Multiple sequence alignment - TraesCS2B01G583400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G583400 chr2B 100.000 4483 0 0 1 4483 770744824 770749306 0.000000e+00 8279.0
1 TraesCS2B01G583400 chr2B 87.481 1326 109 18 891 2165 771160422 771159103 0.000000e+00 1476.0
2 TraesCS2B01G583400 chr2B 80.873 1077 112 41 1327 2323 771048566 771047504 0.000000e+00 761.0
3 TraesCS2B01G583400 chr2B 82.572 591 85 9 956 1537 771924313 771923732 5.180000e-139 505.0
4 TraesCS2B01G583400 chr2B 86.066 488 33 13 2307 2792 771047491 771047037 4.030000e-135 492.0
5 TraesCS2B01G583400 chr2B 78.403 764 106 39 2266 2985 79322605 79321857 4.120000e-120 442.0
6 TraesCS2B01G583400 chr2B 91.346 312 27 0 964 1275 771049292 771048981 1.150000e-115 427.0
7 TraesCS2B01G583400 chr2B 92.647 272 17 1 2826 3097 771046974 771046706 5.440000e-104 388.0
8 TraesCS2B01G583400 chr2B 90.244 205 12 3 3352 3556 771046405 771046209 1.240000e-65 261.0
9 TraesCS2B01G583400 chr2B 78.836 189 26 7 544 723 178712199 178712016 1.020000e-21 115.0
10 TraesCS2B01G583400 chr2B 86.207 87 5 5 630 710 771160698 771160613 2.220000e-13 87.9
11 TraesCS2B01G583400 chr2D 83.333 2604 261 98 1101 3566 627980876 627978308 0.000000e+00 2244.0
12 TraesCS2B01G583400 chr2D 94.046 907 34 12 2613 3502 627955052 627955955 0.000000e+00 1358.0
13 TraesCS2B01G583400 chr2D 89.675 862 46 6 953 1772 627935517 627936377 0.000000e+00 1059.0
14 TraesCS2B01G583400 chr2D 86.409 802 80 14 891 1665 628016366 628015567 0.000000e+00 850.0
15 TraesCS2B01G583400 chr2D 86.667 555 68 2 990 1541 628623384 628623935 1.070000e-170 610.0
16 TraesCS2B01G583400 chr2D 81.619 593 92 11 954 1537 628643101 628643685 4.060000e-130 475.0
17 TraesCS2B01G583400 chr2D 78.424 774 110 37 2254 2985 51089839 51089081 6.840000e-123 451.0
18 TraesCS2B01G583400 chr2D 88.545 323 23 6 3579 3887 627956301 627956623 3.270000e-101 379.0
19 TraesCS2B01G583400 chr2D 79.121 546 78 17 1668 2182 628996131 628995591 1.190000e-90 344.0
20 TraesCS2B01G583400 chr2D 81.760 466 32 18 3977 4393 627956671 627957132 1.540000e-89 340.0
21 TraesCS2B01G583400 chr2D 94.245 139 8 0 1769 1907 627954651 627954789 3.510000e-51 213.0
22 TraesCS2B01G583400 chr2D 89.865 148 13 2 3696 3842 627978128 627977982 5.920000e-44 189.0
23 TraesCS2B01G583400 chr2D 78.676 272 56 2 1668 1938 628164483 628164213 3.560000e-41 180.0
24 TraesCS2B01G583400 chr2D 96.875 96 1 1 2519 2614 627954789 627954882 4.640000e-35 159.0
25 TraesCS2B01G583400 chr2D 91.579 95 4 1 4389 4483 627957844 627957934 1.310000e-25 128.0
26 TraesCS2B01G583400 chr2D 97.059 34 1 0 3582 3615 627978218 627978185 1.740000e-04 58.4
27 TraesCS2B01G583400 chr2A 92.578 1482 68 19 2099 3566 758413132 758414585 0.000000e+00 2089.0
28 TraesCS2B01G583400 chr2A 82.868 2364 218 83 1297 3566 758516869 758514599 0.000000e+00 1949.0
29 TraesCS2B01G583400 chr2A 88.141 1248 98 11 964 2165 758526653 758525410 0.000000e+00 1439.0
30 TraesCS2B01G583400 chr2A 89.979 938 48 11 959 1851 758409368 758410304 0.000000e+00 1170.0
31 TraesCS2B01G583400 chr2A 88.483 547 55 7 172 717 758408583 758409122 0.000000e+00 654.0
32 TraesCS2B01G583400 chr2A 80.494 810 113 19 990 1763 758596582 758597382 3.010000e-161 579.0
33 TraesCS2B01G583400 chr2A 94.428 341 12 5 3588 3925 758414664 758415000 6.650000e-143 518.0
34 TraesCS2B01G583400 chr2A 95.425 153 7 0 1948 2100 758412503 758412655 1.250000e-60 244.0
35 TraesCS2B01G583400 chr2A 90.541 148 12 2 3696 3842 758514420 758514274 1.270000e-45 195.0
36 TraesCS2B01G583400 chr2A 86.923 130 14 3 4157 4284 758512655 758512527 4.670000e-30 143.0
37 TraesCS2B01G583400 chr2A 78.088 251 34 16 4236 4483 758415081 758415313 6.050000e-29 139.0
38 TraesCS2B01G583400 chr2A 85.556 90 12 1 630 718 758527019 758526930 4.770000e-15 93.5
39 TraesCS2B01G583400 chr2A 84.783 92 12 2 630 720 131708954 131708864 1.720000e-14 91.6
40 TraesCS2B01G583400 chr2A 95.745 47 1 1 1845 1890 758412415 758412461 1.730000e-09 75.0
41 TraesCS2B01G583400 chr2A 100.000 34 0 0 4051 4084 758512744 758512711 3.740000e-06 63.9
42 TraesCS2B01G583400 chr2A 97.059 34 1 0 3582 3615 758514510 758514477 1.740000e-04 58.4
43 TraesCS2B01G583400 chr2A 100.000 28 0 0 3799 3826 74975422 74975395 8.000000e-03 52.8
44 TraesCS2B01G583400 chr1A 82.514 692 83 20 964 1636 551671892 551672564 1.400000e-159 573.0
45 TraesCS2B01G583400 chr4D 75.745 235 42 9 488 719 107714453 107714231 2.210000e-18 104.0
46 TraesCS2B01G583400 chr4B 78.814 118 20 5 596 710 80549593 80549478 1.730000e-09 75.0
47 TraesCS2B01G583400 chr4B 79.612 103 16 5 611 710 80578902 80578802 8.050000e-08 69.4
48 TraesCS2B01G583400 chr3D 80.000 100 10 10 3736 3834 439627833 439627743 1.040000e-06 65.8
49 TraesCS2B01G583400 chr3A 95.238 42 1 1 3793 3834 539941 539901 1.040000e-06 65.8
50 TraesCS2B01G583400 chrUn 90.698 43 3 1 3787 3828 100849072 100849114 6.260000e-04 56.5
51 TraesCS2B01G583400 chr6A 94.444 36 2 0 3799 3834 587560019 587559984 6.260000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G583400 chr2B 770744824 770749306 4482 False 8279.000000 8279 100.000000 1 4483 1 chr2B.!!$F1 4482
1 TraesCS2B01G583400 chr2B 771159103 771160698 1595 True 781.950000 1476 86.844000 630 2165 2 chr2B.!!$R5 1535
2 TraesCS2B01G583400 chr2B 771923732 771924313 581 True 505.000000 505 82.572000 956 1537 1 chr2B.!!$R3 581
3 TraesCS2B01G583400 chr2B 771046209 771049292 3083 True 465.800000 761 88.235200 964 3556 5 chr2B.!!$R4 2592
4 TraesCS2B01G583400 chr2B 79321857 79322605 748 True 442.000000 442 78.403000 2266 2985 1 chr2B.!!$R1 719
5 TraesCS2B01G583400 chr2D 627935517 627936377 860 False 1059.000000 1059 89.675000 953 1772 1 chr2D.!!$F1 819
6 TraesCS2B01G583400 chr2D 628015567 628016366 799 True 850.000000 850 86.409000 891 1665 1 chr2D.!!$R2 774
7 TraesCS2B01G583400 chr2D 627977982 627980876 2894 True 830.466667 2244 90.085667 1101 3842 3 chr2D.!!$R5 2741
8 TraesCS2B01G583400 chr2D 628623384 628623935 551 False 610.000000 610 86.667000 990 1541 1 chr2D.!!$F2 551
9 TraesCS2B01G583400 chr2D 628643101 628643685 584 False 475.000000 475 81.619000 954 1537 1 chr2D.!!$F3 583
10 TraesCS2B01G583400 chr2D 51089081 51089839 758 True 451.000000 451 78.424000 2254 2985 1 chr2D.!!$R1 731
11 TraesCS2B01G583400 chr2D 627954651 627957934 3283 False 429.500000 1358 91.175000 1769 4483 6 chr2D.!!$F4 2714
12 TraesCS2B01G583400 chr2D 628995591 628996131 540 True 344.000000 344 79.121000 1668 2182 1 chr2D.!!$R4 514
13 TraesCS2B01G583400 chr2A 758525410 758527019 1609 True 766.250000 1439 86.848500 630 2165 2 chr2A.!!$R4 1535
14 TraesCS2B01G583400 chr2A 758408583 758415313 6730 False 698.428571 2089 90.675143 172 4483 7 chr2A.!!$F2 4311
15 TraesCS2B01G583400 chr2A 758596582 758597382 800 False 579.000000 579 80.494000 990 1763 1 chr2A.!!$F1 773
16 TraesCS2B01G583400 chr2A 758512527 758516869 4342 True 481.860000 1949 91.478200 1297 4284 5 chr2A.!!$R3 2987
17 TraesCS2B01G583400 chr1A 551671892 551672564 672 False 573.000000 573 82.514000 964 1636 1 chr1A.!!$F1 672

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
39 40 0.033796 ATGCACCAGGTCCCATCAAG 60.034 55.0 0.00 0.0 0.00 3.02 F
101 102 0.107654 AGCCCTACGGTGCAGATTTC 60.108 55.0 0.00 0.0 0.00 2.17 F
104 105 0.108329 CCTACGGTGCAGATTTCGGT 60.108 55.0 0.00 0.0 0.00 4.69 F
2028 4750 0.110688 CGCTGGACGTCAACACATTG 60.111 55.0 18.91 0.0 36.87 2.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1928 4629 0.321346 TTGGAGCAGCGAGAATGTCA 59.679 50.0 0.00 0.0 0.00 3.58 R
2074 4802 0.240945 GACGGTGGGAAGTTGCAATG 59.759 55.0 0.59 0.0 0.00 2.82 R
2106 5312 0.032952 TACCACTTGACACTGTCGGC 59.967 55.0 4.71 0.0 34.95 5.54 R
3973 7908 0.192566 TATACCATCCGCCCCTCCTT 59.807 55.0 0.00 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.364318 ACTCCATCTCCGAGGGTG 57.636 61.111 0.00 0.00 34.82 4.61
18 19 1.697910 ACTCCATCTCCGAGGGTGA 59.302 57.895 3.97 0.00 34.82 4.02
19 20 0.041238 ACTCCATCTCCGAGGGTGAA 59.959 55.000 3.97 0.00 34.82 3.18
20 21 1.195115 CTCCATCTCCGAGGGTGAAA 58.805 55.000 0.00 0.00 34.82 2.69
21 22 1.765314 CTCCATCTCCGAGGGTGAAAT 59.235 52.381 0.00 0.00 34.82 2.17
22 23 1.486310 TCCATCTCCGAGGGTGAAATG 59.514 52.381 0.00 0.00 34.82 2.32
23 24 1.303309 CATCTCCGAGGGTGAAATGC 58.697 55.000 0.00 0.00 0.00 3.56
24 25 0.911769 ATCTCCGAGGGTGAAATGCA 59.088 50.000 0.00 0.00 0.00 3.96
25 26 0.036388 TCTCCGAGGGTGAAATGCAC 60.036 55.000 0.00 0.00 46.98 4.57
33 34 2.267045 GTGAAATGCACCAGGTCCC 58.733 57.895 0.00 0.00 41.78 4.46
34 35 0.539438 GTGAAATGCACCAGGTCCCA 60.539 55.000 0.00 0.00 41.78 4.37
35 36 0.409092 TGAAATGCACCAGGTCCCAT 59.591 50.000 0.00 0.00 0.00 4.00
36 37 1.106285 GAAATGCACCAGGTCCCATC 58.894 55.000 0.00 0.00 0.00 3.51
37 38 0.409092 AAATGCACCAGGTCCCATCA 59.591 50.000 0.00 0.00 0.00 3.07
38 39 0.409092 AATGCACCAGGTCCCATCAA 59.591 50.000 0.00 0.00 0.00 2.57
39 40 0.033796 ATGCACCAGGTCCCATCAAG 60.034 55.000 0.00 0.00 0.00 3.02
40 41 1.380302 GCACCAGGTCCCATCAAGT 59.620 57.895 0.00 0.00 0.00 3.16
41 42 0.251341 GCACCAGGTCCCATCAAGTT 60.251 55.000 0.00 0.00 0.00 2.66
42 43 1.823250 GCACCAGGTCCCATCAAGTTT 60.823 52.381 0.00 0.00 0.00 2.66
43 44 2.554344 GCACCAGGTCCCATCAAGTTTA 60.554 50.000 0.00 0.00 0.00 2.01
44 45 3.877735 GCACCAGGTCCCATCAAGTTTAT 60.878 47.826 0.00 0.00 0.00 1.40
45 46 3.696051 CACCAGGTCCCATCAAGTTTATG 59.304 47.826 0.00 0.00 0.00 1.90
46 47 3.333680 ACCAGGTCCCATCAAGTTTATGT 59.666 43.478 0.00 0.00 0.00 2.29
47 48 4.538490 ACCAGGTCCCATCAAGTTTATGTA 59.462 41.667 0.00 0.00 0.00 2.29
48 49 5.126067 CCAGGTCCCATCAAGTTTATGTAG 58.874 45.833 0.00 0.00 0.00 2.74
49 50 5.104527 CCAGGTCCCATCAAGTTTATGTAGA 60.105 44.000 0.00 0.00 0.00 2.59
50 51 5.817816 CAGGTCCCATCAAGTTTATGTAGAC 59.182 44.000 8.12 8.12 0.00 2.59
51 52 4.809426 GGTCCCATCAAGTTTATGTAGACG 59.191 45.833 9.56 0.00 31.43 4.18
52 53 4.270325 GTCCCATCAAGTTTATGTAGACGC 59.730 45.833 0.00 0.00 0.00 5.19
53 54 4.161565 TCCCATCAAGTTTATGTAGACGCT 59.838 41.667 0.00 0.00 0.00 5.07
54 55 5.361571 TCCCATCAAGTTTATGTAGACGCTA 59.638 40.000 0.00 0.00 0.00 4.26
55 56 6.046593 CCCATCAAGTTTATGTAGACGCTAA 58.953 40.000 0.00 0.00 0.00 3.09
56 57 6.537301 CCCATCAAGTTTATGTAGACGCTAAA 59.463 38.462 0.00 0.00 0.00 1.85
57 58 7.226720 CCCATCAAGTTTATGTAGACGCTAAAT 59.773 37.037 0.00 0.00 0.00 1.40
58 59 8.064222 CCATCAAGTTTATGTAGACGCTAAATG 58.936 37.037 0.00 0.00 0.00 2.32
59 60 8.604035 CATCAAGTTTATGTAGACGCTAAATGT 58.396 33.333 1.25 0.00 0.00 2.71
60 61 9.811995 ATCAAGTTTATGTAGACGCTAAATGTA 57.188 29.630 1.25 0.00 0.00 2.29
61 62 9.642327 TCAAGTTTATGTAGACGCTAAATGTAA 57.358 29.630 1.25 0.00 0.00 2.41
65 66 9.155053 GTTTATGTAGACGCTAAATGTAATTGC 57.845 33.333 0.00 0.00 36.10 3.56
66 67 6.918892 ATGTAGACGCTAAATGTAATTGCA 57.081 33.333 0.00 0.00 36.10 4.08
67 68 6.918892 TGTAGACGCTAAATGTAATTGCAT 57.081 33.333 2.84 2.84 36.10 3.96
68 69 6.943981 TGTAGACGCTAAATGTAATTGCATC 58.056 36.000 9.60 0.00 36.10 3.91
69 70 6.761242 TGTAGACGCTAAATGTAATTGCATCT 59.239 34.615 9.60 4.39 36.10 2.90
70 71 6.292389 AGACGCTAAATGTAATTGCATCTC 57.708 37.500 9.60 0.00 36.10 2.75
71 72 5.817296 AGACGCTAAATGTAATTGCATCTCA 59.183 36.000 9.60 0.00 36.10 3.27
72 73 5.810525 ACGCTAAATGTAATTGCATCTCAC 58.189 37.500 9.60 0.37 36.10 3.51
73 74 5.586243 ACGCTAAATGTAATTGCATCTCACT 59.414 36.000 9.60 0.00 36.10 3.41
74 75 6.132056 CGCTAAATGTAATTGCATCTCACTC 58.868 40.000 9.60 0.00 36.10 3.51
75 76 6.132056 GCTAAATGTAATTGCATCTCACTCG 58.868 40.000 9.60 0.00 36.10 4.18
76 77 4.542662 AATGTAATTGCATCTCACTCGC 57.457 40.909 9.60 0.00 33.44 5.03
77 78 2.279741 TGTAATTGCATCTCACTCGCC 58.720 47.619 0.00 0.00 0.00 5.54
78 79 2.279741 GTAATTGCATCTCACTCGCCA 58.720 47.619 0.00 0.00 0.00 5.69
79 80 2.048444 AATTGCATCTCACTCGCCAT 57.952 45.000 0.00 0.00 0.00 4.40
80 81 2.916702 ATTGCATCTCACTCGCCATA 57.083 45.000 0.00 0.00 0.00 2.74
81 82 1.939974 TTGCATCTCACTCGCCATAC 58.060 50.000 0.00 0.00 0.00 2.39
82 83 0.823460 TGCATCTCACTCGCCATACA 59.177 50.000 0.00 0.00 0.00 2.29
83 84 1.202452 TGCATCTCACTCGCCATACAG 60.202 52.381 0.00 0.00 0.00 2.74
84 85 1.495878 CATCTCACTCGCCATACAGC 58.504 55.000 0.00 0.00 0.00 4.40
85 86 0.390860 ATCTCACTCGCCATACAGCC 59.609 55.000 0.00 0.00 0.00 4.85
86 87 1.227380 CTCACTCGCCATACAGCCC 60.227 63.158 0.00 0.00 0.00 5.19
87 88 1.680522 CTCACTCGCCATACAGCCCT 61.681 60.000 0.00 0.00 0.00 5.19
88 89 0.396556 TCACTCGCCATACAGCCCTA 60.397 55.000 0.00 0.00 0.00 3.53
89 90 0.249489 CACTCGCCATACAGCCCTAC 60.249 60.000 0.00 0.00 0.00 3.18
90 91 1.007271 CTCGCCATACAGCCCTACG 60.007 63.158 0.00 0.00 0.00 3.51
91 92 2.029073 CGCCATACAGCCCTACGG 59.971 66.667 0.00 0.00 0.00 4.02
92 93 2.792947 CGCCATACAGCCCTACGGT 61.793 63.158 0.00 0.00 0.00 4.83
93 94 1.227556 GCCATACAGCCCTACGGTG 60.228 63.158 0.00 0.00 45.85 4.94
94 95 1.227556 CCATACAGCCCTACGGTGC 60.228 63.158 0.00 0.00 44.15 5.01
95 96 1.520192 CATACAGCCCTACGGTGCA 59.480 57.895 0.00 0.00 44.15 4.57
96 97 0.530650 CATACAGCCCTACGGTGCAG 60.531 60.000 0.00 0.00 44.15 4.41
97 98 0.686441 ATACAGCCCTACGGTGCAGA 60.686 55.000 0.00 0.00 44.15 4.26
98 99 0.686441 TACAGCCCTACGGTGCAGAT 60.686 55.000 0.00 0.00 44.15 2.90
99 100 1.221840 CAGCCCTACGGTGCAGATT 59.778 57.895 0.00 0.00 32.20 2.40
100 101 0.392998 CAGCCCTACGGTGCAGATTT 60.393 55.000 0.00 0.00 32.20 2.17
101 102 0.107654 AGCCCTACGGTGCAGATTTC 60.108 55.000 0.00 0.00 0.00 2.17
102 103 1.429148 GCCCTACGGTGCAGATTTCG 61.429 60.000 0.00 0.00 0.00 3.46
103 104 0.810031 CCCTACGGTGCAGATTTCGG 60.810 60.000 0.00 0.00 0.00 4.30
104 105 0.108329 CCTACGGTGCAGATTTCGGT 60.108 55.000 0.00 0.00 0.00 4.69
105 106 0.999406 CTACGGTGCAGATTTCGGTG 59.001 55.000 0.00 0.00 0.00 4.94
106 107 0.319083 TACGGTGCAGATTTCGGTGT 59.681 50.000 0.00 0.00 0.00 4.16
107 108 0.534203 ACGGTGCAGATTTCGGTGTT 60.534 50.000 0.00 0.00 0.00 3.32
108 109 0.591170 CGGTGCAGATTTCGGTGTTT 59.409 50.000 0.00 0.00 0.00 2.83
109 110 1.399727 CGGTGCAGATTTCGGTGTTTC 60.400 52.381 0.00 0.00 0.00 2.78
110 111 1.880027 GGTGCAGATTTCGGTGTTTCT 59.120 47.619 0.00 0.00 0.00 2.52
111 112 2.293399 GGTGCAGATTTCGGTGTTTCTT 59.707 45.455 0.00 0.00 0.00 2.52
112 113 3.243401 GGTGCAGATTTCGGTGTTTCTTT 60.243 43.478 0.00 0.00 0.00 2.52
113 114 3.975035 GTGCAGATTTCGGTGTTTCTTTC 59.025 43.478 0.00 0.00 0.00 2.62
114 115 3.882888 TGCAGATTTCGGTGTTTCTTTCT 59.117 39.130 0.00 0.00 0.00 2.52
115 116 4.024048 TGCAGATTTCGGTGTTTCTTTCTC 60.024 41.667 0.00 0.00 0.00 2.87
116 117 4.613850 GCAGATTTCGGTGTTTCTTTCTCC 60.614 45.833 0.00 0.00 0.00 3.71
117 118 4.072839 AGATTTCGGTGTTTCTTTCTCCC 58.927 43.478 0.00 0.00 0.00 4.30
118 119 3.570912 TTTCGGTGTTTCTTTCTCCCT 57.429 42.857 0.00 0.00 0.00 4.20
119 120 2.833631 TCGGTGTTTCTTTCTCCCTC 57.166 50.000 0.00 0.00 0.00 4.30
120 121 1.000506 TCGGTGTTTCTTTCTCCCTCG 59.999 52.381 0.00 0.00 0.00 4.63
121 122 1.270147 CGGTGTTTCTTTCTCCCTCGT 60.270 52.381 0.00 0.00 0.00 4.18
122 123 2.805657 CGGTGTTTCTTTCTCCCTCGTT 60.806 50.000 0.00 0.00 0.00 3.85
123 124 3.211865 GGTGTTTCTTTCTCCCTCGTTT 58.788 45.455 0.00 0.00 0.00 3.60
124 125 4.383173 GGTGTTTCTTTCTCCCTCGTTTA 58.617 43.478 0.00 0.00 0.00 2.01
125 126 4.818005 GGTGTTTCTTTCTCCCTCGTTTAA 59.182 41.667 0.00 0.00 0.00 1.52
126 127 5.277683 GGTGTTTCTTTCTCCCTCGTTTAAC 60.278 44.000 0.00 0.00 0.00 2.01
127 128 4.818005 TGTTTCTTTCTCCCTCGTTTAACC 59.182 41.667 0.00 0.00 0.00 2.85
128 129 4.693042 TTCTTTCTCCCTCGTTTAACCA 57.307 40.909 0.00 0.00 0.00 3.67
129 130 4.693042 TCTTTCTCCCTCGTTTAACCAA 57.307 40.909 0.00 0.00 0.00 3.67
130 131 4.638304 TCTTTCTCCCTCGTTTAACCAAG 58.362 43.478 0.00 0.00 0.00 3.61
131 132 4.102054 TCTTTCTCCCTCGTTTAACCAAGT 59.898 41.667 0.00 0.00 0.00 3.16
132 133 5.305128 TCTTTCTCCCTCGTTTAACCAAGTA 59.695 40.000 0.00 0.00 0.00 2.24
133 134 5.549742 TTCTCCCTCGTTTAACCAAGTAA 57.450 39.130 0.00 0.00 0.00 2.24
134 135 4.886579 TCTCCCTCGTTTAACCAAGTAAC 58.113 43.478 0.00 0.00 0.00 2.50
135 136 3.999001 CTCCCTCGTTTAACCAAGTAACC 59.001 47.826 0.00 0.00 0.00 2.85
136 137 3.076621 CCCTCGTTTAACCAAGTAACCC 58.923 50.000 0.00 0.00 0.00 4.11
137 138 3.244665 CCCTCGTTTAACCAAGTAACCCT 60.245 47.826 0.00 0.00 0.00 4.34
138 139 4.392047 CCTCGTTTAACCAAGTAACCCTT 58.608 43.478 0.00 0.00 0.00 3.95
139 140 5.512921 CCCTCGTTTAACCAAGTAACCCTTA 60.513 44.000 0.00 0.00 0.00 2.69
140 141 5.997129 CCTCGTTTAACCAAGTAACCCTTAA 59.003 40.000 0.00 0.00 0.00 1.85
141 142 6.486320 CCTCGTTTAACCAAGTAACCCTTAAA 59.514 38.462 0.00 0.00 0.00 1.52
142 143 7.258022 TCGTTTAACCAAGTAACCCTTAAAC 57.742 36.000 0.00 0.00 35.41 2.01
143 144 6.135400 CGTTTAACCAAGTAACCCTTAAACG 58.865 40.000 15.29 15.29 46.10 3.60
144 145 5.687770 TTAACCAAGTAACCCTTAAACGC 57.312 39.130 0.00 0.00 0.00 4.84
145 146 3.497103 ACCAAGTAACCCTTAAACGCT 57.503 42.857 0.00 0.00 0.00 5.07
146 147 3.143728 ACCAAGTAACCCTTAAACGCTG 58.856 45.455 0.00 0.00 0.00 5.18
147 148 2.095415 CCAAGTAACCCTTAAACGCTGC 60.095 50.000 0.00 0.00 0.00 5.25
148 149 2.550606 CAAGTAACCCTTAAACGCTGCA 59.449 45.455 0.00 0.00 0.00 4.41
149 150 2.423577 AGTAACCCTTAAACGCTGCAG 58.576 47.619 10.11 10.11 0.00 4.41
150 151 1.135774 GTAACCCTTAAACGCTGCAGC 60.136 52.381 29.12 29.12 37.78 5.25
151 152 1.524008 AACCCTTAAACGCTGCAGCC 61.524 55.000 32.07 15.05 37.91 4.85
152 153 1.971167 CCCTTAAACGCTGCAGCCA 60.971 57.895 32.07 12.70 37.91 4.75
153 154 1.315257 CCCTTAAACGCTGCAGCCAT 61.315 55.000 32.07 18.49 37.91 4.40
154 155 1.378531 CCTTAAACGCTGCAGCCATA 58.621 50.000 32.07 19.14 37.91 2.74
155 156 1.742831 CCTTAAACGCTGCAGCCATAA 59.257 47.619 32.07 24.12 37.91 1.90
156 157 2.477863 CCTTAAACGCTGCAGCCATAAC 60.478 50.000 32.07 4.82 37.91 1.89
157 158 1.814793 TAAACGCTGCAGCCATAACA 58.185 45.000 32.07 10.48 37.91 2.41
158 159 1.176527 AAACGCTGCAGCCATAACAT 58.823 45.000 32.07 9.35 37.91 2.71
159 160 1.176527 AACGCTGCAGCCATAACATT 58.823 45.000 32.07 12.33 37.91 2.71
160 161 1.176527 ACGCTGCAGCCATAACATTT 58.823 45.000 32.07 3.08 37.91 2.32
161 162 1.133025 ACGCTGCAGCCATAACATTTC 59.867 47.619 32.07 1.12 37.91 2.17
162 163 1.534595 CGCTGCAGCCATAACATTTCC 60.535 52.381 32.07 0.90 37.91 3.13
163 164 1.753073 GCTGCAGCCATAACATTTCCT 59.247 47.619 28.76 0.00 34.31 3.36
164 165 2.223665 GCTGCAGCCATAACATTTCCTC 60.224 50.000 28.76 0.00 34.31 3.71
165 166 3.285484 CTGCAGCCATAACATTTCCTCT 58.715 45.455 0.00 0.00 0.00 3.69
166 167 4.454678 CTGCAGCCATAACATTTCCTCTA 58.545 43.478 0.00 0.00 0.00 2.43
167 168 4.454678 TGCAGCCATAACATTTCCTCTAG 58.545 43.478 0.00 0.00 0.00 2.43
168 169 3.817647 GCAGCCATAACATTTCCTCTAGG 59.182 47.826 0.00 0.00 0.00 3.02
169 170 4.444876 GCAGCCATAACATTTCCTCTAGGA 60.445 45.833 0.00 0.00 43.73 2.94
170 171 5.303971 CAGCCATAACATTTCCTCTAGGAG 58.696 45.833 0.00 0.00 46.36 3.69
195 196 3.542712 TCAAGCTCGTTCATTTTCTGC 57.457 42.857 0.00 0.00 0.00 4.26
220 221 7.704899 GCTTAATTAACAACCTTTCGGCATTAT 59.295 33.333 0.00 0.00 0.00 1.28
227 228 5.010617 ACAACCTTTCGGCATTATCTTGTTT 59.989 36.000 0.00 0.00 0.00 2.83
236 237 5.164061 CGGCATTATCTTGTTTCAAACTTGC 60.164 40.000 1.10 0.36 0.00 4.01
239 240 7.274250 GGCATTATCTTGTTTCAAACTTGCTAG 59.726 37.037 1.10 0.00 0.00 3.42
242 243 5.424121 TCTTGTTTCAAACTTGCTAGCTC 57.576 39.130 17.23 0.00 0.00 4.09
247 248 5.208503 GTTTCAAACTTGCTAGCTCAGTTC 58.791 41.667 24.49 13.34 0.00 3.01
251 252 0.997932 CTTGCTAGCTCAGTTCGCAG 59.002 55.000 17.23 0.00 31.63 5.18
276 277 3.067601 TCTCAATATCACGCGGTACATGT 59.932 43.478 12.47 2.69 0.00 3.21
278 279 3.120041 CAATATCACGCGGTACATGTCA 58.880 45.455 12.47 0.00 0.00 3.58
279 280 2.943449 TATCACGCGGTACATGTCAA 57.057 45.000 12.47 0.00 0.00 3.18
299 300 3.443099 AAAGTTTTTGCTGCTCCACTC 57.557 42.857 0.00 0.00 0.00 3.51
328 329 5.242434 TCACGTCATAGTTAAGCAACCAAT 58.758 37.500 0.00 0.00 35.05 3.16
446 448 2.501723 ACAAGTTCATATGCTCTCGGGT 59.498 45.455 0.00 0.00 0.00 5.28
448 450 1.414181 AGTTCATATGCTCTCGGGTGG 59.586 52.381 0.00 0.00 0.00 4.61
450 452 1.040646 TCATATGCTCTCGGGTGGAC 58.959 55.000 0.00 0.00 0.00 4.02
457 459 1.672145 GCTCTCGGGTGGACAGTAAAC 60.672 57.143 0.00 0.00 0.00 2.01
462 464 1.337823 CGGGTGGACAGTAAACTCAGG 60.338 57.143 0.00 0.00 0.00 3.86
468 470 5.008712 GGTGGACAGTAAACTCAGGAAAAAG 59.991 44.000 0.00 0.00 0.00 2.27
477 479 8.311109 AGTAAACTCAGGAAAAAGAAGCAAAAA 58.689 29.630 0.00 0.00 0.00 1.94
504 506 6.944557 AAAAAGTCTGCAAGTTTTGTACAC 57.055 33.333 0.00 0.00 39.15 2.90
530 532 2.765689 TGGACAAGTTTTCCATGGGT 57.234 45.000 13.02 0.00 38.28 4.51
538 540 2.503356 AGTTTTCCATGGGTGTGCAAAA 59.497 40.909 13.02 7.28 0.00 2.44
541 543 3.853355 TTCCATGGGTGTGCAAAAATT 57.147 38.095 13.02 0.00 0.00 1.82
546 548 0.943673 GGGTGTGCAAAAATTGTGGC 59.056 50.000 0.00 0.00 0.00 5.01
572 574 1.069358 GACATCGGAGGATCTTGGGAC 59.931 57.143 0.00 0.00 33.73 4.46
590 592 8.077386 TCTTGGGACGTAAATAACAAAATCAAC 58.923 33.333 0.00 0.00 0.00 3.18
615 617 6.073819 CGGTCCAAAATCAAAAATCTTGAACC 60.074 38.462 0.00 0.00 31.55 3.62
626 628 9.369904 TCAAAAATCTTGAACCTTTCTCAAAAG 57.630 29.630 0.00 0.00 41.36 2.27
656 658 6.790232 TTTTGGTCAAGAACTCCTTCATTT 57.210 33.333 0.00 0.00 31.42 2.32
710 716 4.160252 AGAAAACTTGTGCATCTTTGGTGT 59.840 37.500 0.00 0.00 0.00 4.16
718 724 6.343716 TGTGCATCTTTGGTGTCAATAAAT 57.656 33.333 0.00 0.00 32.28 1.40
721 727 7.812191 TGTGCATCTTTGGTGTCAATAAATTAC 59.188 33.333 0.00 0.00 32.28 1.89
723 729 7.812191 TGCATCTTTGGTGTCAATAAATTACAC 59.188 33.333 0.61 0.61 42.17 2.90
725 731 9.128107 CATCTTTGGTGTCAATAAATTACACAC 57.872 33.333 9.91 10.61 44.18 3.82
726 732 8.226819 TCTTTGGTGTCAATAAATTACACACA 57.773 30.769 9.91 4.05 44.18 3.72
727 733 8.132362 TCTTTGGTGTCAATAAATTACACACAC 58.868 33.333 9.91 5.31 44.18 3.82
729 735 6.730175 TGGTGTCAATAAATTACACACACAC 58.270 36.000 9.91 4.89 44.18 3.82
730 736 6.318900 TGGTGTCAATAAATTACACACACACA 59.681 34.615 9.91 3.97 44.18 3.72
731 737 6.635239 GGTGTCAATAAATTACACACACACAC 59.365 38.462 9.91 0.00 44.18 3.82
732 738 7.190191 GTGTCAATAAATTACACACACACACA 58.810 34.615 4.00 0.00 42.40 3.72
733 739 7.165154 GTGTCAATAAATTACACACACACACAC 59.835 37.037 4.00 0.00 42.40 3.82
735 741 7.165154 GTCAATAAATTACACACACACACACAC 59.835 37.037 0.00 0.00 0.00 3.82
736 742 6.685527 ATAAATTACACACACACACACACA 57.314 33.333 0.00 0.00 0.00 3.72
737 743 4.349663 AATTACACACACACACACACAC 57.650 40.909 0.00 0.00 0.00 3.82
739 745 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
740 746 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
741 747 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
742 748 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
743 749 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
744 750 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
745 751 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
746 752 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
747 753 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
748 754 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
749 755 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
750 756 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
751 757 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
752 758 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
753 759 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
754 760 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
755 761 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
756 762 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
757 763 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
758 764 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
759 765 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
762 768 2.675348 CACACACACACACACACACATA 59.325 45.455 0.00 0.00 0.00 2.29
764 770 4.509600 CACACACACACACACACACATATA 59.490 41.667 0.00 0.00 0.00 0.86
766 772 6.367422 CACACACACACACACACACATATATA 59.633 38.462 0.00 0.00 0.00 0.86
768 774 8.254508 ACACACACACACACACACATATATATA 58.745 33.333 0.00 0.00 0.00 0.86
769 775 9.260002 CACACACACACACACACATATATATAT 57.740 33.333 0.00 0.00 0.00 0.86
811 817 4.685169 AATTTCAGTATTGTGCACCGAG 57.315 40.909 15.69 0.00 0.00 4.63
827 833 0.512085 CGAGACGCCGTCCTCTATAC 59.488 60.000 14.60 0.00 32.18 1.47
830 836 2.617774 GAGACGCCGTCCTCTATACTTT 59.382 50.000 14.60 0.00 32.18 2.66
908 962 1.153509 GTACCGTGCGTGGGCTTAT 60.154 57.895 0.00 0.00 40.82 1.73
931 985 2.114051 CCAGCAGCACACACACACA 61.114 57.895 0.00 0.00 0.00 3.72
933 987 1.377072 AGCAGCACACACACACACA 60.377 52.632 0.00 0.00 0.00 3.72
935 989 1.921045 GCAGCACACACACACACACA 61.921 55.000 0.00 0.00 0.00 3.72
936 990 0.179192 CAGCACACACACACACACAC 60.179 55.000 0.00 0.00 0.00 3.82
937 991 0.605050 AGCACACACACACACACACA 60.605 50.000 0.00 0.00 0.00 3.72
939 993 0.167908 CACACACACACACACACACC 59.832 55.000 0.00 0.00 0.00 4.16
940 994 1.295357 ACACACACACACACACACCG 61.295 55.000 0.00 0.00 0.00 4.94
942 996 0.739462 ACACACACACACACACCGAG 60.739 55.000 0.00 0.00 0.00 4.63
943 997 1.813753 ACACACACACACACCGAGC 60.814 57.895 0.00 0.00 0.00 5.03
944 998 1.813337 CACACACACACACCGAGCA 60.813 57.895 0.00 0.00 0.00 4.26
945 999 1.813753 ACACACACACACCGAGCAC 60.814 57.895 0.00 0.00 0.00 4.40
946 1000 1.521457 CACACACACACCGAGCACT 60.521 57.895 0.00 0.00 0.00 4.40
947 1001 1.521457 ACACACACACCGAGCACTG 60.521 57.895 0.00 0.00 0.00 3.66
948 1002 1.227234 CACACACACCGAGCACTGA 60.227 57.895 0.00 0.00 0.00 3.41
949 1003 1.068083 ACACACACCGAGCACTGAG 59.932 57.895 0.00 0.00 0.00 3.35
1156 1276 1.915078 CTTCCGCAAGATCCACCCCT 61.915 60.000 0.00 0.00 43.02 4.79
1396 1891 1.280133 CCCTCTTCAAGCAGATGGTGA 59.720 52.381 0.00 0.00 0.00 4.02
1564 2114 1.152963 GGGACATCATTCCGGGTGG 60.153 63.158 0.00 0.00 36.38 4.61
1750 2327 3.603532 GTGCTTGACATTCAGAGGATGA 58.396 45.455 0.00 0.00 35.62 2.92
1791 2368 2.048603 GCCCTGTGCCAGACATTCC 61.049 63.158 4.00 0.00 32.74 3.01
1928 4629 1.489649 CCAGTGGCAGATGGAGAAGAT 59.510 52.381 12.33 0.00 39.02 2.40
1943 4644 2.168106 AGAAGATGACATTCTCGCTGCT 59.832 45.455 0.00 0.00 31.29 4.24
1944 4645 2.222007 AGATGACATTCTCGCTGCTC 57.778 50.000 0.00 0.00 0.00 4.26
1946 4647 0.538584 ATGACATTCTCGCTGCTCCA 59.461 50.000 0.00 0.00 0.00 3.86
1998 4720 1.270358 GGAAGCTCGTTGGTCAAGTCT 60.270 52.381 0.00 0.00 0.00 3.24
2028 4750 0.110688 CGCTGGACGTCAACACATTG 60.111 55.000 18.91 0.00 36.87 2.82
2052 4774 2.435059 GAGAGGGTGTGCGCTTCC 60.435 66.667 9.73 8.27 38.06 3.46
2074 4802 1.791662 CCCAAACCGTCGCACATAC 59.208 57.895 0.00 0.00 0.00 2.39
2100 4828 2.088950 ACTTCCCACCGTCGTTATTG 57.911 50.000 0.00 0.00 0.00 1.90
2129 5336 2.143925 GACAGTGTCAAGTGGTAAGCC 58.856 52.381 18.54 0.00 32.09 4.35
2135 5342 1.807142 GTCAAGTGGTAAGCCTTCTGC 59.193 52.381 0.00 0.00 41.71 4.26
2197 5408 5.106948 ACACAGCTTACAGTTCAAATGATCG 60.107 40.000 0.00 0.00 0.00 3.69
2398 5656 2.606725 CGCACAAAAAGCAAATTCACCA 59.393 40.909 0.00 0.00 0.00 4.17
2454 5723 0.530288 AACTTTGTTTGCCTGCACGT 59.470 45.000 0.00 0.00 0.00 4.49
2468 5737 3.131577 CCTGCACGTAGATGTAACCCTTA 59.868 47.826 0.00 0.00 0.00 2.69
2538 5808 6.918626 TGCCATTTGTCTTTCGAATTTATCA 58.081 32.000 0.00 0.00 0.00 2.15
2656 6102 4.382254 CCATTGGTGCTTTCTATGTGCAAT 60.382 41.667 0.00 0.00 38.50 3.56
2657 6103 3.853831 TGGTGCTTTCTATGTGCAATG 57.146 42.857 0.00 0.00 38.50 2.82
2692 6143 6.553100 TCTCCTTTAATCATCTTCCTCTCCTC 59.447 42.308 0.00 0.00 0.00 3.71
2726 6178 6.431234 TGCTTCCTCCTTTAATTCTTTCTCAC 59.569 38.462 0.00 0.00 0.00 3.51
2745 6197 1.791103 CGCACGCCCTTCCTTTGAAA 61.791 55.000 0.00 0.00 0.00 2.69
2748 6200 1.029681 ACGCCCTTCCTTTGAAACAC 58.970 50.000 0.00 0.00 0.00 3.32
2749 6201 1.028905 CGCCCTTCCTTTGAAACACA 58.971 50.000 0.00 0.00 0.00 3.72
2812 6297 4.891168 TGCTGCATGATTGAGACCATTAAT 59.109 37.500 0.00 0.00 0.00 1.40
2813 6298 5.361571 TGCTGCATGATTGAGACCATTAATT 59.638 36.000 0.00 0.00 0.00 1.40
2816 6301 7.594015 GCTGCATGATTGAGACCATTAATTAAG 59.406 37.037 3.94 0.00 0.00 1.85
2818 6303 9.358406 TGCATGATTGAGACCATTAATTAAGAT 57.642 29.630 3.94 0.00 0.00 2.40
2908 6394 9.023962 TCAATTCATAAGTTACCTGCAATTTCT 57.976 29.630 0.00 0.00 0.00 2.52
2973 6491 4.494091 ACCATTCGAATCTCAAGGTCAT 57.506 40.909 7.92 0.00 0.00 3.06
3143 6795 1.753470 CAATGCAGCCAAACCCCAA 59.247 52.632 0.00 0.00 0.00 4.12
3148 6800 2.203684 AGCCAAACCCCAAGCTGG 60.204 61.111 0.00 0.00 37.25 4.85
3195 6847 2.152016 GGGTGCCTGAACTACAAGAAC 58.848 52.381 0.00 0.00 0.00 3.01
3207 6859 1.057851 ACAAGAACCCGACCCTGGAA 61.058 55.000 0.00 0.00 0.00 3.53
3230 6882 3.470567 GAAGTGCACGTCCTCGCG 61.471 66.667 20.53 0.00 41.18 5.87
3485 7138 4.467082 TGCTTGCCTTTTTGGATGTGATAT 59.533 37.500 0.00 0.00 38.35 1.63
3507 7354 4.135747 AGCTAGTCTCAGATCCTTTTGC 57.864 45.455 0.00 0.00 0.00 3.68
3540 7390 0.179023 TGCCTGATGTGTTGTGCTGA 60.179 50.000 0.00 0.00 0.00 4.26
3562 7412 1.945662 CTTGGTTTGTGCTGCGTGC 60.946 57.895 0.00 0.00 43.25 5.34
3566 7416 2.515757 TTTGTGCTGCGTGCTGGA 60.516 55.556 0.00 0.00 43.37 3.86
3567 7417 2.117779 TTTGTGCTGCGTGCTGGAA 61.118 52.632 0.00 0.00 43.37 3.53
3568 7418 2.062361 TTTGTGCTGCGTGCTGGAAG 62.062 55.000 0.00 0.00 43.37 3.46
3569 7419 3.730761 GTGCTGCGTGCTGGAAGG 61.731 66.667 0.00 0.00 43.37 3.46
3570 7420 3.939939 TGCTGCGTGCTGGAAGGA 61.940 61.111 0.00 0.00 43.37 3.36
3571 7421 2.669569 GCTGCGTGCTGGAAGGAA 60.670 61.111 0.89 0.00 34.45 3.36
3572 7422 2.042831 GCTGCGTGCTGGAAGGAAT 61.043 57.895 0.89 0.00 34.45 3.01
3573 7423 1.589716 GCTGCGTGCTGGAAGGAATT 61.590 55.000 0.89 0.00 34.45 2.17
3574 7424 1.737838 CTGCGTGCTGGAAGGAATTA 58.262 50.000 0.00 0.00 34.45 1.40
3575 7425 2.292267 CTGCGTGCTGGAAGGAATTAT 58.708 47.619 0.00 0.00 34.45 1.28
3576 7426 2.684881 CTGCGTGCTGGAAGGAATTATT 59.315 45.455 0.00 0.00 34.45 1.40
3577 7427 3.876914 CTGCGTGCTGGAAGGAATTATTA 59.123 43.478 0.00 0.00 34.45 0.98
3580 7505 6.058833 TGCGTGCTGGAAGGAATTATTATTA 58.941 36.000 0.00 0.00 34.45 0.98
3622 7547 1.732259 GTTGCGAAATGACTGATCGGT 59.268 47.619 6.97 6.97 37.08 4.69
3677 7607 2.029838 AGCGCTGGAAGGAATTAGTG 57.970 50.000 10.39 0.00 0.00 2.74
3973 7908 7.338449 ACTTGGTAAAGTTTCAAACTAGAGCAA 59.662 33.333 19.91 19.91 44.47 3.91
3974 7909 7.633193 TGGTAAAGTTTCAAACTAGAGCAAA 57.367 32.000 2.38 0.00 41.91 3.68
3981 7916 2.305927 TCAAACTAGAGCAAAGGAGGGG 59.694 50.000 0.00 0.00 0.00 4.79
3982 7917 0.621082 AACTAGAGCAAAGGAGGGGC 59.379 55.000 0.00 0.00 0.00 5.80
4022 7984 1.000607 TCAGTCAACCGTTTCGAGAGG 60.001 52.381 1.98 1.98 0.00 3.69
4069 8031 6.849085 CTCATCTGAGTTACCAGGCTATAT 57.151 41.667 0.00 0.00 37.40 0.86
4070 8032 7.946381 CTCATCTGAGTTACCAGGCTATATA 57.054 40.000 0.00 0.00 37.40 0.86
4071 8033 8.532186 CTCATCTGAGTTACCAGGCTATATAT 57.468 38.462 0.00 0.00 37.40 0.86
4072 8034 9.634021 CTCATCTGAGTTACCAGGCTATATATA 57.366 37.037 0.00 0.00 37.40 0.86
4084 8046 8.709308 ACCAGGCTATATATAATGGATGTTCTC 58.291 37.037 18.51 0.00 0.00 2.87
4085 8047 8.932610 CCAGGCTATATATAATGGATGTTCTCT 58.067 37.037 10.71 0.00 0.00 3.10
4100 8092 3.141398 GTTCTCTGTGCAATCTCCAACA 58.859 45.455 0.00 0.00 0.00 3.33
4116 8108 2.420687 CCAACATACAGAGAAGAGGGCC 60.421 54.545 0.00 0.00 0.00 5.80
4117 8109 1.115467 ACATACAGAGAAGAGGGCCG 58.885 55.000 0.00 0.00 0.00 6.13
4124 8116 1.671901 GAGAAGAGGGCCGGACTGAG 61.672 65.000 7.57 0.00 0.00 3.35
4147 8139 4.631813 GCTTGATGTTCAGAAGTAACCGAT 59.368 41.667 0.00 0.00 0.00 4.18
4155 8147 5.562506 TCAGAAGTAACCGATGACAGTAG 57.437 43.478 0.00 0.00 0.00 2.57
4165 8157 3.308053 CCGATGACAGTAGCATGAAGTTG 59.692 47.826 0.00 0.00 0.00 3.16
4171 8163 4.910195 ACAGTAGCATGAAGTTGATCCAA 58.090 39.130 0.00 0.00 0.00 3.53
4172 8164 5.503927 ACAGTAGCATGAAGTTGATCCAAT 58.496 37.500 0.00 0.00 0.00 3.16
4197 8189 5.620738 ATGGATGAGTACATAGCAACACT 57.379 39.130 0.00 0.00 36.82 3.55
4203 8195 4.021104 TGAGTACATAGCAACACTGAAGCT 60.021 41.667 0.00 0.00 42.14 3.74
4210 8202 2.157738 GCAACACTGAAGCTGGATTCT 58.842 47.619 0.00 0.00 0.00 2.40
4213 8205 4.791974 CAACACTGAAGCTGGATTCTTTC 58.208 43.478 0.00 0.00 0.00 2.62
4247 8239 4.811555 TCAAGTACAAGTCATGCAACAC 57.188 40.909 0.00 0.00 0.00 3.32
4287 8285 1.674962 GAGTTGCAGGCAGATCATTCC 59.325 52.381 0.00 0.00 0.00 3.01
4296 8294 0.883814 CAGATCATTCCCAGCCTCGC 60.884 60.000 0.00 0.00 0.00 5.03
4298 8296 4.838152 TCATTCCCAGCCTCGCGC 62.838 66.667 0.00 0.00 37.98 6.86
4376 8654 6.817184 AGATACGGCATATAACAGAACAAGT 58.183 36.000 0.00 0.00 0.00 3.16
4379 8657 5.974108 ACGGCATATAACAGAACAAGTACT 58.026 37.500 0.00 0.00 0.00 2.73
4440 9436 6.201806 GCTGACACATGTTCATCTATTAGGTC 59.798 42.308 0.00 0.00 0.00 3.85
4443 9439 8.977412 TGACACATGTTCATCTATTAGGTCTTA 58.023 33.333 0.00 0.00 0.00 2.10
4444 9440 9.817809 GACACATGTTCATCTATTAGGTCTTAA 57.182 33.333 0.00 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.041238 TTCACCCTCGGAGATGGAGT 59.959 55.000 6.58 0.00 45.53 3.85
1 2 1.195115 TTTCACCCTCGGAGATGGAG 58.805 55.000 6.58 0.00 45.53 3.86
4 5 1.303309 GCATTTCACCCTCGGAGATG 58.697 55.000 6.58 4.79 33.89 2.90
5 6 0.911769 TGCATTTCACCCTCGGAGAT 59.088 50.000 6.58 0.00 33.89 2.75
6 7 0.036388 GTGCATTTCACCCTCGGAGA 60.036 55.000 6.58 0.00 39.79 3.71
7 8 2.471255 GTGCATTTCACCCTCGGAG 58.529 57.895 0.00 0.00 39.79 4.63
8 9 4.713946 GTGCATTTCACCCTCGGA 57.286 55.556 0.00 0.00 39.79 4.55
15 16 0.539438 TGGGACCTGGTGCATTTCAC 60.539 55.000 20.33 1.96 44.90 3.18
16 17 0.409092 ATGGGACCTGGTGCATTTCA 59.591 50.000 20.33 8.94 0.00 2.69
17 18 1.106285 GATGGGACCTGGTGCATTTC 58.894 55.000 20.33 9.30 0.00 2.17
18 19 0.409092 TGATGGGACCTGGTGCATTT 59.591 50.000 20.33 3.70 0.00 2.32
19 20 0.409092 TTGATGGGACCTGGTGCATT 59.591 50.000 20.33 6.33 0.00 3.56
20 21 0.033796 CTTGATGGGACCTGGTGCAT 60.034 55.000 20.33 11.23 0.00 3.96
21 22 1.379916 CTTGATGGGACCTGGTGCA 59.620 57.895 20.33 6.80 0.00 4.57
22 23 0.251341 AACTTGATGGGACCTGGTGC 60.251 55.000 10.21 10.21 0.00 5.01
23 24 2.292828 AAACTTGATGGGACCTGGTG 57.707 50.000 2.82 0.00 0.00 4.17
24 25 3.333680 ACATAAACTTGATGGGACCTGGT 59.666 43.478 0.00 0.00 0.00 4.00
25 26 3.968265 ACATAAACTTGATGGGACCTGG 58.032 45.455 0.00 0.00 0.00 4.45
26 27 5.817816 GTCTACATAAACTTGATGGGACCTG 59.182 44.000 0.00 0.00 31.19 4.00
27 28 5.395324 CGTCTACATAAACTTGATGGGACCT 60.395 44.000 0.00 0.00 32.48 3.85
28 29 4.809426 CGTCTACATAAACTTGATGGGACC 59.191 45.833 8.02 0.00 32.48 4.46
29 30 4.270325 GCGTCTACATAAACTTGATGGGAC 59.730 45.833 5.22 5.22 32.63 4.46
30 31 4.161565 AGCGTCTACATAAACTTGATGGGA 59.838 41.667 0.00 0.00 0.00 4.37
31 32 4.442706 AGCGTCTACATAAACTTGATGGG 58.557 43.478 0.00 0.00 0.00 4.00
32 33 7.534085 TTTAGCGTCTACATAAACTTGATGG 57.466 36.000 0.00 0.00 0.00 3.51
33 34 8.604035 ACATTTAGCGTCTACATAAACTTGATG 58.396 33.333 0.00 0.00 0.00 3.07
34 35 8.718102 ACATTTAGCGTCTACATAAACTTGAT 57.282 30.769 0.00 0.00 0.00 2.57
35 36 9.642327 TTACATTTAGCGTCTACATAAACTTGA 57.358 29.630 0.00 0.00 0.00 3.02
39 40 9.155053 GCAATTACATTTAGCGTCTACATAAAC 57.845 33.333 0.00 0.00 0.00 2.01
40 41 8.884726 TGCAATTACATTTAGCGTCTACATAAA 58.115 29.630 0.00 0.00 0.00 1.40
41 42 8.426881 TGCAATTACATTTAGCGTCTACATAA 57.573 30.769 0.00 0.00 0.00 1.90
42 43 8.601845 ATGCAATTACATTTAGCGTCTACATA 57.398 30.769 0.00 0.00 0.00 2.29
43 44 6.918892 TGCAATTACATTTAGCGTCTACAT 57.081 33.333 0.00 0.00 0.00 2.29
44 45 6.761242 AGATGCAATTACATTTAGCGTCTACA 59.239 34.615 5.72 0.00 46.41 2.74
45 46 7.178712 AGATGCAATTACATTTAGCGTCTAC 57.821 36.000 5.72 0.00 46.41 2.59
48 49 5.904080 GTGAGATGCAATTACATTTAGCGTC 59.096 40.000 0.00 0.00 40.55 5.19
49 50 5.586243 AGTGAGATGCAATTACATTTAGCGT 59.414 36.000 0.00 0.00 0.00 5.07
50 51 6.052840 AGTGAGATGCAATTACATTTAGCG 57.947 37.500 0.00 0.00 0.00 4.26
51 52 6.132056 CGAGTGAGATGCAATTACATTTAGC 58.868 40.000 0.00 0.00 0.00 3.09
52 53 6.132056 GCGAGTGAGATGCAATTACATTTAG 58.868 40.000 0.00 0.00 0.00 1.85
53 54 5.007626 GGCGAGTGAGATGCAATTACATTTA 59.992 40.000 0.00 0.00 0.00 1.40
54 55 4.201950 GGCGAGTGAGATGCAATTACATTT 60.202 41.667 0.00 0.00 0.00 2.32
55 56 3.313526 GGCGAGTGAGATGCAATTACATT 59.686 43.478 0.00 0.00 0.00 2.71
56 57 2.874701 GGCGAGTGAGATGCAATTACAT 59.125 45.455 0.00 0.00 0.00 2.29
57 58 2.279741 GGCGAGTGAGATGCAATTACA 58.720 47.619 0.00 0.00 0.00 2.41
58 59 2.279741 TGGCGAGTGAGATGCAATTAC 58.720 47.619 0.00 0.00 0.00 1.89
59 60 2.689553 TGGCGAGTGAGATGCAATTA 57.310 45.000 0.00 0.00 0.00 1.40
60 61 2.048444 ATGGCGAGTGAGATGCAATT 57.952 45.000 0.00 0.00 0.00 2.32
61 62 2.158914 TGTATGGCGAGTGAGATGCAAT 60.159 45.455 0.00 0.00 0.00 3.56
62 63 1.206849 TGTATGGCGAGTGAGATGCAA 59.793 47.619 0.00 0.00 0.00 4.08
63 64 0.823460 TGTATGGCGAGTGAGATGCA 59.177 50.000 0.00 0.00 0.00 3.96
64 65 1.495878 CTGTATGGCGAGTGAGATGC 58.504 55.000 0.00 0.00 0.00 3.91
65 66 1.495878 GCTGTATGGCGAGTGAGATG 58.504 55.000 0.00 0.00 0.00 2.90
66 67 0.390860 GGCTGTATGGCGAGTGAGAT 59.609 55.000 0.00 0.00 0.00 2.75
67 68 1.676678 GGGCTGTATGGCGAGTGAGA 61.677 60.000 0.00 0.00 42.84 3.27
68 69 1.227380 GGGCTGTATGGCGAGTGAG 60.227 63.158 0.00 0.00 42.84 3.51
69 70 0.396556 TAGGGCTGTATGGCGAGTGA 60.397 55.000 0.00 0.00 42.84 3.41
70 71 0.249489 GTAGGGCTGTATGGCGAGTG 60.249 60.000 0.00 0.00 42.84 3.51
71 72 1.735376 CGTAGGGCTGTATGGCGAGT 61.735 60.000 0.00 0.00 42.84 4.18
72 73 1.007271 CGTAGGGCTGTATGGCGAG 60.007 63.158 0.00 0.00 42.84 5.03
73 74 3.125607 CGTAGGGCTGTATGGCGA 58.874 61.111 0.00 0.00 42.84 5.54
86 87 0.999406 CACCGAAATCTGCACCGTAG 59.001 55.000 0.00 0.00 0.00 3.51
87 88 0.319083 ACACCGAAATCTGCACCGTA 59.681 50.000 0.00 0.00 0.00 4.02
88 89 0.534203 AACACCGAAATCTGCACCGT 60.534 50.000 0.00 0.00 0.00 4.83
89 90 0.591170 AAACACCGAAATCTGCACCG 59.409 50.000 0.00 0.00 0.00 4.94
90 91 1.880027 AGAAACACCGAAATCTGCACC 59.120 47.619 0.00 0.00 0.00 5.01
91 92 3.626028 AAGAAACACCGAAATCTGCAC 57.374 42.857 0.00 0.00 0.00 4.57
92 93 3.882888 AGAAAGAAACACCGAAATCTGCA 59.117 39.130 0.00 0.00 0.00 4.41
93 94 4.467735 GAGAAAGAAACACCGAAATCTGC 58.532 43.478 0.00 0.00 0.00 4.26
94 95 4.083271 GGGAGAAAGAAACACCGAAATCTG 60.083 45.833 0.00 0.00 0.00 2.90
95 96 4.072839 GGGAGAAAGAAACACCGAAATCT 58.927 43.478 0.00 0.00 0.00 2.40
96 97 4.072839 AGGGAGAAAGAAACACCGAAATC 58.927 43.478 0.00 0.00 0.00 2.17
97 98 4.072839 GAGGGAGAAAGAAACACCGAAAT 58.927 43.478 0.00 0.00 0.00 2.17
98 99 3.473625 GAGGGAGAAAGAAACACCGAAA 58.526 45.455 0.00 0.00 0.00 3.46
99 100 2.547218 CGAGGGAGAAAGAAACACCGAA 60.547 50.000 0.00 0.00 0.00 4.30
100 101 1.000506 CGAGGGAGAAAGAAACACCGA 59.999 52.381 0.00 0.00 0.00 4.69
101 102 1.270147 ACGAGGGAGAAAGAAACACCG 60.270 52.381 0.00 0.00 0.00 4.94
102 103 2.545537 ACGAGGGAGAAAGAAACACC 57.454 50.000 0.00 0.00 0.00 4.16
103 104 5.277683 GGTTAAACGAGGGAGAAAGAAACAC 60.278 44.000 0.00 0.00 0.00 3.32
104 105 4.818005 GGTTAAACGAGGGAGAAAGAAACA 59.182 41.667 0.00 0.00 0.00 2.83
105 106 4.818005 TGGTTAAACGAGGGAGAAAGAAAC 59.182 41.667 0.00 0.00 0.00 2.78
106 107 5.038651 TGGTTAAACGAGGGAGAAAGAAA 57.961 39.130 0.00 0.00 0.00 2.52
107 108 4.693042 TGGTTAAACGAGGGAGAAAGAA 57.307 40.909 0.00 0.00 0.00 2.52
108 109 4.102054 ACTTGGTTAAACGAGGGAGAAAGA 59.898 41.667 12.50 0.00 0.00 2.52
109 110 4.386711 ACTTGGTTAAACGAGGGAGAAAG 58.613 43.478 12.50 0.00 0.00 2.62
110 111 4.426736 ACTTGGTTAAACGAGGGAGAAA 57.573 40.909 12.50 0.00 0.00 2.52
111 112 5.299949 GTTACTTGGTTAAACGAGGGAGAA 58.700 41.667 12.50 0.00 0.00 2.87
112 113 4.262592 GGTTACTTGGTTAAACGAGGGAGA 60.263 45.833 12.50 0.00 0.00 3.71
113 114 3.999001 GGTTACTTGGTTAAACGAGGGAG 59.001 47.826 12.50 0.00 0.00 4.30
114 115 3.244526 GGGTTACTTGGTTAAACGAGGGA 60.245 47.826 12.50 0.00 0.00 4.20
115 116 3.076621 GGGTTACTTGGTTAAACGAGGG 58.923 50.000 12.50 0.00 0.00 4.30
116 117 4.011966 AGGGTTACTTGGTTAAACGAGG 57.988 45.455 12.50 0.00 0.00 4.63
117 118 7.355017 GTTTAAGGGTTACTTGGTTAAACGAG 58.645 38.462 6.19 6.19 40.37 4.18
118 119 7.258022 GTTTAAGGGTTACTTGGTTAAACGA 57.742 36.000 0.00 0.00 40.37 3.85
120 121 5.914635 GCGTTTAAGGGTTACTTGGTTAAAC 59.085 40.000 0.00 0.00 40.37 2.01
121 122 5.827267 AGCGTTTAAGGGTTACTTGGTTAAA 59.173 36.000 0.00 0.00 40.37 1.52
122 123 5.239087 CAGCGTTTAAGGGTTACTTGGTTAA 59.761 40.000 0.00 0.00 40.37 2.01
123 124 4.756135 CAGCGTTTAAGGGTTACTTGGTTA 59.244 41.667 0.00 0.00 40.37 2.85
124 125 3.566742 CAGCGTTTAAGGGTTACTTGGTT 59.433 43.478 0.00 0.00 40.37 3.67
125 126 3.143728 CAGCGTTTAAGGGTTACTTGGT 58.856 45.455 0.00 0.00 40.37 3.67
126 127 2.095415 GCAGCGTTTAAGGGTTACTTGG 60.095 50.000 0.00 0.00 40.37 3.61
127 128 2.550606 TGCAGCGTTTAAGGGTTACTTG 59.449 45.455 0.00 0.00 40.37 3.16
128 129 2.812011 CTGCAGCGTTTAAGGGTTACTT 59.188 45.455 0.00 0.00 43.28 2.24
129 130 2.423577 CTGCAGCGTTTAAGGGTTACT 58.576 47.619 0.00 0.00 0.00 2.24
130 131 1.135774 GCTGCAGCGTTTAAGGGTTAC 60.136 52.381 25.23 0.00 0.00 2.50
131 132 1.161843 GCTGCAGCGTTTAAGGGTTA 58.838 50.000 25.23 0.00 0.00 2.85
132 133 1.524008 GGCTGCAGCGTTTAAGGGTT 61.524 55.000 31.19 0.00 43.26 4.11
133 134 1.971695 GGCTGCAGCGTTTAAGGGT 60.972 57.895 31.19 0.00 43.26 4.34
134 135 1.315257 ATGGCTGCAGCGTTTAAGGG 61.315 55.000 31.19 0.00 43.26 3.95
135 136 1.378531 TATGGCTGCAGCGTTTAAGG 58.621 50.000 31.19 0.00 43.26 2.69
136 137 2.161410 TGTTATGGCTGCAGCGTTTAAG 59.839 45.455 31.19 0.00 43.26 1.85
137 138 2.155279 TGTTATGGCTGCAGCGTTTAA 58.845 42.857 31.19 23.27 43.26 1.52
138 139 1.814793 TGTTATGGCTGCAGCGTTTA 58.185 45.000 31.19 19.17 43.26 2.01
139 140 1.176527 ATGTTATGGCTGCAGCGTTT 58.823 45.000 31.19 20.18 43.26 3.60
140 141 1.176527 AATGTTATGGCTGCAGCGTT 58.823 45.000 31.19 22.64 43.26 4.84
141 142 1.133025 GAAATGTTATGGCTGCAGCGT 59.867 47.619 31.19 23.88 43.26 5.07
142 143 1.534595 GGAAATGTTATGGCTGCAGCG 60.535 52.381 31.19 0.00 43.26 5.18
143 144 1.753073 AGGAAATGTTATGGCTGCAGC 59.247 47.619 30.88 30.88 41.14 5.25
144 145 3.285484 AGAGGAAATGTTATGGCTGCAG 58.715 45.455 10.11 10.11 0.00 4.41
145 146 3.370840 AGAGGAAATGTTATGGCTGCA 57.629 42.857 0.50 0.00 0.00 4.41
146 147 3.817647 CCTAGAGGAAATGTTATGGCTGC 59.182 47.826 0.00 0.00 37.39 5.25
147 148 5.296151 TCCTAGAGGAAATGTTATGGCTG 57.704 43.478 0.00 0.00 42.18 4.85
148 149 4.202409 GCTCCTAGAGGAAATGTTATGGCT 60.202 45.833 0.00 0.00 44.91 4.75
149 150 4.068599 GCTCCTAGAGGAAATGTTATGGC 58.931 47.826 0.00 0.00 44.91 4.40
150 151 5.070981 TGAGCTCCTAGAGGAAATGTTATGG 59.929 44.000 12.15 0.00 44.91 2.74
151 152 6.166984 TGAGCTCCTAGAGGAAATGTTATG 57.833 41.667 12.15 0.00 44.91 1.90
152 153 6.556495 TGATGAGCTCCTAGAGGAAATGTTAT 59.444 38.462 12.15 0.00 44.91 1.89
153 154 5.899547 TGATGAGCTCCTAGAGGAAATGTTA 59.100 40.000 12.15 0.00 44.91 2.41
154 155 4.718774 TGATGAGCTCCTAGAGGAAATGTT 59.281 41.667 12.15 0.00 44.91 2.71
155 156 4.293494 TGATGAGCTCCTAGAGGAAATGT 58.707 43.478 12.15 0.00 44.91 2.71
156 157 4.952071 TGATGAGCTCCTAGAGGAAATG 57.048 45.455 12.15 0.00 44.91 2.32
157 158 5.549742 CTTGATGAGCTCCTAGAGGAAAT 57.450 43.478 12.15 0.00 44.91 2.17
212 213 5.164061 GCAAGTTTGAAACAAGATAATGCCG 60.164 40.000 11.02 0.00 0.00 5.69
220 221 4.881273 TGAGCTAGCAAGTTTGAAACAAGA 59.119 37.500 18.83 0.00 0.00 3.02
227 228 3.059884 CGAACTGAGCTAGCAAGTTTGA 58.940 45.455 29.52 2.97 0.00 2.69
236 237 1.135141 AGAAGCTGCGAACTGAGCTAG 60.135 52.381 0.00 0.00 44.97 3.42
239 240 0.668706 TGAGAAGCTGCGAACTGAGC 60.669 55.000 0.00 0.00 35.28 4.26
242 243 3.867493 TGATATTGAGAAGCTGCGAACTG 59.133 43.478 0.00 0.00 0.00 3.16
247 248 1.070975 GCGTGATATTGAGAAGCTGCG 60.071 52.381 0.00 0.00 0.00 5.18
251 252 1.571919 ACCGCGTGATATTGAGAAGC 58.428 50.000 4.92 0.00 0.00 3.86
253 254 3.786516 TGTACCGCGTGATATTGAGAA 57.213 42.857 4.92 0.00 0.00 2.87
278 279 3.430790 GGAGTGGAGCAGCAAAAACTTTT 60.431 43.478 0.00 0.00 0.00 2.27
279 280 2.101415 GGAGTGGAGCAGCAAAAACTTT 59.899 45.455 0.00 0.00 0.00 2.66
299 300 4.051922 GCTTAACTATGACGTGATGAGGG 58.948 47.826 0.00 0.00 0.00 4.30
376 378 9.191479 AGTATAGCACTTCACTAGTCATTTACT 57.809 33.333 0.00 0.00 36.76 2.24
385 387 7.204496 ACCGATAAGTATAGCACTTCACTAG 57.796 40.000 0.00 0.00 44.48 2.57
412 414 7.388776 GCATATGAACTTGTAATCAGCTATGGA 59.611 37.037 6.97 0.00 0.00 3.41
430 432 1.412710 GTCCACCCGAGAGCATATGAA 59.587 52.381 6.97 0.00 0.00 2.57
435 437 0.324368 TACTGTCCACCCGAGAGCAT 60.324 55.000 0.00 0.00 35.22 3.79
446 448 5.996644 TCTTTTTCCTGAGTTTACTGTCCA 58.003 37.500 0.00 0.00 0.00 4.02
448 450 6.038271 TGCTTCTTTTTCCTGAGTTTACTGTC 59.962 38.462 0.00 0.00 0.00 3.51
450 452 6.377327 TGCTTCTTTTTCCTGAGTTTACTG 57.623 37.500 0.00 0.00 0.00 2.74
477 479 9.646427 TGTACAAAACTTGCAGACTTTTTAATT 57.354 25.926 0.00 0.00 0.00 1.40
480 482 7.594714 TGTGTACAAAACTTGCAGACTTTTTA 58.405 30.769 0.00 0.00 0.00 1.52
485 487 5.637006 TTTGTGTACAAAACTTGCAGACT 57.363 34.783 7.66 0.00 42.26 3.24
513 515 2.545742 GCACACCCATGGAAAACTTGTC 60.546 50.000 15.22 0.00 0.00 3.18
524 526 2.548904 CCACAATTTTTGCACACCCATG 59.451 45.455 0.00 0.00 0.00 3.66
530 532 2.522836 ATCGCCACAATTTTTGCACA 57.477 40.000 0.00 0.00 0.00 4.57
538 540 2.159393 CCGATGTCAAATCGCCACAATT 60.159 45.455 0.00 0.00 39.95 2.32
541 543 0.036858 TCCGATGTCAAATCGCCACA 60.037 50.000 0.00 0.00 39.95 4.17
546 548 3.377346 AGATCCTCCGATGTCAAATCG 57.623 47.619 0.00 0.00 40.86 3.34
572 574 6.372185 TGGACCGTTGATTTTGTTATTTACG 58.628 36.000 0.00 0.00 0.00 3.18
590 592 6.073819 GGTTCAAGATTTTTGATTTTGGACCG 60.074 38.462 4.56 0.00 37.58 4.79
632 634 6.790232 AATGAAGGAGTTCTTGACCAAAAA 57.210 33.333 0.00 0.00 35.50 1.94
656 658 5.111989 TGCAAATTTTCGTGGTGATTTGAA 58.888 33.333 10.76 0.00 40.26 2.69
710 716 7.148239 TGTGTGTGTGTGTGTGTAATTTATTGA 60.148 33.333 0.00 0.00 0.00 2.57
718 724 2.480802 GTGTGTGTGTGTGTGTGTGTAA 59.519 45.455 0.00 0.00 0.00 2.41
721 727 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
723 729 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
725 731 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
726 732 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
727 733 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
729 735 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
730 736 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
731 737 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
732 738 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
733 739 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
735 741 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
736 742 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
737 743 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
739 745 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
740 746 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
741 747 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
742 748 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
743 749 5.861222 ATATATGTGTGTGTGTGTGTGTG 57.139 39.130 0.00 0.00 0.00 3.82
797 803 1.693083 GGCGTCTCGGTGCACAATAC 61.693 60.000 20.43 9.74 0.00 1.89
807 813 0.602106 TATAGAGGACGGCGTCTCGG 60.602 60.000 35.42 0.00 39.71 4.63
811 817 3.433513 AAAAGTATAGAGGACGGCGTC 57.566 47.619 30.72 30.72 0.00 5.19
875 908 1.606224 CGGTACTAGTTTGTTGCGGGT 60.606 52.381 0.00 0.00 0.00 5.28
908 962 1.827789 GTGTGTGCTGCTGGGGAAA 60.828 57.895 0.00 0.00 0.00 3.13
931 985 1.068083 CTCAGTGCTCGGTGTGTGT 59.932 57.895 0.00 0.00 0.00 3.72
933 987 2.029666 GCTCAGTGCTCGGTGTGT 59.970 61.111 0.00 0.00 38.95 3.72
942 996 1.596203 TGTGTGCTCAGCTCAGTGC 60.596 57.895 0.46 0.00 43.29 4.40
943 997 0.531311 TGTGTGTGCTCAGCTCAGTG 60.531 55.000 0.46 0.00 32.70 3.66
944 998 0.249784 CTGTGTGTGCTCAGCTCAGT 60.250 55.000 0.46 0.00 32.70 3.41
945 999 2.529925 CTGTGTGTGCTCAGCTCAG 58.470 57.895 0.46 0.00 32.70 3.35
946 1000 4.764896 CTGTGTGTGCTCAGCTCA 57.235 55.556 0.00 0.00 30.82 4.26
1387 1882 1.091771 GGGTCGCACATCACCATCTG 61.092 60.000 0.00 0.00 33.91 2.90
1564 2114 0.321919 TGAAGCAGCACCATCCAGAC 60.322 55.000 0.00 0.00 0.00 3.51
1750 2327 1.299976 GGTCGGCCATGGAGAACTT 59.700 57.895 18.40 0.00 34.09 2.66
1799 2376 1.907807 GCCTCCACAATGGCCACAA 60.908 57.895 8.16 0.00 43.11 3.33
1834 2411 2.243810 GGGTTTAGGCACAAACATCCA 58.756 47.619 14.24 0.00 39.65 3.41
1928 4629 0.321346 TTGGAGCAGCGAGAATGTCA 59.679 50.000 0.00 0.00 0.00 3.58
1943 4644 2.121963 AGTGCCTCCCCACTTGGA 60.122 61.111 0.00 0.00 43.19 3.53
1998 4720 1.525077 GTCCAGCGTGAAACCACCA 60.525 57.895 0.00 0.00 0.00 4.17
2028 4750 1.963338 GCACACCCTCTCACACTGC 60.963 63.158 0.00 0.00 0.00 4.40
2052 4774 3.283684 TGCGACGGTTTGGGCAAG 61.284 61.111 0.00 0.00 31.50 4.01
2074 4802 0.240945 GACGGTGGGAAGTTGCAATG 59.759 55.000 0.59 0.00 0.00 2.82
2106 5312 0.032952 TACCACTTGACACTGTCGGC 59.967 55.000 4.71 0.00 34.95 5.54
2135 5342 1.542492 AGCAGGTTTCTGGCATTCAG 58.458 50.000 0.00 0.00 44.68 3.02
2242 5460 3.396260 TCAAAGGAAAGGAGGTACGTG 57.604 47.619 0.00 0.00 0.00 4.49
2243 5461 4.426736 TTTCAAAGGAAAGGAGGTACGT 57.573 40.909 0.00 0.00 38.07 3.57
2244 5462 4.395231 GGATTTCAAAGGAAAGGAGGTACG 59.605 45.833 0.00 0.00 45.58 3.67
2245 5463 4.705507 GGGATTTCAAAGGAAAGGAGGTAC 59.294 45.833 0.00 0.00 45.58 3.34
2398 5656 9.477484 CAAAAAGTACTGATGTAAGTCACTACT 57.523 33.333 0.00 0.00 37.65 2.57
2422 5691 5.278022 GCAAACAAAGTTGGGTTTTTGACAA 60.278 36.000 8.30 0.00 37.63 3.18
2454 5723 5.968676 AGGTGCAATAAGGGTTACATCTA 57.031 39.130 0.00 0.00 0.00 1.98
2468 5737 0.542702 CCAACAGGGGAAGGTGCAAT 60.543 55.000 0.00 0.00 0.00 3.56
2510 5779 1.266718 TCGAAAGACAAATGGCAGCAC 59.733 47.619 0.00 0.00 33.31 4.40
2511 5780 1.603456 TCGAAAGACAAATGGCAGCA 58.397 45.000 0.00 0.00 33.31 4.41
2512 5781 2.704725 TTCGAAAGACAAATGGCAGC 57.295 45.000 0.00 0.00 41.84 5.25
2521 5790 8.335532 ACCAAAGATGATAAATTCGAAAGACA 57.664 30.769 0.00 0.00 41.84 3.41
2692 6143 2.557920 AGGAGGAAGCACAGACAAAG 57.442 50.000 0.00 0.00 0.00 2.77
2726 6178 1.791103 TTTCAAAGGAAGGGCGTGCG 61.791 55.000 0.00 0.00 33.82 5.34
2745 6197 7.769044 AGTACTCTAATTTGTGTGTTTCTGTGT 59.231 33.333 5.10 0.00 0.00 3.72
2748 6200 9.256477 TGTAGTACTCTAATTTGTGTGTTTCTG 57.744 33.333 0.00 0.00 0.00 3.02
2749 6201 9.257651 GTGTAGTACTCTAATTTGTGTGTTTCT 57.742 33.333 0.00 2.38 0.00 2.52
2840 6325 6.925165 CCAGCAATTCTGTACTCACAAAATTT 59.075 34.615 0.00 0.00 33.91 1.82
2871 6357 5.425630 ACTTATGAATTGAGAACCCGGTAC 58.574 41.667 0.00 0.00 0.00 3.34
3195 6847 4.760047 CACGCTTCCAGGGTCGGG 62.760 72.222 0.00 0.00 39.54 5.14
3236 6888 1.606601 GGGGTTTGGAGCTTGGTCC 60.607 63.158 11.53 11.53 37.10 4.46
3238 6890 0.469892 CAAGGGGTTTGGAGCTTGGT 60.470 55.000 0.00 0.00 32.95 3.67
3356 7008 3.955101 CCCTCTCGAGCTACGCCG 61.955 72.222 7.81 0.00 42.26 6.46
3443 7096 2.381941 GCCCCTCCAGCTGAAGGAT 61.382 63.158 22.52 0.00 33.99 3.24
3485 7138 4.711846 TGCAAAAGGATCTGAGACTAGCTA 59.288 41.667 0.00 0.00 0.00 3.32
3507 7354 5.347635 CACATCAGGCAAATGAATGAACTTG 59.652 40.000 6.18 0.00 31.76 3.16
3540 7390 0.877071 CGCAGCACAAACCAAGAGAT 59.123 50.000 0.00 0.00 0.00 2.75
3566 7416 9.543783 GGACGACAAGAGTAATAATAATTCCTT 57.456 33.333 0.00 0.00 0.00 3.36
3567 7417 8.925338 AGGACGACAAGAGTAATAATAATTCCT 58.075 33.333 0.00 0.00 0.00 3.36
3568 7418 8.979574 CAGGACGACAAGAGTAATAATAATTCC 58.020 37.037 0.00 0.00 0.00 3.01
3569 7419 9.530633 ACAGGACGACAAGAGTAATAATAATTC 57.469 33.333 0.00 0.00 0.00 2.17
3570 7420 9.314321 CACAGGACGACAAGAGTAATAATAATT 57.686 33.333 0.00 0.00 0.00 1.40
3571 7421 7.438459 GCACAGGACGACAAGAGTAATAATAAT 59.562 37.037 0.00 0.00 0.00 1.28
3572 7422 6.755141 GCACAGGACGACAAGAGTAATAATAA 59.245 38.462 0.00 0.00 0.00 1.40
3573 7423 6.127563 TGCACAGGACGACAAGAGTAATAATA 60.128 38.462 0.00 0.00 0.00 0.98
3574 7424 5.109903 GCACAGGACGACAAGAGTAATAAT 58.890 41.667 0.00 0.00 0.00 1.28
3575 7425 4.021807 TGCACAGGACGACAAGAGTAATAA 60.022 41.667 0.00 0.00 0.00 1.40
3576 7426 3.508402 TGCACAGGACGACAAGAGTAATA 59.492 43.478 0.00 0.00 0.00 0.98
3577 7427 2.299013 TGCACAGGACGACAAGAGTAAT 59.701 45.455 0.00 0.00 0.00 1.89
3580 7505 0.464036 TTGCACAGGACGACAAGAGT 59.536 50.000 0.00 0.00 0.00 3.24
3609 7534 3.055819 ACTTGCACTACCGATCAGTCATT 60.056 43.478 0.00 0.00 0.00 2.57
3702 7633 2.299013 CTGTACAGGCAGGACTAACACA 59.701 50.000 15.49 0.00 33.11 3.72
3947 7882 6.826741 TGCTCTAGTTTGAAACTTTACCAAGT 59.173 34.615 16.49 0.00 45.89 3.16
3948 7883 7.259290 TGCTCTAGTTTGAAACTTTACCAAG 57.741 36.000 16.49 6.43 42.81 3.61
3949 7884 7.633193 TTGCTCTAGTTTGAAACTTTACCAA 57.367 32.000 16.49 11.62 42.81 3.67
3950 7885 7.201785 CCTTTGCTCTAGTTTGAAACTTTACCA 60.202 37.037 16.49 6.50 42.81 3.25
3951 7886 7.012989 TCCTTTGCTCTAGTTTGAAACTTTACC 59.987 37.037 16.49 4.06 42.81 2.85
3952 7887 7.927048 TCCTTTGCTCTAGTTTGAAACTTTAC 58.073 34.615 16.49 4.74 42.81 2.01
3957 7892 4.216472 CCCTCCTTTGCTCTAGTTTGAAAC 59.784 45.833 0.00 0.00 0.00 2.78
3973 7908 0.192566 TATACCATCCGCCCCTCCTT 59.807 55.000 0.00 0.00 0.00 3.36
3974 7909 0.192566 TTATACCATCCGCCCCTCCT 59.807 55.000 0.00 0.00 0.00 3.69
3981 7916 5.730550 TGAATACCATCTTATACCATCCGC 58.269 41.667 0.00 0.00 0.00 5.54
3982 7917 6.936279 ACTGAATACCATCTTATACCATCCG 58.064 40.000 0.00 0.00 0.00 4.18
4068 8030 8.162085 AGATTGCACAGAGAACATCCATTATAT 58.838 33.333 0.00 0.00 0.00 0.86
4069 8031 7.512130 AGATTGCACAGAGAACATCCATTATA 58.488 34.615 0.00 0.00 0.00 0.98
4070 8032 6.363065 AGATTGCACAGAGAACATCCATTAT 58.637 36.000 0.00 0.00 0.00 1.28
4071 8033 5.748402 AGATTGCACAGAGAACATCCATTA 58.252 37.500 0.00 0.00 0.00 1.90
4072 8034 4.597004 AGATTGCACAGAGAACATCCATT 58.403 39.130 0.00 0.00 0.00 3.16
4084 8046 4.256110 TCTGTATGTTGGAGATTGCACAG 58.744 43.478 0.00 0.00 34.78 3.66
4085 8047 4.020307 TCTCTGTATGTTGGAGATTGCACA 60.020 41.667 0.00 0.00 32.09 4.57
4100 8092 0.261991 TCCGGCCCTCTTCTCTGTAT 59.738 55.000 0.00 0.00 0.00 2.29
4116 8108 1.998315 CTGAACATCAAGCTCAGTCCG 59.002 52.381 0.00 0.00 36.04 4.79
4117 8109 3.325293 TCTGAACATCAAGCTCAGTCC 57.675 47.619 0.00 0.00 40.53 3.85
4124 8116 3.994392 TCGGTTACTTCTGAACATCAAGC 59.006 43.478 0.00 0.00 0.00 4.01
4147 8139 4.020307 TGGATCAACTTCATGCTACTGTCA 60.020 41.667 0.00 0.00 0.00 3.58
4171 8163 9.040259 AGTGTTGCTATGTACTCATCCATATAT 57.960 33.333 0.00 0.00 35.70 0.86
4172 8164 8.306761 CAGTGTTGCTATGTACTCATCCATATA 58.693 37.037 0.00 0.00 35.70 0.86
4197 8189 7.765695 ACAAATAAGAAAGAATCCAGCTTCA 57.234 32.000 0.00 0.00 0.00 3.02
4247 8239 6.718454 ACTCATTCTCTGTTCTGAATTTCG 57.282 37.500 0.00 0.00 31.35 3.46
4336 8614 8.073467 TGCCGTATCTATGATATCCATGTTAA 57.927 34.615 0.00 0.00 36.71 2.01
4358 8636 6.480320 CAGGAGTACTTGTTCTGTTATATGCC 59.520 42.308 0.00 0.00 0.00 4.40
4376 8654 7.660208 AGCTTTCGAAAAGAATTTACAGGAGTA 59.340 33.333 12.41 0.00 37.28 2.59
4379 8657 6.877611 AGCTTTCGAAAAGAATTTACAGGA 57.122 33.333 12.41 0.00 37.28 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.