Multiple sequence alignment - TraesCS2B01G582600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G582600 chr2B 100.000 4343 0 0 1 4343 770062682 770067024 0.000000e+00 8021.0
1 TraesCS2B01G582600 chr2B 95.710 303 12 1 1 303 669240684 669240383 1.820000e-133 486.0
2 TraesCS2B01G582600 chr2B 89.344 366 26 2 297 649 768649090 768649455 8.570000e-122 448.0
3 TraesCS2B01G582600 chr2B 89.071 366 27 2 297 649 669239413 669239048 3.990000e-120 442.0
4 TraesCS2B01G582600 chr2B 86.000 100 13 1 726 825 479013959 479014057 5.940000e-19 106.0
5 TraesCS2B01G582600 chr2A 94.298 3525 171 16 726 4232 758275054 758278566 0.000000e+00 5369.0
6 TraesCS2B01G582600 chr2D 95.578 3347 127 14 652 3979 627815531 627818875 0.000000e+00 5341.0
7 TraesCS2B01G582600 chr2D 96.700 303 8 2 1 303 546410551 546410851 1.800000e-138 503.0
8 TraesCS2B01G582600 chr2D 94.904 314 16 0 297 610 546411821 546412134 3.900000e-135 492.0
9 TraesCS2B01G582600 chr2D 90.137 365 15 2 297 649 618157036 618156681 5.120000e-124 455.0
10 TraesCS2B01G582600 chr2D 81.748 389 32 19 3976 4343 627819024 627819394 5.500000e-74 289.0
11 TraesCS2B01G582600 chr7B 96.700 303 9 1 1 303 721205885 721206186 1.800000e-138 503.0
12 TraesCS2B01G582600 chr1B 96.370 303 10 1 1 303 651901438 651901739 8.390000e-137 497.0
13 TraesCS2B01G582600 chr1B 89.589 365 25 2 297 648 651902708 651903072 6.620000e-123 451.0
14 TraesCS2B01G582600 chr1B 85.437 103 15 0 723 825 507851748 507851850 1.650000e-19 108.0
15 TraesCS2B01G582600 chr3A 96.053 304 10 2 1 303 127189210 127189512 1.090000e-135 494.0
16 TraesCS2B01G582600 chr3A 94.904 314 16 0 297 610 703807223 703806910 3.900000e-135 492.0
17 TraesCS2B01G582600 chr3A 95.710 303 12 1 1 303 100865295 100864994 1.820000e-133 486.0
18 TraesCS2B01G582600 chr3A 91.209 364 20 1 297 648 100864024 100863661 6.530000e-133 484.0
19 TraesCS2B01G582600 chr3A 90.164 366 24 4 297 650 127190483 127190848 2.370000e-127 466.0
20 TraesCS2B01G582600 chr6B 96.040 303 11 1 1 303 544077853 544078154 3.900000e-135 492.0
21 TraesCS2B01G582600 chr6B 81.560 141 19 1 723 863 537553841 537553974 4.590000e-20 110.0
22 TraesCS2B01G582600 chr4D 96.040 303 11 1 1 303 483620783 483620482 3.900000e-135 492.0
23 TraesCS2B01G582600 chr4D 93.651 315 19 1 297 610 483619514 483619200 1.830000e-128 470.0
24 TraesCS2B01G582600 chr4A 95.710 303 12 1 1 303 687426654 687426955 1.820000e-133 486.0
25 TraesCS2B01G582600 chr4A 81.560 141 19 1 723 863 109850207 109850074 4.590000e-20 110.0
26 TraesCS2B01G582600 chr5D 94.322 317 15 2 297 610 377489409 377489725 2.350000e-132 483.0
27 TraesCS2B01G582600 chr3B 93.949 314 19 0 297 610 783892217 783892530 3.930000e-130 475.0
28 TraesCS2B01G582600 chr3B 90.801 337 26 4 313 649 673107192 673106861 3.080000e-121 446.0
29 TraesCS2B01G582600 chr1A 93.312 314 19 1 297 610 556781920 556782231 3.060000e-126 462.0
30 TraesCS2B01G582600 chr1A 85.437 103 15 0 723 825 479836087 479836189 1.650000e-19 108.0
31 TraesCS2B01G582600 chr4B 87.302 315 38 2 297 610 595717720 595718033 4.130000e-95 359.0
32 TraesCS2B01G582600 chr5B 80.533 488 68 11 3383 3856 586711801 586712275 2.490000e-92 350.0
33 TraesCS2B01G582600 chrUn 86.792 106 12 2 721 825 81694078 81694182 2.740000e-22 117.0
34 TraesCS2B01G582600 chr1D 88.542 96 11 0 730 825 246649988 246650083 2.740000e-22 117.0
35 TraesCS2B01G582600 chr6D 100.000 37 0 0 612 648 2887136 2887100 7.790000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G582600 chr2B 770062682 770067024 4342 False 8021.0 8021 100.0000 1 4343 1 chr2B.!!$F3 4342
1 TraesCS2B01G582600 chr2B 669239048 669240684 1636 True 464.0 486 92.3905 1 649 2 chr2B.!!$R1 648
2 TraesCS2B01G582600 chr2A 758275054 758278566 3512 False 5369.0 5369 94.2980 726 4232 1 chr2A.!!$F1 3506
3 TraesCS2B01G582600 chr2D 627815531 627819394 3863 False 2815.0 5341 88.6630 652 4343 2 chr2D.!!$F2 3691
4 TraesCS2B01G582600 chr2D 546410551 546412134 1583 False 497.5 503 95.8020 1 610 2 chr2D.!!$F1 609
5 TraesCS2B01G582600 chr1B 651901438 651903072 1634 False 474.0 497 92.9795 1 648 2 chr1B.!!$F2 647
6 TraesCS2B01G582600 chr3A 100863661 100865295 1634 True 485.0 486 93.4595 1 648 2 chr3A.!!$R2 647
7 TraesCS2B01G582600 chr3A 127189210 127190848 1638 False 480.0 494 93.1085 1 650 2 chr3A.!!$F1 649
8 TraesCS2B01G582600 chr4D 483619200 483620783 1583 True 481.0 492 94.8455 1 610 2 chr4D.!!$R1 609

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
561 1540 0.036732 GCTGGAACATCCTGGTGTGA 59.963 55.000 8.44 0.0 38.20 3.58 F
2139 3149 0.183492 TGGAGAAAGCCTGCACTGTT 59.817 50.000 0.00 0.0 38.37 3.16 F
2301 3311 1.740025 GTGAATGTACTTCCAGCCTGC 59.260 52.381 0.00 0.0 32.49 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2193 3203 1.614903 TCAGCTCCATTTTGCACAAGG 59.385 47.619 0.0 0.0 0.0 3.61 R
3210 4220 0.179073 CATTCCACCTACCAGCCTCG 60.179 60.000 0.0 0.0 0.0 4.63 R
4285 5487 0.250727 TGGCAGCAAAGTCCCTACAC 60.251 55.000 0.0 0.0 0.0 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.601443 GAGAAGAAAGCAGCTACCTGA 57.399 47.619 0.00 0.00 41.77 3.86
52 53 2.023984 TGCTTCCTATGGGAGAGAGACA 60.024 50.000 0.00 0.00 43.29 3.41
58 59 3.005261 CCTATGGGAGAGAGACACATTCG 59.995 52.174 0.00 0.00 33.58 3.34
86 87 2.037251 GACTTGCTTGAGTAGTGTCCCA 59.963 50.000 0.00 0.00 0.00 4.37
328 1307 2.187239 ATCTTCAGAGGAGGGCATGA 57.813 50.000 0.00 0.00 0.00 3.07
426 1405 9.941325 TGTTAATTTGGTTATCGTCCTTTAGTA 57.059 29.630 0.00 0.00 0.00 1.82
448 1427 7.727181 AGTATGTTGATACCTTTGTAGCTAGG 58.273 38.462 0.00 0.00 35.88 3.02
469 1448 2.704065 GGTAGCACTAGGCCCTTTCATA 59.296 50.000 0.00 0.00 46.50 2.15
471 1450 1.771255 AGCACTAGGCCCTTTCATAGG 59.229 52.381 0.00 0.00 46.50 2.57
482 1461 5.201243 GCCCTTTCATAGGTAGTTTTGGAT 58.799 41.667 0.00 0.00 43.07 3.41
515 1494 8.788238 AGCATCCTGATGTGGTGATATATATA 57.212 34.615 8.79 0.00 40.80 0.86
541 1520 5.822519 GTGGTGTGATGATTAGGCTTGATAA 59.177 40.000 0.00 0.00 0.00 1.75
561 1540 0.036732 GCTGGAACATCCTGGTGTGA 59.963 55.000 8.44 0.00 38.20 3.58
817 1811 6.757897 TTGTTTGTTCACTCATTTCAGTCT 57.242 33.333 0.00 0.00 0.00 3.24
870 1864 9.836179 ATATTGAAGACATCTTATACTCCCTCT 57.164 33.333 0.00 0.00 36.11 3.69
875 1869 7.102518 AGACATCTTATACTCCCTCTGATCT 57.897 40.000 0.00 0.00 0.00 2.75
926 1935 3.836562 GGGAGTACTTTGGTAGACTTGGA 59.163 47.826 0.00 0.00 0.00 3.53
927 1936 4.470304 GGGAGTACTTTGGTAGACTTGGAT 59.530 45.833 0.00 0.00 0.00 3.41
944 1953 9.807649 AGACTTGGATATAAATCACAAAAATGC 57.192 29.630 0.00 0.00 33.41 3.56
968 1977 6.260936 GCTCCATTTCTTATTTGAATCTCCGA 59.739 38.462 0.00 0.00 0.00 4.55
1491 2501 3.112709 GGCAACACGCTCGTCTCC 61.113 66.667 0.00 0.00 41.91 3.71
1581 2591 0.997363 TCTCCTGGAACTCCCTCGTA 59.003 55.000 0.00 0.00 35.38 3.43
1621 2631 1.539065 GGATGTTCGATGATGCGAGGT 60.539 52.381 0.00 0.00 41.79 3.85
1731 2741 1.908299 GGGGTTTGGGTTGGCTCTG 60.908 63.158 0.00 0.00 0.00 3.35
1740 2750 1.310933 GGTTGGCTCTGCATGGACTG 61.311 60.000 0.00 0.00 0.00 3.51
1749 2759 2.758089 GCATGGACTGGCGCTGAAG 61.758 63.158 7.64 5.49 0.00 3.02
1750 2760 1.078918 CATGGACTGGCGCTGAAGA 60.079 57.895 7.64 0.00 0.00 2.87
1776 2786 0.532573 TGGACTCCGTGCTCAATCTC 59.467 55.000 0.00 0.00 0.00 2.75
1984 2994 6.226787 CCAGGGTCTATCACATTATCAAGTC 58.773 44.000 0.00 0.00 0.00 3.01
2039 3049 1.692749 TGGGGAGGGAGGTACATGC 60.693 63.158 0.00 0.00 0.00 4.06
2139 3149 0.183492 TGGAGAAAGCCTGCACTGTT 59.817 50.000 0.00 0.00 38.37 3.16
2193 3203 3.969117 TGGAATGCAATGATCGCTAAC 57.031 42.857 0.00 0.00 0.00 2.34
2298 3308 2.359900 CTGGTGAATGTACTTCCAGCC 58.640 52.381 0.00 0.41 39.02 4.85
2301 3311 1.740025 GTGAATGTACTTCCAGCCTGC 59.260 52.381 0.00 0.00 32.49 4.85
2516 3526 4.751767 ATTCTCAGAGTCCATGGAGTTC 57.248 45.455 23.14 18.81 0.00 3.01
2650 3660 8.028652 AGGGAAAGAAATTCATGGTGTTTTAA 57.971 30.769 0.00 0.00 39.98 1.52
2685 3695 3.584733 AGTAATCATCCCTTTCTGGCC 57.415 47.619 0.00 0.00 0.00 5.36
2727 3737 7.573710 TGTATACTAAAGGTGGAATGCTTGAT 58.426 34.615 4.17 0.00 0.00 2.57
2935 3945 3.132111 TGGGCTTGTTGAGAAAGGAAAAC 59.868 43.478 0.00 0.00 0.00 2.43
3050 4060 7.009179 TGACTGAATCTGTTGAACTAATCCT 57.991 36.000 0.00 0.00 0.00 3.24
3063 4073 6.349300 TGAACTAATCCTAGACATGCCTTTC 58.651 40.000 0.00 0.00 0.00 2.62
3120 4130 2.362077 GGCTTGCCGAATACATGGAAAT 59.638 45.455 0.00 0.00 0.00 2.17
3207 4217 7.331026 ACTACACACTGCTGATAAACATGTAT 58.669 34.615 0.00 0.00 0.00 2.29
3210 4220 4.336433 ACACTGCTGATAAACATGTATGCC 59.664 41.667 0.00 0.00 0.00 4.40
3273 4283 8.893563 AATTAATGAAATCCAGGAAGGTACAA 57.106 30.769 0.00 0.00 39.02 2.41
3472 4484 6.587206 TGCATGTTCACCAAATCTGATAAA 57.413 33.333 0.00 0.00 0.00 1.40
3476 4488 9.403110 GCATGTTCACCAAATCTGATAAATATC 57.597 33.333 0.00 0.00 0.00 1.63
3521 4533 2.606725 CGATGAGGAGTGCAATGACTTC 59.393 50.000 0.00 0.00 0.00 3.01
3545 4557 1.354506 GACCGTAGTCGTCGATGGG 59.645 63.158 4.48 0.00 32.18 4.00
3606 4618 4.911610 GCAATATTAATTGGCACTACTGCG 59.088 41.667 0.00 0.00 45.31 5.18
3734 4748 1.267806 GTCCAGCTGTTTGTGTCCATG 59.732 52.381 13.81 0.00 0.00 3.66
3792 4806 1.142262 ACGTACCTTTTGCCAGTTCCT 59.858 47.619 0.00 0.00 0.00 3.36
3817 4831 8.262715 TCAACTTTGAATAGTAAATGCGATGA 57.737 30.769 0.00 0.00 33.55 2.92
3926 4941 3.173151 TGTGCTAATCCTCAACTCTGGA 58.827 45.455 0.00 0.00 36.72 3.86
3971 4986 9.110502 GAAAGTAGATTTGGGGAACTTACTATG 57.889 37.037 0.00 0.00 0.00 2.23
3977 4992 9.462606 AGATTTGGGGAACTTACTATGTTAAAG 57.537 33.333 0.00 0.00 0.00 1.85
3978 4993 7.457024 TTTGGGGAACTTACTATGTTAAAGC 57.543 36.000 0.00 0.00 0.00 3.51
4173 5341 7.926674 TCTCAATTGCTCATCAGATTGTTTA 57.073 32.000 0.00 0.00 32.70 2.01
4180 5348 5.183522 TGCTCATCAGATTGTTTATTGTGCA 59.816 36.000 0.00 0.00 31.94 4.57
4202 5370 1.198637 GTGACTGAAGCATCAACTGGC 59.801 52.381 0.00 0.00 34.49 4.85
4203 5371 1.072806 TGACTGAAGCATCAACTGGCT 59.927 47.619 0.00 0.00 43.46 4.75
4211 5379 4.405116 AGCATCAACTGGCTTTTCAAAA 57.595 36.364 0.00 0.00 36.92 2.44
4276 5478 8.873186 ATATGCATTGAATATGAGATGTTGGA 57.127 30.769 3.54 0.00 0.00 3.53
4277 5479 7.776618 ATGCATTGAATATGAGATGTTGGAT 57.223 32.000 0.00 0.00 0.00 3.41
4278 5480 6.977213 TGCATTGAATATGAGATGTTGGATG 58.023 36.000 0.00 0.00 0.00 3.51
4279 5481 6.015772 TGCATTGAATATGAGATGTTGGATGG 60.016 38.462 0.00 0.00 0.00 3.51
4280 5482 6.571731 GCATTGAATATGAGATGTTGGATGGG 60.572 42.308 0.00 0.00 0.00 4.00
4281 5483 5.910355 TGAATATGAGATGTTGGATGGGA 57.090 39.130 0.00 0.00 0.00 4.37
4282 5484 6.458630 TGAATATGAGATGTTGGATGGGAT 57.541 37.500 0.00 0.00 0.00 3.85
4283 5485 6.855667 TGAATATGAGATGTTGGATGGGATT 58.144 36.000 0.00 0.00 0.00 3.01
4285 5487 8.105197 TGAATATGAGATGTTGGATGGGATTAG 58.895 37.037 0.00 0.00 0.00 1.73
4289 5491 5.665360 TGAGATGTTGGATGGGATTAGTGTA 59.335 40.000 0.00 0.00 0.00 2.90
4302 5504 2.762535 TAGTGTAGGGACTTTGCTGC 57.237 50.000 0.00 0.00 41.75 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 3.393089 AGCAAGTCTCAGTTCGAATGT 57.607 42.857 0.00 0.00 0.00 2.71
58 59 4.683781 CACTACTCAAGCAAGTCTCAGTTC 59.316 45.833 0.00 0.00 0.00 3.01
86 87 7.624549 TCTAAAGAAGGAAAGCATGTGACTAT 58.375 34.615 0.00 0.00 0.00 2.12
328 1307 0.608856 TCTCACATGTGGCGCCAAAT 60.609 50.000 34.66 30.64 0.00 2.32
338 1317 5.278660 GCTTCACAAAATCCTTCTCACATGT 60.279 40.000 0.00 0.00 0.00 3.21
426 1405 5.428783 ACCCTAGCTACAAAGGTATCAACAT 59.571 40.000 0.00 0.00 35.25 2.71
448 1427 0.909623 TGAAAGGGCCTAGTGCTACC 59.090 55.000 6.41 0.00 40.92 3.18
469 1448 6.721318 TGCTTCAATCTATCCAAAACTACCT 58.279 36.000 0.00 0.00 0.00 3.08
471 1450 7.500559 AGGATGCTTCAATCTATCCAAAACTAC 59.499 37.037 0.00 0.00 41.19 2.73
482 1461 4.164796 ACCACATCAGGATGCTTCAATCTA 59.835 41.667 9.12 0.00 42.39 1.98
515 1494 4.012374 CAAGCCTAATCATCACACCACTT 58.988 43.478 0.00 0.00 0.00 3.16
541 1520 0.037303 CACACCAGGATGTTCCAGCT 59.963 55.000 0.00 0.00 39.61 4.24
548 1527 3.779444 TCTAGAAGTCACACCAGGATGT 58.221 45.455 0.00 0.00 0.00 3.06
561 1540 7.984050 CCAACATTACATCACTGATCTAGAAGT 59.016 37.037 0.00 0.00 0.00 3.01
650 1642 2.154567 ATAGGCACCCTCGTGTTAGA 57.845 50.000 0.00 0.00 42.39 2.10
666 1658 9.754382 ATTTGTAGAATAAAATGGCTGCAATAG 57.246 29.630 0.50 0.00 33.99 1.73
714 1706 3.866910 TGAACGGAGCGAATATTGGTAAC 59.133 43.478 0.00 0.00 0.00 2.50
794 1788 6.150976 ACAGACTGAAATGAGTGAACAAACAA 59.849 34.615 10.08 0.00 0.00 2.83
849 1843 7.669722 AGATCAGAGGGAGTATAAGATGTCTTC 59.330 40.741 0.00 0.00 37.40 2.87
852 1846 6.945435 TCAGATCAGAGGGAGTATAAGATGTC 59.055 42.308 0.00 0.00 0.00 3.06
870 1864 8.853126 GGACCATTTTGATGATTTATCAGATCA 58.147 33.333 0.00 0.00 46.01 2.92
944 1953 7.792374 TCGGAGATTCAAATAAGAAATGGAG 57.208 36.000 0.00 0.00 0.00 3.86
968 1977 0.332972 GGGGATTGGCTCCTCTGTTT 59.667 55.000 0.00 0.00 41.91 2.83
1079 2089 3.846430 GGAGGAGGTTACCGGCGG 61.846 72.222 27.06 27.06 34.73 6.13
1162 2172 1.735376 GCGGCGTAGGAGAGGATGAA 61.735 60.000 9.37 0.00 0.00 2.57
1491 2501 2.509336 CCACAGGCGGCGTAGAAG 60.509 66.667 9.37 0.00 0.00 2.85
1581 2591 2.033448 TTGGCCAAGAACGCGGAT 59.967 55.556 16.05 0.00 0.00 4.18
1621 2631 1.618876 ATCATACCGACCAACGCCCA 61.619 55.000 0.00 0.00 41.07 5.36
1662 2672 2.811317 GAGACCAAGCTCGCCACG 60.811 66.667 0.00 0.00 0.00 4.94
1731 2741 2.747460 TTCAGCGCCAGTCCATGC 60.747 61.111 2.29 0.00 0.00 4.06
1768 2778 3.379372 ACCAATGCATTTCCGAGATTGAG 59.621 43.478 9.83 0.00 0.00 3.02
1776 2786 4.935702 ACATATCAACCAATGCATTTCCG 58.064 39.130 9.83 2.75 0.00 4.30
2039 3049 8.516234 AGTCCATTGCTCTCTTTATACTATACG 58.484 37.037 0.00 0.00 0.00 3.06
2193 3203 1.614903 TCAGCTCCATTTTGCACAAGG 59.385 47.619 0.00 0.00 0.00 3.61
2385 3395 5.909054 CGCGTACATATCAATCAAAGCATTT 59.091 36.000 0.00 0.00 40.26 2.32
2427 3437 5.844301 AGTCAAAAATATTTTGCGCCAAG 57.156 34.783 14.04 0.36 0.00 3.61
2685 3695 7.849804 AGTATACAAACCTAGCAGTGAATTG 57.150 36.000 5.50 0.00 0.00 2.32
2727 3737 7.394016 TCCTATTGAAGATCTTTGTTGCAGTA 58.606 34.615 9.87 3.20 0.00 2.74
2799 3809 1.907255 TCAATTTGGCCATGCATTCCA 59.093 42.857 6.09 12.22 0.00 3.53
2808 3818 3.401182 GAAAGCAACATCAATTTGGCCA 58.599 40.909 0.00 0.00 0.00 5.36
2910 3920 1.691196 CTTTCTCAACAAGCCCACCA 58.309 50.000 0.00 0.00 0.00 4.17
2935 3945 3.665323 GCACGCATTTGACTGAAGTACTG 60.665 47.826 0.00 0.00 0.00 2.74
3050 4060 1.284491 TGGCATGGAAAGGCATGTCTA 59.716 47.619 0.00 0.00 36.56 2.59
3063 4073 1.105457 ACACATCGGAATTGGCATGG 58.895 50.000 0.00 0.00 0.00 3.66
3207 4217 3.390521 CACCTACCAGCCTCGGCA 61.391 66.667 11.02 0.00 44.88 5.69
3210 4220 0.179073 CATTCCACCTACCAGCCTCG 60.179 60.000 0.00 0.00 0.00 4.63
3476 4488 6.422223 GCATTCCTTCATTATTACAGTGACG 58.578 40.000 0.00 0.00 0.00 4.35
3489 4501 2.437281 ACTCCTCATCGCATTCCTTCAT 59.563 45.455 0.00 0.00 0.00 2.57
3521 4533 2.534298 TCGACGACTACGGTCTTCTAG 58.466 52.381 0.00 0.00 44.46 2.43
3545 4557 2.455674 TGTCAGGTCATACAGTGCAC 57.544 50.000 9.40 9.40 0.00 4.57
3606 4618 7.445945 ACTCCATTAGCAAAGATATGTAGACC 58.554 38.462 0.00 0.00 0.00 3.85
3698 4712 3.817647 GCTGGACAGAACTTCAGAAATGT 59.182 43.478 3.00 0.00 0.00 2.71
3734 4748 1.473258 TTGGGTATGCCAATGACTGC 58.527 50.000 1.04 0.00 36.17 4.40
3792 4806 8.262715 TCATCGCATTTACTATTCAAAGTTGA 57.737 30.769 0.00 0.00 34.92 3.18
3817 4831 7.623999 TCAGGATTATCTTCTTGCTTATCCT 57.376 36.000 0.00 0.00 40.66 3.24
4018 5186 3.202906 AGTTTCAGCAACTTTAGTGCGA 58.797 40.909 0.00 0.00 43.89 5.10
4019 5187 3.609103 AGTTTCAGCAACTTTAGTGCG 57.391 42.857 0.00 0.00 43.89 5.34
4173 5341 2.232399 TGCTTCAGTCACATGCACAAT 58.768 42.857 0.00 0.00 0.00 2.71
4180 5348 3.079578 CCAGTTGATGCTTCAGTCACAT 58.920 45.455 2.23 0.00 32.27 3.21
4265 5467 4.474651 ACACTAATCCCATCCAACATCTCA 59.525 41.667 0.00 0.00 0.00 3.27
4268 5470 5.308825 CCTACACTAATCCCATCCAACATC 58.691 45.833 0.00 0.00 0.00 3.06
4269 5471 4.104738 CCCTACACTAATCCCATCCAACAT 59.895 45.833 0.00 0.00 0.00 2.71
4270 5472 3.458118 CCCTACACTAATCCCATCCAACA 59.542 47.826 0.00 0.00 0.00 3.33
4271 5473 3.714798 TCCCTACACTAATCCCATCCAAC 59.285 47.826 0.00 0.00 0.00 3.77
4272 5474 3.714798 GTCCCTACACTAATCCCATCCAA 59.285 47.826 0.00 0.00 0.00 3.53
4273 5475 3.051341 AGTCCCTACACTAATCCCATCCA 60.051 47.826 0.00 0.00 0.00 3.41
4274 5476 3.588569 AGTCCCTACACTAATCCCATCC 58.411 50.000 0.00 0.00 0.00 3.51
4275 5477 5.368989 CAAAGTCCCTACACTAATCCCATC 58.631 45.833 0.00 0.00 0.00 3.51
4276 5478 4.385310 GCAAAGTCCCTACACTAATCCCAT 60.385 45.833 0.00 0.00 0.00 4.00
4277 5479 3.054655 GCAAAGTCCCTACACTAATCCCA 60.055 47.826 0.00 0.00 0.00 4.37
4278 5480 3.200165 AGCAAAGTCCCTACACTAATCCC 59.800 47.826 0.00 0.00 0.00 3.85
4279 5481 4.192317 CAGCAAAGTCCCTACACTAATCC 58.808 47.826 0.00 0.00 0.00 3.01
4280 5482 3.623510 GCAGCAAAGTCCCTACACTAATC 59.376 47.826 0.00 0.00 0.00 1.75
4281 5483 3.610911 GCAGCAAAGTCCCTACACTAAT 58.389 45.455 0.00 0.00 0.00 1.73
4282 5484 2.290071 GGCAGCAAAGTCCCTACACTAA 60.290 50.000 0.00 0.00 0.00 2.24
4283 5485 1.278127 GGCAGCAAAGTCCCTACACTA 59.722 52.381 0.00 0.00 0.00 2.74
4285 5487 0.250727 TGGCAGCAAAGTCCCTACAC 60.251 55.000 0.00 0.00 0.00 2.90
4289 5491 0.610232 GTCATGGCAGCAAAGTCCCT 60.610 55.000 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.