Multiple sequence alignment - TraesCS2B01G583800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G583800 chr2B 100.000 3575 0 0 1 3575 771042056 771045630 0.000000e+00 6602.0
1 TraesCS2B01G583800 chr2B 81.298 262 31 13 1767 2010 489850328 489850589 2.820000e-46 196.0
2 TraesCS2B01G583800 chr2B 89.051 137 15 0 1218 1354 489849194 489849330 1.710000e-38 171.0
3 TraesCS2B01G583800 chr2B 80.153 131 14 9 1763 1888 663899184 663899307 1.770000e-13 87.9
4 TraesCS2B01G583800 chr2D 93.533 1237 61 8 293 1519 627973130 627974357 0.000000e+00 1823.0
5 TraesCS2B01G583800 chr2D 88.124 1061 68 16 1529 2566 627974401 627975426 0.000000e+00 1208.0
6 TraesCS2B01G583800 chr2D 86.433 457 43 10 2727 3179 627975710 627976151 1.930000e-132 483.0
7 TraesCS2B01G583800 chr2D 88.621 290 20 13 1 280 627972797 627973083 1.230000e-89 340.0
8 TraesCS2B01G583800 chr2D 80.919 283 36 13 1767 2031 417626495 417626777 1.300000e-49 207.0
9 TraesCS2B01G583800 chr2D 89.209 139 15 0 1216 1354 417625368 417625506 1.320000e-39 174.0
10 TraesCS2B01G583800 chr2D 80.620 129 17 7 1763 1888 556365918 556366041 3.800000e-15 93.5
11 TraesCS2B01G583800 chr2D 80.000 125 22 3 1768 1891 556350969 556351091 4.920000e-14 89.8
12 TraesCS2B01G583800 chr2D 79.699 133 14 10 1761 1888 556619570 556619694 2.290000e-12 84.2
13 TraesCS2B01G583800 chr2D 89.231 65 5 2 3285 3348 627977166 627977229 2.960000e-11 80.5
14 TraesCS2B01G583800 chr2D 96.774 31 1 0 3315 3345 627975999 627976029 6.000000e-03 52.8
15 TraesCS2B01G583800 chr2A 92.016 1240 71 11 293 1519 758508839 758510063 0.000000e+00 1716.0
16 TraesCS2B01G583800 chr2A 84.460 991 78 37 1588 2566 758510112 758511038 0.000000e+00 907.0
17 TraesCS2B01G583800 chr2A 86.972 284 24 12 7 280 758508505 758508785 1.250000e-79 307.0
18 TraesCS2B01G583800 chr2A 88.333 180 13 4 2736 2915 758511704 758511875 3.620000e-50 209.0
19 TraesCS2B01G583800 chr2A 79.371 286 38 15 1767 2031 572486445 572486160 7.880000e-42 182.0
20 TraesCS2B01G583800 chr2A 89.130 138 15 0 1216 1353 572487554 572487417 4.750000e-39 172.0
21 TraesCS2B01G583800 chr2A 85.811 148 12 4 3427 3568 758512352 758512496 8.000000e-32 148.0
22 TraesCS2B01G583800 chr2A 96.875 32 1 0 3318 3349 758511963 758511994 2.000000e-03 54.7
23 TraesCS2B01G583800 chr6D 84.426 122 17 2 1230 1350 409288167 409288287 6.270000e-23 119.0
24 TraesCS2B01G583800 chr6B 87.255 102 11 2 1230 1330 613610396 613610496 8.110000e-22 115.0
25 TraesCS2B01G583800 chr6B 86.275 102 12 2 1230 1330 614127666 614127766 3.770000e-20 110.0
26 TraesCS2B01G583800 chr6A 86.275 102 12 2 1230 1330 554787529 554787629 3.770000e-20 110.0
27 TraesCS2B01G583800 chr7A 100.000 28 0 0 3176 3203 198617363 198617336 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G583800 chr2B 771042056 771045630 3574 False 6602.00 6602 100.000000 1 3575 1 chr2B.!!$F2 3574
1 TraesCS2B01G583800 chr2D 627972797 627977229 4432 False 664.55 1823 90.452667 1 3348 6 chr2D.!!$F5 3347
2 TraesCS2B01G583800 chr2A 758508505 758512496 3991 False 556.95 1716 89.077833 7 3568 6 chr2A.!!$F1 3561

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
990 1050 0.250467 AGGCAGCAGCATATTACGGG 60.25 55.0 2.65 0.0 44.61 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2782 3454 0.24691 TCCGTGCGCCATTAACTACA 59.753 50.0 4.18 0.0 0.0 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 7.507829 TGATCATTTTGTGTTCTTCCCATTTT 58.492 30.769 0.00 0.00 0.00 1.82
34 35 3.320610 TGTGTTCTTCCCATTTTCCCA 57.679 42.857 0.00 0.00 0.00 4.37
133 134 4.475016 GCCCTAATGGTCCCATATCATACT 59.525 45.833 0.00 0.00 35.31 2.12
136 137 7.565680 CCCTAATGGTCCCATATCATACTAAC 58.434 42.308 0.00 0.00 35.31 2.34
140 141 6.169557 TGGTCCCATATCATACTAACACAC 57.830 41.667 0.00 0.00 0.00 3.82
156 157 2.103432 ACACACGTTTATCCAGGTGTCA 59.897 45.455 0.00 0.00 42.47 3.58
162 163 5.181245 CACGTTTATCCAGGTGTCATCTTTT 59.819 40.000 0.00 0.00 0.00 2.27
199 200 3.922171 AAGGCTTCCAGTATCTTCCTG 57.078 47.619 0.00 0.00 0.00 3.86
212 215 5.879223 AGTATCTTCCTGCATCTCACAAAAG 59.121 40.000 0.00 0.00 0.00 2.27
213 216 2.816087 TCTTCCTGCATCTCACAAAAGC 59.184 45.455 0.00 0.00 0.00 3.51
214 217 2.275134 TCCTGCATCTCACAAAAGCA 57.725 45.000 0.00 0.00 0.00 3.91
216 219 3.159472 TCCTGCATCTCACAAAAGCATT 58.841 40.909 0.00 0.00 34.35 3.56
218 222 4.766373 TCCTGCATCTCACAAAAGCATTAA 59.234 37.500 0.00 0.00 34.35 1.40
224 228 8.497554 TGCATCTCACAAAAGCATTAATTTTTC 58.502 29.630 0.00 0.00 0.00 2.29
247 251 9.871238 TTTCTAGTTCATTAGTTTATTCTCGCT 57.129 29.630 0.00 0.00 0.00 4.93
249 253 9.517609 TCTAGTTCATTAGTTTATTCTCGCTTC 57.482 33.333 0.00 0.00 0.00 3.86
250 254 9.302345 CTAGTTCATTAGTTTATTCTCGCTTCA 57.698 33.333 0.00 0.00 0.00 3.02
317 369 2.591923 TGGTGCCATTACTGAAAGCAA 58.408 42.857 0.00 0.00 37.60 3.91
322 374 3.888323 TGCCATTACTGAAAGCAACTTCA 59.112 39.130 0.00 0.00 37.60 3.02
331 383 4.885413 TGAAAGCAACTTCAAATCCATGG 58.115 39.130 4.97 4.97 32.39 3.66
333 385 4.796038 AAGCAACTTCAAATCCATGGAG 57.204 40.909 21.33 6.88 31.79 3.86
334 386 4.038271 AGCAACTTCAAATCCATGGAGA 57.962 40.909 21.33 9.41 30.00 3.71
335 387 4.015084 AGCAACTTCAAATCCATGGAGAG 58.985 43.478 21.33 12.17 30.00 3.20
347 399 2.237143 CCATGGAGAGCTTCACCAGTAA 59.763 50.000 5.56 0.00 40.37 2.24
348 400 3.307691 CCATGGAGAGCTTCACCAGTAAA 60.308 47.826 5.56 0.00 40.37 2.01
349 401 4.326826 CATGGAGAGCTTCACCAGTAAAA 58.673 43.478 11.79 0.00 40.37 1.52
372 424 1.671845 ACGGCGTTTGCTAAAGAAACA 59.328 42.857 6.77 0.00 42.25 2.83
373 425 2.097791 ACGGCGTTTGCTAAAGAAACAA 59.902 40.909 6.77 0.00 42.25 2.83
374 426 3.109619 CGGCGTTTGCTAAAGAAACAAA 58.890 40.909 0.00 0.00 42.25 2.83
376 428 3.244345 GGCGTTTGCTAAAGAAACAAACC 59.756 43.478 11.08 5.44 46.55 3.27
379 431 4.738252 CGTTTGCTAAAGAAACAAACCCTC 59.262 41.667 11.08 0.00 46.55 4.30
408 465 3.565482 CAGCTGTACACCAAACAGTTCAT 59.435 43.478 5.25 0.00 45.01 2.57
416 473 5.380043 ACACCAAACAGTTCATTCTGAGAT 58.620 37.500 0.65 0.00 38.63 2.75
621 681 2.173519 CCTTACGGTCTCACCAACCTA 58.826 52.381 0.00 0.00 38.47 3.08
648 708 2.358932 GGTGTCATAGTAGAGGGGTCCA 60.359 54.545 0.00 0.00 0.00 4.02
649 709 3.371965 GTGTCATAGTAGAGGGGTCCAA 58.628 50.000 0.00 0.00 0.00 3.53
759 819 7.499232 ACTTGCTTGTTACTCTTACATTCAGTT 59.501 33.333 0.00 0.00 0.00 3.16
779 839 1.103803 GATCGGTGAGGAGCTGTACA 58.896 55.000 0.00 0.00 0.00 2.90
803 863 1.577328 CTTGCACCCAGTAACCTGCG 61.577 60.000 0.00 0.00 37.38 5.18
816 876 1.948635 CCTGCGCCAAAACCAAACG 60.949 57.895 4.18 0.00 0.00 3.60
891 951 7.840931 TCATACCTTCATATCGTGCTAATGAT 58.159 34.615 0.00 0.00 36.06 2.45
910 970 5.215252 TGATGTATAGCTCTAACTTGCCC 57.785 43.478 0.00 0.00 0.00 5.36
989 1049 1.597742 AAGGCAGCAGCATATTACGG 58.402 50.000 2.65 0.00 44.61 4.02
990 1050 0.250467 AGGCAGCAGCATATTACGGG 60.250 55.000 2.65 0.00 44.61 5.28
991 1051 1.576421 GCAGCAGCATATTACGGGC 59.424 57.895 0.00 0.00 41.58 6.13
1011 1071 0.319900 CTACTCCAATGGGGCGATCG 60.320 60.000 11.69 11.69 36.21 3.69
1013 1073 3.466791 CTCCAATGGGGCGATCGCT 62.467 63.158 36.25 16.84 41.60 4.93
1098 1158 1.227764 CCACATCGAGGAGCATGGG 60.228 63.158 3.06 0.00 0.00 4.00
1153 1213 3.807622 CGGTGAGTCTACAAAAGCTTGAA 59.192 43.478 0.00 0.00 36.33 2.69
1174 1234 0.911769 TTCATCCGGTTGCTGAGGAT 59.088 50.000 7.70 0.00 44.91 3.24
1190 1254 0.529992 GGATCAAAGGCGTCTACGGG 60.530 60.000 4.49 0.00 40.23 5.28
1272 1336 1.555075 GAGATGGACCAACTACCTGCA 59.445 52.381 3.91 0.00 0.00 4.41
1360 1424 0.466543 TCGGCAACAGGTGTGTAGTT 59.533 50.000 0.00 0.00 35.08 2.24
1368 1432 4.957759 ACAGGTGTGTAGTTGTTTTCAC 57.042 40.909 0.00 0.00 34.05 3.18
1376 1440 7.042523 GGTGTGTAGTTGTTTTCACGTATAGTT 60.043 37.037 0.00 0.00 34.08 2.24
1377 1441 8.330302 GTGTGTAGTTGTTTTCACGTATAGTTT 58.670 33.333 0.00 0.00 34.08 2.66
1435 1500 5.889289 ACTTAAGCTCCCTTCAGAGTAGTAG 59.111 44.000 1.29 0.00 36.20 2.57
1476 1541 4.025396 CGTCATCAATGTCTTACCTGCATC 60.025 45.833 0.00 0.00 0.00 3.91
1484 1549 4.724399 TGTCTTACCTGCATCCTTTTTCA 58.276 39.130 0.00 0.00 0.00 2.69
1562 1660 5.877012 CCATGTATATGCATTCCACTCCTAC 59.123 44.000 3.54 0.00 32.79 3.18
1563 1661 5.483685 TGTATATGCATTCCACTCCTACC 57.516 43.478 3.54 0.00 0.00 3.18
1582 1680 6.599244 TCCTACCACATCTGAAAGCAAAATAG 59.401 38.462 0.00 0.00 0.00 1.73
1589 1687 6.650807 ACATCTGAAAGCAAAATAGAAGACGA 59.349 34.615 0.00 0.00 0.00 4.20
1617 1715 4.991153 TGTAGTGTTGAATGCACCAAAA 57.009 36.364 5.09 0.00 37.56 2.44
1618 1716 5.528043 TGTAGTGTTGAATGCACCAAAAT 57.472 34.783 5.09 0.00 37.56 1.82
1619 1717 5.288015 TGTAGTGTTGAATGCACCAAAATG 58.712 37.500 5.09 0.00 37.56 2.32
1638 1736 5.940192 AATGTCAGCGTTTTCATTCTGTA 57.060 34.783 0.00 0.00 0.00 2.74
1696 1794 6.596497 AGAATAAAGAATTTTGGCTGGCATTG 59.404 34.615 4.22 0.00 40.09 2.82
1698 1796 3.323751 AGAATTTTGGCTGGCATTGTC 57.676 42.857 4.22 0.89 0.00 3.18
1700 1798 3.325716 AGAATTTTGGCTGGCATTGTCTT 59.674 39.130 4.22 0.00 0.00 3.01
1701 1799 3.775261 ATTTTGGCTGGCATTGTCTTT 57.225 38.095 4.22 0.00 0.00 2.52
1702 1800 3.557228 TTTTGGCTGGCATTGTCTTTT 57.443 38.095 4.22 0.00 0.00 2.27
1703 1801 3.557228 TTTGGCTGGCATTGTCTTTTT 57.443 38.095 4.22 0.00 0.00 1.94
1732 1830 6.321848 TGTCCAGCAATAATAATGCATGAG 57.678 37.500 0.00 0.00 46.22 2.90
1737 1835 7.884354 TCCAGCAATAATAATGCATGAGTATGA 59.116 33.333 4.77 0.00 46.22 2.15
1738 1836 8.683615 CCAGCAATAATAATGCATGAGTATGAT 58.316 33.333 4.77 0.00 46.22 2.45
1739 1837 9.717892 CAGCAATAATAATGCATGAGTATGATC 57.282 33.333 4.77 0.00 46.22 2.92
1740 1838 9.457436 AGCAATAATAATGCATGAGTATGATCA 57.543 29.630 4.77 0.00 46.22 2.92
1741 1839 9.717892 GCAATAATAATGCATGAGTATGATCAG 57.282 33.333 4.77 0.00 43.29 2.90
1744 1842 7.612668 AATAATGCATGAGTATGATCAGCTC 57.387 36.000 18.08 18.08 36.36 4.09
1750 1871 5.120519 GCATGAGTATGATCAGCTCTTAAGC 59.879 44.000 22.57 17.90 41.76 3.09
1769 1890 1.986882 CTTTGCTTCCTGGGACTGTT 58.013 50.000 0.00 0.00 0.00 3.16
1947 2068 4.845580 AGATCAGCCAAGGCCGCG 62.846 66.667 7.62 0.00 43.17 6.46
2053 2174 2.673523 CCTCCAGGCCAACCTCAG 59.326 66.667 5.01 0.00 46.34 3.35
2086 2207 1.747355 CAATAAACCTGCCAGAGCCTG 59.253 52.381 0.00 0.00 38.69 4.85
2181 2302 0.638746 CGCTGACGTTCATCGGTAAC 59.361 55.000 0.00 0.00 44.69 2.50
2190 2311 4.092383 ACGTTCATCGGTAACAATAACAGC 59.908 41.667 0.00 0.00 44.69 4.40
2208 2329 0.603975 GCGTCAGCCTTGGGATATCC 60.604 60.000 13.87 13.87 37.42 2.59
2239 2360 0.387367 CACGACGTGGAGGTTGAGAG 60.387 60.000 20.26 0.00 0.00 3.20
2268 2389 2.569134 GAGCGCGAAGAGGACAGT 59.431 61.111 12.10 0.00 0.00 3.55
2270 2391 3.482783 GCGCGAAGAGGACAGTGC 61.483 66.667 12.10 0.00 0.00 4.40
2276 2397 4.731612 AGAGGACAGTGCGCGCAG 62.732 66.667 37.44 26.50 0.00 5.18
2347 2468 1.063649 GAGCACATCATTGGCTGCG 59.936 57.895 0.00 0.00 38.15 5.18
2348 2469 2.103538 GCACATCATTGGCTGCGG 59.896 61.111 0.00 0.00 0.00 5.69
2349 2470 2.703798 GCACATCATTGGCTGCGGT 61.704 57.895 0.00 0.00 0.00 5.68
2369 2490 1.827399 GAGGAGCCGTGGTTCCAAGA 61.827 60.000 21.89 0.00 46.14 3.02
2370 2491 1.072505 GGAGCCGTGGTTCCAAGAA 59.927 57.895 16.06 0.00 43.69 2.52
2414 2535 4.731612 AGACGTGCTGCTCGCTGG 62.732 66.667 22.17 0.00 40.11 4.85
2417 2538 3.260483 CGTGCTGCTCGCTGGATC 61.260 66.667 11.29 0.00 40.11 3.36
2418 2539 2.894387 GTGCTGCTCGCTGGATCC 60.894 66.667 4.20 4.20 40.11 3.36
2419 2540 4.519437 TGCTGCTCGCTGGATCCG 62.519 66.667 7.39 3.14 40.11 4.18
2421 2542 3.842923 CTGCTCGCTGGATCCGGT 61.843 66.667 21.88 0.00 0.00 5.28
2422 2543 4.147449 TGCTCGCTGGATCCGGTG 62.147 66.667 25.72 25.72 0.00 4.94
2423 2544 4.148825 GCTCGCTGGATCCGGTGT 62.149 66.667 29.09 0.00 34.67 4.16
2424 2545 2.105128 CTCGCTGGATCCGGTGTC 59.895 66.667 29.09 9.95 34.67 3.67
2425 2546 3.758088 CTCGCTGGATCCGGTGTCG 62.758 68.421 29.09 20.33 34.67 4.35
2552 2676 1.976132 ATCCTCGGCATGGTGGTCAG 61.976 60.000 0.00 0.00 0.00 3.51
2561 2685 4.459089 GGTGGTCAGCTCGGAGCC 62.459 72.222 25.49 11.33 43.77 4.70
2576 3044 0.250081 GAGCCGCCATTTCTCTAGGG 60.250 60.000 0.00 0.00 0.00 3.53
2579 3047 4.464262 GCCATTTCTCTAGGGCGG 57.536 61.111 0.00 0.00 36.58 6.13
2580 3048 1.227973 GCCATTTCTCTAGGGCGGG 60.228 63.158 0.00 0.00 36.58 6.13
2582 3050 1.227973 CATTTCTCTAGGGCGGGGC 60.228 63.158 0.00 0.00 0.00 5.80
2583 3051 2.808206 ATTTCTCTAGGGCGGGGCG 61.808 63.158 0.00 0.00 0.00 6.13
2607 3075 3.973458 GGTCCCTCCCTTCTAGGC 58.027 66.667 0.00 0.00 32.73 3.93
2608 3076 1.315216 GGTCCCTCCCTTCTAGGCT 59.685 63.158 0.00 0.00 32.73 4.58
2609 3077 1.051556 GGTCCCTCCCTTCTAGGCTG 61.052 65.000 0.00 0.00 32.73 4.85
2610 3078 1.383248 TCCCTCCCTTCTAGGCTGC 60.383 63.158 0.00 0.00 32.73 5.25
2611 3079 1.690633 CCCTCCCTTCTAGGCTGCA 60.691 63.158 0.50 0.00 32.73 4.41
2612 3080 1.524482 CCTCCCTTCTAGGCTGCAC 59.476 63.158 0.50 0.00 32.73 4.57
2613 3081 1.267574 CCTCCCTTCTAGGCTGCACA 61.268 60.000 0.50 0.00 32.73 4.57
2614 3082 0.835941 CTCCCTTCTAGGCTGCACAT 59.164 55.000 0.50 0.00 32.73 3.21
2615 3083 1.211457 CTCCCTTCTAGGCTGCACATT 59.789 52.381 0.50 0.00 32.73 2.71
2616 3084 1.635487 TCCCTTCTAGGCTGCACATTT 59.365 47.619 0.50 0.00 32.73 2.32
2617 3085 2.041620 TCCCTTCTAGGCTGCACATTTT 59.958 45.455 0.50 0.00 32.73 1.82
2618 3086 2.424956 CCCTTCTAGGCTGCACATTTTC 59.575 50.000 0.50 0.00 32.73 2.29
2619 3087 2.424956 CCTTCTAGGCTGCACATTTTCC 59.575 50.000 0.50 0.00 0.00 3.13
2620 3088 3.350833 CTTCTAGGCTGCACATTTTCCT 58.649 45.455 0.50 0.00 0.00 3.36
2621 3089 2.991250 TCTAGGCTGCACATTTTCCTC 58.009 47.619 0.50 0.00 0.00 3.71
2622 3090 2.019984 CTAGGCTGCACATTTTCCTCC 58.980 52.381 0.50 0.00 0.00 4.30
2623 3091 0.407139 AGGCTGCACATTTTCCTCCT 59.593 50.000 0.50 0.00 0.00 3.69
2624 3092 0.813821 GGCTGCACATTTTCCTCCTC 59.186 55.000 0.50 0.00 0.00 3.71
2625 3093 0.813821 GCTGCACATTTTCCTCCTCC 59.186 55.000 0.00 0.00 0.00 4.30
2637 3105 5.491323 TTTCCTCCTCCTTCTTCTTCTTC 57.509 43.478 0.00 0.00 0.00 2.87
2643 3175 3.259625 CCTCCTTCTTCTTCTTCTTCGGT 59.740 47.826 0.00 0.00 0.00 4.69
2647 3179 4.021894 CCTTCTTCTTCTTCTTCGGTCAGA 60.022 45.833 0.00 0.00 0.00 3.27
2648 3180 5.509840 CCTTCTTCTTCTTCTTCGGTCAGAA 60.510 44.000 0.00 0.00 37.31 3.02
2657 3189 2.652382 TTCGGTCAGAACTTGCGCCA 62.652 55.000 4.18 0.00 33.14 5.69
2663 3195 1.269448 TCAGAACTTGCGCCAAAATCC 59.731 47.619 4.18 0.00 0.00 3.01
2666 3198 1.000274 GAACTTGCGCCAAAATCCACT 60.000 47.619 4.18 0.00 0.00 4.00
2672 3204 1.795162 GCGCCAAAATCCACTGAATCG 60.795 52.381 0.00 0.00 0.00 3.34
2675 3207 2.749621 GCCAAAATCCACTGAATCGTCT 59.250 45.455 0.00 0.00 0.00 4.18
2677 3209 3.426695 CCAAAATCCACTGAATCGTCTGC 60.427 47.826 0.00 0.00 0.00 4.26
2684 3337 1.615883 ACTGAATCGTCTGCTGTGACT 59.384 47.619 0.00 0.00 35.00 3.41
2685 3338 1.991264 CTGAATCGTCTGCTGTGACTG 59.009 52.381 0.00 0.00 35.00 3.51
2706 3359 6.476378 ACTGTGAGGATGCAGTAAATAAACT 58.524 36.000 0.00 0.00 43.30 2.66
2708 3361 6.711277 TGTGAGGATGCAGTAAATAAACTCT 58.289 36.000 0.00 0.00 0.00 3.24
2709 3362 6.595326 TGTGAGGATGCAGTAAATAAACTCTG 59.405 38.462 0.00 0.00 0.00 3.35
2710 3363 6.595716 GTGAGGATGCAGTAAATAAACTCTGT 59.404 38.462 0.00 0.00 0.00 3.41
2711 3364 7.764443 GTGAGGATGCAGTAAATAAACTCTGTA 59.236 37.037 0.00 0.00 0.00 2.74
2713 3366 9.331282 GAGGATGCAGTAAATAAACTCTGTATT 57.669 33.333 0.00 0.00 34.49 1.89
2717 3370 8.415192 TGCAGTAAATAAACTCTGTATTACGG 57.585 34.615 0.00 0.00 0.00 4.02
2718 3371 8.252417 TGCAGTAAATAAACTCTGTATTACGGA 58.748 33.333 5.27 5.27 31.67 4.69
2781 3453 1.807165 CATGCAGGACCGACGACAG 60.807 63.158 0.00 0.00 0.00 3.51
2782 3454 2.276116 ATGCAGGACCGACGACAGT 61.276 57.895 0.00 0.00 0.00 3.55
2783 3455 2.430921 GCAGGACCGACGACAGTG 60.431 66.667 0.00 0.00 0.00 3.66
2821 3493 3.067601 GGACTTTACAGTTGGTTGGTTGG 59.932 47.826 0.00 0.00 31.22 3.77
2822 3494 3.697542 GACTTTACAGTTGGTTGGTTGGT 59.302 43.478 0.00 0.00 31.22 3.67
2823 3495 4.090819 ACTTTACAGTTGGTTGGTTGGTT 58.909 39.130 0.00 0.00 0.00 3.67
2824 3496 4.081917 ACTTTACAGTTGGTTGGTTGGTTG 60.082 41.667 0.00 0.00 0.00 3.77
2849 3521 2.032681 GAGCTGCCGTGTTTCCCT 59.967 61.111 0.00 0.00 0.00 4.20
2857 3529 0.031994 CCGTGTTTCCCTTTGCCTTG 59.968 55.000 0.00 0.00 0.00 3.61
2932 3604 3.450115 CGGTCCCCGTCAGAGACC 61.450 72.222 0.00 0.00 45.49 3.85
2933 3605 2.037527 GGTCCCCGTCAGAGACCT 59.962 66.667 1.17 0.00 45.49 3.85
2934 3606 2.352032 GGTCCCCGTCAGAGACCTG 61.352 68.421 1.17 0.00 45.49 4.00
2935 3607 2.680352 TCCCCGTCAGAGACCTGC 60.680 66.667 0.00 0.00 40.20 4.85
2939 3611 2.575993 CGTCAGAGACCTGCCTGG 59.424 66.667 0.00 0.00 40.20 4.45
2976 3648 6.371595 TTGTTTTGGCATAAATGAGGGAAT 57.628 33.333 0.00 0.00 0.00 3.01
2986 3659 6.532657 GCATAAATGAGGGAATTTTCACAGTG 59.467 38.462 0.00 0.00 31.44 3.66
3009 3682 3.033659 TCAACCCTGAGATCTAGGACC 57.966 52.381 15.80 0.00 37.52 4.46
3014 3687 2.656002 CCTGAGATCTAGGACCGTTCA 58.344 52.381 10.96 0.00 37.52 3.18
3017 3690 4.452825 CTGAGATCTAGGACCGTTCAGTA 58.547 47.826 0.00 0.00 0.00 2.74
3044 3721 5.471116 GGTAAACGTCTTTACTCCATTTGGT 59.529 40.000 9.39 0.00 41.10 3.67
3050 3727 6.204108 ACGTCTTTACTCCATTTGGTTACAAG 59.796 38.462 0.00 0.00 37.97 3.16
3058 3735 3.317711 CCATTTGGTTACAAGTGTGCTGA 59.682 43.478 0.00 0.00 41.25 4.26
3061 3738 5.590530 TTTGGTTACAAGTGTGCTGAAAT 57.409 34.783 0.00 0.00 37.97 2.17
3077 3754 4.151157 GCTGAAATTGAAGCAATTGACACC 59.849 41.667 10.34 0.00 42.32 4.16
3084 3761 0.591170 AGCAATTGACACCGAAACCG 59.409 50.000 10.34 0.00 0.00 4.44
3089 3766 1.008329 TTGACACCGAAACCGTCAAC 58.992 50.000 0.00 0.00 42.95 3.18
3102 3779 5.796350 AACCGTCAACACAAGATAATAGC 57.204 39.130 0.00 0.00 0.00 2.97
3103 3780 4.827692 ACCGTCAACACAAGATAATAGCA 58.172 39.130 0.00 0.00 0.00 3.49
3104 3781 4.630069 ACCGTCAACACAAGATAATAGCAC 59.370 41.667 0.00 0.00 0.00 4.40
3105 3782 4.870426 CCGTCAACACAAGATAATAGCACT 59.130 41.667 0.00 0.00 0.00 4.40
3106 3783 6.040247 CCGTCAACACAAGATAATAGCACTA 58.960 40.000 0.00 0.00 0.00 2.74
3107 3784 6.019801 CCGTCAACACAAGATAATAGCACTAC 60.020 42.308 0.00 0.00 0.00 2.73
3124 3801 5.875359 AGCACTACTAATTTACAGTTCCAGC 59.125 40.000 0.00 0.00 0.00 4.85
3126 3803 6.183360 GCACTACTAATTTACAGTTCCAGCAG 60.183 42.308 0.00 0.00 0.00 4.24
3136 3813 0.524862 GTTCCAGCAGCAGACCATTG 59.475 55.000 0.00 0.00 0.00 2.82
3138 3815 1.303888 CCAGCAGCAGACCATTGGT 60.304 57.895 8.42 8.42 39.44 3.67
3167 3850 7.565190 ACCTAATGGACATGTATCAGATCAT 57.435 36.000 0.00 0.00 37.04 2.45
3168 3851 7.982252 ACCTAATGGACATGTATCAGATCATT 58.018 34.615 0.00 3.86 37.04 2.57
3183 3866 3.640967 AGATCATTGCAGTCTACTCCCTC 59.359 47.826 0.00 0.00 0.00 4.30
3184 3867 2.111384 TCATTGCAGTCTACTCCCTCC 58.889 52.381 0.00 0.00 0.00 4.30
3185 3868 1.833630 CATTGCAGTCTACTCCCTCCA 59.166 52.381 0.00 0.00 0.00 3.86
3187 3870 2.024176 TGCAGTCTACTCCCTCCAAA 57.976 50.000 0.00 0.00 0.00 3.28
3189 3872 2.912956 TGCAGTCTACTCCCTCCAAAAT 59.087 45.455 0.00 0.00 0.00 1.82
3191 3874 4.162320 TGCAGTCTACTCCCTCCAAAATAG 59.838 45.833 0.00 0.00 0.00 1.73
3193 3876 5.071115 GCAGTCTACTCCCTCCAAAATAGAT 59.929 44.000 0.00 0.00 0.00 1.98
3194 3877 6.520272 CAGTCTACTCCCTCCAAAATAGATG 58.480 44.000 0.00 0.00 0.00 2.90
3195 3878 6.325028 CAGTCTACTCCCTCCAAAATAGATGA 59.675 42.308 0.00 0.00 0.00 2.92
3196 3879 6.325286 AGTCTACTCCCTCCAAAATAGATGAC 59.675 42.308 0.00 0.00 0.00 3.06
3197 3880 4.779993 ACTCCCTCCAAAATAGATGACC 57.220 45.455 0.00 0.00 0.00 4.02
3198 3881 3.459969 ACTCCCTCCAAAATAGATGACCC 59.540 47.826 0.00 0.00 0.00 4.46
3199 3882 3.459598 CTCCCTCCAAAATAGATGACCCA 59.540 47.826 0.00 0.00 0.00 4.51
3200 3883 3.855599 TCCCTCCAAAATAGATGACCCAA 59.144 43.478 0.00 0.00 0.00 4.12
3201 3884 3.954258 CCCTCCAAAATAGATGACCCAAC 59.046 47.826 0.00 0.00 0.00 3.77
3202 3885 4.325344 CCCTCCAAAATAGATGACCCAACT 60.325 45.833 0.00 0.00 0.00 3.16
3203 3886 5.104109 CCCTCCAAAATAGATGACCCAACTA 60.104 44.000 0.00 0.00 0.00 2.24
3204 3887 5.823045 CCTCCAAAATAGATGACCCAACTAC 59.177 44.000 0.00 0.00 0.00 2.73
3205 3888 6.381498 TCCAAAATAGATGACCCAACTACA 57.619 37.500 0.00 0.00 0.00 2.74
3206 3889 6.785076 TCCAAAATAGATGACCCAACTACAA 58.215 36.000 0.00 0.00 0.00 2.41
3207 3890 7.235079 TCCAAAATAGATGACCCAACTACAAA 58.765 34.615 0.00 0.00 0.00 2.83
3208 3891 7.393234 TCCAAAATAGATGACCCAACTACAAAG 59.607 37.037 0.00 0.00 0.00 2.77
3209 3892 7.176690 CCAAAATAGATGACCCAACTACAAAGT 59.823 37.037 0.00 0.00 37.65 2.66
3223 3906 7.923414 AACTACAAAGTTGGGTCATCTATTC 57.077 36.000 0.00 0.00 44.40 1.75
3225 3908 8.375493 ACTACAAAGTTGGGTCATCTATTCTA 57.625 34.615 0.00 0.00 29.00 2.10
3226 3909 8.822805 ACTACAAAGTTGGGTCATCTATTCTAA 58.177 33.333 0.00 0.00 29.00 2.10
3227 3910 9.667107 CTACAAAGTTGGGTCATCTATTCTAAA 57.333 33.333 0.00 0.00 0.00 1.85
3237 3920 5.984323 GTCATCTATTCTAAAACGGAGGGAC 59.016 44.000 0.00 0.00 0.00 4.46
3244 3927 3.836562 TCTAAAACGGAGGGACTAGCTTT 59.163 43.478 0.00 0.00 41.55 3.51
3252 3941 4.870991 CGGAGGGACTAGCTTTTAAAAGAG 59.129 45.833 28.11 19.81 41.55 2.85
3255 3944 6.940867 GGAGGGACTAGCTTTTAAAAGAGAAA 59.059 38.462 28.11 10.79 41.55 2.52
3259 3948 9.015367 GGGACTAGCTTTTAAAAGAGAAAAGAT 57.985 33.333 28.11 6.39 43.57 2.40
3274 3963 8.549338 AGAGAAAAGATAAAGGAGTTTTACGG 57.451 34.615 0.00 0.00 34.22 4.02
3276 3965 9.428097 GAGAAAAGATAAAGGAGTTTTACGGTA 57.572 33.333 0.00 0.00 34.22 4.02
3277 3966 9.783081 AGAAAAGATAAAGGAGTTTTACGGTAA 57.217 29.630 0.00 0.00 34.22 2.85
3281 3970 9.729281 AAGATAAAGGAGTTTTACGGTAATTCA 57.271 29.630 0.73 0.00 34.22 2.57
3282 3971 9.729281 AGATAAAGGAGTTTTACGGTAATTCAA 57.271 29.630 0.73 0.00 34.22 2.69
3283 3972 9.764870 GATAAAGGAGTTTTACGGTAATTCAAC 57.235 33.333 0.73 3.92 34.22 3.18
3284 3973 7.571080 AAAGGAGTTTTACGGTAATTCAACA 57.429 32.000 13.47 0.00 0.00 3.33
3285 3974 6.549912 AGGAGTTTTACGGTAATTCAACAC 57.450 37.500 13.47 8.76 0.00 3.32
3286 3975 6.293698 AGGAGTTTTACGGTAATTCAACACT 58.706 36.000 13.47 9.43 0.00 3.55
3287 3976 6.204108 AGGAGTTTTACGGTAATTCAACACTG 59.796 38.462 13.47 0.00 0.00 3.66
3288 3977 6.017687 GGAGTTTTACGGTAATTCAACACTGT 60.018 38.462 13.47 0.00 37.92 3.55
3289 3978 7.324354 AGTTTTACGGTAATTCAACACTGTT 57.676 32.000 13.47 0.00 35.84 3.16
3290 3979 7.412063 AGTTTTACGGTAATTCAACACTGTTC 58.588 34.615 13.47 0.00 35.84 3.18
3291 3980 6.922247 TTTACGGTAATTCAACACTGTTCA 57.078 33.333 0.73 0.00 35.84 3.18
3293 3982 4.448210 ACGGTAATTCAACACTGTTCAGT 58.552 39.130 0.00 0.00 29.94 3.41
3295 3984 6.050432 ACGGTAATTCAACACTGTTCAGTAA 58.950 36.000 5.11 0.00 29.94 2.24
3298 3987 6.856426 GGTAATTCAACACTGTTCAGTAAAGC 59.144 38.462 5.11 0.00 0.00 3.51
3299 3988 4.893424 TTCAACACTGTTCAGTAAAGCC 57.107 40.909 5.11 0.00 0.00 4.35
3300 3989 2.869801 TCAACACTGTTCAGTAAAGCCG 59.130 45.455 5.11 0.00 0.00 5.52
3301 3990 2.869801 CAACACTGTTCAGTAAAGCCGA 59.130 45.455 5.11 0.00 0.00 5.54
3303 3992 3.537580 ACACTGTTCAGTAAAGCCGAAA 58.462 40.909 5.11 0.00 0.00 3.46
3304 3993 4.134563 ACACTGTTCAGTAAAGCCGAAAT 58.865 39.130 5.11 0.00 0.00 2.17
3305 3994 4.213482 ACACTGTTCAGTAAAGCCGAAATC 59.787 41.667 5.11 0.00 0.00 2.17
3306 3995 3.751698 ACTGTTCAGTAAAGCCGAAATCC 59.248 43.478 3.47 0.00 0.00 3.01
3307 3996 3.745799 TGTTCAGTAAAGCCGAAATCCA 58.254 40.909 0.00 0.00 0.00 3.41
3309 3998 3.695830 TCAGTAAAGCCGAAATCCAGT 57.304 42.857 0.00 0.00 0.00 4.00
3311 4000 4.394729 TCAGTAAAGCCGAAATCCAGTTT 58.605 39.130 0.00 0.00 0.00 2.66
3312 4001 4.215399 TCAGTAAAGCCGAAATCCAGTTTG 59.785 41.667 0.00 0.00 0.00 2.93
3313 4002 4.215399 CAGTAAAGCCGAAATCCAGTTTGA 59.785 41.667 0.00 0.00 0.00 2.69
3314 4003 3.923017 AAAGCCGAAATCCAGTTTGAG 57.077 42.857 0.00 0.00 0.00 3.02
3315 4004 2.568623 AGCCGAAATCCAGTTTGAGT 57.431 45.000 0.00 0.00 0.00 3.41
3316 4005 2.863809 AGCCGAAATCCAGTTTGAGTT 58.136 42.857 0.00 0.00 0.00 3.01
3317 4006 3.222603 AGCCGAAATCCAGTTTGAGTTT 58.777 40.909 0.00 0.00 0.00 2.66
3318 4007 3.636764 AGCCGAAATCCAGTTTGAGTTTT 59.363 39.130 0.00 0.00 0.00 2.43
3319 4008 4.099419 AGCCGAAATCCAGTTTGAGTTTTT 59.901 37.500 0.00 0.00 0.00 1.94
3320 4009 5.300792 AGCCGAAATCCAGTTTGAGTTTTTA 59.699 36.000 0.00 0.00 0.00 1.52
3321 4010 5.401376 GCCGAAATCCAGTTTGAGTTTTTAC 59.599 40.000 0.00 0.00 0.00 2.01
3322 4011 6.734871 GCCGAAATCCAGTTTGAGTTTTTACT 60.735 38.462 0.00 0.00 0.00 2.24
3323 4012 6.856426 CCGAAATCCAGTTTGAGTTTTTACTC 59.144 38.462 0.00 0.00 37.27 2.59
3324 4013 6.856426 CGAAATCCAGTTTGAGTTTTTACTCC 59.144 38.462 3.10 0.00 35.97 3.85
3325 4014 7.468084 CGAAATCCAGTTTGAGTTTTTACTCCA 60.468 37.037 3.10 0.00 35.97 3.86
3326 4015 7.839680 AATCCAGTTTGAGTTTTTACTCCAT 57.160 32.000 3.10 0.00 35.97 3.41
3327 4016 7.839680 ATCCAGTTTGAGTTTTTACTCCATT 57.160 32.000 3.10 0.00 35.97 3.16
3330 4019 6.701400 CCAGTTTGAGTTTTTACTCCATTTGG 59.299 38.462 3.10 0.00 35.97 3.28
3332 4021 8.143835 CAGTTTGAGTTTTTACTCCATTTGGAT 58.856 33.333 0.00 0.00 44.46 3.41
3335 4024 8.698973 TTGAGTTTTTACTCCATTTGGATACA 57.301 30.769 0.00 0.00 44.46 2.29
3351 4040 5.132897 GGATACAAATGTGCTGAAAACCA 57.867 39.130 0.00 0.00 0.00 3.67
3352 4041 5.723295 GGATACAAATGTGCTGAAAACCAT 58.277 37.500 0.00 0.00 0.00 3.55
3353 4042 5.807011 GGATACAAATGTGCTGAAAACCATC 59.193 40.000 0.00 0.00 0.00 3.51
3354 4043 4.669206 ACAAATGTGCTGAAAACCATCA 57.331 36.364 0.00 0.00 0.00 3.07
3355 4044 5.021033 ACAAATGTGCTGAAAACCATCAA 57.979 34.783 0.00 0.00 0.00 2.57
3356 4045 5.613329 ACAAATGTGCTGAAAACCATCAAT 58.387 33.333 0.00 0.00 0.00 2.57
3357 4046 6.757237 ACAAATGTGCTGAAAACCATCAATA 58.243 32.000 0.00 0.00 0.00 1.90
3358 4047 6.646240 ACAAATGTGCTGAAAACCATCAATAC 59.354 34.615 0.00 0.00 0.00 1.89
3359 4048 6.594788 AATGTGCTGAAAACCATCAATACT 57.405 33.333 0.00 0.00 0.00 2.12
3360 4049 7.701539 AATGTGCTGAAAACCATCAATACTA 57.298 32.000 0.00 0.00 0.00 1.82
3361 4050 6.741992 TGTGCTGAAAACCATCAATACTAG 57.258 37.500 0.00 0.00 0.00 2.57
3362 4051 6.237901 TGTGCTGAAAACCATCAATACTAGT 58.762 36.000 0.00 0.00 0.00 2.57
3363 4052 7.390823 TGTGCTGAAAACCATCAATACTAGTA 58.609 34.615 4.77 4.77 0.00 1.82
3364 4053 7.549134 TGTGCTGAAAACCATCAATACTAGTAG 59.451 37.037 8.85 0.00 0.00 2.57
3365 4054 7.764443 GTGCTGAAAACCATCAATACTAGTAGA 59.236 37.037 8.85 1.56 0.00 2.59
3366 4055 8.318412 TGCTGAAAACCATCAATACTAGTAGAA 58.682 33.333 8.85 0.00 0.00 2.10
3367 4056 8.821894 GCTGAAAACCATCAATACTAGTAGAAG 58.178 37.037 8.85 1.11 0.00 2.85
3380 4069 9.585369 AATACTAGTAGAAGATAACAGTACCCC 57.415 37.037 8.85 0.00 0.00 4.95
3381 4070 7.223472 ACTAGTAGAAGATAACAGTACCCCT 57.777 40.000 3.59 0.00 0.00 4.79
3382 4071 8.342327 ACTAGTAGAAGATAACAGTACCCCTA 57.658 38.462 3.59 0.00 0.00 3.53
3383 4072 8.785859 ACTAGTAGAAGATAACAGTACCCCTAA 58.214 37.037 3.59 0.00 0.00 2.69
3384 4073 9.810870 CTAGTAGAAGATAACAGTACCCCTAAT 57.189 37.037 0.00 0.00 0.00 1.73
3386 4075 9.503369 AGTAGAAGATAACAGTACCCCTAATTT 57.497 33.333 0.00 0.00 0.00 1.82
3389 4078 9.275572 AGAAGATAACAGTACCCCTAATTTACA 57.724 33.333 0.00 0.00 0.00 2.41
3390 4079 9.543783 GAAGATAACAGTACCCCTAATTTACAG 57.456 37.037 0.00 0.00 0.00 2.74
3391 4080 8.619683 AGATAACAGTACCCCTAATTTACAGT 57.380 34.615 0.00 0.00 0.00 3.55
3392 4081 9.054580 AGATAACAGTACCCCTAATTTACAGTT 57.945 33.333 0.00 0.00 32.30 3.16
3398 4087 5.349061 ACCCCTAATTTACAGTTACTCCG 57.651 43.478 0.00 0.00 0.00 4.63
3421 4110 5.793457 CGTTTAAGGTAACAACAATAGCTGC 59.207 40.000 0.00 0.00 41.41 5.25
3433 4202 3.128242 ACAATAGCTGCTGCACTTCATTC 59.872 43.478 18.42 0.00 42.74 2.67
3442 4211 6.187125 TGCTGCACTTCATTCTCTTATTTC 57.813 37.500 0.00 0.00 0.00 2.17
3455 4224 5.627172 TCTCTTATTTCATTTTGAACCGCG 58.373 37.500 0.00 0.00 35.89 6.46
3509 4278 7.026631 TGCTACTGATACAAACCATATTTGC 57.973 36.000 0.00 0.00 32.93 3.68
3553 4331 5.168569 GCTTGCTCTGTTATATGCGGTATA 58.831 41.667 0.00 0.00 0.00 1.47
3554 4332 5.637810 GCTTGCTCTGTTATATGCGGTATAA 59.362 40.000 0.00 0.00 33.82 0.98
3568 4346 9.905713 ATATGCGGTATAAATGATATCCAGTTT 57.094 29.630 0.00 2.18 34.59 2.66
3569 4347 8.635765 ATGCGGTATAAATGATATCCAGTTTT 57.364 30.769 0.00 0.00 34.59 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
133 134 4.202233 TGACACCTGGATAAACGTGTGTTA 60.202 41.667 0.00 0.00 39.47 2.41
136 137 2.761559 TGACACCTGGATAAACGTGTG 58.238 47.619 0.00 0.00 39.47 3.82
140 141 5.880054 AAAAGATGACACCTGGATAAACG 57.120 39.130 0.00 0.00 0.00 3.60
162 163 6.040054 GGAAGCCTTACAGTTGAAAAGGTAAA 59.960 38.462 14.77 0.00 41.57 2.01
164 165 5.067954 GGAAGCCTTACAGTTGAAAAGGTA 58.932 41.667 14.77 0.00 41.57 3.08
165 166 3.889538 GGAAGCCTTACAGTTGAAAAGGT 59.110 43.478 14.77 2.46 41.57 3.50
166 167 3.888930 TGGAAGCCTTACAGTTGAAAAGG 59.111 43.478 11.26 11.26 42.27 3.11
167 168 4.580580 ACTGGAAGCCTTACAGTTGAAAAG 59.419 41.667 16.77 0.00 42.38 2.27
174 175 4.162509 GGAAGATACTGGAAGCCTTACAGT 59.837 45.833 24.94 24.94 46.30 3.55
178 179 3.134804 GCAGGAAGATACTGGAAGCCTTA 59.865 47.826 0.00 0.00 37.60 2.69
181 182 1.210478 TGCAGGAAGATACTGGAAGCC 59.790 52.381 0.00 0.00 37.60 4.35
199 200 8.715088 AGAAAAATTAATGCTTTTGTGAGATGC 58.285 29.630 3.19 0.00 0.00 3.91
224 228 9.302345 TGAAGCGAGAATAAACTAATGAACTAG 57.698 33.333 0.00 0.00 0.00 2.57
280 291 3.627123 GCACCAATGCCAAACTTCTTTTT 59.373 39.130 0.00 0.00 46.97 1.94
281 292 3.205338 GCACCAATGCCAAACTTCTTTT 58.795 40.909 0.00 0.00 46.97 2.27
283 294 2.531522 GCACCAATGCCAAACTTCTT 57.468 45.000 0.00 0.00 46.97 2.52
302 354 6.587608 GGATTTGAAGTTGCTTTCAGTAATGG 59.412 38.462 0.00 0.00 38.25 3.16
317 369 4.263639 TGAAGCTCTCCATGGATTTGAAGT 60.264 41.667 16.63 0.00 0.00 3.01
322 374 2.309755 TGGTGAAGCTCTCCATGGATTT 59.690 45.455 16.63 7.73 35.34 2.17
348 400 3.423996 TCTTTAGCAAACGCCGTTTTT 57.576 38.095 13.32 7.08 33.10 1.94
349 401 3.423996 TTCTTTAGCAAACGCCGTTTT 57.576 38.095 13.32 2.04 33.10 2.43
353 405 2.392933 TGTTTCTTTAGCAAACGCCG 57.607 45.000 0.00 0.00 36.66 6.46
357 409 5.047847 GGAGGGTTTGTTTCTTTAGCAAAC 58.952 41.667 9.94 9.94 46.41 2.93
365 417 5.316987 CTGTAGATGGAGGGTTTGTTTCTT 58.683 41.667 0.00 0.00 0.00 2.52
372 424 2.269940 ACAGCTGTAGATGGAGGGTTT 58.730 47.619 20.16 0.00 35.42 3.27
373 425 1.958288 ACAGCTGTAGATGGAGGGTT 58.042 50.000 20.16 0.00 35.42 4.11
374 426 2.292257 TGTACAGCTGTAGATGGAGGGT 60.292 50.000 26.70 0.00 35.42 4.34
376 428 2.101582 GGTGTACAGCTGTAGATGGAGG 59.898 54.545 26.70 0.00 35.42 4.30
379 431 3.610040 TTGGTGTACAGCTGTAGATGG 57.390 47.619 26.70 0.00 35.42 3.51
455 514 5.920193 AACATAGGCTTGTTAACATGCAT 57.080 34.783 34.13 31.51 45.46 3.96
466 525 5.003804 AGTCCAGTACAAAACATAGGCTTG 58.996 41.667 0.00 0.00 0.00 4.01
534 593 4.165779 CGTATGTTGCTTCATTTTGGGAC 58.834 43.478 0.21 0.00 0.00 4.46
634 694 2.688817 CGGTGATTGGACCCCTCTACTA 60.689 54.545 0.00 0.00 31.57 1.82
638 698 2.670148 GCGGTGATTGGACCCCTCT 61.670 63.158 0.00 0.00 31.57 3.69
648 708 3.118408 TGCTATAACTCCAAGCGGTGATT 60.118 43.478 0.00 0.00 39.14 2.57
649 709 2.434336 TGCTATAACTCCAAGCGGTGAT 59.566 45.455 0.00 0.00 39.14 3.06
759 819 1.103803 GTACAGCTCCTCACCGATCA 58.896 55.000 0.00 0.00 0.00 2.92
779 839 2.644798 AGGTTACTGGGTGCAAGAAGAT 59.355 45.455 0.00 0.00 0.00 2.40
816 876 4.799564 TGACATAAATGCCCTTTTGACC 57.200 40.909 0.00 0.00 0.00 4.02
891 951 4.547671 AGAGGGCAAGTTAGAGCTATACA 58.452 43.478 0.00 0.00 0.00 2.29
910 970 1.042229 ATAGAGCAGCAGCAGGAGAG 58.958 55.000 3.17 0.00 45.49 3.20
959 1019 3.583383 CTGCCTTTCGGAAGCCAG 58.417 61.111 0.00 0.00 32.74 4.85
989 1049 2.195956 GCCCCATTGGAGTAGGCC 59.804 66.667 3.62 0.00 37.66 5.19
990 1050 2.056906 ATCGCCCCATTGGAGTAGGC 62.057 60.000 3.62 7.44 40.33 3.93
991 1051 0.035458 GATCGCCCCATTGGAGTAGG 59.965 60.000 3.62 0.00 35.07 3.18
1011 1071 1.002366 CGACCTTGTCACAGCATAGC 58.998 55.000 0.00 0.00 32.09 2.97
1013 1073 0.391130 GCCGACCTTGTCACAGCATA 60.391 55.000 0.00 0.00 32.09 3.14
1153 1213 1.281867 TCCTCAGCAACCGGATGAAAT 59.718 47.619 17.00 0.00 42.23 2.17
1174 1234 1.474332 AACCCCGTAGACGCCTTTGA 61.474 55.000 0.00 0.00 38.18 2.69
1177 1237 2.660802 CAACCCCGTAGACGCCTT 59.339 61.111 0.00 0.00 38.18 4.35
1190 1254 1.302271 GGTCGAACCCTCACCAACC 60.302 63.158 0.00 0.00 30.04 3.77
1272 1336 2.370445 CCCCTCTTGATGTCCGGCT 61.370 63.158 0.00 0.00 0.00 5.52
1342 1406 0.586319 CAACTACACACCTGTTGCCG 59.414 55.000 0.00 0.00 35.39 5.69
1388 1452 6.598064 AGTTGGTAACTGTGCTGTAATAATCC 59.402 38.462 0.00 0.00 41.01 3.01
1435 1500 1.424493 CGCGGCAACAGAAGGATCTC 61.424 60.000 0.00 0.00 32.03 2.75
1476 1541 5.012893 ACTTGATCTTAGCCCTGAAAAAGG 58.987 41.667 0.00 0.00 46.94 3.11
1484 1549 2.170187 CTCTGCACTTGATCTTAGCCCT 59.830 50.000 0.00 0.00 0.00 5.19
1538 1632 4.914983 AGGAGTGGAATGCATATACATGG 58.085 43.478 0.00 0.00 32.36 3.66
1539 1633 5.877012 GGTAGGAGTGGAATGCATATACATG 59.123 44.000 0.00 0.00 35.07 3.21
1541 1635 4.904853 TGGTAGGAGTGGAATGCATATACA 59.095 41.667 0.00 0.00 0.00 2.29
1542 1636 5.221641 TGTGGTAGGAGTGGAATGCATATAC 60.222 44.000 0.00 0.00 0.00 1.47
1543 1637 4.904853 TGTGGTAGGAGTGGAATGCATATA 59.095 41.667 0.00 0.00 0.00 0.86
1562 1660 7.025963 GTCTTCTATTTTGCTTTCAGATGTGG 58.974 38.462 0.00 0.00 0.00 4.17
1563 1661 6.740002 CGTCTTCTATTTTGCTTTCAGATGTG 59.260 38.462 0.00 0.00 0.00 3.21
1589 1687 7.665690 TGGTGCATTCAACACTACAAATTATT 58.334 30.769 0.00 0.00 34.41 1.40
1617 1715 7.792374 ATATACAGAATGAAAACGCTGACAT 57.208 32.000 0.00 0.00 39.69 3.06
1618 1716 7.333174 TGAATATACAGAATGAAAACGCTGACA 59.667 33.333 0.00 0.00 39.69 3.58
1619 1717 7.684670 TGAATATACAGAATGAAAACGCTGAC 58.315 34.615 0.00 0.00 39.69 3.51
1701 1799 9.311916 GCATTATTATTGCTGGACAACATAAAA 57.688 29.630 3.82 0.00 42.27 1.52
1702 1800 8.473219 TGCATTATTATTGCTGGACAACATAAA 58.527 29.630 10.84 0.00 42.27 1.40
1703 1801 8.005192 TGCATTATTATTGCTGGACAACATAA 57.995 30.769 10.84 0.00 42.27 1.90
1707 1805 6.506147 TCATGCATTATTATTGCTGGACAAC 58.494 36.000 0.00 0.00 42.27 3.32
1708 1806 6.321945 ACTCATGCATTATTATTGCTGGACAA 59.678 34.615 0.00 0.00 44.01 3.18
1712 1810 8.047413 TCATACTCATGCATTATTATTGCTGG 57.953 34.615 0.00 4.66 40.77 4.85
1720 1818 7.395617 AGAGCTGATCATACTCATGCATTATT 58.604 34.615 21.56 0.00 32.71 1.40
1750 1871 1.882623 GAACAGTCCCAGGAAGCAAAG 59.117 52.381 0.00 0.00 0.00 2.77
1751 1872 1.214175 TGAACAGTCCCAGGAAGCAAA 59.786 47.619 0.00 0.00 0.00 3.68
1947 2068 4.479993 ATGTGGCTCAGGCTCGCC 62.480 66.667 15.57 15.57 46.46 5.54
2042 2163 1.920835 AGAGGGACTGAGGTTGGCC 60.921 63.158 0.00 0.00 41.55 5.36
2043 2164 3.813150 AGAGGGACTGAGGTTGGC 58.187 61.111 0.00 0.00 41.55 4.52
2053 2174 2.092323 GTTTATTGGGTGCAGAGGGAC 58.908 52.381 0.00 0.00 34.10 4.46
2130 2251 4.116328 TCCAGGTCGAGCTTCGCG 62.116 66.667 15.83 0.00 40.21 5.87
2131 2252 2.202676 CTCCAGGTCGAGCTTCGC 60.203 66.667 15.83 0.00 40.21 4.70
2132 2253 1.137825 GACTCCAGGTCGAGCTTCG 59.862 63.158 15.83 8.28 42.10 3.79
2181 2302 1.131126 CCAAGGCTGACGCTGTTATTG 59.869 52.381 0.00 0.00 36.09 1.90
2190 2311 0.319900 CGGATATCCCAAGGCTGACG 60.320 60.000 16.36 0.00 34.14 4.35
2231 2352 0.598680 CGGATCATCGCCTCTCAACC 60.599 60.000 0.00 0.00 0.00 3.77
2347 2468 2.047179 GAACCACGGCTCCTCACC 60.047 66.667 0.00 0.00 0.00 4.02
2348 2469 2.047179 GGAACCACGGCTCCTCAC 60.047 66.667 0.00 0.00 0.00 3.51
2349 2470 2.111999 CTTGGAACCACGGCTCCTCA 62.112 60.000 7.05 0.00 31.99 3.86
2408 2529 3.822192 CGACACCGGATCCAGCGA 61.822 66.667 9.46 0.00 0.00 4.93
2430 2551 3.349006 CACTCCAGTGCACCGTGC 61.349 66.667 16.93 16.93 45.29 5.34
2440 2561 4.463879 CTCGCCCCAGCACTCCAG 62.464 72.222 0.00 0.00 39.83 3.86
2496 2617 4.200283 CTGCTCTCTCCGTCGCCC 62.200 72.222 0.00 0.00 0.00 6.13
2499 2620 2.101965 CTGCTGCTCTCTCCGTCG 59.898 66.667 0.00 0.00 0.00 5.12
2552 2676 3.577313 GAAATGGCGGCTCCGAGC 61.577 66.667 12.27 12.27 42.83 5.03
2590 3058 1.051556 CAGCCTAGAAGGGAGGGACC 61.052 65.000 0.00 0.00 35.37 4.46
2591 3059 1.691195 GCAGCCTAGAAGGGAGGGAC 61.691 65.000 0.00 0.00 35.37 4.46
2592 3060 1.383248 GCAGCCTAGAAGGGAGGGA 60.383 63.158 0.00 0.00 35.37 4.20
2593 3061 1.690633 TGCAGCCTAGAAGGGAGGG 60.691 63.158 0.00 0.00 35.37 4.30
2594 3062 1.267574 TGTGCAGCCTAGAAGGGAGG 61.268 60.000 0.00 0.00 35.37 4.30
2595 3063 0.835941 ATGTGCAGCCTAGAAGGGAG 59.164 55.000 0.00 0.00 35.37 4.30
2596 3064 1.289160 AATGTGCAGCCTAGAAGGGA 58.711 50.000 0.00 0.00 35.37 4.20
2597 3065 2.134789 AAATGTGCAGCCTAGAAGGG 57.865 50.000 0.00 0.00 35.37 3.95
2598 3066 2.424956 GGAAAATGTGCAGCCTAGAAGG 59.575 50.000 0.00 0.00 38.80 3.46
2599 3067 3.350833 AGGAAAATGTGCAGCCTAGAAG 58.649 45.455 0.00 0.00 0.00 2.85
2600 3068 3.347216 GAGGAAAATGTGCAGCCTAGAA 58.653 45.455 0.00 0.00 0.00 2.10
2601 3069 2.356125 GGAGGAAAATGTGCAGCCTAGA 60.356 50.000 0.00 0.00 0.00 2.43
2602 3070 2.019984 GGAGGAAAATGTGCAGCCTAG 58.980 52.381 0.00 0.00 0.00 3.02
2603 3071 1.635487 AGGAGGAAAATGTGCAGCCTA 59.365 47.619 0.00 0.00 0.00 3.93
2604 3072 0.407139 AGGAGGAAAATGTGCAGCCT 59.593 50.000 0.00 0.00 0.00 4.58
2605 3073 0.813821 GAGGAGGAAAATGTGCAGCC 59.186 55.000 0.00 0.00 0.00 4.85
2606 3074 0.813821 GGAGGAGGAAAATGTGCAGC 59.186 55.000 0.00 0.00 0.00 5.25
2607 3075 2.503895 AGGAGGAGGAAAATGTGCAG 57.496 50.000 0.00 0.00 0.00 4.41
2608 3076 2.376518 AGAAGGAGGAGGAAAATGTGCA 59.623 45.455 0.00 0.00 0.00 4.57
2609 3077 3.078891 AGAAGGAGGAGGAAAATGTGC 57.921 47.619 0.00 0.00 0.00 4.57
2610 3078 4.916183 AGAAGAAGGAGGAGGAAAATGTG 58.084 43.478 0.00 0.00 0.00 3.21
2611 3079 5.311913 AGAAGAAGAAGGAGGAGGAAAATGT 59.688 40.000 0.00 0.00 0.00 2.71
2612 3080 5.814481 AGAAGAAGAAGGAGGAGGAAAATG 58.186 41.667 0.00 0.00 0.00 2.32
2613 3081 6.274436 AGAAGAAGAAGAAGGAGGAGGAAAAT 59.726 38.462 0.00 0.00 0.00 1.82
2614 3082 5.608860 AGAAGAAGAAGAAGGAGGAGGAAAA 59.391 40.000 0.00 0.00 0.00 2.29
2615 3083 5.158889 AGAAGAAGAAGAAGGAGGAGGAAA 58.841 41.667 0.00 0.00 0.00 3.13
2616 3084 4.757692 AGAAGAAGAAGAAGGAGGAGGAA 58.242 43.478 0.00 0.00 0.00 3.36
2617 3085 4.412060 AGAAGAAGAAGAAGGAGGAGGA 57.588 45.455 0.00 0.00 0.00 3.71
2618 3086 4.381505 CGAAGAAGAAGAAGAAGGAGGAGG 60.382 50.000 0.00 0.00 0.00 4.30
2619 3087 4.381505 CCGAAGAAGAAGAAGAAGGAGGAG 60.382 50.000 0.00 0.00 0.00 3.69
2620 3088 3.511934 CCGAAGAAGAAGAAGAAGGAGGA 59.488 47.826 0.00 0.00 0.00 3.71
2621 3089 3.259625 ACCGAAGAAGAAGAAGAAGGAGG 59.740 47.826 0.00 0.00 0.00 4.30
2622 3090 4.021894 TGACCGAAGAAGAAGAAGAAGGAG 60.022 45.833 0.00 0.00 0.00 3.69
2623 3091 3.895656 TGACCGAAGAAGAAGAAGAAGGA 59.104 43.478 0.00 0.00 0.00 3.36
2624 3092 4.021894 TCTGACCGAAGAAGAAGAAGAAGG 60.022 45.833 0.00 0.00 0.00 3.46
2625 3093 5.127693 TCTGACCGAAGAAGAAGAAGAAG 57.872 43.478 0.00 0.00 0.00 2.85
2637 3105 1.493311 GCGCAAGTTCTGACCGAAG 59.507 57.895 0.30 0.00 41.68 3.79
2643 3175 1.269448 GGATTTTGGCGCAAGTTCTGA 59.731 47.619 10.83 0.00 41.68 3.27
2647 3179 1.039856 AGTGGATTTTGGCGCAAGTT 58.960 45.000 10.83 0.00 41.68 2.66
2648 3180 0.314935 CAGTGGATTTTGGCGCAAGT 59.685 50.000 10.83 0.00 41.68 3.16
2657 3189 3.438087 CAGCAGACGATTCAGTGGATTTT 59.562 43.478 0.00 0.00 0.00 1.82
2663 3195 1.723542 GTCACAGCAGACGATTCAGTG 59.276 52.381 0.00 0.00 0.00 3.66
2666 3198 1.341209 ACAGTCACAGCAGACGATTCA 59.659 47.619 0.00 0.00 43.24 2.57
2672 3204 0.676184 TCCTCACAGTCACAGCAGAC 59.324 55.000 0.00 0.00 38.81 3.51
2675 3207 0.321034 GCATCCTCACAGTCACAGCA 60.321 55.000 0.00 0.00 0.00 4.41
2677 3209 1.001746 ACTGCATCCTCACAGTCACAG 59.998 52.381 0.00 0.00 43.55 3.66
2684 3337 6.595326 CAGAGTTTATTTACTGCATCCTCACA 59.405 38.462 0.00 0.00 0.00 3.58
2685 3338 6.595716 ACAGAGTTTATTTACTGCATCCTCAC 59.404 38.462 0.00 0.00 34.25 3.51
2740 3412 3.059868 ACTTATTGTTCAACACGCACTCG 60.060 43.478 0.00 0.00 42.43 4.18
2752 3424 3.063997 CGGTCCTGCATGACTTATTGTTC 59.936 47.826 19.65 2.19 35.54 3.18
2753 3425 3.009723 CGGTCCTGCATGACTTATTGTT 58.990 45.455 19.65 0.00 35.54 2.83
2754 3426 2.236146 TCGGTCCTGCATGACTTATTGT 59.764 45.455 19.65 0.00 35.54 2.71
2755 3427 2.609459 GTCGGTCCTGCATGACTTATTG 59.391 50.000 19.65 7.14 35.54 1.90
2756 3428 2.738643 CGTCGGTCCTGCATGACTTATT 60.739 50.000 19.65 0.00 35.54 1.40
2757 3429 1.202417 CGTCGGTCCTGCATGACTTAT 60.202 52.381 19.65 0.00 35.54 1.73
2781 3453 0.372334 CCGTGCGCCATTAACTACAC 59.628 55.000 4.18 0.00 0.00 2.90
2782 3454 0.246910 TCCGTGCGCCATTAACTACA 59.753 50.000 4.18 0.00 0.00 2.74
2783 3455 0.648958 GTCCGTGCGCCATTAACTAC 59.351 55.000 4.18 0.00 0.00 2.73
2821 3493 2.486966 GCAGCTCGGGCATTCAAC 59.513 61.111 11.40 0.00 41.70 3.18
2822 3494 2.751436 GGCAGCTCGGGCATTCAA 60.751 61.111 11.40 0.00 41.70 2.69
2857 3529 2.710096 TCTGGGTTTTGATCCGGATC 57.290 50.000 33.41 33.41 33.81 3.36
2924 3596 2.121385 AGCCAGGCAGGTCTCTGA 59.879 61.111 15.80 0.00 43.49 3.27
2925 3597 2.268280 CAGCCAGGCAGGTCTCTG 59.732 66.667 15.80 0.00 43.64 3.35
2926 3598 3.715097 GCAGCCAGGCAGGTCTCT 61.715 66.667 15.80 0.00 40.61 3.10
2927 3599 3.715097 AGCAGCCAGGCAGGTCTC 61.715 66.667 15.80 0.00 40.61 3.36
2928 3600 4.031129 CAGCAGCCAGGCAGGTCT 62.031 66.667 15.80 1.32 40.61 3.85
2929 3601 4.341783 ACAGCAGCCAGGCAGGTC 62.342 66.667 15.80 0.00 40.61 3.85
2930 3602 4.655647 CACAGCAGCCAGGCAGGT 62.656 66.667 15.80 8.83 40.61 4.00
2932 3604 4.340246 TCCACAGCAGCCAGGCAG 62.340 66.667 15.80 6.89 35.83 4.85
2933 3605 4.648626 GTCCACAGCAGCCAGGCA 62.649 66.667 15.80 0.00 35.83 4.75
2935 3607 2.703675 AAAGGTCCACAGCAGCCAGG 62.704 60.000 0.00 0.00 0.00 4.45
2939 3611 0.746659 AAACAAAGGTCCACAGCAGC 59.253 50.000 0.00 0.00 0.00 5.25
2976 3648 4.531854 TCAGGGTTGAATCACTGTGAAAA 58.468 39.130 15.31 7.16 39.58 2.29
2986 3659 4.039852 GGTCCTAGATCTCAGGGTTGAATC 59.960 50.000 0.00 0.00 33.66 2.52
3009 3682 5.895216 AAGACGTTTACCTTTACTGAACG 57.105 39.130 5.51 5.51 45.96 3.95
3017 3690 7.255346 CCAAATGGAGTAAAGACGTTTACCTTT 60.255 37.037 6.54 5.98 46.44 3.11
3044 3721 5.163571 TGCTTCAATTTCAGCACACTTGTAA 60.164 36.000 4.48 0.00 41.20 2.41
3050 3727 4.746115 TCAATTGCTTCAATTTCAGCACAC 59.254 37.500 7.67 0.00 45.77 3.82
3058 3735 4.582701 TCGGTGTCAATTGCTTCAATTT 57.417 36.364 0.00 0.00 40.60 1.82
3061 3738 3.490078 GGTTTCGGTGTCAATTGCTTCAA 60.490 43.478 0.00 0.00 0.00 2.69
3072 3749 0.302589 GTGTTGACGGTTTCGGTGTC 59.697 55.000 0.00 0.00 41.39 3.67
3077 3754 4.718858 TTATCTTGTGTTGACGGTTTCG 57.281 40.909 0.00 0.00 43.02 3.46
3084 3761 9.582431 TTAGTAGTGCTATTATCTTGTGTTGAC 57.418 33.333 0.00 0.00 0.00 3.18
3102 3779 6.183360 GCTGCTGGAACTGTAAATTAGTAGTG 60.183 42.308 0.00 0.00 0.00 2.74
3103 3780 5.875359 GCTGCTGGAACTGTAAATTAGTAGT 59.125 40.000 0.00 0.00 0.00 2.73
3104 3781 5.874810 TGCTGCTGGAACTGTAAATTAGTAG 59.125 40.000 0.00 0.00 0.00 2.57
3105 3782 5.800296 TGCTGCTGGAACTGTAAATTAGTA 58.200 37.500 0.00 0.00 0.00 1.82
3106 3783 4.651778 TGCTGCTGGAACTGTAAATTAGT 58.348 39.130 0.00 0.00 0.00 2.24
3107 3784 4.937620 TCTGCTGCTGGAACTGTAAATTAG 59.062 41.667 6.69 0.00 0.00 1.73
3150 3829 5.061853 ACTGCAATGATCTGATACATGTCC 58.938 41.667 0.00 0.00 0.00 4.02
3167 3850 2.024176 TTGGAGGGAGTAGACTGCAA 57.976 50.000 3.48 0.00 41.71 4.08
3168 3851 2.024176 TTTGGAGGGAGTAGACTGCA 57.976 50.000 3.48 0.00 35.89 4.41
3183 3866 7.176690 ACTTTGTAGTTGGGTCATCTATTTTGG 59.823 37.037 0.00 0.00 0.00 3.28
3184 3867 8.110860 ACTTTGTAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
3185 3868 8.706322 AACTTTGTAGTTGGGTCATCTATTTT 57.294 30.769 0.00 0.00 42.91 1.82
3199 3882 7.690256 AGAATAGATGACCCAACTTTGTAGTT 58.310 34.615 0.00 0.00 45.40 2.24
3200 3883 7.259088 AGAATAGATGACCCAACTTTGTAGT 57.741 36.000 0.00 0.00 35.68 2.73
3201 3884 9.667107 TTTAGAATAGATGACCCAACTTTGTAG 57.333 33.333 0.00 0.00 0.00 2.74
3203 3886 8.793592 GTTTTAGAATAGATGACCCAACTTTGT 58.206 33.333 0.00 0.00 0.00 2.83
3204 3887 7.962918 CGTTTTAGAATAGATGACCCAACTTTG 59.037 37.037 0.00 0.00 0.00 2.77
3205 3888 7.120726 CCGTTTTAGAATAGATGACCCAACTTT 59.879 37.037 0.00 0.00 0.00 2.66
3206 3889 6.598064 CCGTTTTAGAATAGATGACCCAACTT 59.402 38.462 0.00 0.00 0.00 2.66
3207 3890 6.070424 TCCGTTTTAGAATAGATGACCCAACT 60.070 38.462 0.00 0.00 0.00 3.16
3208 3891 6.110707 TCCGTTTTAGAATAGATGACCCAAC 58.889 40.000 0.00 0.00 0.00 3.77
3209 3892 6.302535 TCCGTTTTAGAATAGATGACCCAA 57.697 37.500 0.00 0.00 0.00 4.12
3210 3893 5.163343 CCTCCGTTTTAGAATAGATGACCCA 60.163 44.000 0.00 0.00 0.00 4.51
3211 3894 5.298347 CCTCCGTTTTAGAATAGATGACCC 58.702 45.833 0.00 0.00 0.00 4.46
3213 3896 5.984323 GTCCCTCCGTTTTAGAATAGATGAC 59.016 44.000 0.00 0.00 0.00 3.06
3216 3899 6.015265 GCTAGTCCCTCCGTTTTAGAATAGAT 60.015 42.308 0.00 0.00 29.06 1.98
3218 3901 5.302313 AGCTAGTCCCTCCGTTTTAGAATAG 59.698 44.000 0.00 0.00 0.00 1.73
3223 3906 3.889520 AAGCTAGTCCCTCCGTTTTAG 57.110 47.619 0.00 0.00 0.00 1.85
3225 3908 3.503800 AAAAGCTAGTCCCTCCGTTTT 57.496 42.857 0.00 0.00 0.00 2.43
3226 3909 4.628963 TTAAAAGCTAGTCCCTCCGTTT 57.371 40.909 0.00 0.00 0.00 3.60
3227 3910 4.628963 TTTAAAAGCTAGTCCCTCCGTT 57.371 40.909 0.00 0.00 0.00 4.44
3255 3944 9.729281 TGAATTACCGTAAAACTCCTTTATCTT 57.271 29.630 0.00 0.00 32.14 2.40
3259 3948 8.558700 GTGTTGAATTACCGTAAAACTCCTTTA 58.441 33.333 0.00 0.00 0.00 1.85
3263 3952 6.017687 ACAGTGTTGAATTACCGTAAAACTCC 60.018 38.462 0.00 0.00 0.00 3.85
3266 3955 7.188157 TGAACAGTGTTGAATTACCGTAAAAC 58.812 34.615 14.57 0.00 0.00 2.43
3268 3957 6.539464 ACTGAACAGTGTTGAATTACCGTAAA 59.461 34.615 14.57 0.00 40.75 2.01
3270 3959 5.603596 ACTGAACAGTGTTGAATTACCGTA 58.396 37.500 14.57 0.00 40.75 4.02
3272 3961 6.533819 TTACTGAACAGTGTTGAATTACCG 57.466 37.500 14.57 0.00 42.52 4.02
3274 3963 6.856426 GGCTTTACTGAACAGTGTTGAATTAC 59.144 38.462 14.57 0.00 42.52 1.89
3276 3965 5.505654 CGGCTTTACTGAACAGTGTTGAATT 60.506 40.000 14.57 0.00 42.52 2.17
3277 3966 4.024048 CGGCTTTACTGAACAGTGTTGAAT 60.024 41.667 14.57 0.00 42.52 2.57
3278 3967 3.311322 CGGCTTTACTGAACAGTGTTGAA 59.689 43.478 14.57 0.23 42.52 2.69
3279 3968 2.869801 CGGCTTTACTGAACAGTGTTGA 59.130 45.455 14.57 3.64 42.52 3.18
3280 3969 2.869801 TCGGCTTTACTGAACAGTGTTG 59.130 45.455 14.57 2.19 42.52 3.33
3281 3970 3.188159 TCGGCTTTACTGAACAGTGTT 57.812 42.857 8.61 8.61 42.52 3.32
3282 3971 2.902705 TCGGCTTTACTGAACAGTGT 57.097 45.000 16.37 0.00 42.52 3.55
3283 3972 4.378459 GGATTTCGGCTTTACTGAACAGTG 60.378 45.833 16.37 2.63 43.49 3.66
3284 3973 3.751698 GGATTTCGGCTTTACTGAACAGT 59.248 43.478 12.10 12.10 43.49 3.55
3285 3974 3.751175 TGGATTTCGGCTTTACTGAACAG 59.249 43.478 0.00 0.00 43.49 3.16
3286 3975 3.745799 TGGATTTCGGCTTTACTGAACA 58.254 40.909 0.00 0.00 43.49 3.18
3287 3976 3.751698 ACTGGATTTCGGCTTTACTGAAC 59.248 43.478 0.00 0.00 43.49 3.18
3288 3977 4.015872 ACTGGATTTCGGCTTTACTGAA 57.984 40.909 0.00 0.00 42.07 3.02
3289 3978 3.695830 ACTGGATTTCGGCTTTACTGA 57.304 42.857 0.00 0.00 0.00 3.41
3290 3979 4.215399 TCAAACTGGATTTCGGCTTTACTG 59.785 41.667 0.00 0.00 0.00 2.74
3291 3980 4.394729 TCAAACTGGATTTCGGCTTTACT 58.605 39.130 0.00 0.00 0.00 2.24
3293 3982 4.394729 ACTCAAACTGGATTTCGGCTTTA 58.605 39.130 0.00 0.00 0.00 1.85
3295 3984 2.863809 ACTCAAACTGGATTTCGGCTT 58.136 42.857 0.00 0.00 0.00 4.35
3298 3987 6.735130 AGTAAAAACTCAAACTGGATTTCGG 58.265 36.000 0.00 0.00 0.00 4.30
3299 3988 6.856426 GGAGTAAAAACTCAAACTGGATTTCG 59.144 38.462 7.75 0.00 38.44 3.46
3300 3989 7.712797 TGGAGTAAAAACTCAAACTGGATTTC 58.287 34.615 7.75 0.00 38.44 2.17
3301 3990 7.654022 TGGAGTAAAAACTCAAACTGGATTT 57.346 32.000 7.75 0.00 38.44 2.17
3303 3992 7.839680 AATGGAGTAAAAACTCAAACTGGAT 57.160 32.000 7.75 0.00 38.44 3.41
3304 3993 7.417342 CCAAATGGAGTAAAAACTCAAACTGGA 60.417 37.037 7.75 0.00 38.44 3.86
3305 3994 6.701400 CCAAATGGAGTAAAAACTCAAACTGG 59.299 38.462 7.75 4.18 38.44 4.00
3306 3995 7.488322 TCCAAATGGAGTAAAAACTCAAACTG 58.512 34.615 7.75 0.00 39.78 3.16
3307 3996 7.654022 TCCAAATGGAGTAAAAACTCAAACT 57.346 32.000 7.75 0.00 39.78 2.66
3326 4015 5.988561 GGTTTTCAGCACATTTGTATCCAAA 59.011 36.000 0.00 0.00 44.27 3.28
3327 4016 5.069648 TGGTTTTCAGCACATTTGTATCCAA 59.930 36.000 0.00 0.00 0.00 3.53
3330 4019 6.389091 TGATGGTTTTCAGCACATTTGTATC 58.611 36.000 0.00 0.00 36.79 2.24
3332 4021 5.781210 TGATGGTTTTCAGCACATTTGTA 57.219 34.783 0.00 0.00 36.79 2.41
3335 4024 6.996509 AGTATTGATGGTTTTCAGCACATTT 58.003 32.000 0.00 0.00 41.97 2.32
3337 4026 6.886459 ACTAGTATTGATGGTTTTCAGCACAT 59.114 34.615 0.00 0.00 41.97 3.21
3338 4027 6.237901 ACTAGTATTGATGGTTTTCAGCACA 58.762 36.000 0.00 0.00 41.97 4.57
3341 4030 8.718102 TTCTACTAGTATTGATGGTTTTCAGC 57.282 34.615 2.33 0.00 0.00 4.26
3354 4043 9.585369 GGGGTACTGTTATCTTCTACTAGTATT 57.415 37.037 2.33 0.00 0.00 1.89
3355 4044 8.957926 AGGGGTACTGTTATCTTCTACTAGTAT 58.042 37.037 2.33 0.00 0.00 2.12
3356 4045 8.342327 AGGGGTACTGTTATCTTCTACTAGTA 57.658 38.462 1.89 1.89 0.00 1.82
3357 4046 7.223472 AGGGGTACTGTTATCTTCTACTAGT 57.777 40.000 0.00 0.00 0.00 2.57
3358 4047 9.810870 ATTAGGGGTACTGTTATCTTCTACTAG 57.189 37.037 0.00 0.00 0.00 2.57
3360 4049 9.503369 AAATTAGGGGTACTGTTATCTTCTACT 57.497 33.333 0.00 0.00 0.00 2.57
3363 4052 9.275572 TGTAAATTAGGGGTACTGTTATCTTCT 57.724 33.333 0.00 0.00 0.00 2.85
3364 4053 9.543783 CTGTAAATTAGGGGTACTGTTATCTTC 57.456 37.037 0.00 0.00 0.00 2.87
3365 4054 9.054580 ACTGTAAATTAGGGGTACTGTTATCTT 57.945 33.333 0.00 0.00 28.92 2.40
3366 4055 8.619683 ACTGTAAATTAGGGGTACTGTTATCT 57.380 34.615 0.00 0.00 28.92 1.98
3369 4058 9.325248 AGTAACTGTAAATTAGGGGTACTGTTA 57.675 33.333 10.34 10.34 39.29 2.41
3370 4059 8.211030 AGTAACTGTAAATTAGGGGTACTGTT 57.789 34.615 11.71 11.71 40.64 3.16
3371 4060 7.093156 GGAGTAACTGTAAATTAGGGGTACTGT 60.093 40.741 7.33 0.00 33.07 3.55
3372 4061 7.270779 GGAGTAACTGTAAATTAGGGGTACTG 58.729 42.308 7.33 0.00 0.00 2.74
3373 4062 6.097412 CGGAGTAACTGTAAATTAGGGGTACT 59.903 42.308 3.61 3.61 0.00 2.73
3374 4063 6.127338 ACGGAGTAACTGTAAATTAGGGGTAC 60.127 42.308 0.00 0.00 41.94 3.34
3375 4064 5.957774 ACGGAGTAACTGTAAATTAGGGGTA 59.042 40.000 0.00 0.00 41.94 3.69
3376 4065 4.779489 ACGGAGTAACTGTAAATTAGGGGT 59.221 41.667 0.00 0.00 41.94 4.95
3377 4066 5.349061 ACGGAGTAACTGTAAATTAGGGG 57.651 43.478 0.00 0.00 41.94 4.79
3378 4067 8.776376 TTAAACGGAGTAACTGTAAATTAGGG 57.224 34.615 0.00 0.00 45.00 3.53
3379 4068 8.876790 CCTTAAACGGAGTAACTGTAAATTAGG 58.123 37.037 0.00 0.00 45.00 2.69
3380 4069 9.428097 ACCTTAAACGGAGTAACTGTAAATTAG 57.572 33.333 0.00 0.00 45.00 1.73
3382 4071 9.777297 TTACCTTAAACGGAGTAACTGTAAATT 57.223 29.630 0.00 0.00 45.00 1.82
3383 4072 9.208022 GTTACCTTAAACGGAGTAACTGTAAAT 57.792 33.333 0.00 0.00 45.00 1.40
3384 4073 8.200792 TGTTACCTTAAACGGAGTAACTGTAAA 58.799 33.333 11.77 0.00 45.00 2.01
3385 4074 7.721402 TGTTACCTTAAACGGAGTAACTGTAA 58.279 34.615 11.77 0.00 45.00 2.41
3386 4075 7.283625 TGTTACCTTAAACGGAGTAACTGTA 57.716 36.000 11.77 0.00 45.00 2.74
3387 4076 6.160576 TGTTACCTTAAACGGAGTAACTGT 57.839 37.500 11.77 0.00 45.00 3.55
3388 4077 6.479660 TGTTGTTACCTTAAACGGAGTAACTG 59.520 38.462 11.77 0.00 45.00 3.16
3389 4078 6.581712 TGTTGTTACCTTAAACGGAGTAACT 58.418 36.000 11.77 0.00 45.00 2.24
3390 4079 6.843069 TGTTGTTACCTTAAACGGAGTAAC 57.157 37.500 5.22 5.22 45.00 2.50
3391 4080 9.206870 CTATTGTTGTTACCTTAAACGGAGTAA 57.793 33.333 0.00 0.00 45.00 2.24
3392 4081 7.331687 GCTATTGTTGTTACCTTAAACGGAGTA 59.668 37.037 0.00 0.00 45.00 2.59
3394 4083 6.370718 AGCTATTGTTGTTACCTTAAACGGAG 59.629 38.462 0.00 0.00 31.76 4.63
3398 4087 6.801862 CAGCAGCTATTGTTGTTACCTTAAAC 59.198 38.462 0.00 0.00 33.74 2.01
3421 4110 9.635520 AAAATGAAATAAGAGAATGAAGTGCAG 57.364 29.630 0.00 0.00 0.00 4.41
3433 4202 4.262976 GCGCGGTTCAAAATGAAATAAGAG 59.737 41.667 8.83 0.00 38.22 2.85
3442 4211 1.154035 GAGGGCGCGGTTCAAAATG 60.154 57.895 8.83 0.00 0.00 2.32
3452 4221 1.136057 GTAAAAACTGAAGAGGGCGCG 60.136 52.381 0.00 0.00 0.00 6.86
3455 4224 5.705905 AGTATGTGTAAAAACTGAAGAGGGC 59.294 40.000 0.00 0.00 0.00 5.19
3518 4290 2.031682 CAGAGCAAGCACACCTGTAAAC 60.032 50.000 0.00 0.00 0.00 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.