Multiple sequence alignment - TraesCS2B01G581000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G581000 chr2B 100.000 3560 0 0 1 3560 768608614 768612173 0.000000e+00 6575.0
1 TraesCS2B01G581000 chr2B 91.818 110 9 0 3446 3555 769044692 769044801 1.710000e-33 154.0
2 TraesCS2B01G581000 chr2B 87.234 94 10 2 2819 2911 40351342 40351434 4.860000e-19 106.0
3 TraesCS2B01G581000 chr2A 92.594 2039 103 17 548 2551 757897824 757899849 0.000000e+00 2885.0
4 TraesCS2B01G581000 chr2A 88.202 873 43 19 2546 3396 757899874 757900708 0.000000e+00 987.0
5 TraesCS2B01G581000 chr2A 87.356 87 7 3 3466 3548 757926029 757926115 2.930000e-16 97.1
6 TraesCS2B01G581000 chr2D 92.853 1875 77 17 1699 3556 627163755 627165589 0.000000e+00 2667.0
7 TraesCS2B01G581000 chr2D 94.974 1174 40 7 548 1706 627158892 627160061 0.000000e+00 1823.0
8 TraesCS2B01G581000 chr2D 81.905 105 13 5 2819 2923 55052507 55052409 2.280000e-12 84.2
9 TraesCS2B01G581000 chrUn 99.448 543 3 0 7 549 207818995 207818453 0.000000e+00 987.0
10 TraesCS2B01G581000 chrUn 99.263 543 4 0 7 549 64721727 64721185 0.000000e+00 981.0
11 TraesCS2B01G581000 chrUn 99.263 543 4 0 7 549 356747649 356747107 0.000000e+00 981.0
12 TraesCS2B01G581000 chr1B 99.448 543 3 0 7 549 566974612 566974070 0.000000e+00 987.0
13 TraesCS2B01G581000 chr1B 100.000 35 0 0 2549 2583 17960754 17960720 8.250000e-07 65.8
14 TraesCS2B01G581000 chr5A 99.263 543 4 0 7 549 74930284 74929742 0.000000e+00 981.0
15 TraesCS2B01G581000 chr5A 99.263 543 4 0 7 549 700843294 700842752 0.000000e+00 981.0
16 TraesCS2B01G581000 chr4B 98.907 549 6 0 1 549 461649266 461649814 0.000000e+00 981.0
17 TraesCS2B01G581000 chr4A 98.907 549 6 0 1 549 658932264 658932812 0.000000e+00 981.0
18 TraesCS2B01G581000 chr1A 98.907 549 6 0 1 549 15605472 15606020 0.000000e+00 981.0
19 TraesCS2B01G581000 chr6D 85.981 107 14 1 2819 2924 450511873 450511767 2.900000e-21 113.0
20 TraesCS2B01G581000 chr6A 82.000 100 15 3 2816 2913 72861267 72861365 8.190000e-12 82.4
21 TraesCS2B01G581000 chr3B 100.000 34 0 0 585 618 692221695 692221728 2.970000e-06 63.9
22 TraesCS2B01G581000 chr3A 100.000 34 0 0 585 618 659159946 659159979 2.970000e-06 63.9
23 TraesCS2B01G581000 chr5B 97.059 34 1 0 2876 2909 113878000 113877967 1.380000e-04 58.4
24 TraesCS2B01G581000 chr3D 97.059 34 1 0 585 618 524783168 524783201 1.380000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G581000 chr2B 768608614 768612173 3559 False 6575 6575 100.0000 1 3560 1 chr2B.!!$F2 3559
1 TraesCS2B01G581000 chr2A 757897824 757900708 2884 False 1936 2885 90.3980 548 3396 2 chr2A.!!$F2 2848
2 TraesCS2B01G581000 chr2D 627158892 627165589 6697 False 2245 2667 93.9135 548 3556 2 chr2D.!!$F1 3008
3 TraesCS2B01G581000 chrUn 207818453 207818995 542 True 987 987 99.4480 7 549 1 chrUn.!!$R2 542
4 TraesCS2B01G581000 chrUn 64721185 64721727 542 True 981 981 99.2630 7 549 1 chrUn.!!$R1 542
5 TraesCS2B01G581000 chrUn 356747107 356747649 542 True 981 981 99.2630 7 549 1 chrUn.!!$R3 542
6 TraesCS2B01G581000 chr1B 566974070 566974612 542 True 987 987 99.4480 7 549 1 chr1B.!!$R2 542
7 TraesCS2B01G581000 chr5A 74929742 74930284 542 True 981 981 99.2630 7 549 1 chr5A.!!$R1 542
8 TraesCS2B01G581000 chr5A 700842752 700843294 542 True 981 981 99.2630 7 549 1 chr5A.!!$R2 542
9 TraesCS2B01G581000 chr4B 461649266 461649814 548 False 981 981 98.9070 1 549 1 chr4B.!!$F1 548
10 TraesCS2B01G581000 chr4A 658932264 658932812 548 False 981 981 98.9070 1 549 1 chr4A.!!$F1 548
11 TraesCS2B01G581000 chr1A 15605472 15606020 548 False 981 981 98.9070 1 549 1 chr1A.!!$F1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
571 572 0.314935 ATGGTCAAAGGCAAAGCACG 59.685 50.0 0.0 0.0 0.0 5.34 F
2017 5743 0.460284 AACTGCTATCAAGACCGGCG 60.460 55.0 0.0 0.0 0.0 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2091 5817 0.034186 TGAAATCCAAGGCTCGCCAT 60.034 50.0 11.02 0.0 38.92 4.40 R
2970 6742 0.107945 GCTGGGCTACTGAAGGTCTG 60.108 60.0 0.00 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
518 519 9.494271 TGCTAGTGATTTACTCATGGATTAATC 57.506 33.333 6.93 6.93 40.89 1.75
570 571 3.445096 AGATATGGTCAAAGGCAAAGCAC 59.555 43.478 0.00 0.00 0.00 4.40
571 572 0.314935 ATGGTCAAAGGCAAAGCACG 59.685 50.000 0.00 0.00 0.00 5.34
818 820 6.732862 AGTGCCATTGGAGAAGGTATATCTAT 59.267 38.462 6.95 0.00 0.00 1.98
872 874 8.839310 AGATATGGTGCATAGTATTTTGAGAC 57.161 34.615 0.00 0.00 29.42 3.36
979 981 3.806591 CTGCATCCACCAAAAGCAG 57.193 52.632 0.00 0.00 45.44 4.24
987 989 2.951642 TCCACCAAAAGCAGTTCTCTTG 59.048 45.455 0.00 0.00 0.00 3.02
1083 1095 2.354773 CTTCCCCGCGACGCTATC 60.355 66.667 19.02 0.00 0.00 2.08
1214 1226 5.984725 TGGTTTTCTACTTTCTGTCACTGA 58.015 37.500 0.00 0.00 0.00 3.41
1332 1344 2.994578 GTCTTAGAGGTTTCCTGCGTTC 59.005 50.000 0.00 0.00 31.76 3.95
1434 1451 8.344831 AGTTGAACTTTTACCGGTACAATTAAC 58.655 33.333 15.53 12.65 0.00 2.01
1618 1643 1.847737 ACCTAGAGTCGGAGGAGTCAT 59.152 52.381 18.12 0.00 43.75 3.06
1647 1672 1.448365 CTATGAGCGCTGGTGCACA 60.448 57.895 18.48 5.44 39.71 4.57
1651 1676 3.044059 GAGCGCTGGTGCACATTCC 62.044 63.158 18.48 0.83 39.64 3.01
1736 5462 4.766007 CGCTTCATTCATGAGAATAACCG 58.234 43.478 0.00 0.00 42.46 4.44
1781 5507 1.135689 GCTCAACATTTTCGCCGACAT 60.136 47.619 0.00 0.00 0.00 3.06
1802 5528 2.822637 CCCATGCCGAGCTACCCAT 61.823 63.158 0.00 0.00 0.00 4.00
1863 5589 2.609459 CCACTTCGATTACATGCCTCAC 59.391 50.000 0.00 0.00 0.00 3.51
1864 5590 2.282555 CACTTCGATTACATGCCTCACG 59.717 50.000 0.00 0.00 0.00 4.35
1865 5591 1.860950 CTTCGATTACATGCCTCACGG 59.139 52.381 0.00 0.00 0.00 4.94
1890 5616 2.606826 ACCAACGAGGACCTCCCC 60.607 66.667 16.13 0.00 41.22 4.81
2017 5743 0.460284 AACTGCTATCAAGACCGGCG 60.460 55.000 0.00 0.00 0.00 6.46
2082 5808 1.135286 GCTAACCTTGGTTGCAGATGC 60.135 52.381 14.67 0.00 42.50 3.91
2091 5817 3.588057 TTGCAGATGCGGCGAGTCA 62.588 57.895 12.98 0.00 45.83 3.41
2181 5907 4.337060 CGTCGGTGCCACGTGAGA 62.337 66.667 19.30 5.37 34.94 3.27
2196 5922 1.139853 GTGAGATCGGATGGCCTTTCT 59.860 52.381 3.32 0.00 0.00 2.52
2329 6070 1.674441 TCCACTATTACAGCGAGGACG 59.326 52.381 0.00 0.00 42.93 4.79
2349 6090 2.738480 GGCGTGTACACTGGTCCA 59.262 61.111 23.01 0.00 0.00 4.02
2458 6199 2.201927 GGCACCAATTGGGGTCATC 58.798 57.895 26.61 9.98 44.32 2.92
2459 6200 0.614415 GGCACCAATTGGGGTCATCA 60.614 55.000 26.61 0.00 44.32 3.07
2484 6225 3.261951 ATGTACATGGCGCGCGAC 61.262 61.111 37.18 34.98 0.00 5.19
2485 6226 3.998911 ATGTACATGGCGCGCGACA 62.999 57.895 43.18 43.18 37.65 4.35
2486 6227 3.483665 GTACATGGCGCGCGACAA 61.484 61.111 44.55 25.42 36.35 3.18
2662 6434 5.507985 CCGTCTAAGTGCATGTGATGATCTA 60.508 44.000 0.00 0.00 0.00 1.98
2739 6511 8.498054 TTCTTCCTTCTTGACATGCTTAATAG 57.502 34.615 0.00 0.00 0.00 1.73
2746 6518 6.721318 TCTTGACATGCTTAATAGAAACCCT 58.279 36.000 0.00 0.00 0.00 4.34
2747 6519 7.175104 TCTTGACATGCTTAATAGAAACCCTT 58.825 34.615 0.00 0.00 0.00 3.95
2748 6520 8.325787 TCTTGACATGCTTAATAGAAACCCTTA 58.674 33.333 0.00 0.00 0.00 2.69
2749 6521 8.871629 TTGACATGCTTAATAGAAACCCTTAA 57.128 30.769 0.00 0.00 0.00 1.85
2789 6561 6.404074 GCTCATTGTTCTTGTTGCTTATAGCT 60.404 38.462 0.00 0.00 42.97 3.32
2832 6604 3.914426 TTCTGCTACTCCCTTTGATCC 57.086 47.619 0.00 0.00 0.00 3.36
2844 6616 8.469309 ACTCCCTTTGATCCATATTAATTGTG 57.531 34.615 0.00 0.00 0.00 3.33
2852 6624 8.481492 TGATCCATATTAATTGTGGCTGAAAT 57.519 30.769 12.44 3.74 33.01 2.17
2872 6644 9.347934 CTGAAATGGATGTATCTAGACGTATTC 57.652 37.037 0.00 0.00 0.00 1.75
2873 6645 8.856103 TGAAATGGATGTATCTAGACGTATTCA 58.144 33.333 0.00 0.00 0.00 2.57
2874 6646 9.347934 GAAATGGATGTATCTAGACGTATTCAG 57.652 37.037 0.00 0.00 0.00 3.02
2875 6647 8.410673 AATGGATGTATCTAGACGTATTCAGT 57.589 34.615 0.00 0.00 0.00 3.41
2876 6648 7.203255 TGGATGTATCTAGACGTATTCAGTG 57.797 40.000 0.00 0.00 0.00 3.66
2877 6649 6.087522 GGATGTATCTAGACGTATTCAGTGC 58.912 44.000 0.00 0.00 0.00 4.40
2878 6650 6.072397 GGATGTATCTAGACGTATTCAGTGCT 60.072 42.308 0.00 0.00 0.00 4.40
2879 6651 7.119407 GGATGTATCTAGACGTATTCAGTGCTA 59.881 40.741 0.00 0.00 0.00 3.49
2880 6652 7.422878 TGTATCTAGACGTATTCAGTGCTAG 57.577 40.000 0.00 0.00 0.00 3.42
2881 6653 7.215085 TGTATCTAGACGTATTCAGTGCTAGA 58.785 38.462 8.31 8.31 38.76 2.43
2882 6654 7.878644 TGTATCTAGACGTATTCAGTGCTAGAT 59.121 37.037 17.86 17.86 43.88 1.98
2883 6655 9.368674 GTATCTAGACGTATTCAGTGCTAGATA 57.631 37.037 16.41 16.41 42.47 1.98
2884 6656 7.655236 TCTAGACGTATTCAGTGCTAGATAC 57.345 40.000 0.00 0.00 31.97 2.24
2885 6657 7.215085 TCTAGACGTATTCAGTGCTAGATACA 58.785 38.462 0.00 0.00 31.97 2.29
2886 6658 6.885952 AGACGTATTCAGTGCTAGATACAT 57.114 37.500 0.00 0.00 0.00 2.29
2887 6659 6.904498 AGACGTATTCAGTGCTAGATACATC 58.096 40.000 0.00 0.00 0.00 3.06
2893 6665 6.459670 TTCAGTGCTAGATACATCCGTTTA 57.540 37.500 0.00 0.00 0.00 2.01
2897 6669 5.047847 GTGCTAGATACATCCGTTTAAGCA 58.952 41.667 0.00 0.00 35.26 3.91
2967 6739 6.412214 TCCCATAGGTTCAGTTTAAGTAAGC 58.588 40.000 0.00 0.00 0.00 3.09
2968 6740 6.214819 TCCCATAGGTTCAGTTTAAGTAAGCT 59.785 38.462 0.00 0.00 34.36 3.74
2969 6741 6.884836 CCCATAGGTTCAGTTTAAGTAAGCTT 59.115 38.462 3.48 3.48 38.66 3.74
2970 6742 7.065923 CCCATAGGTTCAGTTTAAGTAAGCTTC 59.934 40.741 0.00 0.00 36.22 3.86
2971 6743 7.606456 CCATAGGTTCAGTTTAAGTAAGCTTCA 59.394 37.037 0.00 0.00 36.22 3.02
2972 6744 8.660373 CATAGGTTCAGTTTAAGTAAGCTTCAG 58.340 37.037 0.00 0.00 36.22 3.02
2973 6745 6.827727 AGGTTCAGTTTAAGTAAGCTTCAGA 58.172 36.000 0.00 0.00 36.22 3.27
2974 6746 6.706716 AGGTTCAGTTTAAGTAAGCTTCAGAC 59.293 38.462 0.00 0.00 36.22 3.51
3002 6774 1.604378 CCCAGCTTTCAGGATCGGT 59.396 57.895 0.00 0.00 0.00 4.69
3003 6775 0.462759 CCCAGCTTTCAGGATCGGTC 60.463 60.000 0.00 0.00 0.00 4.79
3044 6829 5.076182 TGCATTTGGATTGGACTTGACTTA 58.924 37.500 0.00 0.00 0.00 2.24
3107 6897 8.983702 AGCAGCTAGTAGTAGTAGTATTCTTT 57.016 34.615 12.61 0.00 0.00 2.52
3160 6950 4.515191 TCAGGATTTAGCAACAGTTCACAC 59.485 41.667 0.00 0.00 0.00 3.82
3266 7058 9.343103 CTGAAAAGAATCTTCAAATGATGTCAG 57.657 33.333 0.00 0.00 32.57 3.51
3436 7229 2.715046 CATTTCAAGCTCCTAGGCACA 58.285 47.619 2.96 0.00 34.17 4.57
3458 7251 7.080099 CACAATTGAAGTTGAGGACATGTAAG 58.920 38.462 13.59 0.00 33.37 2.34
3468 7261 8.147058 AGTTGAGGACATGTAAGATCATATGTC 58.853 37.037 16.66 16.66 45.29 3.06
3556 7349 4.888626 AAGGGAGAAATATTCAGGCCTT 57.111 40.909 0.00 0.00 0.00 4.35
3557 7350 4.176120 AGGGAGAAATATTCAGGCCTTG 57.824 45.455 0.00 0.00 0.00 3.61
3558 7351 3.117360 AGGGAGAAATATTCAGGCCTTGG 60.117 47.826 0.00 0.00 0.00 3.61
3559 7352 3.225940 GGAGAAATATTCAGGCCTTGGG 58.774 50.000 0.00 0.00 0.00 4.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.756294 TGTGATCTGTTCGTGGTGGT 59.244 50.000 0.00 0.00 0.00 4.16
632 633 3.689347 GGCACTCCCAATGCATCATATA 58.311 45.455 0.00 0.00 45.27 0.86
954 956 0.327924 TTGGTGGATGCAGTCGGAAT 59.672 50.000 0.00 0.00 0.00 3.01
1083 1095 1.471327 CCAGCCAACAACACACAAAGG 60.471 52.381 0.00 0.00 0.00 3.11
1239 1251 5.188555 GCTCATATGATTCTACTGATCCCCA 59.811 44.000 5.72 0.00 0.00 4.96
1332 1344 4.504858 ACGCAACCAACTATAGGAGAAAG 58.495 43.478 4.43 0.00 0.00 2.62
1469 1490 7.148356 CGGCACAACATATAATAGCTCAATCAT 60.148 37.037 0.00 0.00 0.00 2.45
1569 1594 2.124570 ATGCCCATGCTCGTGACC 60.125 61.111 0.00 0.00 38.71 4.02
1618 1643 3.194329 CAGCGCTCATAGAGATCCCATAA 59.806 47.826 7.13 0.00 0.00 1.90
1651 1676 3.490759 GTCACGCGCCACCTCATG 61.491 66.667 5.73 0.00 0.00 3.07
1671 1696 2.391616 AGCGCATCAACTTCTCATCA 57.608 45.000 11.47 0.00 0.00 3.07
1761 5487 0.237235 TGTCGGCGAAAATGTTGAGC 59.763 50.000 12.92 0.00 0.00 4.26
1781 5507 2.731571 GGTAGCTCGGCATGGGTCA 61.732 63.158 0.00 0.00 0.00 4.02
1802 5528 1.014044 GGTGCAATCAGCTTCGACGA 61.014 55.000 0.00 0.00 45.94 4.20
1838 5564 1.940613 GCATGTAATCGAAGTGGTCCC 59.059 52.381 0.00 0.00 0.00 4.46
1840 5566 2.866762 GAGGCATGTAATCGAAGTGGTC 59.133 50.000 0.00 0.00 0.00 4.02
1864 5590 2.480555 CTCGTTGGTGATTGCGCC 59.519 61.111 4.18 0.00 45.13 6.53
1865 5591 2.032634 TCCTCGTTGGTGATTGCGC 61.033 57.895 0.00 0.00 37.07 6.09
1890 5616 2.023181 CGCCAATCAATGCGGTCG 59.977 61.111 0.00 0.00 46.65 4.79
1926 5652 0.729690 GCCCTTGATTCTTGACGCTC 59.270 55.000 0.00 0.00 0.00 5.03
2017 5743 1.067250 GCGACAGATCCTCCAGCTC 59.933 63.158 0.00 0.00 0.00 4.09
2091 5817 0.034186 TGAAATCCAAGGCTCGCCAT 60.034 50.000 11.02 0.00 38.92 4.40
2176 5902 1.139853 AGAAAGGCCATCCGATCTCAC 59.860 52.381 5.01 0.00 37.47 3.51
2181 5907 1.227674 GCGAGAAAGGCCATCCGAT 60.228 57.895 5.01 0.00 37.47 4.18
2196 5922 2.632377 CCTTCTATGGAAGCAAAGCGA 58.368 47.619 13.09 0.00 45.44 4.93
2219 5952 3.493350 GCTGCTGCTGTATACTACATGGT 60.493 47.826 8.53 0.00 38.15 3.55
2237 5970 3.397613 ATCAAGGCCCTCTCGCTGC 62.398 63.158 0.00 0.00 0.00 5.25
2238 5971 1.523258 CATCAAGGCCCTCTCGCTG 60.523 63.158 0.00 0.00 0.00 5.18
2239 5972 2.739996 CCATCAAGGCCCTCTCGCT 61.740 63.158 0.00 0.00 0.00 4.93
2329 6070 1.666872 GACCAGTGTACACGCCCAC 60.667 63.158 19.93 8.57 36.20 4.61
2349 6090 2.045524 TGGGTGATGGTTTTGTTGCAT 58.954 42.857 0.00 0.00 0.00 3.96
2448 6189 1.748732 TGTACCCTTGATGACCCCAA 58.251 50.000 0.00 0.00 0.00 4.12
2458 6199 1.939934 CGCCATGTACATGTACCCTTG 59.060 52.381 29.25 22.28 37.11 3.61
2459 6200 1.745827 GCGCCATGTACATGTACCCTT 60.746 52.381 29.25 13.85 37.11 3.95
2738 6510 5.971260 AGGAGCCTAGTAATTAAGGGTTTCT 59.029 40.000 8.87 7.50 43.50 2.52
2739 6511 6.249911 AGGAGCCTAGTAATTAAGGGTTTC 57.750 41.667 8.87 5.80 43.50 2.78
2789 6561 6.707440 ATTGATAAATGTAAATGTCGGCCA 57.293 33.333 2.24 0.00 0.00 5.36
2832 6604 8.145767 ACATCCATTTCAGCCACAATTAATATG 58.854 33.333 0.00 0.00 0.00 1.78
2844 6616 4.926238 CGTCTAGATACATCCATTTCAGCC 59.074 45.833 0.00 0.00 0.00 4.85
2852 6624 6.294010 GCACTGAATACGTCTAGATACATCCA 60.294 42.308 0.00 0.00 0.00 3.41
2872 6644 5.175856 GCTTAAACGGATGTATCTAGCACTG 59.824 44.000 0.00 0.00 0.00 3.66
2873 6645 5.163447 TGCTTAAACGGATGTATCTAGCACT 60.163 40.000 0.00 0.00 31.80 4.40
2874 6646 5.047847 TGCTTAAACGGATGTATCTAGCAC 58.952 41.667 0.00 0.00 31.80 4.40
2875 6647 5.270893 TGCTTAAACGGATGTATCTAGCA 57.729 39.130 0.00 0.00 34.10 3.49
2876 6648 5.522460 TGTTGCTTAAACGGATGTATCTAGC 59.478 40.000 0.00 0.00 42.10 3.42
2877 6649 7.277981 AGTTGTTGCTTAAACGGATGTATCTAG 59.722 37.037 0.00 0.00 42.10 2.43
2878 6650 7.101054 AGTTGTTGCTTAAACGGATGTATCTA 58.899 34.615 0.00 0.00 42.10 1.98
2879 6651 5.938125 AGTTGTTGCTTAAACGGATGTATCT 59.062 36.000 0.00 0.00 42.10 1.98
2880 6652 6.178239 AGTTGTTGCTTAAACGGATGTATC 57.822 37.500 0.00 0.00 42.10 2.24
2881 6653 7.675962 TTAGTTGTTGCTTAAACGGATGTAT 57.324 32.000 0.00 0.00 42.10 2.29
2882 6654 7.675962 ATTAGTTGTTGCTTAAACGGATGTA 57.324 32.000 0.00 0.00 42.10 2.29
2883 6655 6.569179 ATTAGTTGTTGCTTAAACGGATGT 57.431 33.333 0.00 0.00 42.10 3.06
2884 6656 7.643764 CCATATTAGTTGTTGCTTAAACGGATG 59.356 37.037 0.00 0.00 42.10 3.51
2885 6657 7.554835 TCCATATTAGTTGTTGCTTAAACGGAT 59.445 33.333 0.00 0.00 42.10 4.18
2886 6658 6.879993 TCCATATTAGTTGTTGCTTAAACGGA 59.120 34.615 0.00 0.00 42.10 4.69
2887 6659 7.079182 TCCATATTAGTTGTTGCTTAAACGG 57.921 36.000 0.00 0.00 42.10 4.44
2893 6665 7.667219 CCCTCATATCCATATTAGTTGTTGCTT 59.333 37.037 0.00 0.00 0.00 3.91
2897 6669 8.511748 ACTCCCTCATATCCATATTAGTTGTT 57.488 34.615 0.00 0.00 0.00 2.83
2967 6739 1.902508 TGGGCTACTGAAGGTCTGAAG 59.097 52.381 0.00 0.00 0.00 3.02
2968 6740 1.902508 CTGGGCTACTGAAGGTCTGAA 59.097 52.381 0.00 0.00 0.00 3.02
2969 6741 1.561643 CTGGGCTACTGAAGGTCTGA 58.438 55.000 0.00 0.00 0.00 3.27
2970 6742 0.107945 GCTGGGCTACTGAAGGTCTG 60.108 60.000 0.00 0.00 0.00 3.51
2971 6743 0.252467 AGCTGGGCTACTGAAGGTCT 60.252 55.000 0.00 0.00 36.99 3.85
2972 6744 0.615850 AAGCTGGGCTACTGAAGGTC 59.384 55.000 0.00 0.00 38.25 3.85
2973 6745 1.003696 GAAAGCTGGGCTACTGAAGGT 59.996 52.381 0.00 0.00 38.25 3.50
2974 6746 1.003580 TGAAAGCTGGGCTACTGAAGG 59.996 52.381 0.00 0.00 38.25 3.46
3002 6774 8.623903 CAAATGCAAGGCTAAGAATACAATAGA 58.376 33.333 0.00 0.00 0.00 1.98
3003 6775 7.864379 CCAAATGCAAGGCTAAGAATACAATAG 59.136 37.037 0.00 0.00 0.00 1.73
3107 6897 6.964807 ATGATGGCTACATTGCAAAATAGA 57.035 33.333 19.41 4.93 37.47 1.98
3135 6925 4.757149 GTGAACTGTTGCTAAATCCTGACT 59.243 41.667 0.00 0.00 0.00 3.41
3160 6950 9.930693 ATTTAGTTTAGACTACCTCTTTGACTG 57.069 33.333 0.00 0.00 38.07 3.51
3239 7031 7.811236 TGACATCATTTGAAGATTCTTTTCAGC 59.189 33.333 0.00 0.00 36.07 4.26
3296 7088 9.276590 CAATGCTACCTAAGTTGAATATCATCA 57.723 33.333 0.00 0.00 0.00 3.07
3317 7109 3.795623 AGTTTCATCATGGCTCAATGC 57.204 42.857 0.00 0.00 41.94 3.56
3353 7146 3.949754 CAGTCCTCTTACCATGGTACGTA 59.050 47.826 24.52 9.32 0.00 3.57
3354 7147 2.758979 CAGTCCTCTTACCATGGTACGT 59.241 50.000 24.52 3.42 0.00 3.57
3355 7148 2.758979 ACAGTCCTCTTACCATGGTACG 59.241 50.000 24.52 21.97 0.00 3.67
3356 7149 6.481434 AATACAGTCCTCTTACCATGGTAC 57.519 41.667 24.52 14.32 0.00 3.34
3436 7229 7.884877 TGATCTTACATGTCCTCAACTTCAATT 59.115 33.333 0.00 0.00 0.00 2.32
3458 7251 7.385267 AGCTCCAGAACTTATGACATATGATC 58.615 38.462 10.38 11.39 0.00 2.92
3468 7261 7.872113 ATTTCCTTTAGCTCCAGAACTTATG 57.128 36.000 0.00 0.00 0.00 1.90
3476 7269 9.396022 TCATTAAGTAATTTCCTTTAGCTCCAG 57.604 33.333 0.00 0.00 0.00 3.86
3477 7270 9.747898 TTCATTAAGTAATTTCCTTTAGCTCCA 57.252 29.630 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.