Multiple sequence alignment - TraesCS2B01G582500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G582500 chr2B 100.000 2605 0 0 1 2605 770057135 770054531 0.000000e+00 4811.0
1 TraesCS2B01G582500 chr2D 90.476 1722 87 40 580 2258 627628366 627630053 0.000000e+00 2200.0
2 TraesCS2B01G582500 chr2D 88.663 591 50 12 1 588 627626080 627626656 0.000000e+00 704.0
3 TraesCS2B01G582500 chr2D 94.326 282 13 3 2250 2531 627630246 627630524 1.850000e-116 429.0
4 TraesCS2B01G582500 chr2D 81.424 323 32 12 1840 2144 605937012 605937324 3.350000e-59 239.0
5 TraesCS2B01G582500 chr2A 89.016 1830 104 46 1 1811 758274273 758272522 0.000000e+00 2176.0
6 TraesCS2B01G582500 chr2A 88.813 438 37 2 1832 2258 758272360 758271924 6.390000e-146 527.0
7 TraesCS2B01G582500 chr2A 92.935 184 11 2 2250 2432 758271588 758271406 1.540000e-67 267.0
8 TraesCS2B01G582500 chr6A 97.297 74 2 0 2532 2605 595891755 595891828 2.720000e-25 126.0
9 TraesCS2B01G582500 chr3D 97.297 74 2 0 2532 2605 543683995 543684068 2.720000e-25 126.0
10 TraesCS2B01G582500 chr3B 97.297 74 2 0 2532 2605 752136146 752136073 2.720000e-25 126.0
11 TraesCS2B01G582500 chr3B 94.872 78 4 0 2528 2605 433680586 433680663 3.520000e-24 122.0
12 TraesCS2B01G582500 chr3B 91.667 84 7 0 2522 2605 727479433 727479516 1.640000e-22 117.0
13 TraesCS2B01G582500 chr7B 96.053 76 3 0 2530 2605 32588051 32587976 9.790000e-25 124.0
14 TraesCS2B01G582500 chr3A 97.260 73 2 0 2532 2604 712873597 712873669 9.790000e-25 124.0
15 TraesCS2B01G582500 chr5B 94.872 78 4 0 2527 2604 590645682 590645759 3.520000e-24 122.0
16 TraesCS2B01G582500 chr5B 89.062 64 5 2 2346 2408 311072583 311072645 7.730000e-11 78.7
17 TraesCS2B01G582500 chr4A 94.595 74 4 0 2532 2605 637128412 637128339 5.890000e-22 115.0
18 TraesCS2B01G582500 chr4A 88.158 76 8 1 2349 2423 571593162 571593237 3.570000e-14 89.8
19 TraesCS2B01G582500 chr4D 100.000 33 0 0 2371 2403 44415687 44415655 7.780000e-06 62.1
20 TraesCS2B01G582500 chr6D 84.746 59 8 1 2350 2408 293310112 293310055 1.010000e-04 58.4
21 TraesCS2B01G582500 chr5D 87.500 48 6 0 2170 2217 331202249 331202296 3.620000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G582500 chr2B 770054531 770057135 2604 True 4811 4811 100.000000 1 2605 1 chr2B.!!$R1 2604
1 TraesCS2B01G582500 chr2D 627626080 627630524 4444 False 1111 2200 91.155000 1 2531 3 chr2D.!!$F2 2530
2 TraesCS2B01G582500 chr2A 758271406 758274273 2867 True 990 2176 90.254667 1 2432 3 chr2A.!!$R1 2431

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
620 2351 1.767759 ACAGGAAAGCTGCACAAGTT 58.232 45.0 1.02 0.0 0.0 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2052 3942 0.108377 TGACCAATCCCACACGATCG 60.108 55.0 14.88 14.88 0.0 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 2.488153 GCTTTTGTTAGCTTCCCATCGT 59.512 45.455 0.00 0.00 38.15 3.73
49 50 6.827586 TTGTTAGCTTCCCATCGTATTTTT 57.172 33.333 0.00 0.00 0.00 1.94
496 509 4.508662 AGCTCCTTCGAAAAAGTATCCAG 58.491 43.478 0.00 0.00 0.00 3.86
503 516 2.084546 GAAAAAGTATCCAGCAGCCGT 58.915 47.619 0.00 0.00 0.00 5.68
590 603 7.545265 CCAGCCGAATTAAAAATCAATCAAAGA 59.455 33.333 0.00 0.00 0.00 2.52
594 607 9.294030 CCGAATTAAAAATCAATCAAAGAGAGG 57.706 33.333 0.00 0.00 0.00 3.69
620 2351 1.767759 ACAGGAAAGCTGCACAAGTT 58.232 45.000 1.02 0.00 0.00 2.66
654 2385 3.142838 CCGGCCCATTTGCTCCAG 61.143 66.667 0.00 0.00 0.00 3.86
1140 2877 1.300311 CACGTACAACGACTGGGCA 60.300 57.895 6.44 0.00 46.05 5.36
1180 2917 2.126580 GCGACAGCGTCCGTAAGT 60.127 61.111 0.00 0.00 40.36 2.24
1181 2918 2.150837 GCGACAGCGTCCGTAAGTC 61.151 63.158 0.00 0.00 40.36 3.01
1183 2920 1.153881 GACAGCGTCCGTAAGTCCC 60.154 63.158 0.00 0.00 0.00 4.46
1184 2921 2.202570 CAGCGTCCGTAAGTCCCG 60.203 66.667 0.00 0.00 0.00 5.14
1210 2951 0.461870 CCGCTCGTTTGATCCATCCA 60.462 55.000 0.00 0.00 0.00 3.41
1219 2960 1.293498 GATCCATCCACCCGATCGG 59.707 63.158 27.65 27.65 37.81 4.18
1242 2983 4.911514 ACGCCTTATTTGTTGACACTTT 57.088 36.364 0.00 0.00 0.00 2.66
1243 2984 4.606961 ACGCCTTATTTGTTGACACTTTG 58.393 39.130 0.00 0.00 0.00 2.77
1245 2986 4.440758 CGCCTTATTTGTTGACACTTTGTG 59.559 41.667 0.00 0.00 39.75 3.33
1246 2987 4.209080 GCCTTATTTGTTGACACTTTGTGC 59.791 41.667 0.00 0.00 36.98 4.57
1254 2995 4.274705 TGTTGACACTTTGTGCGTGAATAT 59.725 37.500 0.00 0.00 36.98 1.28
1255 2996 4.403015 TGACACTTTGTGCGTGAATATG 57.597 40.909 0.00 0.00 36.98 1.78
1256 2997 3.812609 TGACACTTTGTGCGTGAATATGT 59.187 39.130 0.00 0.00 36.98 2.29
1257 2998 4.145876 ACACTTTGTGCGTGAATATGTG 57.854 40.909 0.00 0.00 36.98 3.21
1258 2999 3.812609 ACACTTTGTGCGTGAATATGTGA 59.187 39.130 0.00 0.00 36.98 3.58
1422 3163 2.499685 CGGGCCCCTTCTACTTCG 59.500 66.667 18.66 0.00 0.00 3.79
1587 3328 2.694760 GCCCTTTTGCCTGCTCTCG 61.695 63.158 0.00 0.00 0.00 4.04
1667 3408 5.596361 AGATATATAATCTGAGCACCCCTCG 59.404 44.000 0.00 0.00 43.82 4.63
1670 3411 0.984230 AATCTGAGCACCCCTCGAAA 59.016 50.000 0.00 0.00 43.82 3.46
1672 3413 0.762418 TCTGAGCACCCCTCGAAAAA 59.238 50.000 0.00 0.00 43.82 1.94
1760 3501 3.624326 TCAACTTGTTGATCGGCTTTG 57.376 42.857 11.62 0.00 0.00 2.77
1770 3511 3.283684 CGGCTTTGCACCGTTCCA 61.284 61.111 6.09 0.00 45.70 3.53
1771 3512 2.625823 CGGCTTTGCACCGTTCCAT 61.626 57.895 6.09 0.00 45.70 3.41
1772 3513 1.212751 GGCTTTGCACCGTTCCATC 59.787 57.895 0.00 0.00 0.00 3.51
1806 3547 5.340027 CCCCTAAAAGCTCTCCTTCCATAAA 60.340 44.000 0.00 0.00 31.99 1.40
1811 3552 3.110705 AGCTCTCCTTCCATAAAGCAGA 58.889 45.455 0.00 0.00 33.29 4.26
1865 3747 3.118408 TCTTCATCCTAACATGGGAACGG 60.118 47.826 0.00 0.00 36.37 4.44
1889 3771 3.942829 TGAAATTCAGAAGACTCGCCAT 58.057 40.909 0.00 0.00 0.00 4.40
1924 3814 4.457834 AGCAGATTGAGTGTAGTGTACC 57.542 45.455 0.00 0.00 0.00 3.34
1958 3848 1.069636 GTGTGCACTACTTTCTGCTGC 60.070 52.381 19.41 0.00 34.29 5.25
1966 3856 1.251251 ACTTTCTGCTGCATGGGTTC 58.749 50.000 1.31 0.00 0.00 3.62
1981 3871 2.819608 TGGGTTCATTGCTAGTGCTTTC 59.180 45.455 0.00 0.00 40.48 2.62
2001 3891 5.356882 TTCCTGCTTCAAGTCATTAAACG 57.643 39.130 0.00 0.00 0.00 3.60
2032 3922 5.748630 GCAGATCGTTGTACATTCAGTGATA 59.251 40.000 0.00 0.00 0.00 2.15
2045 3935 4.597404 TCAGTGATAGCCAATCTAGCAG 57.403 45.455 0.00 0.00 43.56 4.24
2052 3942 1.227674 CCAATCTAGCAGGCGACCC 60.228 63.158 0.00 0.00 0.00 4.46
2086 3976 3.060479 TGGTCATTAGTAGGGCCTCAT 57.940 47.619 10.74 1.60 0.00 2.90
2098 3988 0.620556 GGCCTCATCCTTTGTCTGGA 59.379 55.000 0.00 0.00 38.06 3.86
2186 4087 5.941788 AGGAAAGAGTCAATTACACCACTT 58.058 37.500 0.00 0.00 0.00 3.16
2206 4107 3.936902 TGTGCTAAAACTTGACGTGAC 57.063 42.857 0.00 0.00 0.00 3.67
2225 4126 4.942852 TGACAAATCACTTTGCCGATTTT 58.057 34.783 0.00 0.00 44.63 1.82
2251 4152 1.540267 GATCGGCCTACGCATCTAAGA 59.460 52.381 0.00 0.00 43.86 2.10
2253 4154 1.540267 TCGGCCTACGCATCTAAGATC 59.460 52.381 0.00 0.00 43.86 2.75
2271 4516 4.312443 AGATCGTTGAAACACCGTAATGT 58.688 39.130 0.00 0.00 0.00 2.71
2318 4563 1.440145 GCTGCAATCCGTCCTAAGGC 61.440 60.000 0.00 0.00 0.00 4.35
2344 4589 2.727123 TGCAGGAAGGAAACACTTGA 57.273 45.000 0.00 0.00 0.00 3.02
2346 4591 3.360867 TGCAGGAAGGAAACACTTGAAA 58.639 40.909 0.00 0.00 0.00 2.69
2351 4596 3.243535 GGAAGGAAACACTTGAAAGGCAG 60.244 47.826 0.00 0.00 0.00 4.85
2407 4652 7.601886 CAGATGTACACCCAATTATTTTTGCAA 59.398 33.333 0.00 0.00 0.00 4.08
2408 4653 8.320617 AGATGTACACCCAATTATTTTTGCAAT 58.679 29.630 0.00 0.00 0.00 3.56
2459 4707 2.158900 CCAATAGGCTCGGTTCATGAGT 60.159 50.000 0.00 0.00 35.85 3.41
2474 4722 2.444140 AGTAGCCCACTAGCCCGG 60.444 66.667 0.00 0.00 34.98 5.73
2491 4739 1.213799 GGCAGCAAAGCTAGCAACC 59.786 57.895 18.83 9.51 36.40 3.77
2521 4769 1.715785 TCTGTCCACAGTCCACATGA 58.284 50.000 0.00 0.00 44.12 3.07
2531 4779 1.670730 TCCACATGAACGCACGCAT 60.671 52.632 0.00 0.00 0.00 4.73
2532 4780 1.226101 CCACATGAACGCACGCATC 60.226 57.895 0.00 0.00 0.00 3.91
2533 4781 1.496835 CACATGAACGCACGCATCA 59.503 52.632 0.00 2.25 0.00 3.07
2534 4782 0.519792 CACATGAACGCACGCATCAG 60.520 55.000 0.00 1.83 0.00 2.90
2535 4783 1.061411 CATGAACGCACGCATCAGG 59.939 57.895 5.55 2.02 0.00 3.86
2536 4784 2.108514 ATGAACGCACGCATCAGGG 61.109 57.895 5.55 0.00 0.00 4.45
2537 4785 2.742372 GAACGCACGCATCAGGGT 60.742 61.111 0.00 0.00 42.26 4.34
2543 4791 2.347490 ACGCATCAGGGTGGACAC 59.653 61.111 0.00 0.00 39.73 3.67
2544 4792 2.815211 CGCATCAGGGTGGACACG 60.815 66.667 0.00 0.00 0.00 4.49
2545 4793 2.436646 GCATCAGGGTGGACACGG 60.437 66.667 0.00 0.00 0.00 4.94
2546 4794 3.068881 CATCAGGGTGGACACGGT 58.931 61.111 0.00 0.00 0.00 4.83
2547 4795 1.079127 CATCAGGGTGGACACGGTC 60.079 63.158 0.00 0.00 0.00 4.79
2581 4829 2.048503 CGGTCCGAGCCGTTCTTT 60.049 61.111 4.91 0.00 46.11 2.52
2582 4830 2.380410 CGGTCCGAGCCGTTCTTTG 61.380 63.158 4.91 0.00 46.11 2.77
2583 4831 2.033194 GGTCCGAGCCGTTCTTTGG 61.033 63.158 0.00 0.00 0.00 3.28
2584 4832 1.005394 GTCCGAGCCGTTCTTTGGA 60.005 57.895 0.00 0.00 0.00 3.53
2585 4833 1.005394 TCCGAGCCGTTCTTTGGAC 60.005 57.895 0.00 0.00 0.00 4.02
2586 4834 2.033194 CCGAGCCGTTCTTTGGACC 61.033 63.158 0.00 0.00 0.00 4.46
2587 4835 2.380410 CGAGCCGTTCTTTGGACCG 61.380 63.158 0.00 0.00 0.00 4.79
2590 4838 3.053896 CCGTTCTTTGGACCGGCC 61.054 66.667 0.00 4.32 40.40 6.13
2591 4839 3.419759 CGTTCTTTGGACCGGCCG 61.420 66.667 21.04 21.04 40.66 6.13
2592 4840 3.733960 GTTCTTTGGACCGGCCGC 61.734 66.667 22.85 6.98 40.66 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.807392 CAAAAGCCAAATTGGTTCGCAT 59.193 40.909 14.17 0.00 40.46 4.73
8 9 2.208431 CAAAAGCCAAATTGGTTCGCA 58.792 42.857 14.17 0.00 40.46 5.10
12 13 5.034852 AGCTAACAAAAGCCAAATTGGTT 57.965 34.783 14.17 4.43 43.86 3.67
59 60 8.829612 GGACAAACAATGAGAAAAATCACAATT 58.170 29.630 0.00 0.00 30.46 2.32
60 61 7.169645 CGGACAAACAATGAGAAAAATCACAAT 59.830 33.333 0.00 0.00 30.46 2.71
72 74 3.369546 AAAAGCCGGACAAACAATGAG 57.630 42.857 5.05 0.00 0.00 2.90
480 493 2.747446 GGCTGCTGGATACTTTTTCGAA 59.253 45.455 0.00 0.00 37.61 3.71
482 495 1.062587 CGGCTGCTGGATACTTTTTCG 59.937 52.381 0.00 0.00 37.61 3.46
483 496 2.084546 ACGGCTGCTGGATACTTTTTC 58.915 47.619 13.87 0.00 37.61 2.29
620 2351 1.602237 GGCCCACTGTAGCAAGCTA 59.398 57.895 0.00 0.00 0.00 3.32
654 2385 1.817099 CCTTGATCTGCGTGGCTCC 60.817 63.158 0.00 0.00 0.00 4.70
691 2422 3.441011 ATTCGATCCACCCGTCGCC 62.441 63.158 0.00 0.00 37.74 5.54
782 2513 2.107141 GAGGTCGAGAATGGCGGG 59.893 66.667 0.00 0.00 0.00 6.13
945 2676 3.330720 CTTGGGTTCCCTCCGGCT 61.331 66.667 9.43 0.00 0.00 5.52
971 2702 3.708734 CCGGACGACAACAACGCC 61.709 66.667 0.00 0.00 0.00 5.68
1120 2857 1.006571 CCCAGTCGTTGTACGTGCT 60.007 57.895 4.97 0.00 43.14 4.40
1140 2877 0.108138 CGAGGAAGCGGTTCTTGGAT 60.108 55.000 25.05 8.04 34.56 3.41
1219 2960 5.352643 AAGTGTCAACAAATAAGGCGTAC 57.647 39.130 0.00 0.00 0.00 3.67
1226 2967 4.795795 CACGCACAAAGTGTCAACAAATAA 59.204 37.500 0.00 0.00 39.40 1.40
1227 2968 4.095036 TCACGCACAAAGTGTCAACAAATA 59.905 37.500 0.00 0.00 39.40 1.40
1228 2969 3.119673 TCACGCACAAAGTGTCAACAAAT 60.120 39.130 0.00 0.00 39.40 2.32
1242 2983 3.002553 GCATCATCACATATTCACGCACA 59.997 43.478 0.00 0.00 0.00 4.57
1243 2984 3.548587 GCATCATCACATATTCACGCAC 58.451 45.455 0.00 0.00 0.00 5.34
1245 2986 2.221749 ACGCATCATCACATATTCACGC 59.778 45.455 0.00 0.00 0.00 5.34
1246 2987 3.245990 ACACGCATCATCACATATTCACG 59.754 43.478 0.00 0.00 0.00 4.35
1254 2995 1.066286 TCCATCACACGCATCATCACA 60.066 47.619 0.00 0.00 0.00 3.58
1255 2996 1.655484 TCCATCACACGCATCATCAC 58.345 50.000 0.00 0.00 0.00 3.06
1256 2997 2.614983 CAATCCATCACACGCATCATCA 59.385 45.455 0.00 0.00 0.00 3.07
1257 2998 2.031420 CCAATCCATCACACGCATCATC 60.031 50.000 0.00 0.00 0.00 2.92
1258 2999 1.951602 CCAATCCATCACACGCATCAT 59.048 47.619 0.00 0.00 0.00 2.45
1587 3328 1.071605 GATCAGACACCGAGCACAAC 58.928 55.000 0.00 0.00 0.00 3.32
1645 3386 5.519808 TCGAGGGGTGCTCAGATTATATAT 58.480 41.667 0.00 0.00 0.00 0.86
1646 3387 4.930696 TCGAGGGGTGCTCAGATTATATA 58.069 43.478 0.00 0.00 0.00 0.86
1647 3388 3.779444 TCGAGGGGTGCTCAGATTATAT 58.221 45.455 0.00 0.00 0.00 0.86
1648 3389 3.238788 TCGAGGGGTGCTCAGATTATA 57.761 47.619 0.00 0.00 0.00 0.98
1672 3413 5.665459 AGCACGCTCAGATTATCTAGTTTT 58.335 37.500 0.00 0.00 0.00 2.43
1676 3417 6.385843 ACATAAGCACGCTCAGATTATCTAG 58.614 40.000 0.00 0.00 0.00 2.43
1677 3418 6.332735 ACATAAGCACGCTCAGATTATCTA 57.667 37.500 0.00 0.00 0.00 1.98
1741 3482 2.053627 GCAAAGCCGATCAACAAGTTG 58.946 47.619 6.60 6.60 41.71 3.16
1760 3501 0.734889 CATGGAAGATGGAACGGTGC 59.265 55.000 0.00 0.00 0.00 5.01
1765 3506 2.024941 AGGGGAACATGGAAGATGGAAC 60.025 50.000 0.00 0.00 0.00 3.62
1766 3507 2.287584 AGGGGAACATGGAAGATGGAA 58.712 47.619 0.00 0.00 0.00 3.53
1767 3508 1.985622 AGGGGAACATGGAAGATGGA 58.014 50.000 0.00 0.00 0.00 3.41
1768 3509 3.951563 TTAGGGGAACATGGAAGATGG 57.048 47.619 0.00 0.00 0.00 3.51
1769 3510 4.098501 GCTTTTAGGGGAACATGGAAGATG 59.901 45.833 0.00 0.00 0.00 2.90
1770 3511 4.017130 AGCTTTTAGGGGAACATGGAAGAT 60.017 41.667 0.00 0.00 0.00 2.40
1771 3512 3.333680 AGCTTTTAGGGGAACATGGAAGA 59.666 43.478 0.00 0.00 0.00 2.87
1772 3513 3.696548 GAGCTTTTAGGGGAACATGGAAG 59.303 47.826 0.00 0.00 0.00 3.46
1865 3747 4.393062 TGGCGAGTCTTCTGAATTTCAATC 59.607 41.667 0.01 0.00 0.00 2.67
1924 3814 2.032634 CACACATCGTTCCACCCCG 61.033 63.158 0.00 0.00 0.00 5.73
1958 3848 2.372264 AGCACTAGCAATGAACCCATG 58.628 47.619 0.00 0.00 45.49 3.66
1966 3856 2.089980 AGCAGGAAAGCACTAGCAATG 58.910 47.619 0.00 0.00 45.49 2.82
1981 3871 5.356882 TTCGTTTAATGACTTGAAGCAGG 57.643 39.130 0.00 0.00 0.00 4.85
2001 3891 4.725556 TGTACAACGATCTGCTTGTTTC 57.274 40.909 0.00 2.67 32.77 2.78
2032 3922 1.144936 GTCGCCTGCTAGATTGGCT 59.855 57.895 15.64 0.00 44.09 4.75
2052 3942 0.108377 TGACCAATCCCACACGATCG 60.108 55.000 14.88 14.88 0.00 3.69
2186 4087 3.263261 TGTCACGTCAAGTTTTAGCACA 58.737 40.909 0.00 0.00 0.00 4.57
2206 4107 4.305769 TCCAAAATCGGCAAAGTGATTTG 58.694 39.130 1.39 0.00 42.37 2.32
2225 4126 2.916052 GCGTAGGCCGATCGATCCA 61.916 63.158 18.66 5.68 39.56 3.41
2271 4516 1.150536 GCCCCACTGAAGACAACCA 59.849 57.895 0.00 0.00 0.00 3.67
2351 4596 1.526917 CTCATGGTGGATTCGGCCC 60.527 63.158 0.00 0.00 0.00 5.80
2414 4662 6.099413 GGGCCTTTAGGGAGTACATATATACC 59.901 46.154 0.84 0.00 37.23 2.73
2449 4697 2.483889 GCTAGTGGGCTACTCATGAACC 60.484 54.545 6.84 0.00 40.89 3.62
2459 4707 4.789173 TGCCGGGCTAGTGGGCTA 62.789 66.667 21.46 0.00 46.97 3.93
2474 4722 0.109412 CTGGTTGCTAGCTTTGCTGC 60.109 55.000 17.23 0.00 40.10 5.25
2491 4739 0.947244 GTGGACAGAAGTGGTTGCTG 59.053 55.000 0.00 0.00 35.81 4.41
2521 4769 3.049674 CACCCTGATGCGTGCGTT 61.050 61.111 0.00 0.00 0.00 4.84
2565 4813 2.033194 CCAAAGAACGGCTCGGACC 61.033 63.158 0.00 0.00 0.00 4.46
2566 4814 1.005394 TCCAAAGAACGGCTCGGAC 60.005 57.895 0.00 0.00 0.00 4.79
2567 4815 1.005394 GTCCAAAGAACGGCTCGGA 60.005 57.895 0.00 0.00 0.00 4.55
2568 4816 2.033194 GGTCCAAAGAACGGCTCGG 61.033 63.158 0.00 0.00 0.00 4.63
2569 4817 3.562635 GGTCCAAAGAACGGCTCG 58.437 61.111 0.00 0.00 0.00 5.03
2575 4823 3.733960 GCGGCCGGTCCAAAGAAC 61.734 66.667 29.38 1.03 34.01 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.