Multiple sequence alignment - TraesCS2B01G583200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G583200 chr2B 100.000 3708 0 0 1 3708 770676690 770680397 0.000000e+00 6848
1 TraesCS2B01G583200 chr2B 88.801 634 40 9 21 651 748356560 748355955 0.000000e+00 749
2 TraesCS2B01G583200 chr2B 85.649 655 45 20 1 651 748203151 748202542 0.000000e+00 643
3 TraesCS2B01G583200 chr2A 93.706 1859 56 22 943 2787 758394526 758396337 0.000000e+00 2728
4 TraesCS2B01G583200 chr2A 94.702 604 29 3 3106 3708 758396458 758397059 0.000000e+00 935
5 TraesCS2B01G583200 chr2A 89.160 738 41 19 11 742 758393619 758394323 0.000000e+00 883
6 TraesCS2B01G583200 chr2A 96.032 126 4 1 2819 2944 758396335 758396459 1.750000e-48 204
7 TraesCS2B01G583200 chr2A 75.775 355 46 23 1848 2194 758395062 758395384 3.860000e-30 143
8 TraesCS2B01G583200 chr2D 86.407 1795 110 62 1 1727 627917236 627918964 0.000000e+00 1840
9 TraesCS2B01G583200 chr2D 95.925 859 33 2 2087 2944 627919169 627920026 0.000000e+00 1391
10 TraesCS2B01G583200 chr2D 94.030 603 33 3 3106 3708 627920025 627920624 0.000000e+00 911
11 TraesCS2B01G583200 chr2D 92.045 176 12 2 2940 3114 376861289 376861463 2.860000e-61 246
12 TraesCS2B01G583200 chr6D 92.899 169 12 0 2943 3111 109240318 109240486 2.860000e-61 246
13 TraesCS2B01G583200 chr5D 92.486 173 12 1 2943 3114 42949724 42949552 2.860000e-61 246
14 TraesCS2B01G583200 chr1A 92.899 169 12 0 2942 3110 493208149 493207981 2.860000e-61 246
15 TraesCS2B01G583200 chr4D 92.442 172 12 1 2943 3114 93336684 93336854 1.030000e-60 244
16 TraesCS2B01G583200 chr3A 90.909 187 10 4 2933 3115 225018389 225018572 1.030000e-60 244
17 TraesCS2B01G583200 chr3A 91.011 178 16 0 2943 3120 514625354 514625531 1.330000e-59 241
18 TraesCS2B01G583200 chr6B 91.061 179 14 2 2932 3109 639991667 639991490 1.330000e-59 241
19 TraesCS2B01G583200 chr4A 90.608 181 14 3 2940 3119 92731991 92731813 1.720000e-58 237


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G583200 chr2B 770676690 770680397 3707 False 6848.000000 6848 100.000000 1 3708 1 chr2B.!!$F1 3707
1 TraesCS2B01G583200 chr2B 748355955 748356560 605 True 749.000000 749 88.801000 21 651 1 chr2B.!!$R2 630
2 TraesCS2B01G583200 chr2B 748202542 748203151 609 True 643.000000 643 85.649000 1 651 1 chr2B.!!$R1 650
3 TraesCS2B01G583200 chr2A 758393619 758397059 3440 False 978.600000 2728 89.875000 11 3708 5 chr2A.!!$F1 3697
4 TraesCS2B01G583200 chr2D 627917236 627920624 3388 False 1380.666667 1840 92.120667 1 3708 3 chr2D.!!$F2 3707

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
523 553 0.033504 TTGGACAGTGAACGAGGCTC 59.966 55.0 3.87 3.87 0.00 4.70 F
897 945 0.179048 CGGGTGCTCATAATCTGCCA 60.179 55.0 0.00 0.00 0.00 4.92 F
901 949 0.465287 TGCTCATAATCTGCCAGCGA 59.535 50.0 0.00 0.00 32.43 4.93 F
1739 1820 0.740737 GGCAACTGCACACTGTCTTT 59.259 50.0 3.76 0.00 44.36 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1878 1959 1.064952 CCACTGTCCGAAACAAACCAC 59.935 52.381 0.0 0.0 37.45 4.16 R
1879 1960 1.065345 TCCACTGTCCGAAACAAACCA 60.065 47.619 0.0 0.0 37.45 3.67 R
1880 1961 1.332686 GTCCACTGTCCGAAACAAACC 59.667 52.381 0.0 0.0 37.45 3.27 R
3138 3604 1.293924 CACCGAGATTCAGCCATCAC 58.706 55.000 0.0 0.0 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
481 507 3.928769 CATCGCCGTCGCCATGTG 61.929 66.667 0.00 0.00 35.26 3.21
486 512 1.878522 GCCGTCGCCATGTGAGTAG 60.879 63.158 0.00 0.00 0.00 2.57
487 513 1.511305 CCGTCGCCATGTGAGTAGT 59.489 57.895 0.00 0.00 0.00 2.73
488 514 0.736636 CCGTCGCCATGTGAGTAGTA 59.263 55.000 0.00 0.00 0.00 1.82
489 515 1.268589 CCGTCGCCATGTGAGTAGTAG 60.269 57.143 0.00 0.00 0.00 2.57
514 544 1.070786 GGAACGGCTTGGACAGTGA 59.929 57.895 0.00 0.00 0.00 3.41
523 553 0.033504 TTGGACAGTGAACGAGGCTC 59.966 55.000 3.87 3.87 0.00 4.70
533 563 3.006940 TGAACGAGGCTCGCAAATAAAT 58.993 40.909 34.76 11.71 45.12 1.40
534 564 4.033587 GTGAACGAGGCTCGCAAATAAATA 59.966 41.667 34.76 9.76 45.12 1.40
535 565 4.632251 TGAACGAGGCTCGCAAATAAATAA 59.368 37.500 34.76 7.68 45.12 1.40
536 566 5.122554 TGAACGAGGCTCGCAAATAAATAAA 59.877 36.000 34.76 6.39 45.12 1.40
537 567 5.751243 ACGAGGCTCGCAAATAAATAAAT 57.249 34.783 34.76 9.39 45.12 1.40
538 568 6.854496 ACGAGGCTCGCAAATAAATAAATA 57.146 33.333 34.76 0.00 45.12 1.40
654 689 4.873129 CTCCCGTCCACGCCATCG 62.873 72.222 0.00 0.00 42.43 3.84
771 812 1.361668 CCGACATTCCTCGCAAGGTG 61.362 60.000 0.00 0.00 43.82 4.00
772 813 1.796796 GACATTCCTCGCAAGGTGC 59.203 57.895 0.00 0.00 43.82 5.01
773 814 0.955428 GACATTCCTCGCAAGGTGCA 60.955 55.000 0.61 0.00 45.36 4.57
775 816 1.675641 ATTCCTCGCAAGGTGCACC 60.676 57.895 29.22 29.22 45.36 5.01
789 837 1.075542 TGCACCTTTACTCGCATTCG 58.924 50.000 0.00 0.00 0.00 3.34
799 847 2.103143 CGCATTCGTCTCGGCTCT 59.897 61.111 0.00 0.00 0.00 4.09
804 852 1.716826 ATTCGTCTCGGCTCTCGTCC 61.717 60.000 0.00 0.00 40.32 4.79
811 859 4.480031 GGCTCTCGTCCGAGTTTC 57.520 61.111 15.59 6.78 42.49 2.78
813 861 0.456995 GGCTCTCGTCCGAGTTTCTG 60.457 60.000 15.59 4.86 42.49 3.02
814 862 1.073768 GCTCTCGTCCGAGTTTCTGC 61.074 60.000 15.59 9.93 42.49 4.26
815 863 0.523966 CTCTCGTCCGAGTTTCTGCT 59.476 55.000 15.59 0.00 42.49 4.24
816 864 0.522180 TCTCGTCCGAGTTTCTGCTC 59.478 55.000 15.59 0.00 42.49 4.26
817 865 0.523966 CTCGTCCGAGTTTCTGCTCT 59.476 55.000 8.50 0.00 37.47 4.09
819 867 0.523966 CGTCCGAGTTTCTGCTCTCT 59.476 55.000 0.00 0.00 33.55 3.10
820 868 1.738350 CGTCCGAGTTTCTGCTCTCTA 59.262 52.381 0.00 0.00 33.55 2.43
821 869 2.356382 CGTCCGAGTTTCTGCTCTCTAT 59.644 50.000 0.00 0.00 33.55 1.98
822 870 3.181495 CGTCCGAGTTTCTGCTCTCTATT 60.181 47.826 0.00 0.00 33.55 1.73
824 872 4.801516 GTCCGAGTTTCTGCTCTCTATTTC 59.198 45.833 0.00 0.00 33.55 2.17
825 873 4.462834 TCCGAGTTTCTGCTCTCTATTTCA 59.537 41.667 0.00 0.00 33.55 2.69
827 875 5.406649 CGAGTTTCTGCTCTCTATTTCACT 58.593 41.667 0.00 0.00 33.55 3.41
829 877 6.034470 CGAGTTTCTGCTCTCTATTTCACTTC 59.966 42.308 0.00 0.00 33.55 3.01
830 878 6.169800 AGTTTCTGCTCTCTATTTCACTTCC 58.830 40.000 0.00 0.00 0.00 3.46
832 880 2.863137 CTGCTCTCTATTTCACTTCCGC 59.137 50.000 0.00 0.00 0.00 5.54
833 881 1.855360 GCTCTCTATTTCACTTCCGCG 59.145 52.381 0.00 0.00 0.00 6.46
835 883 1.136305 TCTCTATTTCACTTCCGCGGG 59.864 52.381 27.83 13.23 0.00 6.13
836 884 1.136305 CTCTATTTCACTTCCGCGGGA 59.864 52.381 27.83 17.96 0.00 5.14
837 885 1.134907 TCTATTTCACTTCCGCGGGAC 60.135 52.381 27.83 0.00 0.00 4.46
855 903 2.657237 GGAGTGTGGTGACCGGAG 59.343 66.667 9.46 0.00 0.00 4.63
887 935 3.407967 GATTCCCCCGGGTGCTCA 61.408 66.667 21.85 0.00 36.47 4.26
888 936 2.696125 ATTCCCCCGGGTGCTCAT 60.696 61.111 21.85 0.46 36.47 2.90
889 937 1.385347 ATTCCCCCGGGTGCTCATA 60.385 57.895 21.85 0.00 36.47 2.15
890 938 0.991355 ATTCCCCCGGGTGCTCATAA 60.991 55.000 21.85 0.00 36.47 1.90
891 939 0.991355 TTCCCCCGGGTGCTCATAAT 60.991 55.000 21.85 0.00 36.47 1.28
893 941 1.418908 CCCCCGGGTGCTCATAATCT 61.419 60.000 21.85 0.00 0.00 2.40
894 942 0.250467 CCCCGGGTGCTCATAATCTG 60.250 60.000 21.85 0.00 0.00 2.90
895 943 0.886490 CCCGGGTGCTCATAATCTGC 60.886 60.000 14.18 0.00 0.00 4.26
896 944 0.886490 CCGGGTGCTCATAATCTGCC 60.886 60.000 0.00 0.00 0.00 4.85
897 945 0.179048 CGGGTGCTCATAATCTGCCA 60.179 55.000 0.00 0.00 0.00 4.92
901 949 0.465287 TGCTCATAATCTGCCAGCGA 59.535 50.000 0.00 0.00 32.43 4.93
902 950 1.071228 TGCTCATAATCTGCCAGCGAT 59.929 47.619 0.00 0.00 32.43 4.58
903 951 2.149578 GCTCATAATCTGCCAGCGATT 58.850 47.619 12.11 12.11 35.45 3.34
904 952 2.159234 GCTCATAATCTGCCAGCGATTC 59.841 50.000 11.20 0.00 33.47 2.52
905 953 2.407090 TCATAATCTGCCAGCGATTCG 58.593 47.619 0.62 0.62 33.47 3.34
906 954 1.462283 CATAATCTGCCAGCGATTCGG 59.538 52.381 8.34 0.00 33.47 4.30
919 968 1.676014 CGATTCGGTGGCCTCTTCTTT 60.676 52.381 3.32 0.00 0.00 2.52
922 971 2.335712 CGGTGGCCTCTTCTTTGCC 61.336 63.158 3.32 0.00 45.56 4.52
925 974 2.034221 GGCCTCTTCTTTGCCCGT 59.966 61.111 0.00 0.00 39.30 5.28
1015 1087 1.128692 GTTTGATGAAACGCCTCTCCG 59.871 52.381 0.00 0.00 32.49 4.63
1043 1115 1.665679 CTTAACTATGTGGCTGCCGTG 59.334 52.381 14.98 4.55 0.00 4.94
1063 1135 3.616821 GTGCTCGTATGATGCTGTTGTAA 59.383 43.478 7.57 0.00 0.00 2.41
1064 1136 4.092821 GTGCTCGTATGATGCTGTTGTAAA 59.907 41.667 7.57 0.00 0.00 2.01
1065 1137 4.693095 TGCTCGTATGATGCTGTTGTAAAA 59.307 37.500 7.57 0.00 0.00 1.52
1066 1138 5.180304 TGCTCGTATGATGCTGTTGTAAAAA 59.820 36.000 7.57 0.00 0.00 1.94
1067 1139 5.734498 GCTCGTATGATGCTGTTGTAAAAAG 59.266 40.000 0.00 0.00 33.02 2.27
1068 1140 6.620733 GCTCGTATGATGCTGTTGTAAAAAGT 60.621 38.462 0.00 0.00 32.25 2.66
1069 1141 6.827641 TCGTATGATGCTGTTGTAAAAAGTC 58.172 36.000 0.00 0.00 32.25 3.01
1070 1142 6.425417 TCGTATGATGCTGTTGTAAAAAGTCA 59.575 34.615 0.00 0.00 32.25 3.41
1071 1143 7.119116 TCGTATGATGCTGTTGTAAAAAGTCAT 59.881 33.333 0.00 0.00 33.16 3.06
1072 1144 7.426456 CGTATGATGCTGTTGTAAAAAGTCATC 59.574 37.037 0.00 0.00 41.22 2.92
1073 1145 6.631971 TGATGCTGTTGTAAAAAGTCATCA 57.368 33.333 10.57 10.57 44.62 3.07
1074 1146 6.671190 TGATGCTGTTGTAAAAAGTCATCAG 58.329 36.000 10.57 0.00 43.35 2.90
1075 1147 6.486320 TGATGCTGTTGTAAAAAGTCATCAGA 59.514 34.615 10.57 0.00 43.35 3.27
1076 1148 6.060028 TGCTGTTGTAAAAAGTCATCAGAC 57.940 37.500 0.00 0.00 45.31 3.51
1092 1164 7.422399 GTCATCAGACTGTAGAGTTCTTATCC 58.578 42.308 1.59 0.00 41.64 2.59
1094 1166 8.495260 TCATCAGACTGTAGAGTTCTTATCCTA 58.505 37.037 1.59 0.00 30.16 2.94
1095 1167 9.126151 CATCAGACTGTAGAGTTCTTATCCTAA 57.874 37.037 1.59 0.00 30.16 2.69
1097 1169 8.549731 TCAGACTGTAGAGTTCTTATCCTAAGA 58.450 37.037 1.59 0.00 30.16 2.10
1099 1171 8.774183 AGACTGTAGAGTTCTTATCCTAAGAGA 58.226 37.037 0.00 0.00 30.16 3.10
1100 1172 8.974060 ACTGTAGAGTTCTTATCCTAAGAGAG 57.026 38.462 0.00 0.00 0.00 3.20
1101 1173 7.501225 ACTGTAGAGTTCTTATCCTAAGAGAGC 59.499 40.741 0.00 0.00 0.00 4.09
1179 1251 1.363807 GGCTGTTGCAGTTGGTTCC 59.636 57.895 0.00 0.00 41.91 3.62
1224 1296 3.366273 CGAAGAGAGCTGATCTGATAGCC 60.366 52.174 0.00 7.15 38.84 3.93
1325 1397 5.554034 AGCCCACACTATATATACCCTCT 57.446 43.478 0.00 0.00 0.00 3.69
1606 1686 9.559732 TTGAATATGAACACAGGGTTATATGAG 57.440 33.333 0.00 0.00 40.63 2.90
1610 1690 3.560636 ACACAGGGTTATATGAGGCAC 57.439 47.619 0.00 0.00 0.00 5.01
1737 1818 4.147701 GGCAACTGCACACTGTCT 57.852 55.556 3.76 0.00 44.36 3.41
1739 1820 0.740737 GGCAACTGCACACTGTCTTT 59.259 50.000 3.76 0.00 44.36 2.52
1740 1821 1.134946 GGCAACTGCACACTGTCTTTT 59.865 47.619 3.76 0.00 44.36 2.27
1742 1823 3.363178 GCAACTGCACACTGTCTTTTAC 58.637 45.455 0.00 0.00 41.59 2.01
1743 1824 3.792124 GCAACTGCACACTGTCTTTTACC 60.792 47.826 0.00 0.00 41.59 2.85
1745 1826 3.206150 ACTGCACACTGTCTTTTACCAG 58.794 45.455 0.00 0.00 34.82 4.00
1746 1827 3.206150 CTGCACACTGTCTTTTACCAGT 58.794 45.455 0.00 0.00 42.47 4.00
1747 1828 3.616219 TGCACACTGTCTTTTACCAGTT 58.384 40.909 0.00 0.00 39.83 3.16
1749 1830 4.142491 TGCACACTGTCTTTTACCAGTTTG 60.142 41.667 0.00 0.00 39.83 2.93
1750 1831 4.095782 GCACACTGTCTTTTACCAGTTTGA 59.904 41.667 9.43 0.00 40.24 2.69
1751 1832 5.221048 GCACACTGTCTTTTACCAGTTTGAT 60.221 40.000 9.43 0.00 40.24 2.57
1752 1833 6.201517 CACACTGTCTTTTACCAGTTTGATG 58.798 40.000 0.00 0.00 40.24 3.07
1753 1834 5.215160 CACTGTCTTTTACCAGTTTGATGC 58.785 41.667 0.00 0.00 39.83 3.91
1754 1835 4.887071 ACTGTCTTTTACCAGTTTGATGCA 59.113 37.500 0.00 0.00 38.76 3.96
1756 1837 6.040842 ACTGTCTTTTACCAGTTTGATGCAAT 59.959 34.615 0.00 0.00 38.76 3.56
1757 1838 6.815089 TGTCTTTTACCAGTTTGATGCAATT 58.185 32.000 0.00 0.00 0.00 2.32
1758 1839 7.271511 TGTCTTTTACCAGTTTGATGCAATTT 58.728 30.769 0.00 0.00 0.00 1.82
1760 1841 5.921004 TTTACCAGTTTGATGCAATTTGC 57.079 34.783 14.49 14.49 45.29 3.68
1774 1855 5.987777 GCAATTTGCATATACATGGCAAA 57.012 34.783 16.35 17.54 44.26 3.68
1775 1856 5.740406 GCAATTTGCATATACATGGCAAAC 58.260 37.500 17.57 5.76 44.26 2.93
1777 1858 6.510478 GCAATTTGCATATACATGGCAAACTG 60.510 38.462 17.70 17.70 44.26 3.16
1778 1859 5.911378 TTTGCATATACATGGCAAACTGA 57.089 34.783 13.03 0.00 35.32 3.41
1779 1860 5.911378 TTGCATATACATGGCAAACTGAA 57.089 34.783 4.14 0.00 32.36 3.02
1780 1861 5.503662 TGCATATACATGGCAAACTGAAG 57.496 39.130 0.00 0.00 32.36 3.02
1781 1862 5.192176 TGCATATACATGGCAAACTGAAGA 58.808 37.500 0.00 0.00 32.36 2.87
1782 1863 5.829391 TGCATATACATGGCAAACTGAAGAT 59.171 36.000 0.00 0.00 32.36 2.40
1783 1864 6.997476 TGCATATACATGGCAAACTGAAGATA 59.003 34.615 0.00 0.00 32.36 1.98
1784 1865 7.041167 TGCATATACATGGCAAACTGAAGATAC 60.041 37.037 0.00 0.00 32.36 2.24
1785 1866 7.041167 GCATATACATGGCAAACTGAAGATACA 60.041 37.037 0.00 0.00 32.36 2.29
1786 1867 6.932356 ATACATGGCAAACTGAAGATACAG 57.068 37.500 0.00 0.00 42.78 2.74
1787 1868 3.441572 ACATGGCAAACTGAAGATACAGC 59.558 43.478 0.00 0.00 41.06 4.40
1788 1869 3.423539 TGGCAAACTGAAGATACAGCT 57.576 42.857 0.00 0.00 41.06 4.24
1789 1870 3.338249 TGGCAAACTGAAGATACAGCTC 58.662 45.455 0.00 0.00 41.06 4.09
1790 1871 3.008375 TGGCAAACTGAAGATACAGCTCT 59.992 43.478 0.00 0.00 41.06 4.09
1791 1872 4.222810 TGGCAAACTGAAGATACAGCTCTA 59.777 41.667 0.00 0.00 41.06 2.43
1792 1873 5.104776 TGGCAAACTGAAGATACAGCTCTAT 60.105 40.000 0.00 0.00 41.06 1.98
1793 1874 5.465056 GGCAAACTGAAGATACAGCTCTATC 59.535 44.000 0.97 0.97 41.06 2.08
1794 1875 5.465056 GCAAACTGAAGATACAGCTCTATCC 59.535 44.000 5.47 0.00 41.06 2.59
1795 1876 5.799827 AACTGAAGATACAGCTCTATCCC 57.200 43.478 5.47 0.01 41.06 3.85
1796 1877 5.073437 ACTGAAGATACAGCTCTATCCCT 57.927 43.478 5.47 0.00 41.06 4.20
1797 1878 5.076873 ACTGAAGATACAGCTCTATCCCTC 58.923 45.833 5.47 4.18 41.06 4.30
1798 1879 5.162991 ACTGAAGATACAGCTCTATCCCTCT 60.163 44.000 5.47 0.00 41.06 3.69
1799 1880 5.076182 TGAAGATACAGCTCTATCCCTCTG 58.924 45.833 5.47 0.00 0.00 3.35
1800 1881 4.740154 AGATACAGCTCTATCCCTCTGT 57.260 45.455 5.47 0.00 41.93 3.41
1801 1882 4.662278 AGATACAGCTCTATCCCTCTGTC 58.338 47.826 5.47 0.00 40.01 3.51
1802 1883 4.353788 AGATACAGCTCTATCCCTCTGTCT 59.646 45.833 5.47 0.00 40.01 3.41
1803 1884 5.550011 AGATACAGCTCTATCCCTCTGTCTA 59.450 44.000 5.47 0.00 40.01 2.59
1804 1885 4.740154 ACAGCTCTATCCCTCTGTCTAT 57.260 45.455 0.00 0.00 35.05 1.98
1805 1886 4.406456 ACAGCTCTATCCCTCTGTCTATG 58.594 47.826 0.00 0.00 35.05 2.23
1806 1887 3.763360 CAGCTCTATCCCTCTGTCTATGG 59.237 52.174 0.00 0.00 0.00 2.74
1807 1888 3.660177 AGCTCTATCCCTCTGTCTATGGA 59.340 47.826 0.00 0.00 0.00 3.41
1808 1889 3.761752 GCTCTATCCCTCTGTCTATGGAC 59.238 52.174 1.56 1.56 42.42 4.02
1809 1890 4.508405 GCTCTATCCCTCTGTCTATGGACT 60.508 50.000 10.82 0.00 42.54 3.85
1810 1891 5.640147 CTCTATCCCTCTGTCTATGGACTT 58.360 45.833 10.82 0.00 42.54 3.01
1811 1892 5.636123 TCTATCCCTCTGTCTATGGACTTC 58.364 45.833 10.82 0.00 42.54 3.01
1812 1893 3.033659 TCCCTCTGTCTATGGACTTCC 57.966 52.381 10.82 0.00 42.54 3.46
1813 1894 2.587777 TCCCTCTGTCTATGGACTTCCT 59.412 50.000 10.82 0.00 42.54 3.36
1814 1895 3.012959 TCCCTCTGTCTATGGACTTCCTT 59.987 47.826 10.82 0.00 42.54 3.36
1815 1896 3.386402 CCCTCTGTCTATGGACTTCCTTC 59.614 52.174 10.82 0.00 42.54 3.46
1816 1897 4.026744 CCTCTGTCTATGGACTTCCTTCA 58.973 47.826 10.82 0.00 42.54 3.02
1817 1898 4.653341 CCTCTGTCTATGGACTTCCTTCAT 59.347 45.833 10.82 0.00 42.54 2.57
1818 1899 5.453057 CCTCTGTCTATGGACTTCCTTCATG 60.453 48.000 10.82 0.00 42.54 3.07
1819 1900 5.026121 TCTGTCTATGGACTTCCTTCATGT 58.974 41.667 10.82 0.00 42.54 3.21
1820 1901 5.127845 TCTGTCTATGGACTTCCTTCATGTC 59.872 44.000 10.82 0.00 42.54 3.06
1821 1902 5.026121 TGTCTATGGACTTCCTTCATGTCT 58.974 41.667 10.82 0.00 42.54 3.41
1822 1903 6.194967 TGTCTATGGACTTCCTTCATGTCTA 58.805 40.000 10.82 0.00 42.54 2.59
1823 1904 6.667848 TGTCTATGGACTTCCTTCATGTCTAA 59.332 38.462 10.82 0.00 42.54 2.10
1824 1905 7.180229 TGTCTATGGACTTCCTTCATGTCTAAA 59.820 37.037 10.82 0.00 42.54 1.85
1825 1906 8.041323 GTCTATGGACTTCCTTCATGTCTAAAA 58.959 37.037 1.27 0.00 39.24 1.52
1826 1907 8.772250 TCTATGGACTTCCTTCATGTCTAAAAT 58.228 33.333 0.00 0.00 36.82 1.82
1828 1909 8.970859 ATGGACTTCCTTCATGTCTAAAATAG 57.029 34.615 0.00 0.00 36.82 1.73
1829 1910 6.823689 TGGACTTCCTTCATGTCTAAAATAGC 59.176 38.462 0.00 0.00 36.82 2.97
1830 1911 7.051000 GGACTTCCTTCATGTCTAAAATAGCT 58.949 38.462 0.00 0.00 31.17 3.32
1831 1912 7.554476 GGACTTCCTTCATGTCTAAAATAGCTT 59.446 37.037 0.00 0.00 31.17 3.74
1832 1913 8.273780 ACTTCCTTCATGTCTAAAATAGCTTG 57.726 34.615 0.00 0.00 0.00 4.01
1833 1914 7.885399 ACTTCCTTCATGTCTAAAATAGCTTGT 59.115 33.333 0.00 0.00 0.00 3.16
1834 1915 8.635765 TTCCTTCATGTCTAAAATAGCTTGTT 57.364 30.769 0.00 0.00 0.00 2.83
1835 1916 8.044060 TCCTTCATGTCTAAAATAGCTTGTTG 57.956 34.615 0.00 0.00 0.00 3.33
1836 1917 7.665559 TCCTTCATGTCTAAAATAGCTTGTTGT 59.334 33.333 0.00 0.00 0.00 3.32
1837 1918 8.946085 CCTTCATGTCTAAAATAGCTTGTTGTA 58.054 33.333 0.00 0.00 0.00 2.41
1838 1919 9.760660 CTTCATGTCTAAAATAGCTTGTTGTAC 57.239 33.333 0.00 0.00 0.00 2.90
1839 1920 8.840833 TCATGTCTAAAATAGCTTGTTGTACA 57.159 30.769 0.00 0.00 0.00 2.90
1840 1921 9.448438 TCATGTCTAAAATAGCTTGTTGTACAT 57.552 29.630 0.00 0.00 0.00 2.29
1843 1924 8.511321 TGTCTAAAATAGCTTGTTGTACATTGG 58.489 33.333 0.00 0.00 0.00 3.16
1844 1925 8.512138 GTCTAAAATAGCTTGTTGTACATTGGT 58.488 33.333 0.00 0.00 0.00 3.67
1845 1926 9.073475 TCTAAAATAGCTTGTTGTACATTGGTT 57.927 29.630 0.00 0.00 0.00 3.67
1846 1927 9.341899 CTAAAATAGCTTGTTGTACATTGGTTC 57.658 33.333 0.00 0.00 0.00 3.62
1847 1928 3.896648 AGCTTGTTGTACATTGGTTCG 57.103 42.857 0.00 0.00 0.00 3.95
1848 1929 3.211045 AGCTTGTTGTACATTGGTTCGT 58.789 40.909 0.00 0.00 0.00 3.85
1849 1930 3.630312 AGCTTGTTGTACATTGGTTCGTT 59.370 39.130 0.00 0.00 0.00 3.85
1850 1931 3.728718 GCTTGTTGTACATTGGTTCGTTG 59.271 43.478 0.00 0.00 0.00 4.10
1851 1932 4.732355 GCTTGTTGTACATTGGTTCGTTGT 60.732 41.667 0.00 0.00 0.00 3.32
1852 1933 5.504337 GCTTGTTGTACATTGGTTCGTTGTA 60.504 40.000 0.00 0.00 0.00 2.41
1853 1934 5.660629 TGTTGTACATTGGTTCGTTGTAG 57.339 39.130 0.00 0.00 0.00 2.74
1854 1935 5.358090 TGTTGTACATTGGTTCGTTGTAGA 58.642 37.500 0.00 0.00 0.00 2.59
1855 1936 5.816258 TGTTGTACATTGGTTCGTTGTAGAA 59.184 36.000 0.00 0.00 29.74 2.10
1856 1937 6.483974 TGTTGTACATTGGTTCGTTGTAGAAT 59.516 34.615 0.00 0.00 33.46 2.40
1857 1938 7.656542 TGTTGTACATTGGTTCGTTGTAGAATA 59.343 33.333 0.00 0.00 33.46 1.75
1858 1939 8.662141 GTTGTACATTGGTTCGTTGTAGAATAT 58.338 33.333 0.00 0.00 33.46 1.28
1859 1940 8.192068 TGTACATTGGTTCGTTGTAGAATATG 57.808 34.615 0.00 0.00 32.25 1.78
1860 1941 7.820386 TGTACATTGGTTCGTTGTAGAATATGT 59.180 33.333 0.00 0.00 35.61 2.29
1861 1942 9.304731 GTACATTGGTTCGTTGTAGAATATGTA 57.695 33.333 0.00 0.00 34.51 2.29
1862 1943 8.193250 ACATTGGTTCGTTGTAGAATATGTAC 57.807 34.615 0.00 0.00 32.77 2.90
1863 1944 8.038944 ACATTGGTTCGTTGTAGAATATGTACT 58.961 33.333 0.00 0.00 32.77 2.73
1864 1945 8.879759 CATTGGTTCGTTGTAGAATATGTACTT 58.120 33.333 0.00 0.00 32.25 2.24
1865 1946 8.836268 TTGGTTCGTTGTAGAATATGTACTTT 57.164 30.769 0.00 0.00 32.25 2.66
1866 1947 8.836268 TGGTTCGTTGTAGAATATGTACTTTT 57.164 30.769 0.00 0.00 32.25 2.27
1867 1948 8.928733 TGGTTCGTTGTAGAATATGTACTTTTC 58.071 33.333 0.00 0.00 32.25 2.29
1868 1949 8.385858 GGTTCGTTGTAGAATATGTACTTTTCC 58.614 37.037 0.00 0.00 32.25 3.13
1869 1950 9.148104 GTTCGTTGTAGAATATGTACTTTTCCT 57.852 33.333 0.00 0.00 32.25 3.36
1870 1951 8.697846 TCGTTGTAGAATATGTACTTTTCCTG 57.302 34.615 0.00 0.00 0.00 3.86
1871 1952 8.308931 TCGTTGTAGAATATGTACTTTTCCTGT 58.691 33.333 0.00 0.00 0.00 4.00
1872 1953 8.932791 CGTTGTAGAATATGTACTTTTCCTGTT 58.067 33.333 0.00 0.00 0.00 3.16
1881 1962 9.832445 ATATGTACTTTTCCTGTTAGTATGTGG 57.168 33.333 0.00 0.00 0.00 4.17
1882 1963 7.069877 TGTACTTTTCCTGTTAGTATGTGGT 57.930 36.000 0.00 0.00 0.00 4.16
1883 1964 7.511268 TGTACTTTTCCTGTTAGTATGTGGTT 58.489 34.615 0.00 0.00 0.00 3.67
1884 1965 7.994334 TGTACTTTTCCTGTTAGTATGTGGTTT 59.006 33.333 0.00 0.00 0.00 3.27
1885 1966 7.272037 ACTTTTCCTGTTAGTATGTGGTTTG 57.728 36.000 0.00 0.00 0.00 2.93
1886 1967 6.831868 ACTTTTCCTGTTAGTATGTGGTTTGT 59.168 34.615 0.00 0.00 0.00 2.83
1887 1968 7.340999 ACTTTTCCTGTTAGTATGTGGTTTGTT 59.659 33.333 0.00 0.00 0.00 2.83
1888 1969 7.648039 TTTCCTGTTAGTATGTGGTTTGTTT 57.352 32.000 0.00 0.00 0.00 2.83
1889 1970 6.870971 TCCTGTTAGTATGTGGTTTGTTTC 57.129 37.500 0.00 0.00 0.00 2.78
1890 1971 5.467399 TCCTGTTAGTATGTGGTTTGTTTCG 59.533 40.000 0.00 0.00 0.00 3.46
1891 1972 5.334569 CCTGTTAGTATGTGGTTTGTTTCGG 60.335 44.000 0.00 0.00 0.00 4.30
1892 1973 5.366460 TGTTAGTATGTGGTTTGTTTCGGA 58.634 37.500 0.00 0.00 0.00 4.55
1893 1974 5.236911 TGTTAGTATGTGGTTTGTTTCGGAC 59.763 40.000 0.00 0.00 0.00 4.79
1894 1975 3.811083 AGTATGTGGTTTGTTTCGGACA 58.189 40.909 0.00 0.00 36.19 4.02
1895 1976 3.813166 AGTATGTGGTTTGTTTCGGACAG 59.187 43.478 0.00 0.00 39.94 3.51
1896 1977 2.116827 TGTGGTTTGTTTCGGACAGT 57.883 45.000 0.00 0.00 39.94 3.55
1897 1978 1.740585 TGTGGTTTGTTTCGGACAGTG 59.259 47.619 0.00 0.00 39.94 3.66
1898 1979 1.064952 GTGGTTTGTTTCGGACAGTGG 59.935 52.381 0.00 0.00 39.94 4.00
1899 1980 1.065345 TGGTTTGTTTCGGACAGTGGA 60.065 47.619 0.00 0.00 39.94 4.02
1900 1981 1.332686 GGTTTGTTTCGGACAGTGGAC 59.667 52.381 0.00 0.00 39.94 4.02
1901 1982 2.011222 GTTTGTTTCGGACAGTGGACA 58.989 47.619 0.00 0.00 39.94 4.02
1902 1983 2.616842 GTTTGTTTCGGACAGTGGACAT 59.383 45.455 0.00 0.00 39.94 3.06
1903 1984 3.755112 TTGTTTCGGACAGTGGACATA 57.245 42.857 0.00 0.00 39.94 2.29
1904 1985 3.755112 TGTTTCGGACAGTGGACATAA 57.245 42.857 0.00 0.00 33.40 1.90
1905 1986 4.280436 TGTTTCGGACAGTGGACATAAT 57.720 40.909 0.00 0.00 33.40 1.28
1906 1987 4.250464 TGTTTCGGACAGTGGACATAATC 58.750 43.478 0.00 0.00 33.40 1.75
1907 1988 4.020573 TGTTTCGGACAGTGGACATAATCT 60.021 41.667 0.00 0.00 33.40 2.40
1908 1989 3.801114 TCGGACAGTGGACATAATCTG 57.199 47.619 0.00 0.00 0.00 2.90
1909 1990 2.159099 TCGGACAGTGGACATAATCTGC 60.159 50.000 0.00 0.00 0.00 4.26
1910 1991 2.418609 CGGACAGTGGACATAATCTGCA 60.419 50.000 0.00 0.00 0.00 4.41
1911 1992 3.609853 GGACAGTGGACATAATCTGCAA 58.390 45.455 0.00 0.00 0.00 4.08
1912 1993 4.009675 GGACAGTGGACATAATCTGCAAA 58.990 43.478 0.00 0.00 0.00 3.68
1913 1994 4.095483 GGACAGTGGACATAATCTGCAAAG 59.905 45.833 0.00 0.00 0.00 2.77
1914 1995 4.012374 ACAGTGGACATAATCTGCAAAGG 58.988 43.478 0.00 0.00 0.00 3.11
1915 1996 4.263462 ACAGTGGACATAATCTGCAAAGGA 60.263 41.667 0.00 0.00 0.00 3.36
1916 1997 4.885907 CAGTGGACATAATCTGCAAAGGAT 59.114 41.667 0.00 0.00 0.00 3.24
1917 1998 5.359009 CAGTGGACATAATCTGCAAAGGATT 59.641 40.000 5.18 5.18 37.24 3.01
1918 1999 5.954150 AGTGGACATAATCTGCAAAGGATTT 59.046 36.000 5.14 0.00 40.26 2.17
1936 2017 8.753497 AAGGATTTGATAGAAATACAGGGTTC 57.247 34.615 0.00 0.00 0.00 3.62
1937 2018 7.872138 AGGATTTGATAGAAATACAGGGTTCA 58.128 34.615 0.00 0.00 0.00 3.18
1938 2019 8.506083 AGGATTTGATAGAAATACAGGGTTCAT 58.494 33.333 0.00 0.00 0.00 2.57
1939 2020 9.793259 GGATTTGATAGAAATACAGGGTTCATA 57.207 33.333 0.00 0.00 0.00 2.15
1958 2039 8.915871 GTTCATATGAAGCATTTGTTGTACAT 57.084 30.769 18.47 0.00 34.27 2.29
1959 2040 9.357652 GTTCATATGAAGCATTTGTTGTACATT 57.642 29.630 18.47 0.00 34.27 2.71
1960 2041 8.914328 TCATATGAAGCATTTGTTGTACATTG 57.086 30.769 1.98 0.00 0.00 2.82
1961 2042 7.975058 TCATATGAAGCATTTGTTGTACATTGG 59.025 33.333 1.98 0.00 0.00 3.16
1962 2043 5.528043 TGAAGCATTTGTTGTACATTGGT 57.472 34.783 0.00 0.00 0.00 3.67
1963 2044 5.911752 TGAAGCATTTGTTGTACATTGGTT 58.088 33.333 0.00 2.25 36.04 3.67
1971 2052 8.760569 CATTTGTTGTACATTGGTTCCTTTTAC 58.239 33.333 0.00 0.00 0.00 2.01
1975 2056 8.532819 TGTTGTACATTGGTTCCTTTTACTTTT 58.467 29.630 0.00 0.00 0.00 2.27
1981 2062 8.428852 ACATTGGTTCCTTTTACTTTTATTGCT 58.571 29.630 0.00 0.00 0.00 3.91
2002 2083 7.615582 TGCTATACTGTTCATTCTTCTTTGG 57.384 36.000 0.00 0.00 0.00 3.28
2035 2116 8.463930 TCCAAATTATGTTCCTATTTAGCTGG 57.536 34.615 0.00 0.00 0.00 4.85
2036 2117 8.278639 TCCAAATTATGTTCCTATTTAGCTGGA 58.721 33.333 0.00 0.00 0.00 3.86
2037 2118 8.571336 CCAAATTATGTTCCTATTTAGCTGGAG 58.429 37.037 0.00 0.00 0.00 3.86
2038 2119 9.125026 CAAATTATGTTCCTATTTAGCTGGAGT 57.875 33.333 0.00 0.00 0.00 3.85
2039 2120 8.910351 AATTATGTTCCTATTTAGCTGGAGTC 57.090 34.615 0.00 0.00 0.00 3.36
2040 2121 7.676683 TTATGTTCCTATTTAGCTGGAGTCT 57.323 36.000 0.00 0.00 0.00 3.24
2041 2122 8.777578 TTATGTTCCTATTTAGCTGGAGTCTA 57.222 34.615 0.00 0.00 0.00 2.59
2042 2123 7.676683 ATGTTCCTATTTAGCTGGAGTCTAA 57.323 36.000 0.00 0.00 0.00 2.10
2043 2124 7.113658 TGTTCCTATTTAGCTGGAGTCTAAG 57.886 40.000 0.00 0.00 0.00 2.18
2044 2125 5.793030 TCCTATTTAGCTGGAGTCTAAGC 57.207 43.478 0.00 9.54 39.82 3.09
2068 2149 7.710896 GCTTCTTAGCTTGAATATCCATTGTT 58.289 34.615 0.00 0.00 44.27 2.83
2071 2152 9.905713 TTCTTAGCTTGAATATCCATTGTTACT 57.094 29.630 0.00 0.00 0.00 2.24
2076 2157 9.632638 AGCTTGAATATCCATTGTTACTGTTAT 57.367 29.630 0.00 0.00 0.00 1.89
2302 2767 1.816961 GCCTATGCTCAGTTCATGGGG 60.817 57.143 7.34 1.52 41.28 4.96
2566 3031 2.678336 GTTCTTCCAGCACTATTTCCCG 59.322 50.000 0.00 0.00 0.00 5.14
2635 3100 5.021033 ACTATGAGAAGCACTTCCATGAG 57.979 43.478 17.45 14.02 40.33 2.90
2651 3116 0.689080 TGAGGATCTGGAGGAGGTGC 60.689 60.000 0.00 0.00 34.92 5.01
2674 3139 4.096003 AACTGGGGGATCGTGCCG 62.096 66.667 0.00 0.00 0.00 5.69
2697 3162 2.582436 GGATCCCAAGGCGACGAA 59.418 61.111 0.00 0.00 0.00 3.85
2739 3204 5.277925 GCCAGTGCATTTTTGCATAAAAACT 60.278 36.000 6.41 7.94 45.53 2.66
2741 3206 7.519649 GCCAGTGCATTTTTGCATAAAAACTTA 60.520 33.333 6.41 0.00 45.53 2.24
2767 3233 2.362077 TCTTGGTTTTTCAGCCTTGCTC 59.638 45.455 0.00 0.00 36.40 4.26
2805 3271 8.812513 TCTTTGTGAGAATGATACCATGAATT 57.187 30.769 0.00 0.00 32.36 2.17
2813 3279 2.689471 TGATACCATGAATTGTGCTGCC 59.311 45.455 0.00 0.00 0.00 4.85
2826 3292 2.935849 TGTGCTGCCGATATGTTAACAG 59.064 45.455 14.65 0.90 0.00 3.16
2927 3393 1.067974 TCTTCTCGGTTTGCTCGAACA 59.932 47.619 2.77 0.00 36.15 3.18
2942 3408 7.569639 TGCTCGAACAGACTTATACTATTCT 57.430 36.000 0.00 0.00 0.00 2.40
2943 3409 8.672823 TGCTCGAACAGACTTATACTATTCTA 57.327 34.615 0.00 0.00 0.00 2.10
2944 3410 8.557864 TGCTCGAACAGACTTATACTATTCTAC 58.442 37.037 0.00 0.00 0.00 2.59
2945 3411 8.776470 GCTCGAACAGACTTATACTATTCTACT 58.224 37.037 0.00 0.00 0.00 2.57
2947 3413 9.270640 TCGAACAGACTTATACTATTCTACTCC 57.729 37.037 0.00 0.00 0.00 3.85
2948 3414 8.505625 CGAACAGACTTATACTATTCTACTCCC 58.494 40.741 0.00 0.00 0.00 4.30
2949 3415 9.577222 GAACAGACTTATACTATTCTACTCCCT 57.423 37.037 0.00 0.00 0.00 4.20
2950 3416 9.939424 AACAGACTTATACTATTCTACTCCCTT 57.061 33.333 0.00 0.00 0.00 3.95
2951 3417 9.577222 ACAGACTTATACTATTCTACTCCCTTC 57.423 37.037 0.00 0.00 0.00 3.46
2952 3418 8.723311 CAGACTTATACTATTCTACTCCCTTCG 58.277 40.741 0.00 0.00 0.00 3.79
2953 3419 8.439172 AGACTTATACTATTCTACTCCCTTCGT 58.561 37.037 0.00 0.00 0.00 3.85
2954 3420 8.993404 ACTTATACTATTCTACTCCCTTCGTT 57.007 34.615 0.00 0.00 0.00 3.85
2955 3421 9.065798 ACTTATACTATTCTACTCCCTTCGTTC 57.934 37.037 0.00 0.00 0.00 3.95
2956 3422 6.897706 ATACTATTCTACTCCCTTCGTTCC 57.102 41.667 0.00 0.00 0.00 3.62
2957 3423 3.959449 ACTATTCTACTCCCTTCGTTCCC 59.041 47.826 0.00 0.00 0.00 3.97
2958 3424 2.314071 TTCTACTCCCTTCGTTCCCA 57.686 50.000 0.00 0.00 0.00 4.37
2959 3425 2.314071 TCTACTCCCTTCGTTCCCAA 57.686 50.000 0.00 0.00 0.00 4.12
2960 3426 2.612000 TCTACTCCCTTCGTTCCCAAA 58.388 47.619 0.00 0.00 0.00 3.28
2961 3427 3.178865 TCTACTCCCTTCGTTCCCAAAT 58.821 45.455 0.00 0.00 0.00 2.32
2962 3428 4.355549 TCTACTCCCTTCGTTCCCAAATA 58.644 43.478 0.00 0.00 0.00 1.40
2963 3429 4.966805 TCTACTCCCTTCGTTCCCAAATAT 59.033 41.667 0.00 0.00 0.00 1.28
2964 3430 6.138263 TCTACTCCCTTCGTTCCCAAATATA 58.862 40.000 0.00 0.00 0.00 0.86
2965 3431 5.703730 ACTCCCTTCGTTCCCAAATATAA 57.296 39.130 0.00 0.00 0.00 0.98
2966 3432 5.681639 ACTCCCTTCGTTCCCAAATATAAG 58.318 41.667 0.00 0.00 0.00 1.73
2967 3433 5.191124 ACTCCCTTCGTTCCCAAATATAAGT 59.809 40.000 0.00 0.00 0.00 2.24
2968 3434 5.677567 TCCCTTCGTTCCCAAATATAAGTC 58.322 41.667 0.00 0.00 0.00 3.01
2969 3435 5.427481 TCCCTTCGTTCCCAAATATAAGTCT 59.573 40.000 0.00 0.00 0.00 3.24
2970 3436 6.069847 TCCCTTCGTTCCCAAATATAAGTCTT 60.070 38.462 0.00 0.00 0.00 3.01
2971 3437 6.602009 CCCTTCGTTCCCAAATATAAGTCTTT 59.398 38.462 0.00 0.00 0.00 2.52
2972 3438 7.201705 CCCTTCGTTCCCAAATATAAGTCTTTC 60.202 40.741 0.00 0.00 0.00 2.62
2973 3439 7.553044 CCTTCGTTCCCAAATATAAGTCTTTCT 59.447 37.037 0.00 0.00 0.00 2.52
2974 3440 9.595823 CTTCGTTCCCAAATATAAGTCTTTCTA 57.404 33.333 0.00 0.00 0.00 2.10
2975 3441 9.947433 TTCGTTCCCAAATATAAGTCTTTCTAA 57.053 29.630 0.00 0.00 0.00 2.10
2976 3442 9.374838 TCGTTCCCAAATATAAGTCTTTCTAAC 57.625 33.333 0.00 0.00 0.00 2.34
2977 3443 8.325997 CGTTCCCAAATATAAGTCTTTCTAACG 58.674 37.037 0.00 0.00 0.00 3.18
2978 3444 9.374838 GTTCCCAAATATAAGTCTTTCTAACGA 57.625 33.333 0.00 0.00 0.00 3.85
2990 3456 8.480643 AGTCTTTCTAACGATTCCAATAAGTG 57.519 34.615 0.00 0.00 0.00 3.16
2991 3457 8.311836 AGTCTTTCTAACGATTCCAATAAGTGA 58.688 33.333 0.00 0.00 0.00 3.41
2992 3458 8.381387 GTCTTTCTAACGATTCCAATAAGTGAC 58.619 37.037 0.00 0.00 0.00 3.67
2993 3459 8.311836 TCTTTCTAACGATTCCAATAAGTGACT 58.688 33.333 0.00 0.00 0.00 3.41
2994 3460 9.582431 CTTTCTAACGATTCCAATAAGTGACTA 57.418 33.333 0.00 0.00 0.00 2.59
3023 3489 8.764524 ACAGAGTAAAATGAGTGAATCTACAC 57.235 34.615 0.00 0.00 40.60 2.90
3036 3502 8.764524 AGTGAATCTACACTCTAAAATGTGTC 57.235 34.615 1.91 0.00 46.36 3.67
3037 3503 8.589338 AGTGAATCTACACTCTAAAATGTGTCT 58.411 33.333 1.91 0.00 46.36 3.41
3038 3504 9.856488 GTGAATCTACACTCTAAAATGTGTCTA 57.144 33.333 1.91 0.00 44.94 2.59
3039 3505 9.856488 TGAATCTACACTCTAAAATGTGTCTAC 57.144 33.333 1.91 0.00 44.94 2.59
3040 3506 9.856488 GAATCTACACTCTAAAATGTGTCTACA 57.144 33.333 1.91 0.00 44.94 2.74
3046 3512 9.944376 ACACTCTAAAATGTGTCTACATACATT 57.056 29.630 0.00 0.00 46.54 2.71
3074 3540 7.765695 ATGTTGTAGTCCATTTGAAATGTCT 57.234 32.000 15.93 14.81 0.00 3.41
3075 3541 8.862325 ATGTTGTAGTCCATTTGAAATGTCTA 57.138 30.769 15.93 13.97 0.00 2.59
3076 3542 8.684386 TGTTGTAGTCCATTTGAAATGTCTAA 57.316 30.769 15.93 4.89 0.00 2.10
3077 3543 9.126151 TGTTGTAGTCCATTTGAAATGTCTAAA 57.874 29.630 15.93 10.39 0.00 1.85
3078 3544 9.959749 GTTGTAGTCCATTTGAAATGTCTAAAA 57.040 29.630 15.93 14.59 0.00 1.52
3083 3549 9.136323 AGTCCATTTGAAATGTCTAAAAAGACT 57.864 29.630 15.93 14.21 39.41 3.24
3084 3550 9.750125 GTCCATTTGAAATGTCTAAAAAGACTT 57.250 29.630 15.93 0.00 39.41 3.01
3101 3567 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
3102 3568 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3103 3569 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3104 3570 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3173 3639 4.819630 TCTCGGTGTCAATATAAAATGGCC 59.180 41.667 0.00 0.00 0.00 5.36
3192 3658 2.546795 GCCGAATCTCAGATACACCAGG 60.547 54.545 0.00 0.00 0.00 4.45
3201 3667 5.133830 TCTCAGATACACCAGGGTCATACTA 59.866 44.000 0.00 0.00 0.00 1.82
3406 3872 1.385409 GCGCGCCAAATTTACAGAAAC 59.615 47.619 23.24 0.00 0.00 2.78
3446 3912 0.543749 AGCTCCCCCTCAAAGAATCG 59.456 55.000 0.00 0.00 0.00 3.34
3526 3992 4.037923 CAGGGCTCAAAACTTACAACACAT 59.962 41.667 0.00 0.00 0.00 3.21
3603 4070 1.208358 CAGCACACACCGCATTCTG 59.792 57.895 0.00 0.00 0.00 3.02
3639 4106 1.654954 AACCGTCGTCATCCTCCGAG 61.655 60.000 0.00 0.00 33.10 4.63
3642 4109 2.122167 GTCGTCATCCTCCGAGCCT 61.122 63.158 0.00 0.00 33.10 4.58
3651 4118 2.437180 TCCGAGCCTTCGTCGCTA 60.437 61.111 0.00 0.00 45.28 4.26
3657 4124 2.842256 GCCTTCGTCGCTATCCCGA 61.842 63.158 0.00 0.00 34.40 5.14
3660 4127 2.060004 CTTCGTCGCTATCCCGAGCA 62.060 60.000 0.00 0.00 42.99 4.26
3663 4130 0.240145 CGTCGCTATCCCGAGCATTA 59.760 55.000 0.00 0.00 42.99 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
481 507 4.038162 AGCCGTTCCATCATTCTACTACTC 59.962 45.833 0.00 0.00 0.00 2.59
486 512 2.614057 CCAAGCCGTTCCATCATTCTAC 59.386 50.000 0.00 0.00 0.00 2.59
487 513 2.503765 TCCAAGCCGTTCCATCATTCTA 59.496 45.455 0.00 0.00 0.00 2.10
488 514 1.281867 TCCAAGCCGTTCCATCATTCT 59.718 47.619 0.00 0.00 0.00 2.40
489 515 1.401905 GTCCAAGCCGTTCCATCATTC 59.598 52.381 0.00 0.00 0.00 2.67
514 544 5.554822 TTTATTTATTTGCGAGCCTCGTT 57.445 34.783 16.50 1.39 42.81 3.85
654 689 1.226295 GAGTTGTTTATGCCCGCGC 60.226 57.895 0.00 0.00 0.00 6.86
655 690 1.060308 CGAGTTGTTTATGCCCGCG 59.940 57.895 0.00 0.00 0.00 6.46
657 692 0.391927 TCCCGAGTTGTTTATGCCCG 60.392 55.000 0.00 0.00 0.00 6.13
658 693 1.092348 GTCCCGAGTTGTTTATGCCC 58.908 55.000 0.00 0.00 0.00 5.36
659 694 2.007608 GAGTCCCGAGTTGTTTATGCC 58.992 52.381 0.00 0.00 0.00 4.40
660 695 2.930682 GAGAGTCCCGAGTTGTTTATGC 59.069 50.000 0.00 0.00 0.00 3.14
661 696 4.425520 GAGAGAGTCCCGAGTTGTTTATG 58.574 47.826 0.00 0.00 0.00 1.90
663 698 2.824341 GGAGAGAGTCCCGAGTTGTTTA 59.176 50.000 0.00 0.00 39.88 2.01
664 699 1.619332 GGAGAGAGTCCCGAGTTGTTT 59.381 52.381 0.00 0.00 39.88 2.83
706 746 2.350985 GATCGTCGGAGTCGTCGC 60.351 66.667 0.00 0.00 44.74 5.19
751 792 1.815421 CCTTGCGAGGAATGTCGGG 60.815 63.158 15.76 0.00 46.74 5.14
771 812 1.060698 GACGAATGCGAGTAAAGGTGC 59.939 52.381 0.00 0.00 41.64 5.01
772 813 2.599082 GAGACGAATGCGAGTAAAGGTG 59.401 50.000 0.00 0.00 41.64 4.00
773 814 2.731341 CGAGACGAATGCGAGTAAAGGT 60.731 50.000 0.00 0.00 41.64 3.50
775 816 1.846782 CCGAGACGAATGCGAGTAAAG 59.153 52.381 0.00 0.00 41.64 1.85
776 817 1.904144 CCGAGACGAATGCGAGTAAA 58.096 50.000 0.00 0.00 41.64 2.01
777 818 0.524816 GCCGAGACGAATGCGAGTAA 60.525 55.000 0.00 0.00 41.64 2.24
779 827 2.202623 GCCGAGACGAATGCGAGT 60.203 61.111 0.00 0.00 41.64 4.18
783 831 1.941734 CGAGAGCCGAGACGAATGC 60.942 63.158 0.00 0.00 41.76 3.56
799 847 0.522180 GAGAGCAGAAACTCGGACGA 59.478 55.000 0.00 0.00 41.77 4.20
804 852 5.406649 AGTGAAATAGAGAGCAGAAACTCG 58.593 41.667 0.00 0.00 41.77 4.18
806 854 6.169800 GGAAGTGAAATAGAGAGCAGAAACT 58.830 40.000 0.00 0.00 0.00 2.66
807 855 5.062809 CGGAAGTGAAATAGAGAGCAGAAAC 59.937 44.000 0.00 0.00 0.00 2.78
808 856 5.171476 CGGAAGTGAAATAGAGAGCAGAAA 58.829 41.667 0.00 0.00 0.00 2.52
811 859 2.863137 GCGGAAGTGAAATAGAGAGCAG 59.137 50.000 0.00 0.00 0.00 4.24
813 861 1.855360 CGCGGAAGTGAAATAGAGAGC 59.145 52.381 0.00 0.00 46.66 4.09
814 862 2.464865 CCGCGGAAGTGAAATAGAGAG 58.535 52.381 24.07 0.00 46.66 3.20
815 863 1.136305 CCCGCGGAAGTGAAATAGAGA 59.864 52.381 30.73 0.00 46.66 3.10
816 864 1.136305 TCCCGCGGAAGTGAAATAGAG 59.864 52.381 30.73 4.53 46.66 2.43
817 865 1.134907 GTCCCGCGGAAGTGAAATAGA 60.135 52.381 30.73 8.18 46.66 1.98
819 867 0.458889 CGTCCCGCGGAAGTGAAATA 60.459 55.000 30.73 0.00 46.66 1.40
820 868 1.740296 CGTCCCGCGGAAGTGAAAT 60.740 57.895 30.73 0.00 46.66 2.17
821 869 2.356553 CGTCCCGCGGAAGTGAAA 60.357 61.111 30.73 0.00 46.66 2.69
832 880 3.299977 TCACCACACTCCGTCCCG 61.300 66.667 0.00 0.00 0.00 5.14
833 881 2.342648 GTCACCACACTCCGTCCC 59.657 66.667 0.00 0.00 0.00 4.46
835 883 2.049433 CGGTCACCACACTCCGTC 60.049 66.667 0.00 0.00 38.45 4.79
836 884 3.612681 CCGGTCACCACACTCCGT 61.613 66.667 0.00 0.00 41.17 4.69
837 885 3.282745 CTCCGGTCACCACACTCCG 62.283 68.421 0.00 0.00 42.22 4.63
838 886 2.657237 CTCCGGTCACCACACTCC 59.343 66.667 0.00 0.00 0.00 3.85
846 894 4.500116 GCTCGCTCCTCCGGTCAC 62.500 72.222 0.00 0.00 0.00 3.67
869 917 4.547367 GAGCACCCGGGGGAATCG 62.547 72.222 32.21 7.48 38.96 3.34
870 918 1.415672 TATGAGCACCCGGGGGAATC 61.416 60.000 32.21 24.26 38.96 2.52
871 919 0.991355 TTATGAGCACCCGGGGGAAT 60.991 55.000 32.21 19.15 38.96 3.01
872 920 0.991355 ATTATGAGCACCCGGGGGAA 60.991 55.000 32.21 12.57 38.96 3.97
873 921 1.385347 ATTATGAGCACCCGGGGGA 60.385 57.895 32.21 5.78 38.96 4.81
874 922 1.073199 GATTATGAGCACCCGGGGG 59.927 63.158 27.92 25.22 42.03 5.40
875 923 0.250467 CAGATTATGAGCACCCGGGG 60.250 60.000 27.92 12.73 0.00 5.73
877 925 0.886490 GGCAGATTATGAGCACCCGG 60.886 60.000 0.00 0.00 0.00 5.73
878 926 0.179048 TGGCAGATTATGAGCACCCG 60.179 55.000 0.00 0.00 0.00 5.28
879 927 1.602311 CTGGCAGATTATGAGCACCC 58.398 55.000 9.42 0.00 0.00 4.61
880 928 0.950116 GCTGGCAGATTATGAGCACC 59.050 55.000 20.86 0.00 30.84 5.01
882 930 0.465287 TCGCTGGCAGATTATGAGCA 59.535 50.000 20.86 0.00 30.03 4.26
884 932 2.411069 CGAATCGCTGGCAGATTATGAG 59.589 50.000 20.86 0.00 38.32 2.90
887 935 1.070758 ACCGAATCGCTGGCAGATTAT 59.929 47.619 20.86 4.70 38.32 1.28
888 936 0.464036 ACCGAATCGCTGGCAGATTA 59.536 50.000 20.86 2.10 38.32 1.75
889 937 1.091771 CACCGAATCGCTGGCAGATT 61.092 55.000 20.86 10.36 40.63 2.40
890 938 1.522355 CACCGAATCGCTGGCAGAT 60.522 57.895 20.86 0.07 0.00 2.90
891 939 2.125552 CACCGAATCGCTGGCAGA 60.126 61.111 20.86 0.00 0.00 4.26
895 943 4.473520 AGGCCACCGAATCGCTGG 62.474 66.667 12.32 12.32 35.89 4.85
896 944 2.859273 AAGAGGCCACCGAATCGCTG 62.859 60.000 5.01 0.00 0.00 5.18
897 945 2.579684 GAAGAGGCCACCGAATCGCT 62.580 60.000 5.01 0.00 0.00 4.93
901 949 1.826385 CAAAGAAGAGGCCACCGAAT 58.174 50.000 5.01 0.00 0.00 3.34
902 950 0.889186 GCAAAGAAGAGGCCACCGAA 60.889 55.000 5.01 0.00 0.00 4.30
903 951 1.302511 GCAAAGAAGAGGCCACCGA 60.303 57.895 5.01 0.00 0.00 4.69
904 952 2.335712 GGCAAAGAAGAGGCCACCG 61.336 63.158 5.01 0.00 46.92 4.94
905 953 3.686760 GGCAAAGAAGAGGCCACC 58.313 61.111 5.01 0.00 46.92 4.61
908 956 2.034221 ACGGGCAAAGAAGAGGCC 59.966 61.111 0.00 0.00 46.99 5.19
909 957 2.982744 GCACGGGCAAAGAAGAGGC 61.983 63.158 3.77 0.00 40.72 4.70
910 958 2.680913 CGCACGGGCAAAGAAGAGG 61.681 63.158 11.77 0.00 41.24 3.69
1015 1087 4.272018 CAGCCACATAGTTAAGCAGTGATC 59.728 45.833 0.00 0.00 32.14 2.92
1043 1115 4.857871 TTTACAACAGCATCATACGAGC 57.142 40.909 0.00 0.00 0.00 5.03
1067 1139 7.284489 AGGATAAGAACTCTACAGTCTGATGAC 59.716 40.741 6.91 0.00 43.22 3.06
1068 1140 7.350382 AGGATAAGAACTCTACAGTCTGATGA 58.650 38.462 6.91 3.32 29.93 2.92
1069 1141 7.581213 AGGATAAGAACTCTACAGTCTGATG 57.419 40.000 6.91 0.00 29.93 3.07
1070 1142 9.349713 CTTAGGATAAGAACTCTACAGTCTGAT 57.650 37.037 6.91 0.00 29.93 2.90
1071 1143 8.549731 TCTTAGGATAAGAACTCTACAGTCTGA 58.450 37.037 6.91 0.00 29.93 3.27
1072 1144 8.740123 TCTTAGGATAAGAACTCTACAGTCTG 57.260 38.462 0.00 0.00 29.93 3.51
1073 1145 8.774183 TCTCTTAGGATAAGAACTCTACAGTCT 58.226 37.037 1.28 0.00 29.93 3.24
1074 1146 8.967664 TCTCTTAGGATAAGAACTCTACAGTC 57.032 38.462 1.28 0.00 29.93 3.51
1075 1147 7.501225 GCTCTCTTAGGATAAGAACTCTACAGT 59.499 40.741 1.28 0.00 0.00 3.55
1076 1148 7.040686 GGCTCTCTTAGGATAAGAACTCTACAG 60.041 44.444 1.28 0.00 0.00 2.74
1077 1149 6.773685 GGCTCTCTTAGGATAAGAACTCTACA 59.226 42.308 1.28 0.00 0.00 2.74
1078 1150 7.002276 AGGCTCTCTTAGGATAAGAACTCTAC 58.998 42.308 1.28 0.00 0.00 2.59
1079 1151 7.156694 AGGCTCTCTTAGGATAAGAACTCTA 57.843 40.000 1.28 0.00 0.00 2.43
1080 1152 6.025793 AGGCTCTCTTAGGATAAGAACTCT 57.974 41.667 1.28 0.00 0.00 3.24
1092 1164 2.485814 GCAAACACCAAGGCTCTCTTAG 59.514 50.000 0.00 0.00 33.68 2.18
1094 1166 1.322442 GCAAACACCAAGGCTCTCTT 58.678 50.000 0.00 0.00 35.79 2.85
1095 1167 0.183492 TGCAAACACCAAGGCTCTCT 59.817 50.000 0.00 0.00 0.00 3.10
1097 1169 1.458639 GCTGCAAACACCAAGGCTCT 61.459 55.000 0.00 0.00 0.00 4.09
1099 1171 2.848858 CGCTGCAAACACCAAGGCT 61.849 57.895 0.00 0.00 0.00 4.58
1100 1172 2.355009 CGCTGCAAACACCAAGGC 60.355 61.111 0.00 0.00 0.00 4.35
1101 1173 1.008538 GACGCTGCAAACACCAAGG 60.009 57.895 0.00 0.00 0.00 3.61
1137 1209 1.685224 CTGCCAGCCCTTGAGGTTA 59.315 57.895 0.00 0.00 38.26 2.85
1316 1388 9.397280 CACTCGATATTGATAAGAGAGGGTATA 57.603 37.037 11.35 0.00 33.53 1.47
1317 1389 7.891183 ACACTCGATATTGATAAGAGAGGGTAT 59.109 37.037 11.35 0.00 38.87 2.73
1318 1390 7.175119 CACACTCGATATTGATAAGAGAGGGTA 59.825 40.741 11.35 0.00 38.64 3.69
1319 1391 6.015856 CACACTCGATATTGATAAGAGAGGGT 60.016 42.308 11.35 7.75 40.99 4.34
1320 1392 6.385843 CACACTCGATATTGATAAGAGAGGG 58.614 44.000 11.35 7.30 34.19 4.30
1321 1393 5.861251 GCACACTCGATATTGATAAGAGAGG 59.139 44.000 11.35 7.31 33.53 3.69
1325 1397 6.149129 ACAGCACACTCGATATTGATAAGA 57.851 37.500 0.00 0.00 0.00 2.10
1333 1410 5.294306 CCAAACATAACAGCACACTCGATAT 59.706 40.000 0.00 0.00 0.00 1.63
1334 1411 4.629634 CCAAACATAACAGCACACTCGATA 59.370 41.667 0.00 0.00 0.00 2.92
1339 1416 3.550820 TGTCCAAACATAACAGCACACT 58.449 40.909 0.00 0.00 0.00 3.55
1415 1492 8.268878 AGCAACCATTCCTATAGAAATCTAGT 57.731 34.615 0.00 0.00 38.21 2.57
1416 1493 7.543868 CGAGCAACCATTCCTATAGAAATCTAG 59.456 40.741 0.00 0.00 38.21 2.43
1417 1494 7.232737 TCGAGCAACCATTCCTATAGAAATCTA 59.767 37.037 0.00 0.00 38.21 1.98
1424 1501 7.819415 TCAATAATCGAGCAACCATTCCTATAG 59.181 37.037 0.00 0.00 0.00 1.31
1431 1508 6.092748 GTGTTTCAATAATCGAGCAACCATT 58.907 36.000 0.00 0.00 0.00 3.16
1606 1686 5.189180 AGGAATCAATCTAGAACAAGTGCC 58.811 41.667 0.00 0.00 0.00 5.01
1610 1690 9.403110 CAACAAAAGGAATCAATCTAGAACAAG 57.597 33.333 0.00 0.00 0.00 3.16
1727 1808 4.351192 CAAACTGGTAAAAGACAGTGTGC 58.649 43.478 0.00 0.00 46.49 4.57
1729 1810 5.221048 GCATCAAACTGGTAAAAGACAGTGT 60.221 40.000 0.00 0.00 46.49 3.55
1730 1811 5.215160 GCATCAAACTGGTAAAAGACAGTG 58.785 41.667 0.00 0.00 46.49 3.66
1732 1813 5.437289 TGCATCAAACTGGTAAAAGACAG 57.563 39.130 0.00 0.00 40.48 3.51
1733 1814 5.843673 TTGCATCAAACTGGTAAAAGACA 57.156 34.783 0.00 0.00 0.00 3.41
1735 1816 6.202570 GCAAATTGCATCAAACTGGTAAAAGA 59.797 34.615 13.73 0.00 44.26 2.52
1737 1818 6.297694 GCAAATTGCATCAAACTGGTAAAA 57.702 33.333 13.73 0.00 44.26 1.52
1752 1833 5.524646 AGTTTGCCATGTATATGCAAATTGC 59.475 36.000 18.01 11.58 45.29 3.56
1753 1834 6.757478 TCAGTTTGCCATGTATATGCAAATTG 59.243 34.615 23.45 23.45 41.84 2.32
1754 1835 6.876155 TCAGTTTGCCATGTATATGCAAATT 58.124 32.000 18.01 13.04 39.77 1.82
1756 1837 5.911378 TCAGTTTGCCATGTATATGCAAA 57.089 34.783 13.03 13.03 37.66 3.68
1757 1838 5.651576 TCTTCAGTTTGCCATGTATATGCAA 59.348 36.000 0.00 2.64 32.43 4.08
1758 1839 5.192176 TCTTCAGTTTGCCATGTATATGCA 58.808 37.500 0.00 0.00 32.79 3.96
1760 1841 8.382030 TGTATCTTCAGTTTGCCATGTATATG 57.618 34.615 0.00 0.00 0.00 1.78
1762 1843 6.483307 GCTGTATCTTCAGTTTGCCATGTATA 59.517 38.462 0.00 0.00 37.70 1.47
1763 1844 5.297776 GCTGTATCTTCAGTTTGCCATGTAT 59.702 40.000 0.00 0.00 37.70 2.29
1764 1845 4.635765 GCTGTATCTTCAGTTTGCCATGTA 59.364 41.667 0.00 0.00 37.70 2.29
1767 1848 3.944015 GAGCTGTATCTTCAGTTTGCCAT 59.056 43.478 0.00 0.00 37.70 4.40
1768 1849 3.008375 AGAGCTGTATCTTCAGTTTGCCA 59.992 43.478 0.00 0.00 37.70 4.92
1769 1850 3.604582 AGAGCTGTATCTTCAGTTTGCC 58.395 45.455 0.00 0.00 37.70 4.52
1771 1852 5.988561 GGGATAGAGCTGTATCTTCAGTTTG 59.011 44.000 25.24 0.00 37.70 2.93
1772 1853 5.902431 AGGGATAGAGCTGTATCTTCAGTTT 59.098 40.000 25.24 5.90 37.70 2.66
1773 1854 5.463154 AGGGATAGAGCTGTATCTTCAGTT 58.537 41.667 25.24 7.02 37.70 3.16
1774 1855 5.073437 AGGGATAGAGCTGTATCTTCAGT 57.927 43.478 25.24 7.66 37.70 3.41
1775 1856 5.183713 CAGAGGGATAGAGCTGTATCTTCAG 59.816 48.000 25.24 17.18 38.35 3.02
1777 1858 5.076873 ACAGAGGGATAGAGCTGTATCTTC 58.923 45.833 25.24 21.79 39.61 2.87
1778 1859 5.073437 ACAGAGGGATAGAGCTGTATCTT 57.927 43.478 25.24 16.26 39.61 2.40
1779 1860 4.353788 AGACAGAGGGATAGAGCTGTATCT 59.646 45.833 25.24 10.82 41.30 1.98
1780 1861 4.662278 AGACAGAGGGATAGAGCTGTATC 58.338 47.826 20.01 20.01 41.30 2.24
1781 1862 4.740154 AGACAGAGGGATAGAGCTGTAT 57.260 45.455 2.43 2.43 41.30 2.29
1782 1863 5.515710 CCATAGACAGAGGGATAGAGCTGTA 60.516 48.000 0.00 0.00 41.30 2.74
1783 1864 4.406456 CATAGACAGAGGGATAGAGCTGT 58.594 47.826 0.00 0.00 43.67 4.40
1784 1865 3.763360 CCATAGACAGAGGGATAGAGCTG 59.237 52.174 0.00 0.00 34.65 4.24
1785 1866 3.660177 TCCATAGACAGAGGGATAGAGCT 59.340 47.826 0.00 0.00 0.00 4.09
1786 1867 3.761752 GTCCATAGACAGAGGGATAGAGC 59.238 52.174 0.00 0.00 42.99 4.09
1787 1868 5.255397 AGTCCATAGACAGAGGGATAGAG 57.745 47.826 0.00 0.00 46.15 2.43
1788 1869 5.458362 GGAAGTCCATAGACAGAGGGATAGA 60.458 48.000 0.00 0.00 46.15 1.98
1789 1870 4.770010 GGAAGTCCATAGACAGAGGGATAG 59.230 50.000 0.00 0.00 46.15 2.08
1790 1871 4.420552 AGGAAGTCCATAGACAGAGGGATA 59.579 45.833 0.00 0.00 46.15 2.59
1791 1872 3.208692 AGGAAGTCCATAGACAGAGGGAT 59.791 47.826 0.00 0.00 46.15 3.85
1792 1873 2.587777 AGGAAGTCCATAGACAGAGGGA 59.412 50.000 0.00 0.00 46.15 4.20
1793 1874 3.039252 AGGAAGTCCATAGACAGAGGG 57.961 52.381 0.00 0.00 46.15 4.30
1794 1875 4.026744 TGAAGGAAGTCCATAGACAGAGG 58.973 47.826 0.00 0.00 46.15 3.69
1795 1876 5.128499 ACATGAAGGAAGTCCATAGACAGAG 59.872 44.000 0.00 0.00 46.15 3.35
1796 1877 5.026121 ACATGAAGGAAGTCCATAGACAGA 58.974 41.667 0.00 0.00 46.15 3.41
1797 1878 5.128499 AGACATGAAGGAAGTCCATAGACAG 59.872 44.000 0.00 0.00 46.15 3.51
1798 1879 5.026121 AGACATGAAGGAAGTCCATAGACA 58.974 41.667 0.00 0.00 46.15 3.41
1799 1880 5.606348 AGACATGAAGGAAGTCCATAGAC 57.394 43.478 0.00 0.00 43.89 2.59
1800 1881 7.733773 TTTAGACATGAAGGAAGTCCATAGA 57.266 36.000 0.00 0.00 38.89 1.98
1801 1882 8.970859 ATTTTAGACATGAAGGAAGTCCATAG 57.029 34.615 0.00 0.00 38.89 2.23
1803 1884 7.500559 GCTATTTTAGACATGAAGGAAGTCCAT 59.499 37.037 0.00 0.00 38.89 3.41
1804 1885 6.823689 GCTATTTTAGACATGAAGGAAGTCCA 59.176 38.462 0.00 0.00 38.89 4.02
1805 1886 7.051000 AGCTATTTTAGACATGAAGGAAGTCC 58.949 38.462 0.00 0.00 32.82 3.85
1806 1887 8.394121 CAAGCTATTTTAGACATGAAGGAAGTC 58.606 37.037 0.00 0.00 0.00 3.01
1807 1888 7.885399 ACAAGCTATTTTAGACATGAAGGAAGT 59.115 33.333 0.00 0.00 0.00 3.01
1808 1889 8.273780 ACAAGCTATTTTAGACATGAAGGAAG 57.726 34.615 0.00 0.00 0.00 3.46
1809 1890 8.514594 CAACAAGCTATTTTAGACATGAAGGAA 58.485 33.333 0.00 0.00 0.00 3.36
1810 1891 7.665559 ACAACAAGCTATTTTAGACATGAAGGA 59.334 33.333 0.00 0.00 0.00 3.36
1811 1892 7.820648 ACAACAAGCTATTTTAGACATGAAGG 58.179 34.615 0.00 0.00 0.00 3.46
1812 1893 9.760660 GTACAACAAGCTATTTTAGACATGAAG 57.239 33.333 0.00 0.00 0.00 3.02
1813 1894 9.278978 TGTACAACAAGCTATTTTAGACATGAA 57.721 29.630 0.00 0.00 0.00 2.57
1814 1895 8.840833 TGTACAACAAGCTATTTTAGACATGA 57.159 30.769 0.00 0.00 0.00 3.07
1817 1898 8.511321 CCAATGTACAACAAGCTATTTTAGACA 58.489 33.333 0.00 0.00 0.00 3.41
1818 1899 8.512138 ACCAATGTACAACAAGCTATTTTAGAC 58.488 33.333 0.00 0.00 0.00 2.59
1819 1900 8.630054 ACCAATGTACAACAAGCTATTTTAGA 57.370 30.769 0.00 0.00 0.00 2.10
1820 1901 9.341899 GAACCAATGTACAACAAGCTATTTTAG 57.658 33.333 0.00 0.00 0.00 1.85
1821 1902 8.018520 CGAACCAATGTACAACAAGCTATTTTA 58.981 33.333 0.00 0.00 0.00 1.52
1822 1903 6.861055 CGAACCAATGTACAACAAGCTATTTT 59.139 34.615 0.00 0.00 0.00 1.82
1823 1904 6.016610 ACGAACCAATGTACAACAAGCTATTT 60.017 34.615 0.00 0.00 0.00 1.40
1824 1905 5.472137 ACGAACCAATGTACAACAAGCTATT 59.528 36.000 0.00 0.00 0.00 1.73
1825 1906 5.001232 ACGAACCAATGTACAACAAGCTAT 58.999 37.500 0.00 0.00 0.00 2.97
1826 1907 4.382291 ACGAACCAATGTACAACAAGCTA 58.618 39.130 0.00 0.00 0.00 3.32
1827 1908 3.211045 ACGAACCAATGTACAACAAGCT 58.789 40.909 0.00 0.00 0.00 3.74
1828 1909 3.619233 ACGAACCAATGTACAACAAGC 57.381 42.857 0.00 0.00 0.00 4.01
1829 1910 4.915704 ACAACGAACCAATGTACAACAAG 58.084 39.130 0.00 0.00 0.00 3.16
1830 1911 4.966965 ACAACGAACCAATGTACAACAA 57.033 36.364 0.00 0.00 0.00 2.83
1831 1912 5.358090 TCTACAACGAACCAATGTACAACA 58.642 37.500 0.00 0.00 0.00 3.33
1832 1913 5.910637 TCTACAACGAACCAATGTACAAC 57.089 39.130 0.00 0.00 0.00 3.32
1833 1914 8.661257 CATATTCTACAACGAACCAATGTACAA 58.339 33.333 0.00 0.00 0.00 2.41
1834 1915 7.820386 ACATATTCTACAACGAACCAATGTACA 59.180 33.333 0.00 0.00 29.59 2.90
1835 1916 8.193250 ACATATTCTACAACGAACCAATGTAC 57.807 34.615 0.00 0.00 29.59 2.90
1836 1917 9.304731 GTACATATTCTACAACGAACCAATGTA 57.695 33.333 0.00 0.00 31.81 2.29
1837 1918 8.038944 AGTACATATTCTACAACGAACCAATGT 58.961 33.333 0.00 0.00 32.99 2.71
1838 1919 8.420374 AGTACATATTCTACAACGAACCAATG 57.580 34.615 0.00 0.00 0.00 2.82
1839 1920 9.444600 AAAGTACATATTCTACAACGAACCAAT 57.555 29.630 0.00 0.00 0.00 3.16
1840 1921 8.836268 AAAGTACATATTCTACAACGAACCAA 57.164 30.769 0.00 0.00 0.00 3.67
1841 1922 8.836268 AAAAGTACATATTCTACAACGAACCA 57.164 30.769 0.00 0.00 0.00 3.67
1842 1923 8.385858 GGAAAAGTACATATTCTACAACGAACC 58.614 37.037 0.00 0.00 0.00 3.62
1843 1924 9.148104 AGGAAAAGTACATATTCTACAACGAAC 57.852 33.333 0.00 0.00 0.00 3.95
1844 1925 9.146984 CAGGAAAAGTACATATTCTACAACGAA 57.853 33.333 0.00 0.00 0.00 3.85
1845 1926 8.308931 ACAGGAAAAGTACATATTCTACAACGA 58.691 33.333 0.00 0.00 0.00 3.85
1846 1927 8.475331 ACAGGAAAAGTACATATTCTACAACG 57.525 34.615 0.00 0.00 0.00 4.10
1855 1936 9.832445 CCACATACTAACAGGAAAAGTACATAT 57.168 33.333 0.00 0.00 0.00 1.78
1856 1937 8.818860 ACCACATACTAACAGGAAAAGTACATA 58.181 33.333 0.00 0.00 0.00 2.29
1857 1938 7.686434 ACCACATACTAACAGGAAAAGTACAT 58.314 34.615 0.00 0.00 0.00 2.29
1858 1939 7.069877 ACCACATACTAACAGGAAAAGTACA 57.930 36.000 0.00 0.00 0.00 2.90
1859 1940 7.974482 AACCACATACTAACAGGAAAAGTAC 57.026 36.000 0.00 0.00 0.00 2.73
1860 1941 7.994334 ACAAACCACATACTAACAGGAAAAGTA 59.006 33.333 0.00 0.00 0.00 2.24
1861 1942 6.831868 ACAAACCACATACTAACAGGAAAAGT 59.168 34.615 0.00 0.00 0.00 2.66
1862 1943 7.272037 ACAAACCACATACTAACAGGAAAAG 57.728 36.000 0.00 0.00 0.00 2.27
1863 1944 7.648039 AACAAACCACATACTAACAGGAAAA 57.352 32.000 0.00 0.00 0.00 2.29
1864 1945 7.467539 CGAAACAAACCACATACTAACAGGAAA 60.468 37.037 0.00 0.00 0.00 3.13
1865 1946 6.017770 CGAAACAAACCACATACTAACAGGAA 60.018 38.462 0.00 0.00 0.00 3.36
1866 1947 5.467399 CGAAACAAACCACATACTAACAGGA 59.533 40.000 0.00 0.00 0.00 3.86
1867 1948 5.334569 CCGAAACAAACCACATACTAACAGG 60.335 44.000 0.00 0.00 0.00 4.00
1868 1949 5.467399 TCCGAAACAAACCACATACTAACAG 59.533 40.000 0.00 0.00 0.00 3.16
1869 1950 5.236911 GTCCGAAACAAACCACATACTAACA 59.763 40.000 0.00 0.00 0.00 2.41
1870 1951 5.236911 TGTCCGAAACAAACCACATACTAAC 59.763 40.000 0.00 0.00 34.03 2.34
1871 1952 5.366460 TGTCCGAAACAAACCACATACTAA 58.634 37.500 0.00 0.00 34.03 2.24
1872 1953 4.958509 TGTCCGAAACAAACCACATACTA 58.041 39.130 0.00 0.00 34.03 1.82
1873 1954 3.811083 TGTCCGAAACAAACCACATACT 58.189 40.909 0.00 0.00 34.03 2.12
1874 1955 3.562557 ACTGTCCGAAACAAACCACATAC 59.437 43.478 0.00 0.00 37.45 2.39
1875 1956 3.562141 CACTGTCCGAAACAAACCACATA 59.438 43.478 0.00 0.00 37.45 2.29
1876 1957 2.357637 CACTGTCCGAAACAAACCACAT 59.642 45.455 0.00 0.00 37.45 3.21
1877 1958 1.740585 CACTGTCCGAAACAAACCACA 59.259 47.619 0.00 0.00 37.45 4.17
1878 1959 1.064952 CCACTGTCCGAAACAAACCAC 59.935 52.381 0.00 0.00 37.45 4.16
1879 1960 1.065345 TCCACTGTCCGAAACAAACCA 60.065 47.619 0.00 0.00 37.45 3.67
1880 1961 1.332686 GTCCACTGTCCGAAACAAACC 59.667 52.381 0.00 0.00 37.45 3.27
1881 1962 2.011222 TGTCCACTGTCCGAAACAAAC 58.989 47.619 0.00 0.00 37.45 2.93
1882 1963 2.404923 TGTCCACTGTCCGAAACAAA 57.595 45.000 0.00 0.00 37.45 2.83
1883 1964 2.631160 ATGTCCACTGTCCGAAACAA 57.369 45.000 0.00 0.00 37.45 2.83
1884 1965 3.755112 TTATGTCCACTGTCCGAAACA 57.245 42.857 0.00 0.00 36.18 2.83
1885 1966 4.330074 CAGATTATGTCCACTGTCCGAAAC 59.670 45.833 0.00 0.00 0.00 2.78
1886 1967 4.503910 CAGATTATGTCCACTGTCCGAAA 58.496 43.478 0.00 0.00 0.00 3.46
1887 1968 3.678806 GCAGATTATGTCCACTGTCCGAA 60.679 47.826 0.00 0.00 33.57 4.30
1888 1969 2.159099 GCAGATTATGTCCACTGTCCGA 60.159 50.000 0.00 0.00 33.57 4.55
1889 1970 2.205074 GCAGATTATGTCCACTGTCCG 58.795 52.381 0.00 0.00 33.57 4.79
1890 1971 3.266510 TGCAGATTATGTCCACTGTCC 57.733 47.619 0.00 0.00 33.57 4.02
1891 1972 4.095483 CCTTTGCAGATTATGTCCACTGTC 59.905 45.833 0.00 0.00 33.57 3.51
1892 1973 4.012374 CCTTTGCAGATTATGTCCACTGT 58.988 43.478 0.00 0.00 33.57 3.55
1893 1974 4.264253 TCCTTTGCAGATTATGTCCACTG 58.736 43.478 0.00 0.00 0.00 3.66
1894 1975 4.574674 TCCTTTGCAGATTATGTCCACT 57.425 40.909 0.00 0.00 0.00 4.00
1895 1976 5.841957 AATCCTTTGCAGATTATGTCCAC 57.158 39.130 0.00 0.00 32.20 4.02
1896 1977 5.951148 TCAAATCCTTTGCAGATTATGTCCA 59.049 36.000 0.55 0.00 40.43 4.02
1897 1978 6.455360 TCAAATCCTTTGCAGATTATGTCC 57.545 37.500 0.55 0.00 40.43 4.02
1898 1979 9.060347 TCTATCAAATCCTTTGCAGATTATGTC 57.940 33.333 0.55 0.00 40.43 3.06
1899 1980 8.985315 TCTATCAAATCCTTTGCAGATTATGT 57.015 30.769 0.55 0.00 40.43 2.29
1904 1985 9.412460 TGTATTTCTATCAAATCCTTTGCAGAT 57.588 29.630 0.00 0.00 40.43 2.90
1905 1986 8.806429 TGTATTTCTATCAAATCCTTTGCAGA 57.194 30.769 0.00 0.00 40.43 4.26
1906 1987 8.133627 CCTGTATTTCTATCAAATCCTTTGCAG 58.866 37.037 0.00 0.00 40.43 4.41
1907 1988 7.068593 CCCTGTATTTCTATCAAATCCTTTGCA 59.931 37.037 0.00 0.00 40.43 4.08
1908 1989 7.068716 ACCCTGTATTTCTATCAAATCCTTTGC 59.931 37.037 0.00 0.00 40.43 3.68
1909 1990 8.525290 ACCCTGTATTTCTATCAAATCCTTTG 57.475 34.615 0.00 0.00 41.96 2.77
1910 1991 9.190317 GAACCCTGTATTTCTATCAAATCCTTT 57.810 33.333 0.00 0.00 0.00 3.11
1911 1992 8.336235 TGAACCCTGTATTTCTATCAAATCCTT 58.664 33.333 0.00 0.00 0.00 3.36
1912 1993 7.872138 TGAACCCTGTATTTCTATCAAATCCT 58.128 34.615 0.00 0.00 0.00 3.24
1913 1994 8.697507 ATGAACCCTGTATTTCTATCAAATCC 57.302 34.615 0.00 0.00 0.00 3.01
1919 2000 8.940952 GCTTCATATGAACCCTGTATTTCTATC 58.059 37.037 14.23 0.00 0.00 2.08
1920 2001 8.439971 TGCTTCATATGAACCCTGTATTTCTAT 58.560 33.333 14.23 0.00 0.00 1.98
1921 2002 7.801104 TGCTTCATATGAACCCTGTATTTCTA 58.199 34.615 14.23 0.00 0.00 2.10
1922 2003 6.662755 TGCTTCATATGAACCCTGTATTTCT 58.337 36.000 14.23 0.00 0.00 2.52
1923 2004 6.942532 TGCTTCATATGAACCCTGTATTTC 57.057 37.500 14.23 0.00 0.00 2.17
1924 2005 7.902920 AATGCTTCATATGAACCCTGTATTT 57.097 32.000 14.23 0.00 0.00 1.40
1925 2006 7.342799 ACAAATGCTTCATATGAACCCTGTATT 59.657 33.333 14.23 12.15 0.00 1.89
1926 2007 6.835488 ACAAATGCTTCATATGAACCCTGTAT 59.165 34.615 14.23 7.05 0.00 2.29
1927 2008 6.186957 ACAAATGCTTCATATGAACCCTGTA 58.813 36.000 14.23 5.00 0.00 2.74
1928 2009 5.018809 ACAAATGCTTCATATGAACCCTGT 58.981 37.500 14.23 10.13 0.00 4.00
1929 2010 5.587388 ACAAATGCTTCATATGAACCCTG 57.413 39.130 14.23 6.10 0.00 4.45
1930 2011 5.481473 ACAACAAATGCTTCATATGAACCCT 59.519 36.000 14.23 0.00 0.00 4.34
1931 2012 5.723295 ACAACAAATGCTTCATATGAACCC 58.277 37.500 14.23 8.87 0.00 4.11
1932 2013 7.312154 TGTACAACAAATGCTTCATATGAACC 58.688 34.615 14.23 8.83 0.00 3.62
1933 2014 8.915871 ATGTACAACAAATGCTTCATATGAAC 57.084 30.769 14.23 11.51 0.00 3.18
1934 2015 9.356433 CAATGTACAACAAATGCTTCATATGAA 57.644 29.630 17.07 17.07 0.00 2.57
1935 2016 7.975058 CCAATGTACAACAAATGCTTCATATGA 59.025 33.333 0.00 0.00 0.00 2.15
1936 2017 7.760794 ACCAATGTACAACAAATGCTTCATATG 59.239 33.333 0.00 0.00 0.00 1.78
1937 2018 7.839907 ACCAATGTACAACAAATGCTTCATAT 58.160 30.769 0.00 0.00 0.00 1.78
1938 2019 7.225784 ACCAATGTACAACAAATGCTTCATA 57.774 32.000 0.00 0.00 0.00 2.15
1939 2020 6.100404 ACCAATGTACAACAAATGCTTCAT 57.900 33.333 0.00 0.00 0.00 2.57
1940 2021 5.528043 ACCAATGTACAACAAATGCTTCA 57.472 34.783 0.00 0.00 0.00 3.02
1941 2022 5.405269 GGAACCAATGTACAACAAATGCTTC 59.595 40.000 0.00 0.00 0.00 3.86
1942 2023 5.070313 AGGAACCAATGTACAACAAATGCTT 59.930 36.000 0.00 0.00 0.00 3.91
1943 2024 4.588528 AGGAACCAATGTACAACAAATGCT 59.411 37.500 0.00 0.00 0.00 3.79
1944 2025 4.881920 AGGAACCAATGTACAACAAATGC 58.118 39.130 0.00 0.00 0.00 3.56
1945 2026 7.784633 AAAAGGAACCAATGTACAACAAATG 57.215 32.000 0.00 0.00 0.00 2.32
1946 2027 8.700973 AGTAAAAGGAACCAATGTACAACAAAT 58.299 29.630 0.00 0.00 0.00 2.32
1947 2028 8.068892 AGTAAAAGGAACCAATGTACAACAAA 57.931 30.769 0.00 0.00 0.00 2.83
1948 2029 7.648039 AGTAAAAGGAACCAATGTACAACAA 57.352 32.000 0.00 0.00 0.00 2.83
1949 2030 7.648039 AAGTAAAAGGAACCAATGTACAACA 57.352 32.000 0.00 0.00 0.00 3.33
1950 2031 8.936070 AAAAGTAAAAGGAACCAATGTACAAC 57.064 30.769 0.00 0.00 0.00 3.32
1954 2035 9.699703 GCAATAAAAGTAAAAGGAACCAATGTA 57.300 29.630 0.00 0.00 0.00 2.29
1955 2036 8.428852 AGCAATAAAAGTAAAAGGAACCAATGT 58.571 29.630 0.00 0.00 0.00 2.71
1956 2037 8.831715 AGCAATAAAAGTAAAAGGAACCAATG 57.168 30.769 0.00 0.00 0.00 2.82
1976 2057 8.680903 CCAAAGAAGAATGAACAGTATAGCAAT 58.319 33.333 0.00 0.00 0.00 3.56
1977 2058 7.882791 TCCAAAGAAGAATGAACAGTATAGCAA 59.117 33.333 0.00 0.00 0.00 3.91
1979 2060 7.849804 TCCAAAGAAGAATGAACAGTATAGC 57.150 36.000 0.00 0.00 0.00 2.97
2009 2090 9.082313 CCAGCTAAATAGGAACATAATTTGGAT 57.918 33.333 0.00 0.00 0.00 3.41
2010 2091 8.278639 TCCAGCTAAATAGGAACATAATTTGGA 58.721 33.333 0.00 0.00 0.00 3.53
2011 2092 8.463930 TCCAGCTAAATAGGAACATAATTTGG 57.536 34.615 0.00 0.00 0.00 3.28
2012 2093 9.125026 ACTCCAGCTAAATAGGAACATAATTTG 57.875 33.333 0.00 0.00 0.00 2.32
2013 2094 9.343539 GACTCCAGCTAAATAGGAACATAATTT 57.656 33.333 0.00 0.00 0.00 1.82
2014 2095 8.718656 AGACTCCAGCTAAATAGGAACATAATT 58.281 33.333 0.00 0.00 0.00 1.40
2015 2096 8.268878 AGACTCCAGCTAAATAGGAACATAAT 57.731 34.615 0.00 0.00 0.00 1.28
2016 2097 7.676683 AGACTCCAGCTAAATAGGAACATAA 57.323 36.000 0.00 0.00 0.00 1.90
2017 2098 8.777578 TTAGACTCCAGCTAAATAGGAACATA 57.222 34.615 0.00 0.00 0.00 2.29
2018 2099 7.676683 TTAGACTCCAGCTAAATAGGAACAT 57.323 36.000 0.00 0.00 0.00 2.71
2019 2100 6.407074 GCTTAGACTCCAGCTAAATAGGAACA 60.407 42.308 0.00 0.00 32.87 3.18
2023 2104 5.799827 AGCTTAGACTCCAGCTAAATAGG 57.200 43.478 7.21 0.00 44.86 2.57
2024 2105 7.049799 AGAAGCTTAGACTCCAGCTAAATAG 57.950 40.000 0.00 0.00 46.01 1.73
2026 2107 5.948742 AGAAGCTTAGACTCCAGCTAAAT 57.051 39.130 0.00 0.00 46.01 1.40
2028 2109 5.163499 GCTAAGAAGCTTAGACTCCAGCTAA 60.163 44.000 16.16 0.00 46.01 3.09
2029 2110 4.339814 GCTAAGAAGCTTAGACTCCAGCTA 59.660 45.833 16.16 0.00 46.01 3.32
2045 2126 9.905713 AGTAACAATGGATATTCAAGCTAAGAA 57.094 29.630 4.24 4.24 0.00 2.52
2046 2127 9.330063 CAGTAACAATGGATATTCAAGCTAAGA 57.670 33.333 0.00 0.00 0.00 2.10
2047 2128 9.113838 ACAGTAACAATGGATATTCAAGCTAAG 57.886 33.333 0.00 0.00 0.00 2.18
2048 2129 9.461312 AACAGTAACAATGGATATTCAAGCTAA 57.539 29.630 0.00 0.00 0.00 3.09
2050 2131 7.944729 AACAGTAACAATGGATATTCAAGCT 57.055 32.000 0.00 0.00 0.00 3.74
2051 2132 9.884465 GATAACAGTAACAATGGATATTCAAGC 57.116 33.333 0.00 0.00 0.00 4.01
2056 2137 9.784531 CCTCAGATAACAGTAACAATGGATATT 57.215 33.333 0.00 0.00 0.00 1.28
2059 2140 6.058183 GCCTCAGATAACAGTAACAATGGAT 58.942 40.000 0.00 0.00 0.00 3.41
2060 2141 5.045942 TGCCTCAGATAACAGTAACAATGGA 60.046 40.000 0.00 0.00 0.00 3.41
2061 2142 5.065218 GTGCCTCAGATAACAGTAACAATGG 59.935 44.000 0.00 0.00 0.00 3.16
2062 2143 5.643348 TGTGCCTCAGATAACAGTAACAATG 59.357 40.000 0.00 0.00 0.00 2.82
2063 2144 5.643777 GTGTGCCTCAGATAACAGTAACAAT 59.356 40.000 0.00 0.00 0.00 2.71
2064 2145 4.994852 GTGTGCCTCAGATAACAGTAACAA 59.005 41.667 0.00 0.00 0.00 2.83
2066 2147 4.627467 CAGTGTGCCTCAGATAACAGTAAC 59.373 45.833 0.00 0.00 0.00 2.50
2068 2149 3.832490 ACAGTGTGCCTCAGATAACAGTA 59.168 43.478 0.00 0.00 0.00 2.74
2070 2151 3.056250 AGACAGTGTGCCTCAGATAACAG 60.056 47.826 0.00 0.00 0.00 3.16
2071 2152 2.899900 AGACAGTGTGCCTCAGATAACA 59.100 45.455 0.00 0.00 0.00 2.41
2075 2156 3.498774 AAAAGACAGTGTGCCTCAGAT 57.501 42.857 0.00 0.00 0.00 2.90
2076 2157 3.494398 GGTAAAAGACAGTGTGCCTCAGA 60.494 47.826 0.00 0.00 0.00 3.27
2079 2160 2.808543 CTGGTAAAAGACAGTGTGCCTC 59.191 50.000 0.00 0.00 0.00 4.70
2080 2161 2.172717 ACTGGTAAAAGACAGTGTGCCT 59.827 45.455 0.00 0.00 45.54 4.75
2081 2162 2.572290 ACTGGTAAAAGACAGTGTGCC 58.428 47.619 0.00 0.00 45.54 5.01
2144 2254 6.319048 AGAAGTCCACAGACAAATGGATAT 57.681 37.500 0.00 0.00 46.55 1.63
2302 2767 3.394719 GTCTGGTGAGAAGTTCCTTGAC 58.605 50.000 0.00 0.00 0.00 3.18
2476 2941 1.442526 GCATGCACATCGGGAGGAAG 61.443 60.000 14.21 0.00 0.00 3.46
2635 3100 2.801631 CCGCACCTCCTCCAGATCC 61.802 68.421 0.00 0.00 0.00 3.36
2651 3116 2.797278 CGATCCCCCAGTTCCTCCG 61.797 68.421 0.00 0.00 0.00 4.63
2697 3162 2.637872 TGGCCTAAAGTCTAAGCACTGT 59.362 45.455 3.32 0.00 0.00 3.55
2739 3204 7.601856 CAAGGCTGAAAAACCAAGATACATAA 58.398 34.615 0.00 0.00 0.00 1.90
2741 3206 5.567423 GCAAGGCTGAAAAACCAAGATACAT 60.567 40.000 0.00 0.00 0.00 2.29
2767 3233 4.857871 TCACAAAGAGAAACTGACAACG 57.142 40.909 0.00 0.00 0.00 4.10
2805 3271 2.935849 CTGTTAACATATCGGCAGCACA 59.064 45.455 9.13 0.00 0.00 4.57
2826 3292 5.820404 ACAGCTACCATACCCTATTTACC 57.180 43.478 0.00 0.00 0.00 2.85
2927 3393 8.439172 ACGAAGGGAGTAGAATAGTATAAGTCT 58.561 37.037 0.00 0.00 0.00 3.24
2942 3408 6.384886 ACTTATATTTGGGAACGAAGGGAGTA 59.615 38.462 0.00 0.00 37.08 2.59
2943 3409 5.191124 ACTTATATTTGGGAACGAAGGGAGT 59.809 40.000 0.00 0.00 37.08 3.85
2944 3410 5.681639 ACTTATATTTGGGAACGAAGGGAG 58.318 41.667 0.00 0.00 37.08 4.30
2945 3411 5.427481 AGACTTATATTTGGGAACGAAGGGA 59.573 40.000 0.00 0.00 37.08 4.20
2946 3412 5.681639 AGACTTATATTTGGGAACGAAGGG 58.318 41.667 0.00 0.00 37.08 3.95
2947 3413 7.553044 AGAAAGACTTATATTTGGGAACGAAGG 59.447 37.037 0.00 0.00 37.08 3.46
2948 3414 8.494016 AGAAAGACTTATATTTGGGAACGAAG 57.506 34.615 0.00 0.00 37.08 3.79
2949 3415 9.947433 TTAGAAAGACTTATATTTGGGAACGAA 57.053 29.630 0.00 0.00 38.33 3.85
2950 3416 9.374838 GTTAGAAAGACTTATATTTGGGAACGA 57.625 33.333 0.00 0.00 0.00 3.85
2951 3417 8.325997 CGTTAGAAAGACTTATATTTGGGAACG 58.674 37.037 0.00 0.00 0.00 3.95
2952 3418 9.374838 TCGTTAGAAAGACTTATATTTGGGAAC 57.625 33.333 0.00 0.00 0.00 3.62
2964 3430 8.936864 CACTTATTGGAATCGTTAGAAAGACTT 58.063 33.333 0.00 0.00 0.00 3.01
2965 3431 8.311836 TCACTTATTGGAATCGTTAGAAAGACT 58.688 33.333 0.00 0.00 0.00 3.24
2966 3432 8.381387 GTCACTTATTGGAATCGTTAGAAAGAC 58.619 37.037 0.00 0.00 0.00 3.01
2967 3433 8.311836 AGTCACTTATTGGAATCGTTAGAAAGA 58.688 33.333 0.00 0.00 0.00 2.52
2968 3434 8.480643 AGTCACTTATTGGAATCGTTAGAAAG 57.519 34.615 0.00 0.00 0.00 2.62
2997 3463 9.856488 GTGTAGATTCACTCATTTTACTCTGTA 57.144 33.333 0.00 0.00 35.68 2.74
2998 3464 8.589338 AGTGTAGATTCACTCATTTTACTCTGT 58.411 33.333 0.00 0.00 44.07 3.41
2999 3465 8.994429 AGTGTAGATTCACTCATTTTACTCTG 57.006 34.615 0.00 0.00 44.07 3.35
3048 3514 9.466497 AGACATTTCAAATGGACTACAACATAT 57.534 29.630 14.70 0.00 0.00 1.78
3049 3515 8.862325 AGACATTTCAAATGGACTACAACATA 57.138 30.769 14.70 0.00 0.00 2.29
3050 3516 7.765695 AGACATTTCAAATGGACTACAACAT 57.234 32.000 14.70 0.00 0.00 2.71
3051 3517 8.684386 TTAGACATTTCAAATGGACTACAACA 57.316 30.769 14.70 1.25 0.00 3.33
3052 3518 9.959749 TTTTAGACATTTCAAATGGACTACAAC 57.040 29.630 14.70 0.00 0.00 3.32
3057 3523 9.136323 AGTCTTTTTAGACATTTCAAATGGACT 57.864 29.630 14.70 14.18 41.02 3.85
3058 3524 9.750125 AAGTCTTTTTAGACATTTCAAATGGAC 57.250 29.630 14.70 8.92 41.02 4.02
3075 3541 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
3076 3542 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
3077 3543 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3078 3544 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3079 3545 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3080 3546 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3081 3547 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3082 3548 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3085 3551 8.759782 CAATATACTCCCTCCGTTCCTAAATAT 58.240 37.037 0.00 0.00 0.00 1.28
3086 3552 7.731688 ACAATATACTCCCTCCGTTCCTAAATA 59.268 37.037 0.00 0.00 0.00 1.40
3087 3553 6.557633 ACAATATACTCCCTCCGTTCCTAAAT 59.442 38.462 0.00 0.00 0.00 1.40
3088 3554 5.901276 ACAATATACTCCCTCCGTTCCTAAA 59.099 40.000 0.00 0.00 0.00 1.85
3089 3555 5.461327 ACAATATACTCCCTCCGTTCCTAA 58.539 41.667 0.00 0.00 0.00 2.69
3090 3556 5.070823 ACAATATACTCCCTCCGTTCCTA 57.929 43.478 0.00 0.00 0.00 2.94
3091 3557 3.924922 ACAATATACTCCCTCCGTTCCT 58.075 45.455 0.00 0.00 0.00 3.36
3092 3558 5.796424 TTACAATATACTCCCTCCGTTCC 57.204 43.478 0.00 0.00 0.00 3.62
3093 3559 8.557029 CAAAATTACAATATACTCCCTCCGTTC 58.443 37.037 0.00 0.00 0.00 3.95
3094 3560 8.269317 TCAAAATTACAATATACTCCCTCCGTT 58.731 33.333 0.00 0.00 0.00 4.44
3095 3561 7.798071 TCAAAATTACAATATACTCCCTCCGT 58.202 34.615 0.00 0.00 0.00 4.69
3096 3562 8.671384 TTCAAAATTACAATATACTCCCTCCG 57.329 34.615 0.00 0.00 0.00 4.63
3138 3604 1.293924 CACCGAGATTCAGCCATCAC 58.706 55.000 0.00 0.00 0.00 3.06
3173 3639 2.695666 ACCCTGGTGTATCTGAGATTCG 59.304 50.000 0.00 0.00 0.00 3.34
3192 3658 5.122396 CCTTGTTTCAAGCTGTAGTATGACC 59.878 44.000 4.22 0.00 0.00 4.02
3201 3667 5.659440 TTTTTCTCCTTGTTTCAAGCTGT 57.341 34.783 4.22 0.00 0.00 4.40
3268 3734 5.813513 AGAAAGTGGGATGAGCAAATTTT 57.186 34.783 0.00 0.00 0.00 1.82
3272 3738 3.831323 TGAAGAAAGTGGGATGAGCAAA 58.169 40.909 0.00 0.00 0.00 3.68
3526 3992 4.406649 TGAGCTGTCCATATTCTGATGTGA 59.593 41.667 0.00 0.00 0.00 3.58
3639 4106 2.354773 CGGGATAGCGACGAAGGC 60.355 66.667 0.00 0.00 0.00 4.35
3642 4109 1.452953 ATGCTCGGGATAGCGACGAA 61.453 55.000 0.00 0.00 45.85 3.85
3651 4118 3.627395 TCAAACAGTAATGCTCGGGAT 57.373 42.857 0.00 0.00 0.00 3.85
3657 4124 6.372659 ACTCGATGAAATCAAACAGTAATGCT 59.627 34.615 0.00 0.00 45.97 3.79
3660 4127 6.878923 TGGACTCGATGAAATCAAACAGTAAT 59.121 34.615 0.00 0.00 45.97 1.89
3663 4130 4.641396 TGGACTCGATGAAATCAAACAGT 58.359 39.130 0.00 0.00 45.97 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.