Multiple sequence alignment - TraesCS2B01G582100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G582100 chr2B 100.000 2495 0 0 1 2495 769492311 769489817 0.000000e+00 4608
1 TraesCS2B01G582100 chr2B 87.500 1304 107 32 474 1752 769379141 769377869 0.000000e+00 1454
2 TraesCS2B01G582100 chr2B 87.146 1307 109 33 474 1752 769429450 769428175 0.000000e+00 1428
3 TraesCS2B01G582100 chr2B 86.555 1309 105 28 474 1752 769307977 769306710 0.000000e+00 1376
4 TraesCS2B01G582100 chr2B 86.555 1309 105 28 474 1752 769336448 769335181 0.000000e+00 1376
5 TraesCS2B01G582100 chr2B 92.613 731 30 10 1028 1752 769478557 769477845 0.000000e+00 1029
6 TraesCS2B01G582100 chr2D 89.042 1305 96 21 459 1752 627362220 627360952 0.000000e+00 1574
7 TraesCS2B01G582100 chr2D 91.803 549 38 2 1953 2495 11535069 11535616 0.000000e+00 758
8 TraesCS2B01G582100 chr2D 90.778 553 44 2 1949 2495 564119633 564120184 0.000000e+00 732
9 TraesCS2B01G582100 chrUn 86.555 1309 105 28 474 1752 316525499 316524232 0.000000e+00 1376
10 TraesCS2B01G582100 chrUn 86.419 1318 108 28 465 1752 316535477 316536753 0.000000e+00 1376
11 TraesCS2B01G582100 chr2A 84.694 1274 115 30 459 1712 758056579 758055366 0.000000e+00 1199
12 TraesCS2B01G582100 chr2A 83.184 446 55 12 2 431 37262529 37262970 8.370000e-105 390
13 TraesCS2B01G582100 chr3A 92.491 546 34 3 1951 2495 749476754 749477293 0.000000e+00 774
14 TraesCS2B01G582100 chr3A 81.918 365 62 4 77 440 650049125 650048764 3.120000e-79 305
15 TraesCS2B01G582100 chr7D 92.308 546 34 4 1951 2495 560252739 560252201 0.000000e+00 769
16 TraesCS2B01G582100 chr6D 91.758 546 36 4 1951 2495 433921421 433920884 0.000000e+00 750
17 TraesCS2B01G582100 chr6B 90.942 552 48 2 1944 2493 22838644 22838093 0.000000e+00 741
18 TraesCS2B01G582100 chr5B 90.744 551 39 4 1951 2494 217916799 217917344 0.000000e+00 725
19 TraesCS2B01G582100 chr5B 81.910 199 30 5 242 436 537952003 537952199 1.990000e-36 163
20 TraesCS2B01G582100 chr3B 90.792 543 47 3 1951 2493 821155415 821155954 0.000000e+00 723
21 TraesCS2B01G582100 chr7B 90.792 543 45 2 1953 2495 71177780 71177243 0.000000e+00 721
22 TraesCS2B01G582100 chr1A 92.955 440 29 2 2 440 334202457 334202019 7.520000e-180 640
23 TraesCS2B01G582100 chr1A 85.885 418 53 5 1 416 58933142 58933555 8.190000e-120 440
24 TraesCS2B01G582100 chr1B 92.483 439 30 3 2 439 448527748 448528184 2.110000e-175 625
25 TraesCS2B01G582100 chr4B 86.788 439 51 2 1 439 442972502 442972933 1.340000e-132 483
26 TraesCS2B01G582100 chr7A 84.354 441 59 6 2 439 516923423 516923856 8.250000e-115 424
27 TraesCS2B01G582100 chr7A 85.981 321 40 5 2 320 173706641 173706958 3.070000e-89 339
28 TraesCS2B01G582100 chr7A 84.138 145 21 2 1781 1925 675593082 675592940 3.350000e-29 139
29 TraesCS2B01G582100 chr5D 81.755 433 62 13 2 430 449657506 449657087 1.840000e-91 346


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G582100 chr2B 769489817 769492311 2494 True 4608 4608 100.000 1 2495 1 chr2B.!!$R6 2494
1 TraesCS2B01G582100 chr2B 769377869 769379141 1272 True 1454 1454 87.500 474 1752 1 chr2B.!!$R3 1278
2 TraesCS2B01G582100 chr2B 769428175 769429450 1275 True 1428 1428 87.146 474 1752 1 chr2B.!!$R4 1278
3 TraesCS2B01G582100 chr2B 769306710 769307977 1267 True 1376 1376 86.555 474 1752 1 chr2B.!!$R1 1278
4 TraesCS2B01G582100 chr2B 769335181 769336448 1267 True 1376 1376 86.555 474 1752 1 chr2B.!!$R2 1278
5 TraesCS2B01G582100 chr2B 769477845 769478557 712 True 1029 1029 92.613 1028 1752 1 chr2B.!!$R5 724
6 TraesCS2B01G582100 chr2D 627360952 627362220 1268 True 1574 1574 89.042 459 1752 1 chr2D.!!$R1 1293
7 TraesCS2B01G582100 chr2D 11535069 11535616 547 False 758 758 91.803 1953 2495 1 chr2D.!!$F1 542
8 TraesCS2B01G582100 chr2D 564119633 564120184 551 False 732 732 90.778 1949 2495 1 chr2D.!!$F2 546
9 TraesCS2B01G582100 chrUn 316524232 316525499 1267 True 1376 1376 86.555 474 1752 1 chrUn.!!$R1 1278
10 TraesCS2B01G582100 chrUn 316535477 316536753 1276 False 1376 1376 86.419 465 1752 1 chrUn.!!$F1 1287
11 TraesCS2B01G582100 chr2A 758055366 758056579 1213 True 1199 1199 84.694 459 1712 1 chr2A.!!$R1 1253
12 TraesCS2B01G582100 chr3A 749476754 749477293 539 False 774 774 92.491 1951 2495 1 chr3A.!!$F1 544
13 TraesCS2B01G582100 chr7D 560252201 560252739 538 True 769 769 92.308 1951 2495 1 chr7D.!!$R1 544
14 TraesCS2B01G582100 chr6D 433920884 433921421 537 True 750 750 91.758 1951 2495 1 chr6D.!!$R1 544
15 TraesCS2B01G582100 chr6B 22838093 22838644 551 True 741 741 90.942 1944 2493 1 chr6B.!!$R1 549
16 TraesCS2B01G582100 chr5B 217916799 217917344 545 False 725 725 90.744 1951 2494 1 chr5B.!!$F1 543
17 TraesCS2B01G582100 chr3B 821155415 821155954 539 False 723 723 90.792 1951 2493 1 chr3B.!!$F1 542
18 TraesCS2B01G582100 chr7B 71177243 71177780 537 True 721 721 90.792 1953 2495 1 chr7B.!!$R1 542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
366 367 0.108585 ATGCGGGGATGCTCGTATTT 59.891 50.0 8.73 0.0 35.36 1.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1574 1604 0.394762 ACTTGATCCGTGCCATGCAT 60.395 50.0 0.0 0.0 41.91 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.101790 CGATGCCCGTGTGTTGCC 62.102 66.667 0.00 0.00 0.00 4.52
26 27 2.983030 GATGCCCGTGTGTTGCCA 60.983 61.111 0.00 0.00 0.00 4.92
27 28 3.267597 GATGCCCGTGTGTTGCCAC 62.268 63.158 0.00 0.00 42.19 5.01
33 34 2.331451 GTGTGTTGCCACGAAGCC 59.669 61.111 0.00 0.00 44.92 4.35
34 35 2.124529 TGTGTTGCCACGAAGCCA 60.125 55.556 0.00 0.00 44.92 4.75
35 36 1.528076 TGTGTTGCCACGAAGCCAT 60.528 52.632 0.00 0.00 44.92 4.40
36 37 1.106351 TGTGTTGCCACGAAGCCATT 61.106 50.000 0.00 0.00 44.92 3.16
37 38 0.664166 GTGTTGCCACGAAGCCATTG 60.664 55.000 0.00 0.00 0.00 2.82
38 39 1.080569 GTTGCCACGAAGCCATTGG 60.081 57.895 0.00 0.00 0.00 3.16
48 49 2.590092 GCCATTGGCGTAGGAGGT 59.410 61.111 12.82 0.00 39.62 3.85
49 50 1.819632 GCCATTGGCGTAGGAGGTG 60.820 63.158 12.82 0.00 39.62 4.00
50 51 1.153168 CCATTGGCGTAGGAGGTGG 60.153 63.158 0.00 0.00 0.00 4.61
51 52 1.602237 CATTGGCGTAGGAGGTGGT 59.398 57.895 0.00 0.00 0.00 4.16
52 53 0.462047 CATTGGCGTAGGAGGTGGTC 60.462 60.000 0.00 0.00 0.00 4.02
62 63 2.484742 GGAGGTGGTCCAATAACGTT 57.515 50.000 5.88 5.88 46.10 3.99
63 64 3.615224 GGAGGTGGTCCAATAACGTTA 57.385 47.619 11.02 11.02 46.10 3.18
64 65 3.528532 GGAGGTGGTCCAATAACGTTAG 58.471 50.000 14.25 0.85 46.10 2.34
65 66 3.055602 GGAGGTGGTCCAATAACGTTAGT 60.056 47.826 14.25 8.45 46.10 2.24
66 67 3.930848 GAGGTGGTCCAATAACGTTAGTG 59.069 47.826 24.78 24.78 35.89 2.74
67 68 3.325716 AGGTGGTCCAATAACGTTAGTGT 59.674 43.478 27.95 10.21 35.89 3.55
68 69 3.681417 GGTGGTCCAATAACGTTAGTGTC 59.319 47.826 27.95 20.98 0.00 3.67
69 70 3.681417 GTGGTCCAATAACGTTAGTGTCC 59.319 47.826 27.95 26.75 0.00 4.02
70 71 3.579586 TGGTCCAATAACGTTAGTGTCCT 59.420 43.478 29.06 9.07 0.00 3.85
71 72 4.040706 TGGTCCAATAACGTTAGTGTCCTT 59.959 41.667 29.06 13.35 0.00 3.36
72 73 4.390909 GGTCCAATAACGTTAGTGTCCTTG 59.609 45.833 27.95 18.49 0.00 3.61
73 74 4.992951 GTCCAATAACGTTAGTGTCCTTGT 59.007 41.667 27.95 1.13 0.00 3.16
74 75 4.992319 TCCAATAACGTTAGTGTCCTTGTG 59.008 41.667 27.95 14.70 0.00 3.33
75 76 4.753107 CCAATAACGTTAGTGTCCTTGTGT 59.247 41.667 27.95 0.00 0.00 3.72
76 77 5.107220 CCAATAACGTTAGTGTCCTTGTGTC 60.107 44.000 27.95 0.00 0.00 3.67
77 78 2.521105 ACGTTAGTGTCCTTGTGTCC 57.479 50.000 0.00 0.00 0.00 4.02
78 79 1.269413 ACGTTAGTGTCCTTGTGTCCG 60.269 52.381 0.00 0.00 0.00 4.79
79 80 1.145803 GTTAGTGTCCTTGTGTCCGC 58.854 55.000 0.00 0.00 0.00 5.54
80 81 1.045407 TTAGTGTCCTTGTGTCCGCT 58.955 50.000 0.00 0.00 0.00 5.52
81 82 0.317160 TAGTGTCCTTGTGTCCGCTG 59.683 55.000 0.00 0.00 0.00 5.18
82 83 2.280797 TGTCCTTGTGTCCGCTGC 60.281 61.111 0.00 0.00 0.00 5.25
83 84 2.280797 GTCCTTGTGTCCGCTGCA 60.281 61.111 0.00 0.00 0.00 4.41
84 85 2.280797 TCCTTGTGTCCGCTGCAC 60.281 61.111 0.00 0.00 37.37 4.57
85 86 2.591429 CCTTGTGTCCGCTGCACA 60.591 61.111 0.00 0.00 44.05 4.57
88 89 4.155950 TGTGTCCGCTGCACAATT 57.844 50.000 0.00 0.00 42.96 2.32
89 90 2.413677 TGTGTCCGCTGCACAATTT 58.586 47.368 0.00 0.00 42.96 1.82
90 91 1.598882 TGTGTCCGCTGCACAATTTA 58.401 45.000 0.00 0.00 42.96 1.40
91 92 2.158559 TGTGTCCGCTGCACAATTTAT 58.841 42.857 0.00 0.00 42.96 1.40
92 93 2.095314 TGTGTCCGCTGCACAATTTATG 60.095 45.455 0.00 0.00 42.96 1.90
93 94 2.161410 GTGTCCGCTGCACAATTTATGA 59.839 45.455 0.00 0.00 36.88 2.15
94 95 3.016031 TGTCCGCTGCACAATTTATGAT 58.984 40.909 0.00 0.00 0.00 2.45
95 96 3.443329 TGTCCGCTGCACAATTTATGATT 59.557 39.130 0.00 0.00 0.00 2.57
96 97 4.637977 TGTCCGCTGCACAATTTATGATTA 59.362 37.500 0.00 0.00 0.00 1.75
97 98 5.207768 GTCCGCTGCACAATTTATGATTAG 58.792 41.667 0.00 0.00 0.00 1.73
98 99 4.881273 TCCGCTGCACAATTTATGATTAGT 59.119 37.500 0.00 0.00 0.00 2.24
99 100 6.018262 GTCCGCTGCACAATTTATGATTAGTA 60.018 38.462 0.00 0.00 0.00 1.82
100 101 6.540551 TCCGCTGCACAATTTATGATTAGTAA 59.459 34.615 0.00 0.00 0.00 2.24
101 102 7.066404 TCCGCTGCACAATTTATGATTAGTAAA 59.934 33.333 0.00 0.00 0.00 2.01
102 103 7.376866 CCGCTGCACAATTTATGATTAGTAAAG 59.623 37.037 0.00 0.00 0.00 1.85
103 104 8.122330 CGCTGCACAATTTATGATTAGTAAAGA 58.878 33.333 0.00 0.00 0.00 2.52
104 105 9.956720 GCTGCACAATTTATGATTAGTAAAGAT 57.043 29.630 0.00 0.00 0.00 2.40
120 121 9.656040 TTAGTAAAGATAGCAAAAATACGGTGA 57.344 29.630 0.00 0.00 0.00 4.02
121 122 8.197988 AGTAAAGATAGCAAAAATACGGTGAG 57.802 34.615 0.00 0.00 0.00 3.51
122 123 6.436843 AAAGATAGCAAAAATACGGTGAGG 57.563 37.500 0.00 0.00 0.00 3.86
123 124 4.451900 AGATAGCAAAAATACGGTGAGGG 58.548 43.478 0.00 0.00 0.00 4.30
124 125 1.834188 AGCAAAAATACGGTGAGGGG 58.166 50.000 0.00 0.00 0.00 4.79
125 126 0.172578 GCAAAAATACGGTGAGGGGC 59.827 55.000 0.00 0.00 0.00 5.80
126 127 1.540267 CAAAAATACGGTGAGGGGCA 58.460 50.000 0.00 0.00 0.00 5.36
127 128 2.099405 CAAAAATACGGTGAGGGGCAT 58.901 47.619 0.00 0.00 0.00 4.40
128 129 1.762708 AAAATACGGTGAGGGGCATG 58.237 50.000 0.00 0.00 0.00 4.06
129 130 0.751643 AAATACGGTGAGGGGCATGC 60.752 55.000 9.90 9.90 0.00 4.06
130 131 1.920734 AATACGGTGAGGGGCATGCA 61.921 55.000 21.36 0.00 0.00 3.96
131 132 1.920734 ATACGGTGAGGGGCATGCAA 61.921 55.000 21.36 0.00 0.00 4.08
132 133 1.920734 TACGGTGAGGGGCATGCAAT 61.921 55.000 21.36 3.85 0.00 3.56
148 149 6.971527 CATGCAATGCCAGAGAATTTTAAA 57.028 33.333 1.53 0.00 37.62 1.52
149 150 7.548196 CATGCAATGCCAGAGAATTTTAAAT 57.452 32.000 1.53 0.00 37.62 1.40
150 151 6.971527 TGCAATGCCAGAGAATTTTAAATG 57.028 33.333 1.53 0.00 0.00 2.32
151 152 6.699366 TGCAATGCCAGAGAATTTTAAATGA 58.301 32.000 1.53 0.00 0.00 2.57
152 153 6.591062 TGCAATGCCAGAGAATTTTAAATGAC 59.409 34.615 1.53 0.00 0.00 3.06
153 154 6.036408 GCAATGCCAGAGAATTTTAAATGACC 59.964 38.462 0.00 0.00 0.00 4.02
154 155 6.855763 ATGCCAGAGAATTTTAAATGACCA 57.144 33.333 0.00 0.00 0.00 4.02
155 156 6.855763 TGCCAGAGAATTTTAAATGACCAT 57.144 33.333 0.00 0.00 0.00 3.55
156 157 7.953005 TGCCAGAGAATTTTAAATGACCATA 57.047 32.000 0.00 0.00 0.00 2.74
157 158 7.999679 TGCCAGAGAATTTTAAATGACCATAG 58.000 34.615 0.00 0.00 0.00 2.23
158 159 7.615365 TGCCAGAGAATTTTAAATGACCATAGT 59.385 33.333 0.00 0.00 0.00 2.12
159 160 9.120538 GCCAGAGAATTTTAAATGACCATAGTA 57.879 33.333 0.00 0.00 0.00 1.82
166 167 9.762381 AATTTTAAATGACCATAGTAGTTGGGA 57.238 29.630 0.00 0.00 38.64 4.37
167 168 9.762381 ATTTTAAATGACCATAGTAGTTGGGAA 57.238 29.630 0.00 0.00 38.64 3.97
168 169 8.801882 TTTAAATGACCATAGTAGTTGGGAAG 57.198 34.615 0.00 0.00 38.64 3.46
169 170 6.636454 AAATGACCATAGTAGTTGGGAAGA 57.364 37.500 0.00 0.00 38.64 2.87
170 171 5.878406 ATGACCATAGTAGTTGGGAAGAG 57.122 43.478 0.00 0.00 38.64 2.85
171 172 4.942944 TGACCATAGTAGTTGGGAAGAGA 58.057 43.478 0.00 0.00 38.64 3.10
172 173 5.338632 TGACCATAGTAGTTGGGAAGAGAA 58.661 41.667 0.00 0.00 38.64 2.87
173 174 5.783360 TGACCATAGTAGTTGGGAAGAGAAA 59.217 40.000 0.00 0.00 38.64 2.52
174 175 6.051179 ACCATAGTAGTTGGGAAGAGAAAC 57.949 41.667 0.00 0.00 38.64 2.78
175 176 5.546499 ACCATAGTAGTTGGGAAGAGAAACA 59.454 40.000 0.00 0.00 38.64 2.83
176 177 6.043938 ACCATAGTAGTTGGGAAGAGAAACAA 59.956 38.462 0.00 0.00 38.64 2.83
177 178 6.940298 CCATAGTAGTTGGGAAGAGAAACAAA 59.060 38.462 0.00 0.00 0.00 2.83
178 179 7.447238 CCATAGTAGTTGGGAAGAGAAACAAAA 59.553 37.037 0.00 0.00 0.00 2.44
179 180 8.846211 CATAGTAGTTGGGAAGAGAAACAAAAA 58.154 33.333 0.00 0.00 0.00 1.94
180 181 7.096884 AGTAGTTGGGAAGAGAAACAAAAAC 57.903 36.000 0.00 0.00 0.00 2.43
181 182 5.339008 AGTTGGGAAGAGAAACAAAAACC 57.661 39.130 0.00 0.00 0.00 3.27
182 183 4.775253 AGTTGGGAAGAGAAACAAAAACCA 59.225 37.500 0.00 0.00 0.00 3.67
183 184 5.247337 AGTTGGGAAGAGAAACAAAAACCAA 59.753 36.000 0.00 0.00 33.48 3.67
184 185 5.337578 TGGGAAGAGAAACAAAAACCAAG 57.662 39.130 0.00 0.00 0.00 3.61
185 186 5.020132 TGGGAAGAGAAACAAAAACCAAGA 58.980 37.500 0.00 0.00 0.00 3.02
186 187 5.660864 TGGGAAGAGAAACAAAAACCAAGAT 59.339 36.000 0.00 0.00 0.00 2.40
187 188 6.183360 TGGGAAGAGAAACAAAAACCAAGATC 60.183 38.462 0.00 0.00 0.00 2.75
188 189 5.915196 GGAAGAGAAACAAAAACCAAGATCG 59.085 40.000 0.00 0.00 0.00 3.69
189 190 6.238648 GGAAGAGAAACAAAAACCAAGATCGA 60.239 38.462 0.00 0.00 0.00 3.59
190 191 6.884280 AGAGAAACAAAAACCAAGATCGAT 57.116 33.333 0.00 0.00 0.00 3.59
191 192 7.277174 AGAGAAACAAAAACCAAGATCGATT 57.723 32.000 0.00 0.00 0.00 3.34
192 193 7.716612 AGAGAAACAAAAACCAAGATCGATTT 58.283 30.769 0.00 0.00 0.00 2.17
193 194 8.197439 AGAGAAACAAAAACCAAGATCGATTTT 58.803 29.630 0.00 0.00 0.00 1.82
194 195 8.130307 AGAAACAAAAACCAAGATCGATTTTG 57.870 30.769 19.09 19.09 43.23 2.44
195 196 7.978975 AGAAACAAAAACCAAGATCGATTTTGA 59.021 29.630 25.64 0.00 41.26 2.69
196 197 7.698836 AACAAAAACCAAGATCGATTTTGAG 57.301 32.000 25.64 18.38 41.26 3.02
197 198 6.805713 ACAAAAACCAAGATCGATTTTGAGT 58.194 32.000 25.64 18.91 41.26 3.41
198 199 7.264947 ACAAAAACCAAGATCGATTTTGAGTT 58.735 30.769 25.64 22.41 41.26 3.01
199 200 7.222611 ACAAAAACCAAGATCGATTTTGAGTTG 59.777 33.333 25.64 22.05 41.26 3.16
200 201 6.633500 AAACCAAGATCGATTTTGAGTTGA 57.367 33.333 25.64 0.00 0.00 3.18
201 202 6.633500 AACCAAGATCGATTTTGAGTTGAA 57.367 33.333 25.64 0.00 0.00 2.69
202 203 6.246420 ACCAAGATCGATTTTGAGTTGAAG 57.754 37.500 25.64 12.13 0.00 3.02
203 204 5.765182 ACCAAGATCGATTTTGAGTTGAAGT 59.235 36.000 25.64 12.67 0.00 3.01
204 205 6.073003 ACCAAGATCGATTTTGAGTTGAAGTC 60.073 38.462 25.64 0.00 0.00 3.01
205 206 6.073058 CCAAGATCGATTTTGAGTTGAAGTCA 60.073 38.462 25.64 0.00 0.00 3.41
206 207 6.473397 AGATCGATTTTGAGTTGAAGTCAC 57.527 37.500 1.48 0.00 0.00 3.67
207 208 5.991606 AGATCGATTTTGAGTTGAAGTCACA 59.008 36.000 1.48 0.00 0.00 3.58
208 209 6.483307 AGATCGATTTTGAGTTGAAGTCACAA 59.517 34.615 1.48 3.06 0.00 3.33
209 210 6.618287 TCGATTTTGAGTTGAAGTCACAAT 57.382 33.333 12.72 12.72 32.38 2.71
210 211 7.026631 TCGATTTTGAGTTGAAGTCACAATT 57.973 32.000 13.73 4.73 30.51 2.32
211 212 7.479980 TCGATTTTGAGTTGAAGTCACAATTT 58.520 30.769 13.73 0.00 30.51 1.82
212 213 7.973388 TCGATTTTGAGTTGAAGTCACAATTTT 59.027 29.630 13.73 0.00 30.51 1.82
213 214 8.051909 CGATTTTGAGTTGAAGTCACAATTTTG 58.948 33.333 13.73 5.89 30.51 2.44
214 215 8.776376 ATTTTGAGTTGAAGTCACAATTTTGT 57.224 26.923 8.23 0.00 43.36 2.83
231 232 9.336171 ACAATTTTGTGTTTGTTATTTATGCCT 57.664 25.926 0.00 0.00 40.49 4.75
234 235 9.777297 ATTTTGTGTTTGTTATTTATGCCTTCT 57.223 25.926 0.00 0.00 0.00 2.85
235 236 8.586570 TTTGTGTTTGTTATTTATGCCTTCTG 57.413 30.769 0.00 0.00 0.00 3.02
236 237 6.155827 TGTGTTTGTTATTTATGCCTTCTGC 58.844 36.000 0.00 0.00 41.77 4.26
261 262 6.530019 AAAAAGTTGGTCTCACATGAAAGT 57.470 33.333 0.00 0.00 0.00 2.66
262 263 7.639113 AAAAAGTTGGTCTCACATGAAAGTA 57.361 32.000 0.00 0.00 0.00 2.24
263 264 6.867662 AAAGTTGGTCTCACATGAAAGTAG 57.132 37.500 0.00 0.00 0.00 2.57
264 265 5.552870 AGTTGGTCTCACATGAAAGTAGT 57.447 39.130 0.00 0.00 0.00 2.73
265 266 5.300752 AGTTGGTCTCACATGAAAGTAGTG 58.699 41.667 0.00 0.00 34.67 2.74
266 267 4.955811 TGGTCTCACATGAAAGTAGTGT 57.044 40.909 0.00 0.00 34.94 3.55
267 268 6.041637 AGTTGGTCTCACATGAAAGTAGTGTA 59.958 38.462 0.00 0.00 34.94 2.90
268 269 6.605471 TGGTCTCACATGAAAGTAGTGTAT 57.395 37.500 0.00 0.00 34.94 2.29
269 270 6.631016 TGGTCTCACATGAAAGTAGTGTATC 58.369 40.000 0.00 0.00 34.94 2.24
270 271 6.437477 TGGTCTCACATGAAAGTAGTGTATCT 59.563 38.462 0.00 0.00 34.94 1.98
271 272 7.614192 TGGTCTCACATGAAAGTAGTGTATCTA 59.386 37.037 0.00 0.00 34.94 1.98
272 273 8.634444 GGTCTCACATGAAAGTAGTGTATCTAT 58.366 37.037 0.00 0.00 34.94 1.98
300 301 8.859236 ATTTAATGATAGATCCCACATGTCAG 57.141 34.615 0.00 0.00 0.00 3.51
301 302 5.901413 AATGATAGATCCCACATGTCAGT 57.099 39.130 0.00 0.00 0.00 3.41
302 303 8.491045 TTAATGATAGATCCCACATGTCAGTA 57.509 34.615 0.00 0.00 0.00 2.74
303 304 7.379059 AATGATAGATCCCACATGTCAGTAA 57.621 36.000 0.00 0.00 0.00 2.24
304 305 6.806668 TGATAGATCCCACATGTCAGTAAA 57.193 37.500 0.00 0.00 0.00 2.01
305 306 6.820335 TGATAGATCCCACATGTCAGTAAAG 58.180 40.000 0.00 0.00 0.00 1.85
306 307 6.384015 TGATAGATCCCACATGTCAGTAAAGT 59.616 38.462 0.00 0.00 0.00 2.66
307 308 7.563556 TGATAGATCCCACATGTCAGTAAAGTA 59.436 37.037 0.00 0.00 0.00 2.24
308 309 6.814954 AGATCCCACATGTCAGTAAAGTAT 57.185 37.500 0.00 0.00 0.00 2.12
309 310 7.914427 AGATCCCACATGTCAGTAAAGTATA 57.086 36.000 0.00 0.00 0.00 1.47
310 311 8.497910 AGATCCCACATGTCAGTAAAGTATAT 57.502 34.615 0.00 0.00 0.00 0.86
311 312 8.938883 AGATCCCACATGTCAGTAAAGTATATT 58.061 33.333 0.00 0.00 0.00 1.28
312 313 9.561069 GATCCCACATGTCAGTAAAGTATATTT 57.439 33.333 0.00 0.00 0.00 1.40
313 314 8.731275 TCCCACATGTCAGTAAAGTATATTTG 57.269 34.615 0.00 0.00 0.00 2.32
314 315 8.325787 TCCCACATGTCAGTAAAGTATATTTGT 58.674 33.333 0.00 0.00 0.00 2.83
315 316 8.956426 CCCACATGTCAGTAAAGTATATTTGTT 58.044 33.333 0.00 0.00 0.00 2.83
344 345 6.981722 TCTCTTTTGGAAAATTGCTAGTTCC 58.018 36.000 6.49 6.49 41.09 3.62
349 350 5.389859 TGGAAAATTGCTAGTTCCACATG 57.610 39.130 10.67 0.00 44.57 3.21
350 351 4.176271 GGAAAATTGCTAGTTCCACATGC 58.824 43.478 8.06 0.00 40.53 4.06
351 352 3.492421 AAATTGCTAGTTCCACATGCG 57.508 42.857 0.00 0.00 0.00 4.73
352 353 1.382522 ATTGCTAGTTCCACATGCGG 58.617 50.000 0.00 0.00 0.00 5.69
353 354 0.676466 TTGCTAGTTCCACATGCGGG 60.676 55.000 0.00 0.00 0.00 6.13
354 355 1.819632 GCTAGTTCCACATGCGGGG 60.820 63.158 0.00 0.00 0.00 5.73
355 356 1.904771 CTAGTTCCACATGCGGGGA 59.095 57.895 0.00 0.00 0.00 4.81
356 357 0.469917 CTAGTTCCACATGCGGGGAT 59.530 55.000 0.00 0.00 32.15 3.85
357 358 0.180171 TAGTTCCACATGCGGGGATG 59.820 55.000 0.00 0.00 32.15 3.51
358 359 2.440065 TTCCACATGCGGGGATGC 60.440 61.111 0.00 0.00 32.15 3.91
359 360 2.982643 TTCCACATGCGGGGATGCT 61.983 57.895 0.00 0.00 35.36 3.79
360 361 2.891941 TTCCACATGCGGGGATGCTC 62.892 60.000 0.00 0.00 35.36 4.26
361 362 3.274586 CACATGCGGGGATGCTCG 61.275 66.667 0.35 0.35 35.36 5.03
362 363 3.785859 ACATGCGGGGATGCTCGT 61.786 61.111 8.73 0.00 35.36 4.18
363 364 2.421314 CATGCGGGGATGCTCGTA 59.579 61.111 8.73 3.31 35.36 3.43
364 365 1.004560 CATGCGGGGATGCTCGTAT 60.005 57.895 8.73 6.25 35.36 3.06
365 366 0.603707 CATGCGGGGATGCTCGTATT 60.604 55.000 7.47 0.00 35.36 1.89
366 367 0.108585 ATGCGGGGATGCTCGTATTT 59.891 50.000 8.73 0.00 35.36 1.40
367 368 0.813610 TGCGGGGATGCTCGTATTTG 60.814 55.000 8.73 0.00 35.36 2.32
368 369 0.814010 GCGGGGATGCTCGTATTTGT 60.814 55.000 8.73 0.00 0.00 2.83
369 370 1.663695 CGGGGATGCTCGTATTTGTT 58.336 50.000 0.00 0.00 0.00 2.83
370 371 2.014128 CGGGGATGCTCGTATTTGTTT 58.986 47.619 0.00 0.00 0.00 2.83
371 372 3.199677 CGGGGATGCTCGTATTTGTTTA 58.800 45.455 0.00 0.00 0.00 2.01
372 373 3.813166 CGGGGATGCTCGTATTTGTTTAT 59.187 43.478 0.00 0.00 0.00 1.40
373 374 4.274950 CGGGGATGCTCGTATTTGTTTATT 59.725 41.667 0.00 0.00 0.00 1.40
374 375 5.220970 CGGGGATGCTCGTATTTGTTTATTT 60.221 40.000 0.00 0.00 0.00 1.40
375 376 5.977129 GGGGATGCTCGTATTTGTTTATTTG 59.023 40.000 0.00 0.00 0.00 2.32
376 377 5.977129 GGGATGCTCGTATTTGTTTATTTGG 59.023 40.000 0.00 0.00 0.00 3.28
377 378 6.183360 GGGATGCTCGTATTTGTTTATTTGGA 60.183 38.462 0.00 0.00 0.00 3.53
378 379 7.254852 GGATGCTCGTATTTGTTTATTTGGAA 58.745 34.615 0.00 0.00 0.00 3.53
379 380 7.757624 GGATGCTCGTATTTGTTTATTTGGAAA 59.242 33.333 0.00 0.00 0.00 3.13
380 381 9.134734 GATGCTCGTATTTGTTTATTTGGAAAA 57.865 29.630 0.00 0.00 0.00 2.29
381 382 8.873215 TGCTCGTATTTGTTTATTTGGAAAAA 57.127 26.923 0.00 0.00 0.00 1.94
402 403 7.961325 AAAAATATTGAACCCACATGTGAAC 57.039 32.000 27.46 14.36 0.00 3.18
403 404 6.916360 AAATATTGAACCCACATGTGAACT 57.084 33.333 27.46 10.17 0.00 3.01
404 405 6.515272 AATATTGAACCCACATGTGAACTC 57.485 37.500 27.46 18.18 0.00 3.01
405 406 3.289407 TTGAACCCACATGTGAACTCA 57.711 42.857 27.46 20.32 0.00 3.41
406 407 3.507162 TGAACCCACATGTGAACTCAT 57.493 42.857 27.46 6.81 0.00 2.90
407 408 3.411446 TGAACCCACATGTGAACTCATC 58.589 45.455 27.46 15.07 0.00 2.92
408 409 3.181446 TGAACCCACATGTGAACTCATCA 60.181 43.478 27.46 17.18 35.05 3.07
409 410 3.726557 ACCCACATGTGAACTCATCAT 57.273 42.857 27.46 0.00 40.97 2.45
410 411 3.614092 ACCCACATGTGAACTCATCATC 58.386 45.455 27.46 0.00 40.97 2.92
411 412 3.009363 ACCCACATGTGAACTCATCATCA 59.991 43.478 27.46 0.00 40.97 3.07
412 413 4.011698 CCCACATGTGAACTCATCATCAA 58.988 43.478 27.46 0.00 40.97 2.57
413 414 4.142534 CCCACATGTGAACTCATCATCAAC 60.143 45.833 27.46 0.00 40.97 3.18
414 415 4.698780 CCACATGTGAACTCATCATCAACT 59.301 41.667 27.46 0.00 40.97 3.16
415 416 5.163784 CCACATGTGAACTCATCATCAACTC 60.164 44.000 27.46 0.00 40.97 3.01
416 417 4.940046 ACATGTGAACTCATCATCAACTCC 59.060 41.667 0.00 0.00 40.97 3.85
417 418 4.622260 TGTGAACTCATCATCAACTCCA 57.378 40.909 0.00 0.00 40.97 3.86
418 419 4.971939 TGTGAACTCATCATCAACTCCAA 58.028 39.130 0.00 0.00 40.97 3.53
419 420 5.563592 TGTGAACTCATCATCAACTCCAAT 58.436 37.500 0.00 0.00 40.97 3.16
420 421 5.645067 TGTGAACTCATCATCAACTCCAATC 59.355 40.000 0.00 0.00 40.97 2.67
421 422 5.879223 GTGAACTCATCATCAACTCCAATCT 59.121 40.000 0.00 0.00 40.97 2.40
422 423 6.373774 GTGAACTCATCATCAACTCCAATCTT 59.626 38.462 0.00 0.00 40.97 2.40
423 424 6.944290 TGAACTCATCATCAACTCCAATCTTT 59.056 34.615 0.00 0.00 31.50 2.52
424 425 8.102676 TGAACTCATCATCAACTCCAATCTTTA 58.897 33.333 0.00 0.00 31.50 1.85
425 426 9.118300 GAACTCATCATCAACTCCAATCTTTAT 57.882 33.333 0.00 0.00 0.00 1.40
449 450 8.819643 ATAAGTAAGAAAGATTACGGAGATGC 57.180 34.615 0.00 0.00 40.00 3.91
450 451 5.602628 AGTAAGAAAGATTACGGAGATGCC 58.397 41.667 0.00 0.00 40.00 4.40
451 452 4.487714 AAGAAAGATTACGGAGATGCCA 57.512 40.909 0.00 0.00 35.94 4.92
452 453 3.798202 AGAAAGATTACGGAGATGCCAC 58.202 45.455 0.00 0.00 35.94 5.01
453 454 3.452627 AGAAAGATTACGGAGATGCCACT 59.547 43.478 0.00 0.00 35.94 4.00
454 455 3.460857 AAGATTACGGAGATGCCACTC 57.539 47.619 0.00 0.00 35.94 3.51
455 456 2.388735 AGATTACGGAGATGCCACTCA 58.611 47.619 8.98 0.00 38.51 3.41
456 457 2.968574 AGATTACGGAGATGCCACTCAT 59.031 45.455 8.98 0.79 38.51 2.90
457 458 2.602257 TTACGGAGATGCCACTCATG 57.398 50.000 8.98 0.00 38.51 3.07
476 477 8.356657 CACTCATGGTTTACTTTTCATGGTTTA 58.643 33.333 0.00 0.00 37.97 2.01
479 480 9.083422 TCATGGTTTACTTTTCATGGTTTATCA 57.917 29.630 0.00 0.00 37.97 2.15
495 496 7.685481 TGGTTTATCATTGGACTTGTTCTAGA 58.315 34.615 0.00 0.00 0.00 2.43
498 499 8.443937 GTTTATCATTGGACTTGTTCTAGACAC 58.556 37.037 0.00 0.00 38.18 3.67
500 501 5.784177 TCATTGGACTTGTTCTAGACACTC 58.216 41.667 0.00 0.00 38.18 3.51
504 505 3.755378 GGACTTGTTCTAGACACTCGGTA 59.245 47.826 0.00 0.00 38.18 4.02
510 511 4.763279 TGTTCTAGACACTCGGTATTGTCA 59.237 41.667 0.00 0.00 43.94 3.58
511 512 5.242171 TGTTCTAGACACTCGGTATTGTCAA 59.758 40.000 0.00 0.00 43.94 3.18
513 514 5.891451 TCTAGACACTCGGTATTGTCAATG 58.109 41.667 8.39 0.00 43.94 2.82
519 520 4.564372 CACTCGGTATTGTCAATGTCTCAG 59.436 45.833 8.39 1.07 0.00 3.35
521 522 5.417894 ACTCGGTATTGTCAATGTCTCAGTA 59.582 40.000 8.39 0.00 0.00 2.74
524 525 7.156000 TCGGTATTGTCAATGTCTCAGTAAAA 58.844 34.615 8.39 0.00 0.00 1.52
528 529 9.559958 GTATTGTCAATGTCTCAGTAAAATTGG 57.440 33.333 8.39 0.00 0.00 3.16
529 530 7.581213 TTGTCAATGTCTCAGTAAAATTGGT 57.419 32.000 0.00 0.00 0.00 3.67
530 531 6.969366 TGTCAATGTCTCAGTAAAATTGGTG 58.031 36.000 0.00 0.00 0.00 4.17
531 532 6.770303 TGTCAATGTCTCAGTAAAATTGGTGA 59.230 34.615 0.00 0.00 0.00 4.02
532 533 7.078228 GTCAATGTCTCAGTAAAATTGGTGAC 58.922 38.462 0.00 0.00 0.00 3.67
534 535 6.808008 ATGTCTCAGTAAAATTGGTGACAG 57.192 37.500 0.00 0.00 44.54 3.51
535 536 4.515191 TGTCTCAGTAAAATTGGTGACAGC 59.485 41.667 0.00 0.00 44.54 4.40
536 537 4.757149 GTCTCAGTAAAATTGGTGACAGCT 59.243 41.667 6.17 0.00 44.54 4.24
544 547 5.886960 AAATTGGTGACAGCTTCTCATAC 57.113 39.130 6.17 0.00 44.54 2.39
560 563 7.148722 GCTTCTCATACCAATAAATCGAGCTAC 60.149 40.741 0.00 0.00 0.00 3.58
565 568 5.211174 ACCAATAAATCGAGCTACCCTAC 57.789 43.478 0.00 0.00 0.00 3.18
572 575 6.496144 AAATCGAGCTACCCTACCTAAAAT 57.504 37.500 0.00 0.00 0.00 1.82
581 584 7.899172 AGCTACCCTACCTAAAATTTCCAATTT 59.101 33.333 0.00 0.00 0.00 1.82
582 585 8.195436 GCTACCCTACCTAAAATTTCCAATTTC 58.805 37.037 0.00 0.00 0.00 2.17
583 586 9.250246 CTACCCTACCTAAAATTTCCAATTTCA 57.750 33.333 0.00 0.00 0.00 2.69
585 588 7.733047 ACCCTACCTAAAATTTCCAATTTCACT 59.267 33.333 0.00 0.00 0.00 3.41
590 593 9.898152 ACCTAAAATTTCCAATTTCACTCAAAA 57.102 25.926 0.00 0.00 0.00 2.44
609 612 9.994432 ACTCAAAATTATATCTTTCTTCAAGCG 57.006 29.630 0.00 0.00 31.70 4.68
616 619 6.992063 ATATCTTTCTTCAAGCGTTCACAT 57.008 33.333 0.00 0.00 31.70 3.21
649 652 2.023223 GCAGCCGCACCAATTTGTG 61.023 57.895 5.31 5.31 38.36 3.33
686 689 3.480470 ACATGATTACATAGGCAGCCAC 58.520 45.455 15.80 0.00 35.09 5.01
687 690 3.137176 ACATGATTACATAGGCAGCCACT 59.863 43.478 15.80 0.00 35.09 4.00
688 691 3.198409 TGATTACATAGGCAGCCACTG 57.802 47.619 15.80 12.90 34.12 3.66
689 692 4.058655 ATGATTACATAGGCAGCCACTGC 61.059 47.826 15.80 11.09 44.39 4.40
690 693 6.511855 ATGATTACATAGGCAGCCACTGCA 62.512 45.833 20.19 4.19 45.62 4.41
701 706 1.064621 CCACTGCACACACACTTGC 59.935 57.895 0.00 0.00 39.33 4.01
715 720 5.234757 CACACACTTGCAACAATTTTGCTAT 59.765 36.000 19.20 7.99 45.13 2.97
716 721 5.234757 ACACACTTGCAACAATTTTGCTATG 59.765 36.000 19.20 16.61 45.13 2.23
757 765 2.932614 ACGTATGCTGCAGCTCTTAAAG 59.067 45.455 36.61 22.67 42.66 1.85
758 766 2.932614 CGTATGCTGCAGCTCTTAAAGT 59.067 45.455 36.61 15.58 42.66 2.66
764 776 4.813161 TGCTGCAGCTCTTAAAGTCATATC 59.187 41.667 36.61 4.71 42.66 1.63
797 809 4.927425 GTGAGCTGTTCATGCAATTGATTT 59.073 37.500 10.34 0.00 38.29 2.17
828 840 3.751175 TGGAAAATTCGTAGAAGCTGTGG 59.249 43.478 0.00 0.00 45.90 4.17
961 982 4.744259 GCTGCTAGCTACTACTCCTCTGTA 60.744 50.000 17.23 0.00 38.45 2.74
987 1008 1.681538 TCATCCTCCTCTGCTACGTC 58.318 55.000 0.00 0.00 0.00 4.34
988 1009 1.064685 TCATCCTCCTCTGCTACGTCA 60.065 52.381 0.00 0.00 0.00 4.35
993 1014 0.520404 TCCTCTGCTACGTCAACGAC 59.480 55.000 9.88 0.00 43.02 4.34
1532 1562 1.315690 AGTAGCACATGCATGATGCC 58.684 50.000 32.20 23.88 44.23 4.40
1574 1604 4.506288 GCTGTACGAACACATGTATGCATA 59.494 41.667 1.16 1.16 33.30 3.14
1575 1605 5.177511 GCTGTACGAACACATGTATGCATAT 59.822 40.000 10.16 0.00 33.30 1.78
1653 1696 9.920946 ATGTATGGATCTTATGGTTGTAAGTTT 57.079 29.630 0.00 0.00 34.16 2.66
1671 1714 4.142038 AGTTTTAACAGCGGAAAGTGGAT 58.858 39.130 0.00 0.00 0.00 3.41
1692 1735 5.067023 GGATTAAATCTCAGAAGTTGGCAGG 59.933 44.000 0.00 0.00 0.00 4.85
1734 1782 4.393062 GCAGCTGAAACAATGCTAGTAGAA 59.607 41.667 20.43 0.00 35.05 2.10
1752 1800 9.765795 CTAGTAGAATTTGGGAGTTGTATTAGG 57.234 37.037 0.00 0.00 0.00 2.69
1753 1801 7.054751 AGTAGAATTTGGGAGTTGTATTAGGC 58.945 38.462 0.00 0.00 0.00 3.93
1754 1802 5.201243 AGAATTTGGGAGTTGTATTAGGCC 58.799 41.667 0.00 0.00 0.00 5.19
1755 1803 4.601406 ATTTGGGAGTTGTATTAGGCCA 57.399 40.909 5.01 0.00 0.00 5.36
1756 1804 4.601406 TTTGGGAGTTGTATTAGGCCAT 57.399 40.909 5.01 0.00 0.00 4.40
1757 1805 3.576078 TGGGAGTTGTATTAGGCCATG 57.424 47.619 5.01 0.00 0.00 3.66
1758 1806 2.849943 TGGGAGTTGTATTAGGCCATGT 59.150 45.455 5.01 0.00 0.00 3.21
1759 1807 4.041464 TGGGAGTTGTATTAGGCCATGTA 58.959 43.478 5.01 0.00 0.00 2.29
1760 1808 4.141574 TGGGAGTTGTATTAGGCCATGTAC 60.142 45.833 5.01 4.95 0.00 2.90
1761 1809 4.141574 GGGAGTTGTATTAGGCCATGTACA 60.142 45.833 5.01 7.80 0.00 2.90
1762 1810 4.814771 GGAGTTGTATTAGGCCATGTACAC 59.185 45.833 5.01 5.86 0.00 2.90
1763 1811 5.396436 GGAGTTGTATTAGGCCATGTACACT 60.396 44.000 5.01 10.08 0.00 3.55
1764 1812 5.428253 AGTTGTATTAGGCCATGTACACTG 58.572 41.667 5.01 0.00 0.00 3.66
1765 1813 3.804036 TGTATTAGGCCATGTACACTGC 58.196 45.455 5.01 3.51 0.00 4.40
1766 1814 3.198853 TGTATTAGGCCATGTACACTGCA 59.801 43.478 17.40 0.00 0.00 4.41
1767 1815 2.869101 TTAGGCCATGTACACTGCAA 57.131 45.000 17.40 4.52 0.00 4.08
1768 1816 2.401583 TAGGCCATGTACACTGCAAG 57.598 50.000 17.40 0.00 42.29 4.01
1769 1817 0.322816 AGGCCATGTACACTGCAAGG 60.323 55.000 17.40 6.41 39.30 3.61
1770 1818 0.609131 GGCCATGTACACTGCAAGGT 60.609 55.000 17.40 0.00 39.30 3.50
1771 1819 0.523072 GCCATGTACACTGCAAGGTG 59.477 55.000 12.31 4.64 39.30 4.00
1772 1820 0.523072 CCATGTACACTGCAAGGTGC 59.477 55.000 0.00 2.64 45.29 5.01
1773 1821 1.527034 CATGTACACTGCAAGGTGCT 58.473 50.000 0.00 0.00 45.31 4.40
1774 1822 1.881973 CATGTACACTGCAAGGTGCTT 59.118 47.619 0.00 0.00 45.31 3.91
1775 1823 2.920724 TGTACACTGCAAGGTGCTTA 57.079 45.000 6.03 0.00 45.31 3.09
1776 1824 2.766313 TGTACACTGCAAGGTGCTTAG 58.234 47.619 6.03 0.00 45.31 2.18
1777 1825 2.367241 TGTACACTGCAAGGTGCTTAGA 59.633 45.455 6.03 0.00 45.31 2.10
1778 1826 2.638480 ACACTGCAAGGTGCTTAGAA 57.362 45.000 6.03 0.00 45.31 2.10
1779 1827 2.498167 ACACTGCAAGGTGCTTAGAAG 58.502 47.619 6.03 0.00 45.31 2.85
1780 1828 2.104792 ACACTGCAAGGTGCTTAGAAGA 59.895 45.455 6.03 0.00 45.31 2.87
1781 1829 2.740981 CACTGCAAGGTGCTTAGAAGAG 59.259 50.000 1.43 0.00 45.31 2.85
1782 1830 2.289945 ACTGCAAGGTGCTTAGAAGAGG 60.290 50.000 1.43 0.00 45.31 3.69
1783 1831 1.699634 TGCAAGGTGCTTAGAAGAGGT 59.300 47.619 1.43 0.00 45.31 3.85
1784 1832 2.079925 GCAAGGTGCTTAGAAGAGGTG 58.920 52.381 0.00 0.00 40.96 4.00
1785 1833 2.079925 CAAGGTGCTTAGAAGAGGTGC 58.920 52.381 0.00 0.00 0.00 5.01
1786 1834 1.650528 AGGTGCTTAGAAGAGGTGCT 58.349 50.000 0.00 0.00 0.00 4.40
1787 1835 1.981495 AGGTGCTTAGAAGAGGTGCTT 59.019 47.619 0.00 0.00 40.25 3.91
1788 1836 3.173965 AGGTGCTTAGAAGAGGTGCTTA 58.826 45.455 0.00 0.00 36.83 3.09
1789 1837 3.777522 AGGTGCTTAGAAGAGGTGCTTAT 59.222 43.478 0.00 0.00 36.83 1.73
1790 1838 4.962995 AGGTGCTTAGAAGAGGTGCTTATA 59.037 41.667 0.00 0.00 36.83 0.98
1791 1839 5.425539 AGGTGCTTAGAAGAGGTGCTTATAA 59.574 40.000 0.00 0.00 37.81 0.98
1792 1840 6.070194 AGGTGCTTAGAAGAGGTGCTTATAAA 60.070 38.462 0.00 0.00 39.16 1.40
1793 1841 6.258947 GGTGCTTAGAAGAGGTGCTTATAAAG 59.741 42.308 0.00 0.00 39.16 1.85
1794 1842 7.042335 GTGCTTAGAAGAGGTGCTTATAAAGA 58.958 38.462 0.00 0.00 39.16 2.52
1795 1843 7.713073 GTGCTTAGAAGAGGTGCTTATAAAGAT 59.287 37.037 0.00 0.00 39.16 2.40
1796 1844 8.924303 TGCTTAGAAGAGGTGCTTATAAAGATA 58.076 33.333 0.00 0.00 39.16 1.98
1797 1845 9.936759 GCTTAGAAGAGGTGCTTATAAAGATAT 57.063 33.333 0.00 0.00 39.16 1.63
1822 1870 9.956720 ATAAATCATGCTTTTCTTAAGAATCGG 57.043 29.630 18.37 12.06 33.54 4.18
1823 1871 7.396540 AATCATGCTTTTCTTAAGAATCGGT 57.603 32.000 18.37 2.39 33.54 4.69
1824 1872 6.182039 TCATGCTTTTCTTAAGAATCGGTG 57.818 37.500 18.37 13.17 33.54 4.94
1825 1873 4.419522 TGCTTTTCTTAAGAATCGGTGC 57.580 40.909 18.37 16.42 33.54 5.01
1826 1874 4.072131 TGCTTTTCTTAAGAATCGGTGCT 58.928 39.130 18.37 0.00 33.54 4.40
1827 1875 4.518970 TGCTTTTCTTAAGAATCGGTGCTT 59.481 37.500 18.37 0.00 33.54 3.91
1828 1876 5.703592 TGCTTTTCTTAAGAATCGGTGCTTA 59.296 36.000 18.37 0.00 33.54 3.09
1829 1877 6.205853 TGCTTTTCTTAAGAATCGGTGCTTAA 59.794 34.615 18.37 8.60 35.81 1.85
1830 1878 7.094377 TGCTTTTCTTAAGAATCGGTGCTTAAT 60.094 33.333 18.37 0.00 36.38 1.40
1831 1879 7.429630 GCTTTTCTTAAGAATCGGTGCTTAATC 59.570 37.037 18.37 0.00 36.38 1.75
1832 1880 6.583912 TTCTTAAGAATCGGTGCTTAATCG 57.416 37.500 13.99 0.00 36.38 3.34
1833 1881 5.657474 TCTTAAGAATCGGTGCTTAATCGT 58.343 37.500 9.36 0.00 36.38 3.73
1834 1882 6.798482 TCTTAAGAATCGGTGCTTAATCGTA 58.202 36.000 9.36 0.00 36.38 3.43
1835 1883 6.694411 TCTTAAGAATCGGTGCTTAATCGTAC 59.306 38.462 9.36 0.00 36.38 3.67
1836 1884 4.380841 AGAATCGGTGCTTAATCGTACA 57.619 40.909 0.00 0.00 32.76 2.90
1837 1885 4.360563 AGAATCGGTGCTTAATCGTACAG 58.639 43.478 0.00 0.00 32.76 2.74
1838 1886 1.917273 TCGGTGCTTAATCGTACAGC 58.083 50.000 0.00 0.00 32.76 4.40
1839 1887 0.570734 CGGTGCTTAATCGTACAGCG 59.429 55.000 0.00 0.00 45.76 5.18
1840 1888 1.636988 GGTGCTTAATCGTACAGCGT 58.363 50.000 0.00 0.00 42.13 5.07
1841 1889 2.792196 CGGTGCTTAATCGTACAGCGTA 60.792 50.000 5.38 0.00 45.85 4.42
1842 1890 2.787680 GGTGCTTAATCGTACAGCGTAG 59.212 50.000 0.00 0.00 42.13 3.51
1843 1891 2.787680 GTGCTTAATCGTACAGCGTAGG 59.212 50.000 0.00 3.17 42.13 3.18
1844 1892 2.424601 TGCTTAATCGTACAGCGTAGGT 59.575 45.455 0.00 0.00 42.13 3.08
1857 1905 4.730949 AGCGTAGGTGCTTAATTAGACA 57.269 40.909 0.00 0.00 44.46 3.41
1858 1906 4.430908 AGCGTAGGTGCTTAATTAGACAC 58.569 43.478 10.10 10.10 44.46 3.67
1859 1907 3.554731 GCGTAGGTGCTTAATTAGACACC 59.445 47.826 22.40 22.40 44.55 4.16
1864 1912 3.939592 GGTGCTTAATTAGACACCTCACC 59.060 47.826 22.52 12.80 42.69 4.02
1865 1913 4.323562 GGTGCTTAATTAGACACCTCACCT 60.324 45.833 22.52 0.00 42.69 4.00
1866 1914 4.631813 GTGCTTAATTAGACACCTCACCTG 59.368 45.833 8.15 0.00 0.00 4.00
1867 1915 4.286032 TGCTTAATTAGACACCTCACCTGT 59.714 41.667 0.00 0.00 0.00 4.00
1868 1916 5.482526 TGCTTAATTAGACACCTCACCTGTA 59.517 40.000 0.00 0.00 0.00 2.74
1869 1917 6.014070 TGCTTAATTAGACACCTCACCTGTAA 60.014 38.462 0.00 0.00 0.00 2.41
1870 1918 6.877322 GCTTAATTAGACACCTCACCTGTAAA 59.123 38.462 0.00 0.00 0.00 2.01
1871 1919 7.389607 GCTTAATTAGACACCTCACCTGTAAAA 59.610 37.037 0.00 0.00 0.00 1.52
1872 1920 9.280174 CTTAATTAGACACCTCACCTGTAAAAA 57.720 33.333 0.00 0.00 0.00 1.94
1873 1921 9.802039 TTAATTAGACACCTCACCTGTAAAAAT 57.198 29.630 0.00 0.00 0.00 1.82
1875 1923 9.449719 AATTAGACACCTCACCTGTAAAAATAG 57.550 33.333 0.00 0.00 0.00 1.73
1876 1924 5.805728 AGACACCTCACCTGTAAAAATAGG 58.194 41.667 0.00 0.00 40.01 2.57
1877 1925 4.332828 ACACCTCACCTGTAAAAATAGGC 58.667 43.478 0.00 0.00 37.61 3.93
1878 1926 4.202524 ACACCTCACCTGTAAAAATAGGCA 60.203 41.667 0.00 0.00 37.61 4.75
1879 1927 4.156008 CACCTCACCTGTAAAAATAGGCAC 59.844 45.833 0.00 0.00 37.61 5.01
1880 1928 3.694566 CCTCACCTGTAAAAATAGGCACC 59.305 47.826 0.00 0.00 37.61 5.01
1881 1929 3.340034 TCACCTGTAAAAATAGGCACCG 58.660 45.455 0.00 0.00 37.61 4.94
1882 1930 3.008157 TCACCTGTAAAAATAGGCACCGA 59.992 43.478 0.00 0.00 37.61 4.69
1883 1931 3.945285 CACCTGTAAAAATAGGCACCGAT 59.055 43.478 0.00 0.00 37.61 4.18
1884 1932 3.945285 ACCTGTAAAAATAGGCACCGATG 59.055 43.478 0.00 0.00 37.61 3.84
1898 1946 4.739046 CACCGATGCTTCAGAATAATCC 57.261 45.455 0.08 0.00 0.00 3.01
1899 1947 3.185188 CACCGATGCTTCAGAATAATCCG 59.815 47.826 0.08 0.00 0.00 4.18
1900 1948 2.158449 CCGATGCTTCAGAATAATCCGC 59.842 50.000 0.08 0.00 0.00 5.54
1901 1949 3.062763 CGATGCTTCAGAATAATCCGCT 58.937 45.455 0.08 0.00 0.00 5.52
1902 1950 3.496130 CGATGCTTCAGAATAATCCGCTT 59.504 43.478 0.08 0.00 0.00 4.68
1903 1951 4.024556 CGATGCTTCAGAATAATCCGCTTT 60.025 41.667 0.08 0.00 0.00 3.51
1904 1952 5.177511 CGATGCTTCAGAATAATCCGCTTTA 59.822 40.000 0.08 0.00 0.00 1.85
1905 1953 6.128445 CGATGCTTCAGAATAATCCGCTTTAT 60.128 38.462 0.08 0.00 0.00 1.40
1906 1954 6.942532 TGCTTCAGAATAATCCGCTTTATT 57.057 33.333 1.75 1.75 35.11 1.40
1907 1955 7.333528 TGCTTCAGAATAATCCGCTTTATTT 57.666 32.000 3.32 0.00 33.11 1.40
1908 1956 7.771183 TGCTTCAGAATAATCCGCTTTATTTT 58.229 30.769 3.32 0.00 33.11 1.82
1909 1957 8.250332 TGCTTCAGAATAATCCGCTTTATTTTT 58.750 29.630 3.32 0.00 33.11 1.94
1910 1958 8.746751 GCTTCAGAATAATCCGCTTTATTTTTC 58.253 33.333 3.32 0.00 33.11 2.29
1915 1963 9.952188 AGAATAATCCGCTTTATTTTTCTAAGC 57.048 29.630 0.00 0.00 40.58 3.09
1916 1964 9.730420 GAATAATCCGCTTTATTTTTCTAAGCA 57.270 29.630 0.00 0.00 43.34 3.91
1918 1966 9.899226 ATAATCCGCTTTATTTTTCTAAGCATC 57.101 29.630 0.00 0.00 43.34 3.91
1919 1967 7.573968 ATCCGCTTTATTTTTCTAAGCATCT 57.426 32.000 0.00 0.00 43.34 2.90
1920 1968 7.016361 TCCGCTTTATTTTTCTAAGCATCTC 57.984 36.000 0.00 0.00 43.34 2.75
1921 1969 6.038271 TCCGCTTTATTTTTCTAAGCATCTCC 59.962 38.462 0.00 0.00 43.34 3.71
1922 1970 6.202226 CGCTTTATTTTTCTAAGCATCTCCC 58.798 40.000 0.00 0.00 43.34 4.30
1923 1971 6.038714 CGCTTTATTTTTCTAAGCATCTCCCT 59.961 38.462 0.00 0.00 43.34 4.20
1924 1972 7.226720 CGCTTTATTTTTCTAAGCATCTCCCTA 59.773 37.037 0.00 0.00 43.34 3.53
1925 1973 8.563732 GCTTTATTTTTCTAAGCATCTCCCTAG 58.436 37.037 0.00 0.00 42.84 3.02
1926 1974 8.980481 TTTATTTTTCTAAGCATCTCCCTAGG 57.020 34.615 0.06 0.06 0.00 3.02
1927 1975 6.831664 ATTTTTCTAAGCATCTCCCTAGGA 57.168 37.500 11.48 0.00 0.00 2.94
1928 1976 6.636454 TTTTTCTAAGCATCTCCCTAGGAA 57.364 37.500 11.48 0.00 0.00 3.36
1929 1977 5.615925 TTTCTAAGCATCTCCCTAGGAAC 57.384 43.478 11.48 0.00 0.00 3.62
1930 1978 3.577919 TCTAAGCATCTCCCTAGGAACC 58.422 50.000 11.48 0.00 0.00 3.62
1931 1979 2.577772 AAGCATCTCCCTAGGAACCT 57.422 50.000 11.48 0.00 0.00 3.50
1932 1980 3.708236 AAGCATCTCCCTAGGAACCTA 57.292 47.619 11.48 0.50 0.00 3.08
1933 1981 3.252554 AGCATCTCCCTAGGAACCTAG 57.747 52.381 11.48 18.01 44.07 3.02
1945 1993 6.163135 CTAGGAACCTAGGATTGTACAAGG 57.837 45.833 17.98 11.43 41.58 3.61
1946 1994 3.200165 AGGAACCTAGGATTGTACAAGGC 59.800 47.826 17.98 8.42 0.00 4.35
1947 1995 3.542648 GAACCTAGGATTGTACAAGGCC 58.457 50.000 17.98 16.63 0.00 5.19
2002 2050 1.219664 CCCGCGTCTATTTGGGTCA 59.780 57.895 4.92 0.00 36.86 4.02
2062 2110 3.545124 AAATCGTGTCCGCCTGGCA 62.545 57.895 20.29 0.00 34.14 4.92
2299 2348 3.402681 CCCGTCCACATCTGGCCT 61.403 66.667 3.32 0.00 37.49 5.19
2328 2378 2.358737 CTTTGCTTCCTCGCCGGT 60.359 61.111 1.90 0.00 0.00 5.28
2366 2417 2.370445 CCCATGGGTCTCTTCGGCT 61.370 63.158 23.93 0.00 0.00 5.52
2368 2419 1.599047 CATGGGTCTCTTCGGCTGT 59.401 57.895 0.00 0.00 0.00 4.40
2423 2486 3.129502 CCTCGTCGTCCCGTGCTA 61.130 66.667 0.00 0.00 0.00 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 4.101790 GGCAACACACGGGCATCG 62.102 66.667 0.00 0.00 45.88 3.84
9 10 2.983030 TGGCAACACACGGGCATC 60.983 61.111 0.00 0.00 46.17 3.91
31 32 1.819632 CACCTCCTACGCCAATGGC 60.820 63.158 15.52 15.52 46.75 4.40
32 33 1.153168 CCACCTCCTACGCCAATGG 60.153 63.158 0.00 0.00 0.00 3.16
33 34 0.462047 GACCACCTCCTACGCCAATG 60.462 60.000 0.00 0.00 0.00 2.82
34 35 1.623542 GGACCACCTCCTACGCCAAT 61.624 60.000 0.00 0.00 35.89 3.16
35 36 2.288025 GGACCACCTCCTACGCCAA 61.288 63.158 0.00 0.00 35.89 4.52
36 37 2.682494 GGACCACCTCCTACGCCA 60.682 66.667 0.00 0.00 35.89 5.69
37 38 1.623542 ATTGGACCACCTCCTACGCC 61.624 60.000 0.00 0.00 40.26 5.68
38 39 1.117150 TATTGGACCACCTCCTACGC 58.883 55.000 0.00 0.00 40.26 4.42
39 40 2.480759 CGTTATTGGACCACCTCCTACG 60.481 54.545 0.00 0.00 40.26 3.51
40 41 2.498885 ACGTTATTGGACCACCTCCTAC 59.501 50.000 0.00 0.00 40.26 3.18
41 42 2.823959 ACGTTATTGGACCACCTCCTA 58.176 47.619 0.00 0.00 40.26 2.94
42 43 1.652947 ACGTTATTGGACCACCTCCT 58.347 50.000 0.00 0.00 40.26 3.69
43 44 2.484742 AACGTTATTGGACCACCTCC 57.515 50.000 0.00 0.00 39.97 4.30
44 45 3.930848 CACTAACGTTATTGGACCACCTC 59.069 47.826 15.75 0.00 37.04 3.85
45 46 3.325716 ACACTAACGTTATTGGACCACCT 59.674 43.478 24.20 4.30 37.04 4.00
46 47 3.667360 ACACTAACGTTATTGGACCACC 58.333 45.455 24.20 0.00 0.00 4.61
47 48 3.681417 GGACACTAACGTTATTGGACCAC 59.319 47.826 24.20 12.53 0.00 4.16
48 49 3.579586 AGGACACTAACGTTATTGGACCA 59.420 43.478 27.69 0.00 0.00 4.02
49 50 4.198028 AGGACACTAACGTTATTGGACC 57.802 45.455 24.20 23.64 0.00 4.46
50 51 4.992951 ACAAGGACACTAACGTTATTGGAC 59.007 41.667 24.20 17.45 0.00 4.02
51 52 4.992319 CACAAGGACACTAACGTTATTGGA 59.008 41.667 24.20 0.00 0.00 3.53
52 53 4.753107 ACACAAGGACACTAACGTTATTGG 59.247 41.667 24.20 13.00 0.00 3.16
53 54 5.107220 GGACACAAGGACACTAACGTTATTG 60.107 44.000 20.39 20.39 0.00 1.90
54 55 4.992951 GGACACAAGGACACTAACGTTATT 59.007 41.667 8.76 0.00 0.00 1.40
55 56 4.563061 GGACACAAGGACACTAACGTTAT 58.437 43.478 8.76 0.00 0.00 1.89
56 57 3.550639 CGGACACAAGGACACTAACGTTA 60.551 47.826 7.94 7.94 0.00 3.18
57 58 2.800629 CGGACACAAGGACACTAACGTT 60.801 50.000 5.88 5.88 0.00 3.99
58 59 1.269413 CGGACACAAGGACACTAACGT 60.269 52.381 0.00 0.00 0.00 3.99
59 60 1.415374 CGGACACAAGGACACTAACG 58.585 55.000 0.00 0.00 0.00 3.18
60 61 1.145803 GCGGACACAAGGACACTAAC 58.854 55.000 0.00 0.00 0.00 2.34
61 62 1.045407 AGCGGACACAAGGACACTAA 58.955 50.000 0.00 0.00 0.00 2.24
62 63 0.317160 CAGCGGACACAAGGACACTA 59.683 55.000 0.00 0.00 0.00 2.74
63 64 1.069765 CAGCGGACACAAGGACACT 59.930 57.895 0.00 0.00 0.00 3.55
64 65 2.607892 GCAGCGGACACAAGGACAC 61.608 63.158 0.00 0.00 0.00 3.67
65 66 2.280797 GCAGCGGACACAAGGACA 60.281 61.111 0.00 0.00 0.00 4.02
66 67 2.280797 TGCAGCGGACACAAGGAC 60.281 61.111 0.00 0.00 0.00 3.85
67 68 2.280797 GTGCAGCGGACACAAGGA 60.281 61.111 0.00 0.00 37.96 3.36
68 69 2.591429 TGTGCAGCGGACACAAGG 60.591 61.111 10.52 0.00 44.68 3.61
71 72 1.598882 TAAATTGTGCAGCGGACACA 58.401 45.000 9.28 9.28 45.90 3.72
72 73 2.161410 TCATAAATTGTGCAGCGGACAC 59.839 45.455 2.73 3.89 38.55 3.67
73 74 2.431454 TCATAAATTGTGCAGCGGACA 58.569 42.857 0.00 0.00 0.00 4.02
74 75 3.698029 ATCATAAATTGTGCAGCGGAC 57.302 42.857 0.00 0.00 0.00 4.79
75 76 4.881273 ACTAATCATAAATTGTGCAGCGGA 59.119 37.500 0.00 0.00 0.00 5.54
76 77 5.173774 ACTAATCATAAATTGTGCAGCGG 57.826 39.130 0.00 0.00 0.00 5.52
77 78 8.122330 TCTTTACTAATCATAAATTGTGCAGCG 58.878 33.333 0.00 0.00 0.00 5.18
78 79 9.956720 ATCTTTACTAATCATAAATTGTGCAGC 57.043 29.630 0.00 0.00 0.00 5.25
94 95 9.656040 TCACCGTATTTTTGCTATCTTTACTAA 57.344 29.630 0.00 0.00 0.00 2.24
95 96 9.309516 CTCACCGTATTTTTGCTATCTTTACTA 57.690 33.333 0.00 0.00 0.00 1.82
96 97 7.280205 CCTCACCGTATTTTTGCTATCTTTACT 59.720 37.037 0.00 0.00 0.00 2.24
97 98 7.407337 CCTCACCGTATTTTTGCTATCTTTAC 58.593 38.462 0.00 0.00 0.00 2.01
98 99 6.540914 CCCTCACCGTATTTTTGCTATCTTTA 59.459 38.462 0.00 0.00 0.00 1.85
99 100 5.357032 CCCTCACCGTATTTTTGCTATCTTT 59.643 40.000 0.00 0.00 0.00 2.52
100 101 4.881850 CCCTCACCGTATTTTTGCTATCTT 59.118 41.667 0.00 0.00 0.00 2.40
101 102 4.451900 CCCTCACCGTATTTTTGCTATCT 58.548 43.478 0.00 0.00 0.00 1.98
102 103 3.564225 CCCCTCACCGTATTTTTGCTATC 59.436 47.826 0.00 0.00 0.00 2.08
103 104 3.551846 CCCCTCACCGTATTTTTGCTAT 58.448 45.455 0.00 0.00 0.00 2.97
104 105 2.942306 GCCCCTCACCGTATTTTTGCTA 60.942 50.000 0.00 0.00 0.00 3.49
105 106 1.834188 CCCCTCACCGTATTTTTGCT 58.166 50.000 0.00 0.00 0.00 3.91
106 107 0.172578 GCCCCTCACCGTATTTTTGC 59.827 55.000 0.00 0.00 0.00 3.68
107 108 1.540267 TGCCCCTCACCGTATTTTTG 58.460 50.000 0.00 0.00 0.00 2.44
108 109 2.099405 CATGCCCCTCACCGTATTTTT 58.901 47.619 0.00 0.00 0.00 1.94
109 110 1.762708 CATGCCCCTCACCGTATTTT 58.237 50.000 0.00 0.00 0.00 1.82
110 111 0.751643 GCATGCCCCTCACCGTATTT 60.752 55.000 6.36 0.00 0.00 1.40
111 112 1.152963 GCATGCCCCTCACCGTATT 60.153 57.895 6.36 0.00 0.00 1.89
112 113 1.920734 TTGCATGCCCCTCACCGTAT 61.921 55.000 16.68 0.00 0.00 3.06
113 114 1.920734 ATTGCATGCCCCTCACCGTA 61.921 55.000 16.68 0.00 0.00 4.02
114 115 3.286694 ATTGCATGCCCCTCACCGT 62.287 57.895 16.68 0.00 0.00 4.83
115 116 2.440796 ATTGCATGCCCCTCACCG 60.441 61.111 16.68 0.00 0.00 4.94
116 117 3.213264 CATTGCATGCCCCTCACC 58.787 61.111 16.68 0.00 0.00 4.02
125 126 6.971527 TTTAAAATTCTCTGGCATTGCATG 57.028 33.333 11.39 2.42 0.00 4.06
126 127 7.279313 GTCATTTAAAATTCTCTGGCATTGCAT 59.721 33.333 11.39 0.00 0.00 3.96
127 128 6.591062 GTCATTTAAAATTCTCTGGCATTGCA 59.409 34.615 11.39 0.00 0.00 4.08
128 129 6.036408 GGTCATTTAAAATTCTCTGGCATTGC 59.964 38.462 0.00 0.00 0.00 3.56
129 130 7.098477 TGGTCATTTAAAATTCTCTGGCATTG 58.902 34.615 0.00 0.00 0.00 2.82
130 131 7.243604 TGGTCATTTAAAATTCTCTGGCATT 57.756 32.000 0.00 0.00 0.00 3.56
131 132 6.855763 TGGTCATTTAAAATTCTCTGGCAT 57.144 33.333 0.00 0.00 0.00 4.40
132 133 6.855763 ATGGTCATTTAAAATTCTCTGGCA 57.144 33.333 0.00 0.00 0.00 4.92
133 134 8.000780 ACTATGGTCATTTAAAATTCTCTGGC 57.999 34.615 0.00 0.00 0.00 4.85
140 141 9.762381 TCCCAACTACTATGGTCATTTAAAATT 57.238 29.630 0.00 0.00 36.14 1.82
141 142 9.762381 TTCCCAACTACTATGGTCATTTAAAAT 57.238 29.630 0.00 0.00 36.14 1.82
142 143 9.238368 CTTCCCAACTACTATGGTCATTTAAAA 57.762 33.333 0.00 0.00 36.14 1.52
143 144 8.607713 TCTTCCCAACTACTATGGTCATTTAAA 58.392 33.333 0.00 0.00 36.14 1.52
144 145 8.153221 TCTTCCCAACTACTATGGTCATTTAA 57.847 34.615 0.00 0.00 36.14 1.52
145 146 7.622081 TCTCTTCCCAACTACTATGGTCATTTA 59.378 37.037 0.00 0.00 36.14 1.40
146 147 6.443849 TCTCTTCCCAACTACTATGGTCATTT 59.556 38.462 0.00 0.00 36.14 2.32
147 148 5.964477 TCTCTTCCCAACTACTATGGTCATT 59.036 40.000 0.00 0.00 36.14 2.57
148 149 5.529289 TCTCTTCCCAACTACTATGGTCAT 58.471 41.667 0.00 0.00 36.14 3.06
149 150 4.942944 TCTCTTCCCAACTACTATGGTCA 58.057 43.478 0.00 0.00 36.14 4.02
150 151 5.934402 TTCTCTTCCCAACTACTATGGTC 57.066 43.478 0.00 0.00 36.14 4.02
151 152 5.546499 TGTTTCTCTTCCCAACTACTATGGT 59.454 40.000 0.00 0.00 36.14 3.55
152 153 6.049955 TGTTTCTCTTCCCAACTACTATGG 57.950 41.667 0.00 0.00 37.71 2.74
153 154 7.979444 TTTGTTTCTCTTCCCAACTACTATG 57.021 36.000 0.00 0.00 0.00 2.23
154 155 8.847196 GTTTTTGTTTCTCTTCCCAACTACTAT 58.153 33.333 0.00 0.00 0.00 2.12
155 156 7.283807 GGTTTTTGTTTCTCTTCCCAACTACTA 59.716 37.037 0.00 0.00 0.00 1.82
156 157 6.096423 GGTTTTTGTTTCTCTTCCCAACTACT 59.904 38.462 0.00 0.00 0.00 2.57
157 158 6.127563 TGGTTTTTGTTTCTCTTCCCAACTAC 60.128 38.462 0.00 0.00 0.00 2.73
158 159 5.952947 TGGTTTTTGTTTCTCTTCCCAACTA 59.047 36.000 0.00 0.00 0.00 2.24
159 160 4.775253 TGGTTTTTGTTTCTCTTCCCAACT 59.225 37.500 0.00 0.00 0.00 3.16
160 161 5.079689 TGGTTTTTGTTTCTCTTCCCAAC 57.920 39.130 0.00 0.00 0.00 3.77
161 162 5.482175 TCTTGGTTTTTGTTTCTCTTCCCAA 59.518 36.000 0.00 0.00 0.00 4.12
162 163 5.020132 TCTTGGTTTTTGTTTCTCTTCCCA 58.980 37.500 0.00 0.00 0.00 4.37
163 164 5.592104 TCTTGGTTTTTGTTTCTCTTCCC 57.408 39.130 0.00 0.00 0.00 3.97
164 165 5.915196 CGATCTTGGTTTTTGTTTCTCTTCC 59.085 40.000 0.00 0.00 0.00 3.46
165 166 6.725246 TCGATCTTGGTTTTTGTTTCTCTTC 58.275 36.000 0.00 0.00 0.00 2.87
166 167 6.693315 TCGATCTTGGTTTTTGTTTCTCTT 57.307 33.333 0.00 0.00 0.00 2.85
167 168 6.884280 ATCGATCTTGGTTTTTGTTTCTCT 57.116 33.333 0.00 0.00 0.00 3.10
168 169 7.930513 AAATCGATCTTGGTTTTTGTTTCTC 57.069 32.000 0.00 0.00 0.00 2.87
169 170 7.978975 TCAAAATCGATCTTGGTTTTTGTTTCT 59.021 29.630 11.42 0.00 38.07 2.52
170 171 8.125728 TCAAAATCGATCTTGGTTTTTGTTTC 57.874 30.769 11.42 0.00 38.07 2.78
171 172 7.763985 ACTCAAAATCGATCTTGGTTTTTGTTT 59.236 29.630 11.42 0.00 38.07 2.83
172 173 7.264947 ACTCAAAATCGATCTTGGTTTTTGTT 58.735 30.769 11.42 1.72 38.07 2.83
173 174 6.805713 ACTCAAAATCGATCTTGGTTTTTGT 58.194 32.000 11.42 1.65 38.07 2.83
174 175 7.434897 TCAACTCAAAATCGATCTTGGTTTTTG 59.565 33.333 11.42 10.87 38.17 2.44
175 176 7.488322 TCAACTCAAAATCGATCTTGGTTTTT 58.512 30.769 11.42 0.00 0.00 1.94
176 177 7.038154 TCAACTCAAAATCGATCTTGGTTTT 57.962 32.000 11.42 0.00 0.00 2.43
177 178 6.633500 TCAACTCAAAATCGATCTTGGTTT 57.367 33.333 11.42 2.70 0.00 3.27
178 179 6.263168 ACTTCAACTCAAAATCGATCTTGGTT 59.737 34.615 11.42 10.95 0.00 3.67
179 180 5.765182 ACTTCAACTCAAAATCGATCTTGGT 59.235 36.000 11.42 5.82 0.00 3.67
180 181 6.073058 TGACTTCAACTCAAAATCGATCTTGG 60.073 38.462 11.42 5.24 0.00 3.61
181 182 6.794158 GTGACTTCAACTCAAAATCGATCTTG 59.206 38.462 5.04 5.04 0.00 3.02
182 183 6.483307 TGTGACTTCAACTCAAAATCGATCTT 59.517 34.615 0.00 0.00 0.00 2.40
183 184 5.991606 TGTGACTTCAACTCAAAATCGATCT 59.008 36.000 0.00 0.00 0.00 2.75
184 185 6.228273 TGTGACTTCAACTCAAAATCGATC 57.772 37.500 0.00 0.00 0.00 3.69
185 186 6.618287 TTGTGACTTCAACTCAAAATCGAT 57.382 33.333 0.00 0.00 0.00 3.59
186 187 6.618287 ATTGTGACTTCAACTCAAAATCGA 57.382 33.333 0.00 0.00 0.00 3.59
187 188 7.684062 AAATTGTGACTTCAACTCAAAATCG 57.316 32.000 0.00 0.00 27.25 3.34
188 189 8.872845 ACAAAATTGTGACTTCAACTCAAAATC 58.127 29.630 1.62 0.00 40.49 2.17
189 190 8.776376 ACAAAATTGTGACTTCAACTCAAAAT 57.224 26.923 1.62 0.00 40.49 1.82
205 206 9.336171 AGGCATAAATAACAAACACAAAATTGT 57.664 25.926 0.00 0.00 43.36 2.71
208 209 9.777297 AGAAGGCATAAATAACAAACACAAAAT 57.223 25.926 0.00 0.00 0.00 1.82
209 210 9.039870 CAGAAGGCATAAATAACAAACACAAAA 57.960 29.630 0.00 0.00 0.00 2.44
210 211 7.170658 GCAGAAGGCATAAATAACAAACACAAA 59.829 33.333 0.00 0.00 43.97 2.83
211 212 6.644592 GCAGAAGGCATAAATAACAAACACAA 59.355 34.615 0.00 0.00 43.97 3.33
212 213 6.155827 GCAGAAGGCATAAATAACAAACACA 58.844 36.000 0.00 0.00 43.97 3.72
213 214 6.632171 GCAGAAGGCATAAATAACAAACAC 57.368 37.500 0.00 0.00 43.97 3.32
238 239 6.530019 ACTTTCATGTGAGACCAACTTTTT 57.470 33.333 5.34 0.00 0.00 1.94
239 240 6.828785 ACTACTTTCATGTGAGACCAACTTTT 59.171 34.615 5.34 0.00 0.00 2.27
240 241 6.260936 CACTACTTTCATGTGAGACCAACTTT 59.739 38.462 5.34 0.00 33.95 2.66
241 242 5.760253 CACTACTTTCATGTGAGACCAACTT 59.240 40.000 5.34 0.00 33.95 2.66
242 243 5.163301 ACACTACTTTCATGTGAGACCAACT 60.163 40.000 0.00 0.00 35.83 3.16
243 244 5.057149 ACACTACTTTCATGTGAGACCAAC 58.943 41.667 0.00 0.00 35.83 3.77
244 245 5.290493 ACACTACTTTCATGTGAGACCAA 57.710 39.130 0.00 0.00 35.83 3.67
245 246 4.955811 ACACTACTTTCATGTGAGACCA 57.044 40.909 0.00 0.00 35.83 4.02
246 247 6.868622 AGATACACTACTTTCATGTGAGACC 58.131 40.000 0.00 0.00 35.83 3.85
274 275 9.948964 CTGACATGTGGGATCTATCATTAAATA 57.051 33.333 1.15 0.00 0.00 1.40
275 276 8.443176 ACTGACATGTGGGATCTATCATTAAAT 58.557 33.333 1.15 0.00 0.00 1.40
276 277 7.805163 ACTGACATGTGGGATCTATCATTAAA 58.195 34.615 1.15 0.00 0.00 1.52
277 278 7.379059 ACTGACATGTGGGATCTATCATTAA 57.621 36.000 1.15 0.00 0.00 1.40
278 279 8.491045 TTACTGACATGTGGGATCTATCATTA 57.509 34.615 1.15 0.00 0.00 1.90
279 280 5.901413 ACTGACATGTGGGATCTATCATT 57.099 39.130 1.15 0.00 0.00 2.57
280 281 7.071698 ACTTTACTGACATGTGGGATCTATCAT 59.928 37.037 1.15 0.00 0.00 2.45
281 282 6.384015 ACTTTACTGACATGTGGGATCTATCA 59.616 38.462 1.15 0.00 0.00 2.15
282 283 6.821388 ACTTTACTGACATGTGGGATCTATC 58.179 40.000 1.15 0.00 0.00 2.08
283 284 6.814954 ACTTTACTGACATGTGGGATCTAT 57.185 37.500 1.15 0.00 0.00 1.98
284 285 7.914427 ATACTTTACTGACATGTGGGATCTA 57.086 36.000 1.15 0.00 0.00 1.98
285 286 6.814954 ATACTTTACTGACATGTGGGATCT 57.185 37.500 1.15 0.00 0.00 2.75
286 287 9.561069 AAATATACTTTACTGACATGTGGGATC 57.439 33.333 1.15 0.00 0.00 3.36
287 288 9.342308 CAAATATACTTTACTGACATGTGGGAT 57.658 33.333 1.15 0.00 0.00 3.85
288 289 8.325787 ACAAATATACTTTACTGACATGTGGGA 58.674 33.333 1.15 0.00 0.00 4.37
289 290 8.506168 ACAAATATACTTTACTGACATGTGGG 57.494 34.615 1.15 0.00 0.00 4.61
318 319 8.739972 GGAACTAGCAATTTTCCAAAAGAGATA 58.260 33.333 4.58 0.00 38.98 1.98
319 320 7.233348 TGGAACTAGCAATTTTCCAAAAGAGAT 59.767 33.333 8.84 0.00 44.65 2.75
320 321 6.549364 TGGAACTAGCAATTTTCCAAAAGAGA 59.451 34.615 8.84 0.00 44.65 3.10
321 322 6.748132 TGGAACTAGCAATTTTCCAAAAGAG 58.252 36.000 8.84 0.00 44.65 2.85
322 323 6.723298 TGGAACTAGCAATTTTCCAAAAGA 57.277 33.333 8.84 0.00 44.65 2.52
327 328 4.321899 GCATGTGGAACTAGCAATTTTCCA 60.322 41.667 7.49 7.49 45.27 3.53
328 329 4.176271 GCATGTGGAACTAGCAATTTTCC 58.824 43.478 2.77 2.77 39.51 3.13
329 330 3.853671 CGCATGTGGAACTAGCAATTTTC 59.146 43.478 0.00 0.00 37.20 2.29
330 331 3.367292 CCGCATGTGGAACTAGCAATTTT 60.367 43.478 21.19 0.00 37.20 1.82
331 332 2.164219 CCGCATGTGGAACTAGCAATTT 59.836 45.455 21.19 0.00 37.20 1.82
332 333 1.745087 CCGCATGTGGAACTAGCAATT 59.255 47.619 21.19 0.00 37.20 2.32
333 334 1.382522 CCGCATGTGGAACTAGCAAT 58.617 50.000 21.19 0.00 37.20 3.56
334 335 0.676466 CCCGCATGTGGAACTAGCAA 60.676 55.000 27.12 0.00 37.20 3.91
335 336 1.078497 CCCGCATGTGGAACTAGCA 60.078 57.895 27.12 0.00 37.20 3.49
336 337 1.819632 CCCCGCATGTGGAACTAGC 60.820 63.158 27.12 0.00 38.04 3.42
337 338 0.469917 ATCCCCGCATGTGGAACTAG 59.530 55.000 27.12 9.15 38.04 2.57
338 339 0.180171 CATCCCCGCATGTGGAACTA 59.820 55.000 27.12 8.91 38.04 2.24
339 340 1.077501 CATCCCCGCATGTGGAACT 60.078 57.895 27.12 7.23 38.04 3.01
340 341 2.774799 GCATCCCCGCATGTGGAAC 61.775 63.158 27.12 7.02 33.54 3.62
341 342 2.440065 GCATCCCCGCATGTGGAA 60.440 61.111 27.12 14.38 33.54 3.53
342 343 3.405093 GAGCATCCCCGCATGTGGA 62.405 63.158 27.12 14.45 34.54 4.02
343 344 2.903855 GAGCATCCCCGCATGTGG 60.904 66.667 18.88 18.88 0.00 4.17
344 345 2.642996 TACGAGCATCCCCGCATGTG 62.643 60.000 0.00 0.00 0.00 3.21
345 346 1.758440 ATACGAGCATCCCCGCATGT 61.758 55.000 0.00 0.00 0.00 3.21
346 347 0.603707 AATACGAGCATCCCCGCATG 60.604 55.000 0.00 0.00 0.00 4.06
347 348 0.108585 AAATACGAGCATCCCCGCAT 59.891 50.000 0.00 0.00 0.00 4.73
348 349 0.813610 CAAATACGAGCATCCCCGCA 60.814 55.000 0.00 0.00 0.00 5.69
349 350 0.814010 ACAAATACGAGCATCCCCGC 60.814 55.000 0.00 0.00 0.00 6.13
350 351 1.663695 AACAAATACGAGCATCCCCG 58.336 50.000 0.00 0.00 0.00 5.73
351 352 5.767816 AATAAACAAATACGAGCATCCCC 57.232 39.130 0.00 0.00 0.00 4.81
352 353 5.977129 CCAAATAAACAAATACGAGCATCCC 59.023 40.000 0.00 0.00 0.00 3.85
353 354 6.791303 TCCAAATAAACAAATACGAGCATCC 58.209 36.000 0.00 0.00 0.00 3.51
354 355 8.682128 TTTCCAAATAAACAAATACGAGCATC 57.318 30.769 0.00 0.00 0.00 3.91
355 356 9.482627 TTTTTCCAAATAAACAAATACGAGCAT 57.517 25.926 0.00 0.00 0.00 3.79
356 357 8.873215 TTTTTCCAAATAAACAAATACGAGCA 57.127 26.923 0.00 0.00 0.00 4.26
378 379 7.734942 AGTTCACATGTGGGTTCAATATTTTT 58.265 30.769 25.16 0.00 0.00 1.94
379 380 7.015098 TGAGTTCACATGTGGGTTCAATATTTT 59.985 33.333 25.16 0.00 0.00 1.82
380 381 6.493115 TGAGTTCACATGTGGGTTCAATATTT 59.507 34.615 25.16 0.72 0.00 1.40
381 382 6.009589 TGAGTTCACATGTGGGTTCAATATT 58.990 36.000 25.16 2.94 0.00 1.28
382 383 5.569355 TGAGTTCACATGTGGGTTCAATAT 58.431 37.500 25.16 5.48 0.00 1.28
383 384 4.979335 TGAGTTCACATGTGGGTTCAATA 58.021 39.130 25.16 0.44 0.00 1.90
384 385 3.831323 TGAGTTCACATGTGGGTTCAAT 58.169 40.909 25.16 4.50 0.00 2.57
385 386 3.289407 TGAGTTCACATGTGGGTTCAA 57.711 42.857 25.16 9.31 0.00 2.69
386 387 3.181446 TGATGAGTTCACATGTGGGTTCA 60.181 43.478 25.16 22.67 0.00 3.18
387 388 3.411446 TGATGAGTTCACATGTGGGTTC 58.589 45.455 25.16 18.47 0.00 3.62
388 389 3.507162 TGATGAGTTCACATGTGGGTT 57.493 42.857 25.16 10.89 0.00 4.11
389 390 3.009363 TGATGATGAGTTCACATGTGGGT 59.991 43.478 25.16 10.36 37.11 4.51
390 391 3.613030 TGATGATGAGTTCACATGTGGG 58.387 45.455 25.16 0.92 37.11 4.61
391 392 4.698780 AGTTGATGATGAGTTCACATGTGG 59.301 41.667 25.16 7.43 37.11 4.17
392 393 5.163784 GGAGTTGATGATGAGTTCACATGTG 60.164 44.000 20.18 20.18 37.11 3.21
393 394 4.940046 GGAGTTGATGATGAGTTCACATGT 59.060 41.667 0.00 0.00 37.11 3.21
394 395 4.939439 TGGAGTTGATGATGAGTTCACATG 59.061 41.667 0.00 0.00 37.11 3.21
395 396 5.169992 TGGAGTTGATGATGAGTTCACAT 57.830 39.130 0.00 0.00 37.11 3.21
396 397 4.622260 TGGAGTTGATGATGAGTTCACA 57.378 40.909 0.00 0.00 37.11 3.58
397 398 5.879223 AGATTGGAGTTGATGATGAGTTCAC 59.121 40.000 0.00 0.00 37.11 3.18
398 399 6.058553 AGATTGGAGTTGATGATGAGTTCA 57.941 37.500 0.00 0.00 39.12 3.18
399 400 6.998968 AAGATTGGAGTTGATGATGAGTTC 57.001 37.500 0.00 0.00 0.00 3.01
423 424 9.909644 GCATCTCCGTAATCTTTCTTACTTATA 57.090 33.333 0.00 0.00 30.88 0.98
424 425 7.873505 GGCATCTCCGTAATCTTTCTTACTTAT 59.126 37.037 0.00 0.00 30.88 1.73
425 426 7.147794 TGGCATCTCCGTAATCTTTCTTACTTA 60.148 37.037 0.00 0.00 37.80 2.24
426 427 6.049790 GGCATCTCCGTAATCTTTCTTACTT 58.950 40.000 0.00 0.00 30.88 2.24
427 428 5.128827 TGGCATCTCCGTAATCTTTCTTACT 59.871 40.000 0.00 0.00 37.80 2.24
428 429 5.234543 GTGGCATCTCCGTAATCTTTCTTAC 59.765 44.000 0.00 0.00 37.80 2.34
429 430 5.128827 AGTGGCATCTCCGTAATCTTTCTTA 59.871 40.000 0.00 0.00 37.80 2.10
430 431 4.080863 AGTGGCATCTCCGTAATCTTTCTT 60.081 41.667 0.00 0.00 37.80 2.52
431 432 3.452627 AGTGGCATCTCCGTAATCTTTCT 59.547 43.478 0.00 0.00 37.80 2.52
432 433 3.798202 AGTGGCATCTCCGTAATCTTTC 58.202 45.455 0.00 0.00 37.80 2.62
433 434 3.197766 TGAGTGGCATCTCCGTAATCTTT 59.802 43.478 12.45 0.00 37.80 2.52
434 435 2.766263 TGAGTGGCATCTCCGTAATCTT 59.234 45.455 12.45 0.00 37.80 2.40
435 436 2.388735 TGAGTGGCATCTCCGTAATCT 58.611 47.619 12.45 0.00 37.80 2.40
436 437 2.890808 TGAGTGGCATCTCCGTAATC 57.109 50.000 12.45 0.00 37.80 1.75
437 438 2.224378 CCATGAGTGGCATCTCCGTAAT 60.224 50.000 12.45 0.45 39.01 1.89
438 439 1.138859 CCATGAGTGGCATCTCCGTAA 59.861 52.381 12.45 0.00 39.01 3.18
439 440 0.752658 CCATGAGTGGCATCTCCGTA 59.247 55.000 12.45 0.00 39.01 4.02
440 441 1.524002 CCATGAGTGGCATCTCCGT 59.476 57.895 12.45 2.14 39.01 4.69
441 442 4.451241 CCATGAGTGGCATCTCCG 57.549 61.111 12.45 5.93 39.01 4.63
450 451 6.331369 ACCATGAAAAGTAAACCATGAGTG 57.669 37.500 0.00 0.00 38.83 3.51
451 452 6.976934 AACCATGAAAAGTAAACCATGAGT 57.023 33.333 0.00 0.00 38.83 3.41
452 453 9.573133 GATAAACCATGAAAAGTAAACCATGAG 57.427 33.333 0.00 0.00 38.83 2.90
453 454 9.083422 TGATAAACCATGAAAAGTAAACCATGA 57.917 29.630 0.00 0.00 38.83 3.07
454 455 9.874205 ATGATAAACCATGAAAAGTAAACCATG 57.126 29.630 0.00 0.00 36.92 3.66
456 457 9.703892 CAATGATAAACCATGAAAAGTAAACCA 57.296 29.630 0.00 0.00 0.00 3.67
457 458 9.150348 CCAATGATAAACCATGAAAAGTAAACC 57.850 33.333 0.00 0.00 0.00 3.27
462 463 7.781324 AGTCCAATGATAAACCATGAAAAGT 57.219 32.000 0.00 0.00 0.00 2.66
470 471 7.606456 GTCTAGAACAAGTCCAATGATAAACCA 59.394 37.037 0.00 0.00 0.00 3.67
476 477 6.365970 AGTGTCTAGAACAAGTCCAATGAT 57.634 37.500 0.00 0.00 40.31 2.45
479 480 4.322049 CCGAGTGTCTAGAACAAGTCCAAT 60.322 45.833 0.00 0.00 40.31 3.16
495 496 4.021456 TGAGACATTGACAATACCGAGTGT 60.021 41.667 0.00 0.00 36.36 3.55
498 499 4.748892 ACTGAGACATTGACAATACCGAG 58.251 43.478 0.00 1.30 0.00 4.63
500 501 6.961359 TTTACTGAGACATTGACAATACCG 57.039 37.500 0.00 0.00 0.00 4.02
504 505 8.084073 CACCAATTTTACTGAGACATTGACAAT 58.916 33.333 0.00 0.00 0.00 2.71
510 511 6.294176 GCTGTCACCAATTTTACTGAGACATT 60.294 38.462 0.00 0.00 34.66 2.71
511 512 5.182001 GCTGTCACCAATTTTACTGAGACAT 59.818 40.000 0.00 0.00 34.66 3.06
513 514 4.757149 AGCTGTCACCAATTTTACTGAGAC 59.243 41.667 0.00 0.00 0.00 3.36
519 520 5.689383 TGAGAAGCTGTCACCAATTTTAC 57.311 39.130 0.00 0.00 0.00 2.01
521 522 5.183904 GGTATGAGAAGCTGTCACCAATTTT 59.816 40.000 1.18 0.00 0.00 1.82
524 525 3.264193 TGGTATGAGAAGCTGTCACCAAT 59.736 43.478 1.18 0.00 0.00 3.16
528 529 6.985188 TTTATTGGTATGAGAAGCTGTCAC 57.015 37.500 1.18 0.00 0.00 3.67
529 530 6.479990 CGATTTATTGGTATGAGAAGCTGTCA 59.520 38.462 1.66 1.66 0.00 3.58
530 531 6.701841 TCGATTTATTGGTATGAGAAGCTGTC 59.298 38.462 0.00 0.00 0.00 3.51
531 532 6.582636 TCGATTTATTGGTATGAGAAGCTGT 58.417 36.000 0.00 0.00 0.00 4.40
532 533 6.347240 GCTCGATTTATTGGTATGAGAAGCTG 60.347 42.308 0.00 0.00 0.00 4.24
534 535 5.698545 AGCTCGATTTATTGGTATGAGAAGC 59.301 40.000 0.00 0.00 0.00 3.86
535 536 7.329717 GGTAGCTCGATTTATTGGTATGAGAAG 59.670 40.741 0.00 0.00 0.00 2.85
536 537 7.152645 GGTAGCTCGATTTATTGGTATGAGAA 58.847 38.462 0.00 0.00 0.00 2.87
544 547 4.283722 AGGTAGGGTAGCTCGATTTATTGG 59.716 45.833 0.00 0.00 0.00 3.16
560 563 8.134202 AGTGAAATTGGAAATTTTAGGTAGGG 57.866 34.615 0.00 0.00 0.00 3.53
583 586 9.994432 CGCTTGAAGAAAGATATAATTTTGAGT 57.006 29.630 0.00 0.00 38.24 3.41
590 593 8.492673 TGTGAACGCTTGAAGAAAGATATAAT 57.507 30.769 0.00 0.00 38.24 1.28
591 594 7.899178 TGTGAACGCTTGAAGAAAGATATAA 57.101 32.000 0.00 0.00 38.24 0.98
600 603 3.021269 ACGTATGTGAACGCTTGAAGA 57.979 42.857 0.00 0.00 46.71 2.87
609 612 4.374906 GCAATTGCAAACACGTATGTGAAC 60.375 41.667 25.36 8.01 44.20 3.18
641 644 4.446385 CAGCATGTCACTTTCCACAAATTG 59.554 41.667 0.00 0.00 0.00 2.32
649 652 3.482722 CATGTCAGCATGTCACTTTCC 57.517 47.619 0.00 0.00 45.48 3.13
660 663 4.383173 CTGCCTATGTAATCATGTCAGCA 58.617 43.478 0.00 0.00 35.70 4.41
688 691 1.925229 ATTGTTGCAAGTGTGTGTGC 58.075 45.000 0.00 0.00 41.29 4.57
689 692 4.639959 CAAAATTGTTGCAAGTGTGTGTG 58.360 39.130 0.00 0.00 0.00 3.82
690 693 3.124976 GCAAAATTGTTGCAAGTGTGTGT 59.875 39.130 6.68 0.00 44.34 3.72
701 706 6.529125 CCTAGCTGAACATAGCAAAATTGTTG 59.471 38.462 0.00 0.00 46.07 3.33
744 752 6.183360 ACGTAGATATGACTTTAAGAGCTGCA 60.183 38.462 1.02 0.00 0.00 4.41
745 753 6.210078 ACGTAGATATGACTTTAAGAGCTGC 58.790 40.000 0.00 0.00 0.00 5.25
757 765 4.036971 AGCTCACAAGGACGTAGATATGAC 59.963 45.833 0.00 0.00 0.00 3.06
758 766 4.036852 CAGCTCACAAGGACGTAGATATGA 59.963 45.833 0.00 0.00 0.00 2.15
764 776 2.288213 TGAACAGCTCACAAGGACGTAG 60.288 50.000 0.00 0.00 0.00 3.51
828 840 6.103330 GGTGATGGTAGACTTTTCTTCTCTC 58.897 44.000 0.00 0.00 32.75 3.20
883 896 8.727910 CGCCGCTATCATTATTATATAGAGGTA 58.272 37.037 11.36 0.00 42.11 3.08
901 915 1.081108 GATCGCTCTTCGCCGCTAT 60.081 57.895 0.00 0.00 38.27 2.97
919 933 0.679002 CTGCTGACACTGGAATGGGG 60.679 60.000 0.00 0.00 0.00 4.96
961 982 1.039068 CAGAGGAGGATGATCGTGCT 58.961 55.000 8.93 8.93 35.67 4.40
963 984 1.039068 AGCAGAGGAGGATGATCGTG 58.961 55.000 0.00 0.00 0.00 4.35
987 1008 0.247655 CGGCCATTTGATCGTCGTTG 60.248 55.000 2.24 0.00 0.00 4.10
988 1009 1.977594 GCGGCCATTTGATCGTCGTT 61.978 55.000 2.24 0.00 0.00 3.85
993 1014 2.023181 CGTGCGGCCATTTGATCG 59.977 61.111 2.24 0.00 0.00 3.69
1096 1117 1.888436 TTCTGAGCCGGGCTGTAGTG 61.888 60.000 29.31 11.25 39.88 2.74
1254 1281 1.592743 CGTGTTGGTCACCCGGATA 59.407 57.895 0.73 0.00 43.51 2.59
1295 1322 1.888436 GCACTGGTCCACGATCCTCA 61.888 60.000 0.00 0.00 0.00 3.86
1419 1446 3.923864 TGGTTGTCGCCGCAGTCT 61.924 61.111 0.00 0.00 0.00 3.24
1532 1562 1.517694 GCAACAATGCGGCATCTGG 60.518 57.895 16.98 11.33 43.83 3.86
1574 1604 0.394762 ACTTGATCCGTGCCATGCAT 60.395 50.000 0.00 0.00 41.91 3.96
1575 1605 1.002257 ACTTGATCCGTGCCATGCA 60.002 52.632 0.00 0.00 35.60 3.96
1653 1696 6.657541 AGATTTAATCCACTTTCCGCTGTTAA 59.342 34.615 0.78 0.00 0.00 2.01
1671 1714 5.241403 TCCTGCCAACTTCTGAGATTTAA 57.759 39.130 0.00 0.00 0.00 1.52
1703 1751 4.720090 CATTGTTTCAGCTGCTACTTCAG 58.280 43.478 9.47 0.00 37.15 3.02
1734 1782 4.601406 TGGCCTAATACAACTCCCAAAT 57.399 40.909 3.32 0.00 0.00 2.32
1752 1800 0.523072 CACCTTGCAGTGTACATGGC 59.477 55.000 13.09 13.09 36.14 4.40
1753 1801 0.523072 GCACCTTGCAGTGTACATGG 59.477 55.000 0.00 0.00 44.26 3.66
1764 1812 2.079925 CACCTCTTCTAAGCACCTTGC 58.920 52.381 0.00 0.00 45.46 4.01
1765 1813 2.079925 GCACCTCTTCTAAGCACCTTG 58.920 52.381 0.00 0.00 0.00 3.61
1766 1814 1.981495 AGCACCTCTTCTAAGCACCTT 59.019 47.619 0.00 0.00 0.00 3.50
1767 1815 1.650528 AGCACCTCTTCTAAGCACCT 58.349 50.000 0.00 0.00 0.00 4.00
1768 1816 2.481289 AAGCACCTCTTCTAAGCACC 57.519 50.000 0.00 0.00 0.00 5.01
1769 1817 7.042335 TCTTTATAAGCACCTCTTCTAAGCAC 58.958 38.462 0.00 0.00 36.25 4.40
1770 1818 7.182817 TCTTTATAAGCACCTCTTCTAAGCA 57.817 36.000 0.00 0.00 36.25 3.91
1771 1819 9.936759 ATATCTTTATAAGCACCTCTTCTAAGC 57.063 33.333 0.00 0.00 36.25 3.09
1796 1844 9.956720 CCGATTCTTAAGAAAAGCATGATTTAT 57.043 29.630 21.26 2.21 37.61 1.40
1797 1845 8.956426 ACCGATTCTTAAGAAAAGCATGATTTA 58.044 29.630 21.26 0.00 37.61 1.40
1798 1846 7.756722 CACCGATTCTTAAGAAAAGCATGATTT 59.243 33.333 21.26 2.39 37.61 2.17
1799 1847 7.253422 CACCGATTCTTAAGAAAAGCATGATT 58.747 34.615 21.26 2.04 37.61 2.57
1800 1848 6.678900 GCACCGATTCTTAAGAAAAGCATGAT 60.679 38.462 21.26 2.77 37.61 2.45
1801 1849 5.391950 GCACCGATTCTTAAGAAAAGCATGA 60.392 40.000 21.26 0.00 37.61 3.07
1802 1850 4.795278 GCACCGATTCTTAAGAAAAGCATG 59.205 41.667 21.26 15.77 37.61 4.06
1803 1851 4.702131 AGCACCGATTCTTAAGAAAAGCAT 59.298 37.500 21.26 5.00 37.61 3.79
1804 1852 4.072131 AGCACCGATTCTTAAGAAAAGCA 58.928 39.130 21.26 0.00 37.61 3.91
1805 1853 4.686839 AGCACCGATTCTTAAGAAAAGC 57.313 40.909 21.26 18.25 37.61 3.51
1806 1854 7.636359 CGATTAAGCACCGATTCTTAAGAAAAG 59.364 37.037 21.26 16.67 37.94 2.27
1807 1855 7.118680 ACGATTAAGCACCGATTCTTAAGAAAA 59.881 33.333 21.26 8.55 37.94 2.29
1808 1856 6.592607 ACGATTAAGCACCGATTCTTAAGAAA 59.407 34.615 21.26 5.97 37.94 2.52
1809 1857 6.103997 ACGATTAAGCACCGATTCTTAAGAA 58.896 36.000 19.83 19.83 37.94 2.52
1810 1858 5.657474 ACGATTAAGCACCGATTCTTAAGA 58.343 37.500 0.00 0.00 37.94 2.10
1811 1859 5.968387 ACGATTAAGCACCGATTCTTAAG 57.032 39.130 0.00 0.00 37.94 1.85
1812 1860 6.331845 TGTACGATTAAGCACCGATTCTTAA 58.668 36.000 0.00 0.00 38.61 1.85
1813 1861 5.893687 TGTACGATTAAGCACCGATTCTTA 58.106 37.500 0.00 0.00 0.00 2.10
1814 1862 4.751060 TGTACGATTAAGCACCGATTCTT 58.249 39.130 0.00 0.00 0.00 2.52
1815 1863 4.360563 CTGTACGATTAAGCACCGATTCT 58.639 43.478 0.00 0.00 0.00 2.40
1816 1864 3.060473 GCTGTACGATTAAGCACCGATTC 60.060 47.826 0.00 0.00 36.91 2.52
1817 1865 2.864343 GCTGTACGATTAAGCACCGATT 59.136 45.455 0.00 0.00 36.91 3.34
1818 1866 2.470821 GCTGTACGATTAAGCACCGAT 58.529 47.619 0.00 0.00 36.91 4.18
1819 1867 1.917273 GCTGTACGATTAAGCACCGA 58.083 50.000 0.00 0.00 36.91 4.69
1832 1880 5.458126 GTCTAATTAAGCACCTACGCTGTAC 59.542 44.000 0.00 0.00 42.89 2.90
1833 1881 5.125900 TGTCTAATTAAGCACCTACGCTGTA 59.874 40.000 0.00 0.00 42.89 2.74
1834 1882 4.081862 TGTCTAATTAAGCACCTACGCTGT 60.082 41.667 0.00 0.00 42.89 4.40
1835 1883 4.267928 GTGTCTAATTAAGCACCTACGCTG 59.732 45.833 7.48 0.00 42.89 5.18
1836 1884 4.430908 GTGTCTAATTAAGCACCTACGCT 58.569 43.478 7.48 0.00 46.67 5.07
1837 1885 3.554731 GGTGTCTAATTAAGCACCTACGC 59.445 47.826 21.62 5.48 43.45 4.42
1842 1890 3.939592 GGTGAGGTGTCTAATTAAGCACC 59.060 47.826 21.48 21.48 45.37 5.01
1843 1891 4.631813 CAGGTGAGGTGTCTAATTAAGCAC 59.368 45.833 9.39 9.39 33.84 4.40
1844 1892 4.286032 ACAGGTGAGGTGTCTAATTAAGCA 59.714 41.667 0.00 0.00 0.00 3.91
1845 1893 4.833390 ACAGGTGAGGTGTCTAATTAAGC 58.167 43.478 0.00 0.00 0.00 3.09
1846 1894 8.842358 TTTTACAGGTGAGGTGTCTAATTAAG 57.158 34.615 0.00 0.00 0.00 1.85
1847 1895 9.802039 ATTTTTACAGGTGAGGTGTCTAATTAA 57.198 29.630 0.00 0.00 0.00 1.40
1849 1897 9.449719 CTATTTTTACAGGTGAGGTGTCTAATT 57.550 33.333 0.00 0.00 0.00 1.40
1850 1898 8.047310 CCTATTTTTACAGGTGAGGTGTCTAAT 58.953 37.037 0.00 0.00 0.00 1.73
1851 1899 7.391620 CCTATTTTTACAGGTGAGGTGTCTAA 58.608 38.462 0.00 0.00 0.00 2.10
1852 1900 6.575649 GCCTATTTTTACAGGTGAGGTGTCTA 60.576 42.308 0.00 0.00 34.18 2.59
1853 1901 5.803470 GCCTATTTTTACAGGTGAGGTGTCT 60.803 44.000 0.00 0.00 34.18 3.41
1854 1902 4.395231 GCCTATTTTTACAGGTGAGGTGTC 59.605 45.833 0.00 0.00 34.18 3.67
1855 1903 4.202524 TGCCTATTTTTACAGGTGAGGTGT 60.203 41.667 0.00 0.00 34.18 4.16
1856 1904 4.156008 GTGCCTATTTTTACAGGTGAGGTG 59.844 45.833 0.00 0.00 34.18 4.00
1857 1905 4.332828 GTGCCTATTTTTACAGGTGAGGT 58.667 43.478 0.00 0.00 34.18 3.85
1858 1906 3.694566 GGTGCCTATTTTTACAGGTGAGG 59.305 47.826 0.00 0.00 34.18 3.86
1859 1907 3.374058 CGGTGCCTATTTTTACAGGTGAG 59.626 47.826 0.00 0.00 34.18 3.51
1860 1908 3.008157 TCGGTGCCTATTTTTACAGGTGA 59.992 43.478 0.00 0.00 34.18 4.02
1861 1909 3.340034 TCGGTGCCTATTTTTACAGGTG 58.660 45.455 0.00 0.00 34.18 4.00
1862 1910 3.706600 TCGGTGCCTATTTTTACAGGT 57.293 42.857 0.00 0.00 34.18 4.00
1863 1911 3.243068 GCATCGGTGCCTATTTTTACAGG 60.243 47.826 10.29 0.00 45.76 4.00
1864 1912 3.952535 GCATCGGTGCCTATTTTTACAG 58.047 45.455 10.29 0.00 45.76 2.74
1877 1925 3.185188 CGGATTATTCTGAAGCATCGGTG 59.815 47.826 0.00 0.00 33.40 4.94
1878 1926 3.393800 CGGATTATTCTGAAGCATCGGT 58.606 45.455 0.00 0.00 33.40 4.69
1879 1927 2.158449 GCGGATTATTCTGAAGCATCGG 59.842 50.000 11.66 11.66 0.00 4.18
1880 1928 3.062763 AGCGGATTATTCTGAAGCATCG 58.937 45.455 0.00 0.00 0.00 3.84
1881 1929 5.429957 AAAGCGGATTATTCTGAAGCATC 57.570 39.130 0.00 0.13 0.00 3.91
1882 1930 7.516198 AATAAAGCGGATTATTCTGAAGCAT 57.484 32.000 0.00 0.00 31.46 3.79
1883 1931 6.942532 AATAAAGCGGATTATTCTGAAGCA 57.057 33.333 0.00 0.00 31.46 3.91
1884 1932 8.634475 AAAAATAAAGCGGATTATTCTGAAGC 57.366 30.769 0.00 0.00 35.07 3.86
1889 1937 9.952188 GCTTAGAAAAATAAAGCGGATTATTCT 57.048 29.630 5.90 0.00 36.59 2.40
1890 1938 9.730420 TGCTTAGAAAAATAAAGCGGATTATTC 57.270 29.630 0.00 0.00 46.78 1.75
1892 1940 9.899226 GATGCTTAGAAAAATAAAGCGGATTAT 57.101 29.630 0.00 0.00 46.78 1.28
1893 1941 9.120538 AGATGCTTAGAAAAATAAAGCGGATTA 57.879 29.630 0.00 0.00 46.78 1.75
1894 1942 8.000780 AGATGCTTAGAAAAATAAAGCGGATT 57.999 30.769 0.00 0.00 46.78 3.01
1895 1943 7.255277 GGAGATGCTTAGAAAAATAAAGCGGAT 60.255 37.037 0.00 0.00 46.78 4.18
1896 1944 6.038271 GGAGATGCTTAGAAAAATAAAGCGGA 59.962 38.462 0.00 0.00 46.78 5.54
1897 1945 6.202226 GGAGATGCTTAGAAAAATAAAGCGG 58.798 40.000 0.00 0.00 46.78 5.52
1898 1946 6.038714 AGGGAGATGCTTAGAAAAATAAAGCG 59.961 38.462 0.00 0.00 46.78 4.68
1899 1947 7.340122 AGGGAGATGCTTAGAAAAATAAAGC 57.660 36.000 0.00 0.00 44.63 3.51
1900 1948 9.061435 CCTAGGGAGATGCTTAGAAAAATAAAG 57.939 37.037 0.00 0.00 0.00 1.85
1901 1949 8.778059 TCCTAGGGAGATGCTTAGAAAAATAAA 58.222 33.333 9.46 0.00 0.00 1.40
1902 1950 8.331931 TCCTAGGGAGATGCTTAGAAAAATAA 57.668 34.615 9.46 0.00 0.00 1.40
1903 1951 7.931015 TCCTAGGGAGATGCTTAGAAAAATA 57.069 36.000 9.46 0.00 0.00 1.40
1904 1952 6.831664 TCCTAGGGAGATGCTTAGAAAAAT 57.168 37.500 9.46 0.00 0.00 1.82
1905 1953 6.415573 GTTCCTAGGGAGATGCTTAGAAAAA 58.584 40.000 9.46 0.00 31.21 1.94
1906 1954 5.104485 GGTTCCTAGGGAGATGCTTAGAAAA 60.104 44.000 9.46 0.00 31.21 2.29
1907 1955 4.409247 GGTTCCTAGGGAGATGCTTAGAAA 59.591 45.833 9.46 0.00 31.21 2.52
1908 1956 3.967987 GGTTCCTAGGGAGATGCTTAGAA 59.032 47.826 9.46 0.00 31.21 2.10
1909 1957 3.207777 AGGTTCCTAGGGAGATGCTTAGA 59.792 47.826 9.46 0.00 31.21 2.10
1910 1958 3.582164 AGGTTCCTAGGGAGATGCTTAG 58.418 50.000 9.46 0.00 31.21 2.18
1911 1959 3.708236 AGGTTCCTAGGGAGATGCTTA 57.292 47.619 9.46 0.00 31.21 3.09
1912 1960 2.577772 AGGTTCCTAGGGAGATGCTT 57.422 50.000 9.46 0.00 31.21 3.91
1913 1961 3.252554 CTAGGTTCCTAGGGAGATGCT 57.747 52.381 9.46 0.00 34.11 3.79
1922 1970 5.453480 GCCTTGTACAATCCTAGGTTCCTAG 60.453 48.000 16.50 16.50 36.65 3.02
1923 1971 4.407945 GCCTTGTACAATCCTAGGTTCCTA 59.592 45.833 9.13 0.00 0.00 2.94
1924 1972 3.200165 GCCTTGTACAATCCTAGGTTCCT 59.800 47.826 9.13 0.00 0.00 3.36
1925 1973 3.542648 GCCTTGTACAATCCTAGGTTCC 58.457 50.000 9.13 0.00 0.00 3.62
1926 1974 3.200165 AGGCCTTGTACAATCCTAGGTTC 59.800 47.826 21.38 10.92 0.00 3.62
1927 1975 3.190439 AGGCCTTGTACAATCCTAGGTT 58.810 45.455 21.38 0.00 0.00 3.50
1928 1976 2.846950 AGGCCTTGTACAATCCTAGGT 58.153 47.619 21.38 4.85 0.00 3.08
1929 1977 3.933861 AAGGCCTTGTACAATCCTAGG 57.066 47.619 19.73 15.44 0.00 3.02
1930 1978 5.740513 GCTCTAAGGCCTTGTACAATCCTAG 60.741 48.000 28.77 18.25 0.00 3.02
1931 1979 4.101119 GCTCTAAGGCCTTGTACAATCCTA 59.899 45.833 28.77 2.40 0.00 2.94
1932 1980 3.118223 GCTCTAAGGCCTTGTACAATCCT 60.118 47.826 28.77 18.62 0.00 3.24
1933 1981 3.206964 GCTCTAAGGCCTTGTACAATCC 58.793 50.000 28.77 13.07 0.00 3.01
1934 1982 3.873910 TGCTCTAAGGCCTTGTACAATC 58.126 45.455 28.77 10.51 0.00 2.67
1935 1983 4.010349 GTTGCTCTAAGGCCTTGTACAAT 58.990 43.478 28.77 1.45 0.00 2.71
1936 1984 3.072476 AGTTGCTCTAAGGCCTTGTACAA 59.928 43.478 28.77 21.40 0.00 2.41
1937 1985 2.637872 AGTTGCTCTAAGGCCTTGTACA 59.362 45.455 28.77 17.00 0.00 2.90
1938 1986 3.263261 GAGTTGCTCTAAGGCCTTGTAC 58.737 50.000 28.77 14.60 0.00 2.90
1939 1987 2.236395 GGAGTTGCTCTAAGGCCTTGTA 59.764 50.000 28.77 14.41 0.00 2.41
1940 1988 1.003696 GGAGTTGCTCTAAGGCCTTGT 59.996 52.381 28.77 4.97 0.00 3.16
1941 1989 1.003580 TGGAGTTGCTCTAAGGCCTTG 59.996 52.381 28.77 17.30 0.00 3.61
1942 1990 1.362224 TGGAGTTGCTCTAAGGCCTT 58.638 50.000 24.18 24.18 0.00 4.35
1943 1991 1.362224 TTGGAGTTGCTCTAAGGCCT 58.638 50.000 0.00 0.00 0.00 5.19
1944 1992 2.019984 CATTGGAGTTGCTCTAAGGCC 58.980 52.381 0.00 0.00 34.66 5.19
1945 1993 2.019984 CCATTGGAGTTGCTCTAAGGC 58.980 52.381 0.00 0.00 34.66 4.35
1946 1994 2.648059 CCCATTGGAGTTGCTCTAAGG 58.352 52.381 3.62 1.39 34.66 2.69
1947 1995 2.648059 CCCCATTGGAGTTGCTCTAAG 58.352 52.381 3.62 0.00 34.66 2.18
1993 2041 2.746277 GTCCGCGCTGACCCAAAT 60.746 61.111 19.96 0.00 0.00 2.32
2002 2050 3.660111 GCCACTTTTGTCCGCGCT 61.660 61.111 5.56 0.00 0.00 5.92
2034 2082 1.539827 GGACACGATTTGAGTTTGGGG 59.460 52.381 0.00 0.00 0.00 4.96
2062 2110 2.362375 AAATGGGTTGGCGCCGAT 60.362 55.556 21.90 0.00 0.00 4.18
2065 2113 4.128388 CGGAAATGGGTTGGCGCC 62.128 66.667 22.73 22.73 0.00 6.53
2272 2320 0.761323 TGTGGACGGGAGAAGTGGAA 60.761 55.000 0.00 0.00 0.00 3.53
2299 2348 1.360393 AAGCAAAGGGAGTGGTGGGA 61.360 55.000 0.00 0.00 0.00 4.37
2356 2407 1.134699 CCATTGCTACAGCCGAAGAGA 60.135 52.381 0.00 0.00 41.18 3.10
2366 2417 0.541530 TTGCCCTTGCCATTGCTACA 60.542 50.000 0.00 0.00 38.71 2.74
2368 2419 0.971959 CCTTGCCCTTGCCATTGCTA 60.972 55.000 0.00 0.00 38.71 3.49
2413 2476 3.468140 GGAGGGGTAGCACGGGAC 61.468 72.222 0.00 0.00 0.00 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.