACAGAAAAGGGCG 60.389 55.000 0.00 0.00 0.00 6.13
3664 14867 0.388907 CAATGCACAGAAAAGGGCGG 60.389 55.000 0.00 0.00 0.00 6.13
3681 14884 1.197721 GCGGGACTGAACTTGATGTTG 59.802 52.381 0.00 0.00 39.30 3.33
3682 14885 1.806542 CGGGACTGAACTTGATGTTGG 59.193 52.381 0.00 0.00 39.30 3.77
3696 14937 0.033781 TGTTGGGAAGTAACCGACGG 59.966 55.000 13.61 13.61 43.95 4.79
3709 14950 1.270412 ACCGACGGCAGTAACATGAAA 60.270 47.619 15.39 0.00 0.00 2.69
3723 14964 9.188588 CAGTAACATGAAATTCATCCAATATGC 57.811 33.333 5.36 0.00 34.28 3.14
3954 15777 2.031682 CAGAGCAAGCACACCTGTAAAC 60.032 50.000 0.00 0.00 0.00 2.01
4017 15844 5.705905 AGTATGTGTAAAAACTGAAGAGGGC 59.294 40.000 0.00 0.00 0.00 5.19
4020 15847 1.136057 GTAAAAACTGAAGAGGGCGCG 60.136 52.381 0.00 0.00 0.00 6.86
4030 15857 1.154035 GAGGGCGCGGTTCAAAATG 60.154 57.895 8.83 0.00 0.00 2.32
4039 15872 4.262976 GCGCGGTTCAAAATGAAATAAGAG 59.737 41.667 8.83 0.00 38.22 2.85
4051 15964 9.635520 AAAATGAAATAAGAGAATGAAGTGCAG 57.364 29.630 0.00 0.00 0.00 4.41
4074 15987 6.801862 CAGCAGCTATTGTTGTTACCTTAAAC 59.198 38.462 0.00 0.00 33.74 2.01
4078 15991 6.370718 AGCTATTGTTGTTACCTTAAACGGAG 59.629 38.462 0.00 0.00 31.76 4.63
4080 15993 7.331687 GCTATTGTTGTTACCTTAAACGGAGTA 59.668 37.037 0.00 0.00 45.00 2.59
4081 15994 9.206870 CTATTGTTGTTACCTTAAACGGAGTAA 57.793 33.333 0.00 0.00 45.00 2.24
4082 15995 6.843069 TGTTGTTACCTTAAACGGAGTAAC 57.157 37.500 5.22 5.22 45.00 2.50
4083 15996 6.581712 TGTTGTTACCTTAAACGGAGTAACT 58.418 36.000 11.77 0.00 45.00 2.24
4084 15997 6.479660 TGTTGTTACCTTAAACGGAGTAACTG 59.520 38.462 11.77 0.00 45.00 3.16
4085 15998 6.160576 TGTTACCTTAAACGGAGTAACTGT 57.839 37.500 11.77 0.00 45.00 3.55
4086 15999 7.283625 TGTTACCTTAAACGGAGTAACTGTA 57.716 36.000 11.77 0.00 45.00 2.74
4087 16000 7.721402 TGTTACCTTAAACGGAGTAACTGTAA 58.279 34.615 11.77 0.00 45.00 2.41
4089 16002 9.208022 GTTACCTTAAACGGAGTAACTGTAAAT 57.792 33.333 0.00 0.00 45.00 1.40
4092 16005 9.428097 ACCTTAAACGGAGTAACTGTAAATTAG 57.572 33.333 0.00 0.00 45.00 1.73
4095 16008 5.349061 ACGGAGTAACTGTAAATTAGGGG 57.651 43.478 0.00 0.00 41.94 4.79
4096 16009 4.779489 ACGGAGTAACTGTAAATTAGGGGT 59.221 41.667 0.00 0.00 41.94 4.95
4097 16010 5.957774 ACGGAGTAACTGTAAATTAGGGGTA 59.042 40.000 0.00 0.00 41.94 3.69
4098 16011 6.127338 ACGGAGTAACTGTAAATTAGGGGTAC 60.127 42.308 0.00 0.00 41.94 3.34
4099 16012 6.097412 CGGAGTAACTGTAAATTAGGGGTACT 59.903 42.308 3.61 3.61 0.00 2.73
4100 16013 7.270779 GGAGTAACTGTAAATTAGGGGTACTG 58.729 42.308 7.33 0.00 0.00 2.74
4101 16014 7.093156 GGAGTAACTGTAAATTAGGGGTACTGT 60.093 40.741 7.33 0.00 33.07 3.55
4103 16016 9.325248 AGTAACTGTAAATTAGGGGTACTGTTA 57.675 33.333 10.34 10.34 39.29 2.41
4106 16019 8.619683 ACTGTAAATTAGGGGTACTGTTATCT 57.380 34.615 0.00 0.00 28.92 1.98
4108 16021 9.543783 CTGTAAATTAGGGGTACTGTTATCTTC 57.456 37.037 0.00 0.00 0.00 2.87
4112 16025 9.503369 AAATTAGGGGTACTGTTATCTTCTACT 57.497 33.333 0.00 0.00 0.00 2.57
4114 16027 9.810870 ATTAGGGGTACTGTTATCTTCTACTAG 57.189 37.037 0.00 0.00 0.00 2.57
4115 16028 7.223472 AGGGGTACTGTTATCTTCTACTAGT 57.777 40.000 0.00 0.00 0.00 2.57
4117 16030 8.957926 AGGGGTACTGTTATCTTCTACTAGTAT 58.042 37.037 2.33 0.00 0.00 2.12
4118 16031 9.585369 GGGGTACTGTTATCTTCTACTAGTATT 57.415 37.037 2.33 0.00 0.00 1.89
4132 16045 7.847096 TCTACTAGTATTGATGGTTTTCAGCA 58.153 34.615 2.33 0.00 40.37 4.41
4133 16046 6.743575 ACTAGTATTGATGGTTTTCAGCAC 57.256 37.500 0.00 0.00 41.97 4.40
4134 16047 6.237901 ACTAGTATTGATGGTTTTCAGCACA 58.762 36.000 0.00 0.00 41.97 4.57
4136 16049 6.594788 AGTATTGATGGTTTTCAGCACATT 57.405 33.333 0.00 0.00 41.97 2.71
4137 16050 6.996509 AGTATTGATGGTTTTCAGCACATTT 58.003 32.000 0.00 0.00 41.97 2.32
4138 16051 6.869913 AGTATTGATGGTTTTCAGCACATTTG 59.130 34.615 0.00 0.00 41.97 2.32
4139 16052 4.669206 TGATGGTTTTCAGCACATTTGT 57.331 36.364 0.00 0.00 36.79 2.83
4140 16053 5.781210 TGATGGTTTTCAGCACATTTGTA 57.219 34.783 0.00 0.00 36.79 2.41
4141 16054 6.343716 TGATGGTTTTCAGCACATTTGTAT 57.656 33.333 0.00 0.00 36.79 2.29
4142 16055 6.389091 TGATGGTTTTCAGCACATTTGTATC 58.611 36.000 0.00 0.00 36.79 2.24
4143 16056 5.132897 TGGTTTTCAGCACATTTGTATCC 57.867 39.130 0.00 0.00 0.00 2.59
4146 16059 5.988561 GGTTTTCAGCACATTTGTATCCAAA 59.011 36.000 0.00 0.00 44.27 3.28
4165 16078 7.654022 TCCAAATGGAGTAAAAACTCAAACT 57.346 32.000 7.75 0.00 39.78 2.66
4166 16079 7.488322 TCCAAATGGAGTAAAAACTCAAACTG 58.512 34.615 7.75 0.00 39.78 3.16
4167 16080 6.701400 CCAAATGGAGTAAAAACTCAAACTGG 59.299 38.462 7.75 4.18 38.44 4.00
4168 16081 7.417342 CCAAATGGAGTAAAAACTCAAACTGGA 60.417 37.037 7.75 0.00 38.44 3.86
4169 16082 7.839680 AATGGAGTAAAAACTCAAACTGGAT 57.160 32.000 7.75 0.00 38.44 3.41
4171 16084 7.654022 TGGAGTAAAAACTCAAACTGGATTT 57.346 32.000 7.75 0.00 38.44 2.17
4172 16085 7.712797 TGGAGTAAAAACTCAAACTGGATTTC 58.287 34.615 7.75 0.00 38.44 2.17
4173 16086 6.856426 GGAGTAAAAACTCAAACTGGATTTCG 59.144 38.462 7.75 0.00 38.44 3.46
4174 16087 6.735130 AGTAAAAACTCAAACTGGATTTCGG 58.265 36.000 0.00 0.00 0.00 4.30
4175 16088 3.643159 AAACTCAAACTGGATTTCGGC 57.357 42.857 0.00 0.00 0.00 5.54
4179 16092 4.394729 ACTCAAACTGGATTTCGGCTTTA 58.605 39.130 0.00 0.00 0.00 1.85
4182 16095 4.215399 TCAAACTGGATTTCGGCTTTACTG 59.785 41.667 0.00 0.00 0.00 2.74
4183 16096 3.695830 ACTGGATTTCGGCTTTACTGA 57.304 42.857 0.00 0.00 0.00 3.41
4184 16097 4.015872 ACTGGATTTCGGCTTTACTGAA 57.984 40.909 0.00 0.00 42.07 3.02
4185 16098 3.751698 ACTGGATTTCGGCTTTACTGAAC 59.248 43.478 0.00 0.00 43.49 3.18
4186 16099 3.745799 TGGATTTCGGCTTTACTGAACA 58.254 40.909 0.00 0.00 43.49 3.18
4187 16100 3.751175 TGGATTTCGGCTTTACTGAACAG 59.249 43.478 0.00 0.00 43.49 3.16
4188 16101 3.751698 GGATTTCGGCTTTACTGAACAGT 59.248 43.478 12.10 12.10 43.49 3.55
4189 16102 4.378459 GGATTTCGGCTTTACTGAACAGTG 60.378 45.833 16.37 2.63 43.49 3.66
4190 16103 2.902705 TCGGCTTTACTGAACAGTGT 57.097 45.000 16.37 0.00 42.52 3.55
4191 16104 3.188159 TCGGCTTTACTGAACAGTGTT 57.812 42.857 8.61 8.61 42.52 3.32
4192 16105 2.869801 TCGGCTTTACTGAACAGTGTTG 59.130 45.455 14.57 2.19 42.52 3.33
4193 16106 2.869801 CGGCTTTACTGAACAGTGTTGA 59.130 45.455 14.57 3.64 42.52 3.18
4194 16107 3.311322 CGGCTTTACTGAACAGTGTTGAA 59.689 43.478 14.57 0.23 42.52 2.69
4195 16108 4.024048 CGGCTTTACTGAACAGTGTTGAAT 60.024 41.667 14.57 0.00 42.52 2.57
4196 16109 5.505654 CGGCTTTACTGAACAGTGTTGAATT 60.506 40.000 14.57 0.00 42.52 2.17
4197 16110 6.293190 CGGCTTTACTGAACAGTGTTGAATTA 60.293 38.462 14.57 0.00 42.52 1.40
4198 16111 6.856426 GGCTTTACTGAACAGTGTTGAATTAC 59.144 38.462 14.57 0.00 42.52 1.89
4199 16112 6.856426 GCTTTACTGAACAGTGTTGAATTACC 59.144 38.462 14.57 0.00 42.52 2.85
4200 16113 6.533819 TTACTGAACAGTGTTGAATTACCG 57.466 37.500 14.57 0.00 42.52 4.02
4201 16114 4.448210 ACTGAACAGTGTTGAATTACCGT 58.552 39.130 14.57 0.00 40.75 4.83
4202 16115 5.603596 ACTGAACAGTGTTGAATTACCGTA 58.396 37.500 14.57 0.00 40.75 4.02
4203 16116 6.050432 ACTGAACAGTGTTGAATTACCGTAA 58.950 36.000 14.57 0.00 40.75 3.18
4204 16117 6.539464 ACTGAACAGTGTTGAATTACCGTAAA 59.461 34.615 14.57 0.00 40.75 2.01
4205 16118 7.066043 ACTGAACAGTGTTGAATTACCGTAAAA 59.934 33.333 14.57 0.00 40.75 1.52
4206 16119 7.188157 TGAACAGTGTTGAATTACCGTAAAAC 58.812 34.615 14.57 0.00 0.00 2.43
4207 16120 6.930667 ACAGTGTTGAATTACCGTAAAACT 57.069 33.333 0.00 0.00 0.00 2.66
4208 16121 6.951643 ACAGTGTTGAATTACCGTAAAACTC 58.048 36.000 0.00 0.00 0.00 3.01
4209 16122 6.017687 ACAGTGTTGAATTACCGTAAAACTCC 60.018 38.462 0.00 0.00 0.00 3.85
4210 16123 6.204108 CAGTGTTGAATTACCGTAAAACTCCT 59.796 38.462 0.00 0.00 0.00 3.69
4211 16124 6.769341 AGTGTTGAATTACCGTAAAACTCCTT 59.231 34.615 0.00 0.00 0.00 3.36
4212 16125 7.283807 AGTGTTGAATTACCGTAAAACTCCTTT 59.716 33.333 0.00 0.00 0.00 3.11
4213 16126 8.558700 GTGTTGAATTACCGTAAAACTCCTTTA 58.441 33.333 0.00 0.00 0.00 1.85
4214 16127 9.287373 TGTTGAATTACCGTAAAACTCCTTTAT 57.713 29.630 0.00 0.00 32.14 1.40
4215 16128 9.764870 GTTGAATTACCGTAAAACTCCTTTATC 57.235 33.333 0.00 0.00 32.14 1.75
4216 16129 9.729281 TTGAATTACCGTAAAACTCCTTTATCT 57.271 29.630 0.00 0.00 32.14 1.98
4217 16130 9.729281 TGAATTACCGTAAAACTCCTTTATCTT 57.271 29.630 0.00 0.00 32.14 2.40
4221 16134 9.783081 TTACCGTAAAACTCCTTTATCTTTTCT 57.217 29.630 0.00 0.00 32.14 2.52
4222 16135 8.320396 ACCGTAAAACTCCTTTATCTTTTCTC 57.680 34.615 0.00 0.00 32.14 2.87
4224 16137 9.000486 CCGTAAAACTCCTTTATCTTTTCTCTT 58.000 33.333 0.00 0.00 32.14 2.85
4245 16158 4.628963 TTTAAAAGCTAGTCCCTCCGTT 57.371 40.909 0.00 0.00 0.00 4.44
4246 16159 4.628963 TTAAAAGCTAGTCCCTCCGTTT 57.371 40.909 0.00 0.00 0.00 3.60
4247 16160 3.503800 AAAAGCTAGTCCCTCCGTTTT 57.496 42.857 0.00 0.00 0.00 2.43
4249 16162 3.889520 AAGCTAGTCCCTCCGTTTTAG 57.110 47.619 0.00 0.00 0.00 1.85
4254 16167 5.302313 AGCTAGTCCCTCCGTTTTAGAATAG 59.698 44.000 0.00 0.00 0.00 1.73
4256 16169 6.015265 GCTAGTCCCTCCGTTTTAGAATAGAT 60.015 42.308 0.00 0.00 29.06 1.98
4259 16172 5.984323 GTCCCTCCGTTTTAGAATAGATGAC 59.016 44.000 0.00 0.00 0.00 3.06
4261 16174 5.298347 CCTCCGTTTTAGAATAGATGACCC 58.702 45.833 0.00 0.00 0.00 4.46
4262 16175 5.163343 CCTCCGTTTTAGAATAGATGACCCA 60.163 44.000 0.00 0.00 0.00 4.51
4263 16176 6.302535 TCCGTTTTAGAATAGATGACCCAA 57.697 37.500 0.00 0.00 0.00 4.12
4264 16177 6.110707 TCCGTTTTAGAATAGATGACCCAAC 58.889 40.000 0.00 0.00 0.00 3.77
4267 16180 7.120726 CCGTTTTAGAATAGATGACCCAACTTT 59.879 37.037 0.00 0.00 0.00 2.66
4268 16181 7.962918 CGTTTTAGAATAGATGACCCAACTTTG 59.037 37.037 0.00 0.00 0.00 2.77
4269 16182 8.793592 GTTTTAGAATAGATGACCCAACTTTGT 58.206 33.333 0.00 0.00 0.00 2.83
4271 16184 9.667107 TTTAGAATAGATGACCCAACTTTGTAG 57.333 33.333 0.00 0.00 0.00 2.74
4273 16186 7.690256 AGAATAGATGACCCAACTTTGTAGTT 58.310 34.615 0.00 0.00 45.40 2.24
4287 16200 8.706322 AACTTTGTAGTTGGGTCATCTATTTT 57.294 30.769 0.00 0.00 42.91 1.82
4288 16201 8.110860 ACTTTGTAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
4289 16202 7.176690 ACTTTGTAGTTGGGTCATCTATTTTGG 59.823 37.037 0.00 0.00 0.00 3.28
4292 16205 4.860022 AGTTGGGTCATCTATTTTGGAGG 58.140 43.478 0.00 0.00 0.00 4.30
4304 16217 2.024176 TTTGGAGGGAGTAGACTGCA 57.976 50.000 3.48 0.00 35.89 4.41
4305 16218 2.024176 TTGGAGGGAGTAGACTGCAA 57.976 50.000 3.48 0.00 41.71 4.08
4321 16234 5.990386 AGACTGCAATGATCTGATACATGTC 59.010 40.000 0.00 0.00 0.00 3.06
4365 16284 4.937620 TCTGCTGCTGGAACTGTAAATTAG 59.062 41.667 6.69 0.00 0.00 1.73
4366 16285 4.651778 TGCTGCTGGAACTGTAAATTAGT 58.348 39.130 0.00 0.00 0.00 2.24
4367 16286 5.800296 TGCTGCTGGAACTGTAAATTAGTA 58.200 37.500 0.00 0.00 0.00 1.82
4368 16287 5.874810 TGCTGCTGGAACTGTAAATTAGTAG 59.125 40.000 0.00 0.00 0.00 2.57
4369 16288 5.875359 GCTGCTGGAACTGTAAATTAGTAGT 59.125 40.000 0.00 0.00 0.00 2.73
4370 16289 6.183360 GCTGCTGGAACTGTAAATTAGTAGTG 60.183 42.308 0.00 0.00 0.00 2.74
4388 16307 9.582431 TTAGTAGTGCTATTATCTTGTGTTGAC 57.418 33.333 0.00 0.00 0.00 3.18
4395 16314 4.718858 TTATCTTGTGTTGACGGTTTCG 57.281 40.909 0.00 0.00 43.02 3.46
4400 16319 0.302589 GTGTTGACGGTTTCGGTGTC 59.697 55.000 0.00 0.00 41.39 3.67
4411 16330 3.490078 GGTTTCGGTGTCAATTGCTTCAA 60.490 43.478 0.00 0.00 0.00 2.69
4414 16333 4.582701 TCGGTGTCAATTGCTTCAATTT 57.417 36.364 0.00 0.00 40.60 1.82
4422 16341 4.746115 TCAATTGCTTCAATTTCAGCACAC 59.254 37.500 7.67 0.00 45.77 3.82
4428 16347 5.163571 TGCTTCAATTTCAGCACACTTGTAA 60.164 36.000 4.48 0.00 41.20 2.41
4455 16378 7.255346 CCAAATGGAGTAAAGACGTTTACCTTT 60.255 37.037 6.54 5.98 46.44 3.11
4463 16386 5.895216 AAGACGTTTACCTTTACTGAACG 57.105 39.130 5.51 5.51 45.96 3.95
4486 16409 4.039852 GGTCCTAGATCTCAGGGTTGAATC 59.960 50.000 0.00 0.00 33.66 2.52
4496 16420 4.531854 TCAGGGTTGAATCACTGTGAAAA 58.468 39.130 15.31 7.16 39.58 2.29
4533 16457 0.746659 AAACAAAGGTCCACAGCAGC 59.253 50.000 0.00 0.00 0.00 5.25
4537 16461 2.703675 AAAGGTCCACAGCAGCCAGG 62.704 60.000 0.00 0.00 0.00 4.45
4544 16468 4.031129 CAGCAGCCAGGCAGGTCT 62.031 66.667 15.80 1.32 40.61 3.85
4547 16471 2.268280 CAGCCAGGCAGGTCTCTG 59.732 66.667 15.80 0.00 43.64 3.35
4548 16472 2.121385 AGCCAGGCAGGTCTCTGA 59.879 61.111 15.80 0.00 43.49 3.27
4615 16539 2.710096 TCTGGGTTTTGATCCGGATC 57.290 50.000 33.41 33.41 33.81 3.36
4650 16574 2.751436 GGCAGCTCGGGCATTCAA 60.751 61.111 11.40 0.00 41.70 2.69
4651 16575 2.486966 GCAGCTCGGGCATTCAAC 59.513 61.111 11.40 0.00 41.70 3.18
4689 16613 0.648958 GTCCGTGCGCCATTAACTAC 59.351 55.000 4.18 0.00 0.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.885388 CGTTGTGCCTCGTTGTGGA 60.885 57.895 0.00 0.00 0.00 4.02
1 2 2.631428 CGTTGTGCCTCGTTGTGG 59.369 61.111 0.00 0.00 0.00 4.17
2 3 2.631428 CCGTTGTGCCTCGTTGTG 59.369 61.111 0.00 0.00 0.00 3.33
3 4 2.590575 CCCGTTGTGCCTCGTTGT 60.591 61.111 0.00 0.00 0.00 3.32
4 5 3.353836 CCCCGTTGTGCCTCGTTG 61.354 66.667 0.00 0.00 0.00 4.10
5 6 3.530910 CTCCCCGTTGTGCCTCGTT 62.531 63.158 0.00 0.00 0.00 3.85
16 17 1.228154 GTGTTTGCTTCCTCCCCGT 60.228 57.895 0.00 0.00 0.00 5.28
18 19 0.110486 TGAGTGTTTGCTTCCTCCCC 59.890 55.000 0.00 0.00 0.00 4.81
21 22 2.210116 TCGTTGAGTGTTTGCTTCCTC 58.790 47.619 0.00 0.00 0.00 3.71
65 66 7.524717 TTCTTTCAATCTTTCCTAGGGTTTG 57.475 36.000 9.46 5.10 0.00 2.93
124 125 6.524586 GCCGAGAACTCAAATGAATAAGTTTG 59.475 38.462 2.78 0.00 36.82 2.93
327 708 1.566298 ATGAGGTCTTCTGGGGTGGC 61.566 60.000 0.00 0.00 0.00 5.01
410 791 1.227383 GGGGTGGATCTTGCGGAAT 59.773 57.895 0.00 0.00 0.00 3.01
1073 1471 2.180204 GCCATGTCGTCGGGGATTG 61.180 63.158 0.00 0.00 0.00 2.67
1182 1622 2.752640 TCCGCCGTAGCTGTAGCA 60.753 61.111 6.65 0.00 45.16 3.49
1188 1628 3.507009 GACGTCTCCGCCGTAGCT 61.507 66.667 8.70 0.00 38.92 3.32
1226 1666 1.742880 TGCTTAGCTTGGAGCAGCG 60.743 57.895 13.18 0.00 45.56 5.18
1327 1787 1.676014 CGACCTGAAGTGAACCATCCC 60.676 57.143 0.00 0.00 0.00 3.85
1482 1951 4.357279 GTGCCTTGGCCTGCCTCT 62.357 66.667 9.97 0.00 36.94 3.69
1539 4153 2.759538 TTCGCCAAACCGTAAAACTG 57.240 45.000 0.00 0.00 0.00 3.16
1833 4938 3.152341 AGGTTTCTGGCATTCAACAGAG 58.848 45.455 0.00 0.00 43.84 3.35
1872 4989 2.833794 TGAACTGTAAGCTGTGTGGTC 58.166 47.619 0.00 0.00 37.60 4.02
1982 6164 7.113658 TGAAGAGGAGATAAACATAGGTGTC 57.886 40.000 0.00 0.00 37.67 3.67
2024 6209 8.602424 TCAAGATAGATGTCCCAGTAAGAAAAA 58.398 33.333 0.00 0.00 0.00 1.94
2025 6210 8.146053 TCAAGATAGATGTCCCAGTAAGAAAA 57.854 34.615 0.00 0.00 0.00 2.29
2026 6211 7.400339 ACTCAAGATAGATGTCCCAGTAAGAAA 59.600 37.037 0.00 0.00 0.00 2.52
2027 6212 6.897966 ACTCAAGATAGATGTCCCAGTAAGAA 59.102 38.462 0.00 0.00 0.00 2.52
2028 6213 6.436027 ACTCAAGATAGATGTCCCAGTAAGA 58.564 40.000 0.00 0.00 0.00 2.10
2029 6214 6.723298 ACTCAAGATAGATGTCCCAGTAAG 57.277 41.667 0.00 0.00 0.00 2.34
2030 6215 6.440647 ACAACTCAAGATAGATGTCCCAGTAA 59.559 38.462 0.00 0.00 27.18 2.24
2031 6216 5.958380 ACAACTCAAGATAGATGTCCCAGTA 59.042 40.000 0.00 0.00 27.18 2.74
2032 6217 4.780021 ACAACTCAAGATAGATGTCCCAGT 59.220 41.667 0.00 0.00 27.18 4.00
2064 6249 4.220602 AGATGAAATAAAGTGCCCCAACAC 59.779 41.667 0.00 0.00 41.02 3.32
2140 6342 3.023832 ACAGAGTTGGGTTTTTGACAGG 58.976 45.455 0.00 0.00 0.00 4.00
2158 6383 1.859427 ATCTGCGTGCAGGCAAACAG 61.859 55.000 31.36 20.90 43.39 3.16
2191 6419 2.074967 CTGCCAACAGGGGAAGGTA 58.925 57.895 0.00 0.00 40.48 3.08
2351 8668 3.641437 TTGCACATAGAAAGCACCAAC 57.359 42.857 0.00 0.00 38.11 3.77
2381 8703 3.690460 AGCACATACAAAAAGGAGAGGG 58.310 45.455 0.00 0.00 0.00 4.30
2487 10528 0.827507 TGCTCCAAAGGAAGGGCAAC 60.828 55.000 0.00 0.00 32.08 4.17
2488 10529 0.114954 ATGCTCCAAAGGAAGGGCAA 59.885 50.000 3.10 0.00 36.43 4.52
2489 10530 0.612732 CATGCTCCAAAGGAAGGGCA 60.613 55.000 1.65 1.65 36.97 5.36
2490 10531 0.323725 TCATGCTCCAAAGGAAGGGC 60.324 55.000 0.00 0.00 0.00 5.19
2491 10532 2.429610 CAATCATGCTCCAAAGGAAGGG 59.570 50.000 0.00 0.00 0.00 3.95
2492 10533 3.359033 TCAATCATGCTCCAAAGGAAGG 58.641 45.455 0.00 0.00 0.00 3.46
2493 10534 3.181489 GCTCAATCATGCTCCAAAGGAAG 60.181 47.826 0.00 0.00 0.00 3.46
2494 10535 2.756760 GCTCAATCATGCTCCAAAGGAA 59.243 45.455 0.00 0.00 0.00 3.36
2495 10536 2.025605 AGCTCAATCATGCTCCAAAGGA 60.026 45.455 0.00 0.00 33.90 3.36
2496 10537 2.376109 AGCTCAATCATGCTCCAAAGG 58.624 47.619 0.00 0.00 33.90 3.11
2497 10538 5.125097 AGTTAAGCTCAATCATGCTCCAAAG 59.875 40.000 0.00 0.00 38.75 2.77
2502 10543 3.626670 AGCAGTTAAGCTCAATCATGCTC 59.373 43.478 2.07 0.00 42.18 4.26
2553 10595 7.973388 TCACAAAATTCAACCAAGTTCTGTAAG 59.027 33.333 0.00 0.00 0.00 2.34
2600 10643 2.667473 ACGAATTGAGAACCCGGTAG 57.333 50.000 0.00 0.00 0.00 3.18
2627 10670 6.873076 GTGATCAGGGTTTAATGAAATTGCAA 59.127 34.615 0.00 0.00 36.99 4.08
2771 10857 5.967674 CAGTTTCACTTAAAGTTGCACTCTG 59.032 40.000 0.00 0.00 0.00 3.35
2774 10860 5.414454 TGACAGTTTCACTTAAAGTTGCACT 59.586 36.000 0.00 0.00 0.00 4.40
2835 11251 2.813754 TGTCCAGCAAGCTGTTTATCAC 59.186 45.455 19.60 7.63 42.15 3.06
2850 11266 4.319766 GCAATTGTGTTGAGTACTGTCCAG 60.320 45.833 0.00 0.00 0.00 3.86
2936 11892 4.463891 ACAAGCGGATTGGAGATTTGAAAT 59.536 37.500 11.05 0.00 43.68 2.17
2962 11918 1.076332 AAGCTCACGCCGTTACATTC 58.924 50.000 0.00 0.00 36.60 2.67
2970 11926 2.969806 ATTGCACAAGCTCACGCCG 61.970 57.895 0.00 0.00 42.74 6.46
2973 11929 0.728129 CTGCATTGCACAAGCTCACG 60.728 55.000 7.38 0.00 42.74 4.35
2978 11934 2.025418 GTGGCTGCATTGCACAAGC 61.025 57.895 7.38 9.96 42.57 4.01
3106 12063 1.411394 CGCGACGAACAAGGAGTTTA 58.589 50.000 0.00 0.00 41.51 2.01
3131 12175 2.045242 ACGCCCTCTCGAGCTACA 60.045 61.111 7.81 0.00 0.00 2.74
3170 12214 1.305046 CCTCGACACCCTGGTACCT 60.305 63.158 14.36 0.00 0.00 3.08
3239 12284 1.004745 ACCAGCTATCACAACCAAGGG 59.995 52.381 0.00 0.00 0.00 3.95
3245 12290 3.876274 TCTGAGACCAGCTATCACAAC 57.124 47.619 0.00 0.00 40.20 3.32
3257 12307 4.278975 ACTCACAAAAGGATCTGAGACC 57.721 45.455 12.81 0.00 35.19 3.85
3275 12521 3.057033 AGCACATCAGGCAAAATGAACTC 60.057 43.478 1.50 0.00 0.00 3.01
3282 12532 0.032403 GCACAGCACATCAGGCAAAA 59.968 50.000 0.00 0.00 0.00 2.44
3296 12546 2.166254 ACAAACCAAAAGACCAGCACAG 59.834 45.455 0.00 0.00 0.00 3.66
3320 12570 0.678048 GCTCCGCAATCCCAACTCTT 60.678 55.000 0.00 0.00 0.00 2.85
3321 12571 1.078143 GCTCCGCAATCCCAACTCT 60.078 57.895 0.00 0.00 0.00 3.24
3322 12572 0.678048 AAGCTCCGCAATCCCAACTC 60.678 55.000 0.00 0.00 0.00 3.01
3323 12573 0.251341 AAAGCTCCGCAATCCCAACT 60.251 50.000 0.00 0.00 0.00 3.16
3324 12574 0.171231 GAAAGCTCCGCAATCCCAAC 59.829 55.000 0.00 0.00 0.00 3.77
3325 12575 0.251121 TGAAAGCTCCGCAATCCCAA 60.251 50.000 0.00 0.00 0.00 4.12
3463 14385 7.932335 ACATTACAAATTCGGTCAAACTGTAA 58.068 30.769 0.00 0.00 33.17 2.41
3465 14387 6.385649 ACATTACAAATTCGGTCAAACTGT 57.614 33.333 0.00 0.00 0.00 3.55
3466 14388 6.915300 TCAACATTACAAATTCGGTCAAACTG 59.085 34.615 0.00 0.00 0.00 3.16
3467 14389 7.033530 TCAACATTACAAATTCGGTCAAACT 57.966 32.000 0.00 0.00 0.00 2.66
3564 14493 7.139896 TGTTCACAATACCACATCAATGTAC 57.860 36.000 0.00 0.00 39.39 2.90
3611 14548 9.173939 CACAGTTTATGAAGAAAGCAAGTAAAG 57.826 33.333 0.00 0.00 0.00 1.85
3616 14785 5.522456 TGCACAGTTTATGAAGAAAGCAAG 58.478 37.500 0.00 0.00 0.00 4.01
3619 14788 6.385033 AGATTGCACAGTTTATGAAGAAAGC 58.615 36.000 0.00 0.00 0.00 3.51
3650 14851 1.073199 AGTCCCGCCCTTTTCTGTG 59.927 57.895 0.00 0.00 0.00 3.66
3663 14866 2.162681 CCCAACATCAAGTTCAGTCCC 58.837 52.381 0.00 0.00 38.74 4.46
3664 14867 3.140325 TCCCAACATCAAGTTCAGTCC 57.860 47.619 0.00 0.00 38.74 3.85
3681 14884 1.447314 CTGCCGTCGGTTACTTCCC 60.447 63.158 13.94 0.00 0.00 3.97
3682 14885 0.527565 TACTGCCGTCGGTTACTTCC 59.472 55.000 13.94 0.00 33.08 3.46
3696 14937 9.188588 CATATTGGATGAATTTCATGTTACTGC 57.811 33.333 16.41 0.62 37.20 4.40
3709 14950 6.936335 TGTACTCATTCGCATATTGGATGAAT 59.064 34.615 0.00 0.00 0.00 2.57
3723 14964 4.682787 TGGAGTTGCTATGTACTCATTCG 58.317 43.478 0.00 0.00 41.99 3.34
3763 15004 6.995686 ACTTGTACCACTTGATGTCACAAATA 59.004 34.615 0.00 0.00 32.61 1.40
3770 15011 4.142816 GCATGACTTGTACCACTTGATGTC 60.143 45.833 0.00 0.00 0.00 3.06
3780 15021 1.003118 TCCTGTGGCATGACTTGTACC 59.997 52.381 0.00 0.00 0.00 3.34
3781 15022 2.472695 TCCTGTGGCATGACTTGTAC 57.527 50.000 0.00 0.00 0.00 2.90
3782 15023 3.500448 TTTCCTGTGGCATGACTTGTA 57.500 42.857 0.00 0.00 0.00 2.41
3963 15787 7.026631 TGCTACTGATACAAACCATATTTGC 57.973 36.000 0.00 0.00 32.93 3.68
4017 15844 5.627172 TCTCTTATTTCATTTTGAACCGCG 58.373 37.500 0.00 0.00 35.89 6.46
4030 15857 6.187125 TGCTGCACTTCATTCTCTTATTTC 57.813 37.500 0.00 0.00 0.00 2.17
4039 15872 3.128242 ACAATAGCTGCTGCACTTCATTC 59.872 43.478 18.42 0.00 42.74 2.67
4047 15880 2.487762 GGTAACAACAATAGCTGCTGCA 59.512 45.455 18.42 0.88 42.74 4.41
4051 15964 5.793457 CGTTTAAGGTAACAACAATAGCTGC 59.207 40.000 0.00 0.00 41.41 5.25
4074 15987 5.349061 ACCCCTAATTTACAGTTACTCCG 57.651 43.478 0.00 0.00 0.00 4.63
4080 15993 9.054580 AGATAACAGTACCCCTAATTTACAGTT 57.945 33.333 0.00 0.00 32.30 3.16
4081 15994 8.619683 AGATAACAGTACCCCTAATTTACAGT 57.380 34.615 0.00 0.00 0.00 3.55
4082 15995 9.543783 GAAGATAACAGTACCCCTAATTTACAG 57.456 37.037 0.00 0.00 0.00 2.74
4083 15996 9.275572 AGAAGATAACAGTACCCCTAATTTACA 57.724 33.333 0.00 0.00 0.00 2.41
4086 15999 9.503369 AGTAGAAGATAACAGTACCCCTAATTT 57.497 33.333 0.00 0.00 0.00 1.82
4089 16002 8.785859 ACTAGTAGAAGATAACAGTACCCCTAA 58.214 37.037 3.59 0.00 0.00 2.69
4092 16005 9.585369 AATACTAGTAGAAGATAACAGTACCCC 57.415 37.037 8.85 0.00 0.00 4.95
4105 16018 8.821894 GCTGAAAACCATCAATACTAGTAGAAG 58.178 37.037 8.85 1.11 0.00 2.85
4106 16019 8.318412 TGCTGAAAACCATCAATACTAGTAGAA 58.682 33.333 8.85 0.00 0.00 2.10
4108 16021 7.549134 TGTGCTGAAAACCATCAATACTAGTAG 59.451 37.037 8.85 0.00 0.00 2.57
4110 16023 6.237901 TGTGCTGAAAACCATCAATACTAGT 58.762 36.000 0.00 0.00 0.00 2.57
4111 16024 6.741992 TGTGCTGAAAACCATCAATACTAG 57.258 37.500 0.00 0.00 0.00 2.57
4112 16025 7.701539 AATGTGCTGAAAACCATCAATACTA 57.298 32.000 0.00 0.00 0.00 1.82
4113 16026 6.594788 AATGTGCTGAAAACCATCAATACT 57.405 33.333 0.00 0.00 0.00 2.12
4114 16027 6.646240 ACAAATGTGCTGAAAACCATCAATAC 59.354 34.615 0.00 0.00 0.00 1.89
4115 16028 6.757237 ACAAATGTGCTGAAAACCATCAATA 58.243 32.000 0.00 0.00 0.00 1.90
4117 16030 5.021033 ACAAATGTGCTGAAAACCATCAA 57.979 34.783 0.00 0.00 0.00 2.57
4118 16031 4.669206 ACAAATGTGCTGAAAACCATCA 57.331 36.364 0.00 0.00 0.00 3.07
4120 16033 5.723295 GGATACAAATGTGCTGAAAACCAT 58.277 37.500 0.00 0.00 0.00 3.55
4121 16034 5.132897 GGATACAAATGTGCTGAAAACCA 57.867 39.130 0.00 0.00 0.00 3.67
4136 16049 8.698973 TGAGTTTTTACTCCATTTGGATACAA 57.301 30.769 0.00 0.00 44.83 2.41
4137 16050 8.698973 TTGAGTTTTTACTCCATTTGGATACA 57.301 30.769 0.00 0.00 44.46 2.29
4138 16051 9.406828 GTTTGAGTTTTTACTCCATTTGGATAC 57.593 33.333 0.00 0.00 44.46 2.24
4139 16052 9.362151 AGTTTGAGTTTTTACTCCATTTGGATA 57.638 29.630 0.00 0.00 44.46 2.59
4140 16053 8.143835 CAGTTTGAGTTTTTACTCCATTTGGAT 58.856 33.333 0.00 0.00 44.46 3.41
4141 16054 7.417342 CCAGTTTGAGTTTTTACTCCATTTGGA 60.417 37.037 0.00 0.00 43.08 3.53
4142 16055 6.701400 CCAGTTTGAGTTTTTACTCCATTTGG 59.299 38.462 3.10 0.00 35.97 3.28
4143 16056 7.488322 TCCAGTTTGAGTTTTTACTCCATTTG 58.512 34.615 3.10 0.00 35.97 2.32
4146 16059 7.839680 AATCCAGTTTGAGTTTTTACTCCAT 57.160 32.000 3.10 0.00 35.97 3.41
4147 16060 7.468084 CGAAATCCAGTTTGAGTTTTTACTCCA 60.468 37.037 3.10 0.00 35.97 3.86
4148 16061 6.856426 CGAAATCCAGTTTGAGTTTTTACTCC 59.144 38.462 3.10 0.00 35.97 3.85
4149 16062 6.856426 CCGAAATCCAGTTTGAGTTTTTACTC 59.144 38.462 0.00 0.00 37.27 2.59
4150 16063 6.734871 GCCGAAATCCAGTTTGAGTTTTTACT 60.735 38.462 0.00 0.00 0.00 2.24
4151 16064 5.401376 GCCGAAATCCAGTTTGAGTTTTTAC 59.599 40.000 0.00 0.00 0.00 2.01
4152 16065 5.300792 AGCCGAAATCCAGTTTGAGTTTTTA 59.699 36.000 0.00 0.00 0.00 1.52
4154 16067 3.636764 AGCCGAAATCCAGTTTGAGTTTT 59.363 39.130 0.00 0.00 0.00 2.43
4155 16068 3.222603 AGCCGAAATCCAGTTTGAGTTT 58.777 40.909 0.00 0.00 0.00 2.66
4157 16070 2.568623 AGCCGAAATCCAGTTTGAGT 57.431 45.000 0.00 0.00 0.00 3.41
4159 16072 4.215399 CAGTAAAGCCGAAATCCAGTTTGA 59.785 41.667 0.00 0.00 0.00 2.69
4160 16073 4.215399 TCAGTAAAGCCGAAATCCAGTTTG 59.785 41.667 0.00 0.00 0.00 2.93
4162 16075 4.015872 TCAGTAAAGCCGAAATCCAGTT 57.984 40.909 0.00 0.00 0.00 3.16
4163 16076 3.695830 TCAGTAAAGCCGAAATCCAGT 57.304 42.857 0.00 0.00 0.00 4.00
4165 16078 3.745799 TGTTCAGTAAAGCCGAAATCCA 58.254 40.909 0.00 0.00 0.00 3.41
4166 16079 3.751698 ACTGTTCAGTAAAGCCGAAATCC 59.248 43.478 3.47 0.00 0.00 3.01
4167 16080 4.213482 ACACTGTTCAGTAAAGCCGAAATC 59.787 41.667 5.11 0.00 0.00 2.17
4168 16081 4.134563 ACACTGTTCAGTAAAGCCGAAAT 58.865 39.130 5.11 0.00 0.00 2.17
4169 16082 3.537580 ACACTGTTCAGTAAAGCCGAAA 58.462 40.909 5.11 0.00 0.00 3.46
4171 16084 2.869801 CAACACTGTTCAGTAAAGCCGA 59.130 45.455 5.11 0.00 0.00 5.54
4172 16085 2.869801 TCAACACTGTTCAGTAAAGCCG 59.130 45.455 5.11 0.00 0.00 5.52
4173 16086 4.893424 TTCAACACTGTTCAGTAAAGCC 57.107 40.909 5.11 0.00 0.00 4.35
4174 16087 6.856426 GGTAATTCAACACTGTTCAGTAAAGC 59.144 38.462 5.11 0.00 0.00 3.51
4175 16088 7.069569 CGGTAATTCAACACTGTTCAGTAAAG 58.930 38.462 5.11 0.00 0.00 1.85
4179 16092 4.448210 ACGGTAATTCAACACTGTTCAGT 58.552 39.130 0.00 0.00 29.94 3.41
4182 16095 7.412063 AGTTTTACGGTAATTCAACACTGTTC 58.588 34.615 13.47 0.00 35.84 3.18
4183 16096 7.324354 AGTTTTACGGTAATTCAACACTGTT 57.676 32.000 13.47 0.00 35.84 3.16
4184 16097 6.017687 GGAGTTTTACGGTAATTCAACACTGT 60.018 38.462 13.47 0.00 37.92 3.55
4185 16098 6.204108 AGGAGTTTTACGGTAATTCAACACTG 59.796 38.462 13.47 0.00 0.00 3.66
4186 16099 6.293698 AGGAGTTTTACGGTAATTCAACACT 58.706 36.000 13.47 9.43 0.00 3.55
4187 16100 6.549912 AGGAGTTTTACGGTAATTCAACAC 57.450 37.500 13.47 8.76 0.00 3.32
4188 16101 7.571080 AAAGGAGTTTTACGGTAATTCAACA 57.429 32.000 13.47 0.00 0.00 3.33
4189 16102 9.764870 GATAAAGGAGTTTTACGGTAATTCAAC 57.235 33.333 0.73 3.92 34.22 3.18
4190 16103 9.729281 AGATAAAGGAGTTTTACGGTAATTCAA 57.271 29.630 0.73 0.00 34.22 2.69
4191 16104 9.729281 AAGATAAAGGAGTTTTACGGTAATTCA 57.271 29.630 0.73 0.00 34.22 2.57
4195 16108 9.783081 AGAAAAGATAAAGGAGTTTTACGGTAA 57.217 29.630 0.00 0.00 34.22 2.85
4196 16109 9.428097 GAGAAAAGATAAAGGAGTTTTACGGTA 57.572 33.333 0.00 0.00 34.22 4.02
4197 16110 8.155510 AGAGAAAAGATAAAGGAGTTTTACGGT 58.844 33.333 0.00 0.00 34.22 4.83
4198 16111 8.549338 AGAGAAAAGATAAAGGAGTTTTACGG 57.451 34.615 0.00 0.00 34.22 4.02
4213 16126 9.015367 GGGACTAGCTTTTAAAAGAGAAAAGAT 57.985 33.333 28.11 6.39 43.57 2.40
4214 16127 8.218488 AGGGACTAGCTTTTAAAAGAGAAAAGA 58.782 33.333 28.11 6.44 40.61 2.52
4215 16128 8.397575 AGGGACTAGCTTTTAAAAGAGAAAAG 57.602 34.615 28.11 18.11 40.88 2.27
4216 16129 7.447545 GGAGGGACTAGCTTTTAAAAGAGAAAA 59.552 37.037 28.11 9.28 41.55 2.29
4217 16130 6.940867 GGAGGGACTAGCTTTTAAAAGAGAAA 59.059 38.462 28.11 10.79 41.55 2.52
4218 16131 6.473758 GGAGGGACTAGCTTTTAAAAGAGAA 58.526 40.000 28.11 12.92 41.55 2.87
4219 16132 5.337330 CGGAGGGACTAGCTTTTAAAAGAGA 60.337 44.000 28.11 14.96 41.55 3.10
4220 16133 4.870991 CGGAGGGACTAGCTTTTAAAAGAG 59.129 45.833 28.11 19.81 41.55 2.85
4221 16134 4.285260 ACGGAGGGACTAGCTTTTAAAAGA 59.715 41.667 28.11 10.12 41.55 2.52
4222 16135 4.576879 ACGGAGGGACTAGCTTTTAAAAG 58.423 43.478 21.32 21.32 41.55 2.27
4224 16137 4.628963 AACGGAGGGACTAGCTTTTAAA 57.371 40.909 0.00 0.00 41.55 1.52
4228 16141 3.836562 TCTAAAACGGAGGGACTAGCTTT 59.163 43.478 0.00 0.00 41.55 3.51
4235 16148 5.984323 GTCATCTATTCTAAAACGGAGGGAC 59.016 44.000 0.00 0.00 0.00 4.46
4245 16158 9.667107 CTACAAAGTTGGGTCATCTATTCTAAA 57.333 33.333 0.00 0.00 0.00 1.85
4246 16159 8.822805 ACTACAAAGTTGGGTCATCTATTCTAA 58.177 33.333 0.00 0.00 29.00 2.10
4247 16160 8.375493 ACTACAAAGTTGGGTCATCTATTCTA 57.625 34.615 0.00 0.00 29.00 2.10
4249 16162 7.923414 AACTACAAAGTTGGGTCATCTATTC 57.077 36.000 0.00 0.00 44.40 1.75
4263 16176 7.176690 CCAAAATAGATGACCCAACTACAAAGT 59.823 37.037 0.00 0.00 37.65 2.66
4264 16177 7.393234 TCCAAAATAGATGACCCAACTACAAAG 59.607 37.037 0.00 0.00 0.00 2.77
4267 16180 6.381498 TCCAAAATAGATGACCCAACTACA 57.619 37.500 0.00 0.00 0.00 2.74
4268 16181 5.823045 CCTCCAAAATAGATGACCCAACTAC 59.177 44.000 0.00 0.00 0.00 2.73
4269 16182 5.104109 CCCTCCAAAATAGATGACCCAACTA 60.104 44.000 0.00 0.00 0.00 2.24
4271 16184 3.954258 CCCTCCAAAATAGATGACCCAAC 59.046 47.826 0.00 0.00 0.00 3.77
4273 16186 3.459598 CTCCCTCCAAAATAGATGACCCA 59.540 47.826 0.00 0.00 0.00 4.51
4275 16188 4.779993 ACTCCCTCCAAAATAGATGACC 57.220 45.455 0.00 0.00 0.00 4.02
4276 16189 6.325286 AGTCTACTCCCTCCAAAATAGATGAC 59.675 42.308 0.00 0.00 0.00 3.06
4277 16190 6.325028 CAGTCTACTCCCTCCAAAATAGATGA 59.675 42.308 0.00 0.00 0.00 2.92
4278 16191 6.520272 CAGTCTACTCCCTCCAAAATAGATG 58.480 44.000 0.00 0.00 0.00 2.90
4279 16192 5.071115 GCAGTCTACTCCCTCCAAAATAGAT 59.929 44.000 0.00 0.00 0.00 1.98
4280 16193 4.406003 GCAGTCTACTCCCTCCAAAATAGA 59.594 45.833 0.00 0.00 0.00 1.98
4281 16194 4.162320 TGCAGTCTACTCCCTCCAAAATAG 59.838 45.833 0.00 0.00 0.00 1.73
4282 16195 4.101114 TGCAGTCTACTCCCTCCAAAATA 58.899 43.478 0.00 0.00 0.00 1.40
4283 16196 2.912956 TGCAGTCTACTCCCTCCAAAAT 59.087 45.455 0.00 0.00 0.00 1.82
4284 16197 2.334977 TGCAGTCTACTCCCTCCAAAA 58.665 47.619 0.00 0.00 0.00 2.44
4285 16198 2.024176 TGCAGTCTACTCCCTCCAAA 57.976 50.000 0.00 0.00 0.00 3.28
4286 16199 2.024176 TTGCAGTCTACTCCCTCCAA 57.976 50.000 0.00 0.00 0.00 3.53
4287 16200 1.833630 CATTGCAGTCTACTCCCTCCA 59.166 52.381 0.00 0.00 0.00 3.86
4288 16201 2.111384 TCATTGCAGTCTACTCCCTCC 58.889 52.381 0.00 0.00 0.00 4.30
4289 16202 3.640967 AGATCATTGCAGTCTACTCCCTC 59.359 47.826 0.00 0.00 0.00 4.30
4292 16205 4.662468 TCAGATCATTGCAGTCTACTCC 57.338 45.455 0.00 0.00 0.00 3.85
4304 16217 7.982252 ACCTAATGGACATGTATCAGATCATT 58.018 34.615 0.00 3.86 37.04 2.57
4305 16218 7.565190 ACCTAATGGACATGTATCAGATCAT 57.435 36.000 0.00 0.00 37.04 2.45
4334 16253 1.303888 CCAGCAGCAGACCATTGGT 60.304 57.895 8.42 8.42 39.44 3.67
4336 16255 0.524862 GTTCCAGCAGCAGACCATTG 59.475 55.000 0.00 0.00 0.00 2.82
4346 16265 6.183360 GCACTACTAATTTACAGTTCCAGCAG 60.183 42.308 0.00 0.00 0.00 4.24
4348 16267 5.875359 AGCACTACTAATTTACAGTTCCAGC 59.125 40.000 0.00 0.00 0.00 4.85
4365 16284 6.019801 CCGTCAACACAAGATAATAGCACTAC 60.020 42.308 0.00 0.00 0.00 2.73
4366 16285 6.040247 CCGTCAACACAAGATAATAGCACTA 58.960 40.000 0.00 0.00 0.00 2.74
4367 16286 4.870426 CCGTCAACACAAGATAATAGCACT 59.130 41.667 0.00 0.00 0.00 4.40
4368 16287 4.630069 ACCGTCAACACAAGATAATAGCAC 59.370 41.667 0.00 0.00 0.00 4.40
4369 16288 4.827692 ACCGTCAACACAAGATAATAGCA 58.172 39.130 0.00 0.00 0.00 3.49
4370 16289 5.796350 AACCGTCAACACAAGATAATAGC 57.204 39.130 0.00 0.00 0.00 2.97
4383 16302 1.008329 TTGACACCGAAACCGTCAAC 58.992 50.000 0.00 0.00 42.95 3.18
4388 16307 0.591170 AGCAATTGACACCGAAACCG 59.409 50.000 10.34 0.00 0.00 4.44
4395 16314 4.151157 GCTGAAATTGAAGCAATTGACACC 59.849 41.667 10.34 0.00 42.32 4.16
4411 16330 5.590530 TTTGGTTACAAGTGTGCTGAAAT 57.409 34.783 0.00 0.00 37.97 2.17
4414 16333 3.317711 CCATTTGGTTACAAGTGTGCTGA 59.682 43.478 0.00 0.00 41.25 4.26
4422 16341 6.204108 ACGTCTTTACTCCATTTGGTTACAAG 59.796 38.462 0.00 0.00 37.97 3.16
4428 16347 5.471116 GGTAAACGTCTTTACTCCATTTGGT 59.529 40.000 9.39 0.00 41.10 3.67
4455 16378 4.452825 CTGAGATCTAGGACCGTTCAGTA 58.547 47.826 0.00 0.00 0.00 2.74
4458 16381 2.656002 CCTGAGATCTAGGACCGTTCA 58.344 52.381 10.96 0.00 37.52 3.18
4463 16386 3.033659 TCAACCCTGAGATCTAGGACC 57.966 52.381 15.80 0.00 37.52 4.46
4486 16409 6.532657 GCATAAATGAGGGAATTTTCACAGTG 59.467 38.462 0.00 0.00 31.44 3.66
4496 16420 6.371595 TTGTTTTGGCATAAATGAGGGAAT 57.628 33.333 0.00 0.00 0.00 3.01
4533 16457 2.575993 CGTCAGAGACCTGCCTGG 59.424 66.667 0.00 0.00 40.20 4.45
4537 16461 2.680352 TCCCCGTCAGAGACCTGC 60.680 66.667 0.00 0.00 40.20 4.85
4615 16539 0.031994 CCGTGTTTCCCTTTGCCTTG 59.968 55.000 0.00 0.00 0.00 3.61
4623 16547 2.032681 GAGCTGCCGTGTTTCCCT 59.967 61.111 0.00 0.00 0.00 4.20
4648 16572 4.081917 ACTTTACAGTTGGTTGGTTGGTTG 60.082 41.667 0.00 0.00 0.00 3.77
4649 16573 4.090819 ACTTTACAGTTGGTTGGTTGGTT 58.909 39.130 0.00 0.00 0.00 3.67
4650 16574 3.697542 GACTTTACAGTTGGTTGGTTGGT 59.302 43.478 0.00 0.00 31.22 3.67
4651 16575 3.067601 GGACTTTACAGTTGGTTGGTTGG 59.932 47.826 0.00 0.00 31.22 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.