Multiple sequence alignment - TraesCS2B01G582800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G582800 chr2B 100.000 2058 0 0 921 2978 770186709 770184652 0.000000e+00 3801.0
1 TraesCS2B01G582800 chr2B 100.000 410 0 0 1 410 770187629 770187220 0.000000e+00 758.0
2 TraesCS2B01G582800 chr2D 89.388 2026 86 69 1011 2972 627855715 627853755 0.000000e+00 2431.0
3 TraesCS2B01G582800 chr2D 94.545 330 15 1 1452 1781 431383129 431383455 9.520000e-140 507.0
4 TraesCS2B01G582800 chr2D 87.010 408 33 9 6 405 627856607 627856212 2.720000e-120 442.0
5 TraesCS2B01G582800 chr2D 98.333 60 1 0 921 980 627856096 627856037 4.060000e-19 106.0
6 TraesCS2B01G582800 chr2A 92.319 1419 50 22 921 2303 758312560 758311165 0.000000e+00 1962.0
7 TraesCS2B01G582800 chr2A 83.474 593 47 23 2417 2972 758310974 758310396 3.430000e-139 505.0
8 TraesCS2B01G582800 chr2A 81.928 332 18 14 101 397 758313004 758312680 2.970000e-60 243.0
9 TraesCS2B01G582800 chr1D 87.330 442 31 15 1178 1600 2161607 2161172 1.610000e-132 483.0
10 TraesCS2B01G582800 chr6D 86.830 448 35 14 1172 1600 101240020 101239578 2.080000e-131 479.0
11 TraesCS2B01G582800 chr6D 86.607 448 36 14 1172 1600 408918090 408917648 9.660000e-130 473.0
12 TraesCS2B01G582800 chr5D 86.364 440 34 13 1181 1600 306575424 306574991 9.730000e-125 457.0
13 TraesCS2B01G582800 chr7D 85.523 449 39 13 1172 1600 634078345 634078787 2.110000e-121 446.0
14 TraesCS2B01G582800 chr3D 84.773 440 41 16 1181 1600 395069204 395068771 4.590000e-113 418.0
15 TraesCS2B01G582800 chr3D 91.667 48 4 0 1940 1987 141355725 141355772 1.920000e-07 67.6
16 TraesCS2B01G582800 chr3D 97.297 37 1 0 1951 1987 560963297 560963261 2.480000e-06 63.9
17 TraesCS2B01G582800 chr4D 97.297 37 1 0 1951 1987 418853415 418853451 2.480000e-06 63.9
18 TraesCS2B01G582800 chr3B 100.000 30 0 0 2687 2716 187806177 187806148 4.150000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G582800 chr2B 770184652 770187629 2977 True 2279.500000 3801 100.000 1 2978 2 chr2B.!!$R1 2977
1 TraesCS2B01G582800 chr2D 627853755 627856607 2852 True 993.000000 2431 91.577 6 2972 3 chr2D.!!$R1 2966
2 TraesCS2B01G582800 chr2A 758310396 758313004 2608 True 903.333333 1962 85.907 101 2972 3 chr2A.!!$R1 2871

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
288 310 0.036875 AAAAGGGGCGGAAGAGAGTG 59.963 55.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2143 2524 0.329261 TGGCCTCCATCCTTGACTTG 59.671 55.0 3.32 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.340034 CAAATGCAATGCTCCAATGGTT 58.660 40.909 6.82 0.00 0.00 3.67
40 41 1.452110 CTCCAATGGTTGCGACATGA 58.548 50.000 6.39 0.00 0.00 3.07
42 43 0.452987 CCAATGGTTGCGACATGAGG 59.547 55.000 6.39 0.00 0.00 3.86
69 70 4.651867 CGGAGGAGGGTAAGTCGA 57.348 61.111 0.00 0.00 0.00 4.20
70 71 2.406205 CGGAGGAGGGTAAGTCGAG 58.594 63.158 0.00 0.00 0.00 4.04
99 100 1.153549 CGACCTCTAGGGCTGCAAC 60.154 63.158 0.50 0.00 42.58 4.17
116 117 1.885887 CAACAGGGTTGGTACATGGTG 59.114 52.381 0.00 0.00 39.30 4.17
219 220 2.679349 GCACATTTCCCTCTCCTGAGAC 60.679 54.545 0.00 0.00 42.73 3.36
223 224 0.699399 TTCCCTCTCCTGAGACGACT 59.301 55.000 0.00 0.00 42.73 4.18
224 225 0.699399 TCCCTCTCCTGAGACGACTT 59.301 55.000 0.00 0.00 42.73 3.01
227 228 2.374184 CCTCTCCTGAGACGACTTGAT 58.626 52.381 0.00 0.00 42.73 2.57
228 229 2.757868 CCTCTCCTGAGACGACTTGATT 59.242 50.000 0.00 0.00 42.73 2.57
234 235 5.955488 TCCTGAGACGACTTGATTAAAGAG 58.045 41.667 0.00 0.00 39.38 2.85
244 245 7.931948 ACGACTTGATTAAAGAGAAGAAAAGGA 59.068 33.333 0.00 0.00 39.38 3.36
278 279 1.178534 TGAAGGAGCAAAAAGGGGCG 61.179 55.000 0.00 0.00 34.54 6.13
285 307 0.893727 GCAAAAAGGGGCGGAAGAGA 60.894 55.000 0.00 0.00 0.00 3.10
286 308 1.168714 CAAAAAGGGGCGGAAGAGAG 58.831 55.000 0.00 0.00 0.00 3.20
287 309 0.771755 AAAAAGGGGCGGAAGAGAGT 59.228 50.000 0.00 0.00 0.00 3.24
288 310 0.036875 AAAAGGGGCGGAAGAGAGTG 59.963 55.000 0.00 0.00 0.00 3.51
298 320 1.343465 GGAAGAGAGTGGTGTTTCCGA 59.657 52.381 0.00 0.00 39.52 4.55
347 377 1.541889 GCGGCCTCATCATCATCTTCA 60.542 52.381 0.00 0.00 0.00 3.02
350 390 2.224137 GGCCTCATCATCATCTTCACGA 60.224 50.000 0.00 0.00 0.00 4.35
983 1028 4.562425 ACAGCCCACACACCACCG 62.562 66.667 0.00 0.00 0.00 4.94
989 1034 4.866224 CACACACCACCGCCACCA 62.866 66.667 0.00 0.00 0.00 4.17
990 1035 4.562425 ACACACCACCGCCACCAG 62.562 66.667 0.00 0.00 0.00 4.00
1627 1984 3.660111 GCAGCACCAACCGTGACC 61.660 66.667 0.00 0.00 46.20 4.02
1645 2002 2.531685 CCACCTTCCCCCAGGTCA 60.532 66.667 0.00 0.00 44.63 4.02
1988 2357 2.126189 GAAGTAGCCGTTCGCCGT 60.126 61.111 0.00 0.00 38.78 5.68
2007 2381 2.789092 CGTTCACCGCCGTTACTAGTAG 60.789 54.545 2.23 0.00 0.00 2.57
2010 2384 2.936498 TCACCGCCGTTACTAGTAGTAC 59.064 50.000 9.62 4.99 28.93 2.73
2078 2459 1.615883 CAGAGTCAGGTGCAGTACAGT 59.384 52.381 0.00 0.00 0.00 3.55
2081 2462 2.557056 GAGTCAGGTGCAGTACAGTACA 59.443 50.000 13.37 0.00 0.00 2.90
2082 2463 2.558795 AGTCAGGTGCAGTACAGTACAG 59.441 50.000 13.37 6.12 0.00 2.74
2083 2464 1.893137 TCAGGTGCAGTACAGTACAGG 59.107 52.381 13.37 5.84 0.00 4.00
2084 2465 1.893137 CAGGTGCAGTACAGTACAGGA 59.107 52.381 13.37 3.25 0.00 3.86
2085 2466 1.893801 AGGTGCAGTACAGTACAGGAC 59.106 52.381 16.56 16.56 36.15 3.85
2086 2467 1.893801 GGTGCAGTACAGTACAGGACT 59.106 52.381 21.76 0.00 36.88 3.85
2087 2468 3.087031 GGTGCAGTACAGTACAGGACTA 58.913 50.000 21.76 0.00 36.88 2.59
2088 2469 3.119566 GGTGCAGTACAGTACAGGACTAC 60.120 52.174 21.76 0.00 36.88 2.73
2089 2470 3.504906 GTGCAGTACAGTACAGGACTACA 59.495 47.826 17.29 0.82 35.64 2.74
2112 2493 7.154656 ACATACATACATACAGCCATACAGTG 58.845 38.462 0.00 0.00 0.00 3.66
2113 2494 5.869649 ACATACATACAGCCATACAGTGA 57.130 39.130 0.00 0.00 0.00 3.41
2126 2507 1.078848 CAGTGAGGGTACTGCTGCC 60.079 63.158 0.00 0.00 41.31 4.85
2129 2510 2.124942 GAGGGTACTGCTGCCTGC 60.125 66.667 0.00 0.00 43.25 4.85
2133 2514 2.357517 GTACTGCTGCCTGCGTGT 60.358 61.111 0.00 0.73 46.63 4.49
2136 2517 4.021631 CTGCTGCCTGCGTGTGTG 62.022 66.667 0.00 0.00 46.63 3.82
2143 2524 4.046998 CTGCGTGTGTGCGTCGTC 62.047 66.667 0.00 0.00 37.81 4.20
2144 2525 4.856607 TGCGTGTGTGCGTCGTCA 62.857 61.111 0.00 0.00 37.81 4.35
2145 2526 3.622362 GCGTGTGTGCGTCGTCAA 61.622 61.111 0.00 0.00 0.00 3.18
2217 2598 4.408276 TGGAAATGTGGAATCCGGTTAAA 58.592 39.130 0.00 0.00 35.96 1.52
2262 2643 3.629438 AAATTGCTGCAAAATGTTGGC 57.371 38.095 20.06 0.00 35.10 4.52
2270 2651 1.537990 GCAAAATGTTGGCCTCGTGTT 60.538 47.619 3.32 0.00 35.10 3.32
2271 2652 2.820330 CAAAATGTTGGCCTCGTGTTT 58.180 42.857 3.32 0.00 0.00 2.83
2272 2653 3.194062 CAAAATGTTGGCCTCGTGTTTT 58.806 40.909 3.32 2.57 0.00 2.43
2284 2665 3.491267 CCTCGTGTTTTTCTCTCTGTGAC 59.509 47.826 0.00 0.00 0.00 3.67
2300 2681 1.127582 GTGACTTCTGATGCTTGCGTC 59.872 52.381 7.79 7.79 0.00 5.19
2358 2803 5.302059 CCTCTCTGATCAAATGCAATGGATT 59.698 40.000 0.00 0.00 0.00 3.01
2410 2855 4.363990 CGCACGGGCAGTCAGTCT 62.364 66.667 11.77 0.00 41.24 3.24
2412 2857 2.262915 CACGGGCAGTCAGTCTCC 59.737 66.667 0.00 0.00 0.00 3.71
2413 2858 2.203640 ACGGGCAGTCAGTCTCCA 60.204 61.111 0.00 0.00 0.00 3.86
2594 3104 0.032678 GGCGAGGATGTCACGATGAT 59.967 55.000 0.00 0.00 0.00 2.45
2597 3107 1.603931 CGAGGATGTCACGATGATGGG 60.604 57.143 0.00 0.00 0.00 4.00
2672 3182 1.675552 AACTCTCCCAACAACAACCG 58.324 50.000 0.00 0.00 0.00 4.44
2700 3210 2.971428 AAGTACCGATGCCGATGCCG 62.971 60.000 0.00 0.00 38.22 5.69
2701 3211 3.220658 TACCGATGCCGATGCCGA 61.221 61.111 0.00 0.00 38.22 5.54
2702 3212 2.570284 TACCGATGCCGATGCCGAT 61.570 57.895 0.00 0.00 38.22 4.18
2703 3213 2.763627 TACCGATGCCGATGCCGATG 62.764 60.000 0.00 0.00 38.22 3.84
2705 3215 3.730761 GATGCCGATGCCGATGCC 61.731 66.667 0.00 0.00 38.22 4.40
2709 3219 3.417224 CCGATGCCGATGCCGATG 61.417 66.667 0.00 0.00 38.22 3.84
2712 3222 4.567488 ATGCCGATGCCGATGCCA 62.567 61.111 0.00 0.00 38.22 4.92
2713 3223 3.855503 ATGCCGATGCCGATGCCAT 62.856 57.895 0.00 0.00 38.22 4.40
2714 3224 4.034258 GCCGATGCCGATGCCATG 62.034 66.667 0.00 0.00 38.22 3.66
2715 3225 2.592574 CCGATGCCGATGCCATGT 60.593 61.111 0.00 0.00 38.22 3.21
2717 3227 2.610694 CGATGCCGATGCCATGTCC 61.611 63.158 0.00 0.00 38.22 4.02
2930 3456 3.480133 GACGCCATGCCTACCCCT 61.480 66.667 0.00 0.00 0.00 4.79
2931 3457 3.462199 GACGCCATGCCTACCCCTC 62.462 68.421 0.00 0.00 0.00 4.30
2932 3458 4.609018 CGCCATGCCTACCCCTCG 62.609 72.222 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.283613 ATTGCATTTGCGCGTGGTTG 61.284 50.000 8.43 2.24 45.83 3.77
1 2 1.006337 ATTGCATTTGCGCGTGGTT 60.006 47.368 8.43 0.00 45.83 3.67
2 3 1.733758 CATTGCATTTGCGCGTGGT 60.734 52.632 8.43 0.00 45.83 4.16
3 4 3.073874 GCATTGCATTTGCGCGTGG 62.074 57.895 8.43 0.00 45.83 4.94
4 5 2.005178 GAGCATTGCATTTGCGCGTG 62.005 55.000 11.91 2.52 44.82 5.34
8 9 1.326245 CATTGGAGCATTGCATTTGCG 59.674 47.619 11.91 0.00 44.82 4.85
13 14 1.406341 GCAACCATTGGAGCATTGCAT 60.406 47.619 18.75 0.00 44.01 3.96
46 47 1.075748 TTACCCTCCTCCGGCTACC 60.076 63.158 0.00 0.00 0.00 3.18
47 48 0.396835 ACTTACCCTCCTCCGGCTAC 60.397 60.000 0.00 0.00 0.00 3.58
50 51 2.783288 CGACTTACCCTCCTCCGGC 61.783 68.421 0.00 0.00 0.00 6.13
51 52 1.077212 TCGACTTACCCTCCTCCGG 60.077 63.158 0.00 0.00 0.00 5.14
55 56 1.219824 TCCCCTCGACTTACCCTCCT 61.220 60.000 0.00 0.00 0.00 3.69
56 57 0.756070 CTCCCCTCGACTTACCCTCC 60.756 65.000 0.00 0.00 0.00 4.30
80 81 3.019003 TTGCAGCCCTAGAGGTCGC 62.019 63.158 0.00 0.00 38.26 5.19
84 85 1.222936 CCTGTTGCAGCCCTAGAGG 59.777 63.158 0.00 0.00 39.47 3.69
93 94 1.541147 CATGTACCAACCCTGTTGCAG 59.459 52.381 1.46 0.00 0.00 4.41
99 100 0.965363 GCCACCATGTACCAACCCTG 60.965 60.000 0.00 0.00 0.00 4.45
116 117 3.490759 CGATGGTGTGAGCGTGCC 61.491 66.667 0.00 0.00 0.00 5.01
207 208 1.827681 TCAAGTCGTCTCAGGAGAGG 58.172 55.000 11.70 11.70 42.34 3.69
211 212 5.710567 TCTCTTTAATCAAGTCGTCTCAGGA 59.289 40.000 0.00 0.00 33.66 3.86
219 220 8.311650 TCCTTTTCTTCTCTTTAATCAAGTCG 57.688 34.615 0.00 0.00 33.66 4.18
278 279 1.343465 TCGGAAACACCACTCTCTTCC 59.657 52.381 0.00 0.00 38.90 3.46
285 307 0.734942 CGCGTATCGGAAACACCACT 60.735 55.000 0.00 0.00 38.90 4.00
286 308 1.010419 ACGCGTATCGGAAACACCAC 61.010 55.000 11.67 0.00 43.86 4.16
287 309 0.733566 GACGCGTATCGGAAACACCA 60.734 55.000 13.97 0.00 43.86 4.17
288 310 0.457337 AGACGCGTATCGGAAACACC 60.457 55.000 13.97 0.00 43.86 4.16
330 352 3.103447 TCGTGAAGATGATGATGAGGC 57.897 47.619 0.00 0.00 0.00 4.70
347 377 2.624264 GCAACAACGCGTCTTCGT 59.376 55.556 14.44 4.82 45.58 3.85
350 390 3.645975 CCGGCAACAACGCGTCTT 61.646 61.111 14.44 3.89 0.00 3.01
989 1034 1.079543 AGAAACATCTGCGCTCGCT 60.080 52.632 9.73 0.00 42.51 4.93
990 1035 1.346538 GAGAAACATCTGCGCTCGC 59.653 57.895 9.73 7.38 42.35 5.03
991 1036 0.368227 GTGAGAAACATCTGCGCTCG 59.632 55.000 9.73 0.00 0.00 5.03
992 1037 0.723981 GGTGAGAAACATCTGCGCTC 59.276 55.000 9.73 0.00 0.00 5.03
1988 2357 2.436417 ACTACTAGTAACGGCGGTGAA 58.564 47.619 8.19 0.00 0.00 3.18
2007 2381 6.020372 CGAACACTGTACTTACTGCTAGTAC 58.980 44.000 11.05 11.05 45.19 2.73
2010 2384 4.852104 CACGAACACTGTACTTACTGCTAG 59.148 45.833 0.00 0.00 0.00 3.42
2028 2402 3.581755 GCTGTATACACTTGGACACGAA 58.418 45.455 0.08 0.00 0.00 3.85
2078 2459 7.176165 GGCTGTATGTATGTATGTAGTCCTGTA 59.824 40.741 0.00 0.00 0.00 2.74
2081 2462 6.075315 TGGCTGTATGTATGTATGTAGTCCT 58.925 40.000 0.00 0.00 0.00 3.85
2082 2463 6.340962 TGGCTGTATGTATGTATGTAGTCC 57.659 41.667 0.00 0.00 0.00 3.85
2083 2464 8.520351 TGTATGGCTGTATGTATGTATGTAGTC 58.480 37.037 0.00 0.00 0.00 2.59
2084 2465 8.417273 TGTATGGCTGTATGTATGTATGTAGT 57.583 34.615 0.00 0.00 0.00 2.73
2085 2466 8.523658 ACTGTATGGCTGTATGTATGTATGTAG 58.476 37.037 0.00 0.00 0.00 2.74
2086 2467 8.303876 CACTGTATGGCTGTATGTATGTATGTA 58.696 37.037 0.00 0.00 0.00 2.29
2087 2468 7.015195 TCACTGTATGGCTGTATGTATGTATGT 59.985 37.037 0.00 0.00 0.00 2.29
2088 2469 7.378181 TCACTGTATGGCTGTATGTATGTATG 58.622 38.462 0.00 0.00 0.00 2.39
2089 2470 7.310052 CCTCACTGTATGGCTGTATGTATGTAT 60.310 40.741 0.00 0.00 0.00 2.29
2112 2493 2.124942 GCAGGCAGCAGTACCCTC 60.125 66.667 0.00 0.00 44.79 4.30
2113 2494 4.087892 CGCAGGCAGCAGTACCCT 62.088 66.667 1.96 0.00 46.13 4.34
2126 2507 4.046998 GACGACGCACACACGCAG 62.047 66.667 0.00 0.00 36.19 5.18
2129 2510 2.130554 GACTTGACGACGCACACACG 62.131 60.000 0.00 0.00 39.50 4.49
2133 2514 0.874175 CCTTGACTTGACGACGCACA 60.874 55.000 0.00 0.00 0.00 4.57
2136 2517 0.716108 CATCCTTGACTTGACGACGC 59.284 55.000 0.00 0.00 0.00 5.19
2137 2518 1.067846 TCCATCCTTGACTTGACGACG 60.068 52.381 0.00 0.00 0.00 5.12
2138 2519 2.611518 CTCCATCCTTGACTTGACGAC 58.388 52.381 0.00 0.00 0.00 4.34
2139 2520 1.550524 CCTCCATCCTTGACTTGACGA 59.449 52.381 0.00 0.00 0.00 4.20
2140 2521 2.009042 GCCTCCATCCTTGACTTGACG 61.009 57.143 0.00 0.00 0.00 4.35
2141 2522 1.680249 GGCCTCCATCCTTGACTTGAC 60.680 57.143 0.00 0.00 0.00 3.18
2142 2523 0.620556 GGCCTCCATCCTTGACTTGA 59.379 55.000 0.00 0.00 0.00 3.02
2143 2524 0.329261 TGGCCTCCATCCTTGACTTG 59.671 55.000 3.32 0.00 0.00 3.16
2144 2525 0.329596 GTGGCCTCCATCCTTGACTT 59.670 55.000 3.32 0.00 35.28 3.01
2145 2526 0.842030 TGTGGCCTCCATCCTTGACT 60.842 55.000 3.32 0.00 35.28 3.41
2217 2598 4.214758 CCGACGGTTTTCTTTCCATTTACT 59.785 41.667 5.48 0.00 0.00 2.24
2262 2643 3.491267 GTCACAGAGAGAAAAACACGAGG 59.509 47.826 0.00 0.00 0.00 4.63
2270 2651 4.993584 GCATCAGAAGTCACAGAGAGAAAA 59.006 41.667 0.00 0.00 0.00 2.29
2271 2652 4.282957 AGCATCAGAAGTCACAGAGAGAAA 59.717 41.667 0.00 0.00 0.00 2.52
2272 2653 3.831333 AGCATCAGAAGTCACAGAGAGAA 59.169 43.478 0.00 0.00 0.00 2.87
2284 2665 1.736126 ACATGACGCAAGCATCAGAAG 59.264 47.619 0.00 0.00 45.62 2.85
2362 2807 2.938823 GCGCGGCCACATACGTATG 61.939 63.158 29.48 29.48 39.55 2.39
2363 2808 2.660552 GCGCGGCCACATACGTAT 60.661 61.111 8.83 1.14 0.00 3.06
2535 3018 1.658994 TTTCAACGTGCGGTTCTCTT 58.341 45.000 0.00 0.00 36.49 2.85
2536 3019 1.531149 CATTTCAACGTGCGGTTCTCT 59.469 47.619 0.00 0.00 36.49 3.10
2538 3021 1.263217 GACATTTCAACGTGCGGTTCT 59.737 47.619 0.00 0.00 36.49 3.01
2546 3041 1.574428 GCCGCTGACATTTCAACGT 59.426 52.632 4.18 0.00 39.28 3.99
2578 3073 1.270518 CCCCATCATCGTGACATCCTC 60.271 57.143 0.00 0.00 0.00 3.71
2579 3074 0.761187 CCCCATCATCGTGACATCCT 59.239 55.000 0.00 0.00 0.00 3.24
2580 3075 0.758734 TCCCCATCATCGTGACATCC 59.241 55.000 0.00 0.00 0.00 3.51
2581 3076 2.420642 CATCCCCATCATCGTGACATC 58.579 52.381 0.00 0.00 0.00 3.06
2700 3210 2.263741 GGGACATGGCATCGGCATC 61.264 63.158 0.00 0.00 45.69 3.91
2702 3212 4.504596 GGGGACATGGCATCGGCA 62.505 66.667 0.00 0.00 43.71 5.69
2703 3213 4.195334 AGGGGACATGGCATCGGC 62.195 66.667 0.00 0.00 40.13 5.54
2705 3215 2.903855 GCAGGGGACATGGCATCG 60.904 66.667 0.00 0.00 0.00 3.84
2706 3216 2.903855 CGCAGGGGACATGGCATC 60.904 66.667 0.00 0.00 0.00 3.91
2930 3456 1.446099 CAAGCCAAGTAGCGAGCGA 60.446 57.895 0.00 0.00 38.01 4.93
2931 3457 3.084579 CAAGCCAAGTAGCGAGCG 58.915 61.111 0.00 0.00 38.01 5.03
2932 3458 2.754995 GGCAAGCCAAGTAGCGAGC 61.755 63.158 6.14 0.00 38.01 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.