Multiple sequence alignment - TraesCS2B01G580800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G580800 chr2B 100.000 4443 0 0 693 5135 768289431 768293873 0.000000e+00 8205.0
1 TraesCS2B01G580800 chr2B 83.281 963 108 29 1702 2630 769552126 769551183 0.000000e+00 837.0
2 TraesCS2B01G580800 chr2B 88.735 506 51 6 4330 4834 768129493 768128993 9.450000e-172 614.0
3 TraesCS2B01G580800 chr2B 100.000 294 0 0 1 294 768288739 768289032 1.260000e-150 544.0
4 TraesCS2B01G580800 chr2B 81.073 317 38 7 1267 1583 769552445 769552151 3.090000e-57 233.0
5 TraesCS2B01G580800 chr2B 95.161 124 6 0 5012 5135 768129007 768128884 4.060000e-46 196.0
6 TraesCS2B01G580800 chr2B 80.000 165 14 7 1084 1248 769557524 769557379 2.530000e-18 104.0
7 TraesCS2B01G580800 chr2B 85.897 78 7 2 1728 1801 769557930 769557853 4.260000e-11 80.5
8 TraesCS2B01G580800 chr2D 94.157 3782 184 12 693 4457 626810454 626806693 0.000000e+00 5725.0
9 TraesCS2B01G580800 chr2D 90.625 544 46 5 4262 4801 626804770 626804228 0.000000e+00 717.0
10 TraesCS2B01G580800 chr2D 96.167 287 4 5 10 294 626810879 626810598 3.620000e-126 462.0
11 TraesCS2B01G580800 chr2D 84.080 402 46 10 4445 4834 626806598 626806203 6.280000e-99 372.0
12 TraesCS2B01G580800 chr2A 95.139 3559 159 3 693 4243 757637690 757634138 0.000000e+00 5602.0
13 TraesCS2B01G580800 chr2A 89.451 455 37 5 4221 4671 757634134 757633687 9.650000e-157 564.0
14 TraesCS2B01G580800 chr2A 93.286 283 5 3 25 294 757638115 757637834 6.190000e-109 405.0
15 TraesCS2B01G580800 chr6B 95.082 183 6 1 4835 5017 37774307 37774486 8.420000e-73 285.0
16 TraesCS2B01G580800 chr6A 92.500 160 9 2 4835 4992 369546552 369546710 5.170000e-55 226.0
17 TraesCS2B01G580800 chr7B 86.740 181 20 2 4835 5014 706187627 706187804 1.130000e-46 198.0
18 TraesCS2B01G580800 chr3B 86.188 181 20 4 4835 5014 12626074 12626250 1.890000e-44 191.0
19 TraesCS2B01G580800 chr3B 94.845 97 2 1 4835 4931 426810269 426810362 1.150000e-31 148.0
20 TraesCS2B01G580800 chr1A 89.474 133 12 1 4860 4992 52829085 52829215 3.180000e-37 167.0
21 TraesCS2B01G580800 chrUn 100.000 31 0 0 4907 4937 87013090 87013120 2.000000e-04 58.4
22 TraesCS2B01G580800 chr3D 100.000 31 0 0 4907 4937 596091020 596091050 2.000000e-04 58.4
23 TraesCS2B01G580800 chr3A 100.000 31 0 0 4907 4937 726848703 726848733 2.000000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G580800 chr2B 768288739 768293873 5134 False 4374.500000 8205 100.000000 1 5135 2 chr2B.!!$F1 5134
1 TraesCS2B01G580800 chr2B 769551183 769552445 1262 True 535.000000 837 82.177000 1267 2630 2 chr2B.!!$R2 1363
2 TraesCS2B01G580800 chr2B 768128884 768129493 609 True 405.000000 614 91.948000 4330 5135 2 chr2B.!!$R1 805
3 TraesCS2B01G580800 chr2D 626804228 626810879 6651 True 1819.000000 5725 91.257250 10 4834 4 chr2D.!!$R1 4824
4 TraesCS2B01G580800 chr2A 757633687 757638115 4428 True 2190.333333 5602 92.625333 25 4671 3 chr2A.!!$R1 4646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
794 821 0.108804 GCTCAGTTCGTCGGGATTCA 60.109 55.0 0.00 0.00 0.00 2.57 F
830 857 0.244994 TTCTCTCGTTGCTGAGGAGC 59.755 55.0 5.76 0.00 46.44 4.70 F
2700 2765 0.184933 ACAACTTGCTTACTGGGCCA 59.815 50.0 5.85 5.85 0.00 5.36 F
3359 3427 0.322456 CCAGATGGGCGAAAGGTTGA 60.322 55.0 0.00 0.00 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2244 2292 0.112995 AGCTGGTCAATTTGGGCAGA 59.887 50.0 0.00 0.0 0.00 4.26 R
2784 2849 0.251354 AGCTCGACATGCCTGACAAT 59.749 50.0 0.00 0.0 0.00 2.71 R
4095 4163 0.589223 GGTTTTCGGCAATGTCGTCA 59.411 50.0 7.25 0.0 30.45 4.35 R
4909 5128 0.042431 CCCCACCCCCATGAAAATCA 59.958 55.0 0.00 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.217210 CTTGCCCCACCACCACCA 62.217 66.667 0.00 0.00 0.00 4.17
18 19 4.531426 TTGCCCCACCACCACCAC 62.531 66.667 0.00 0.00 0.00 4.16
228 244 4.038080 GGGCGCACGGGAAAGTTG 62.038 66.667 10.83 0.00 0.00 3.16
292 309 3.771491 CACTGACTGCGCTGCGTC 61.771 66.667 24.04 15.82 34.56 5.19
779 806 4.069232 CTTCCGCCACCGAGCTCA 62.069 66.667 15.40 0.00 36.29 4.26
794 821 0.108804 GCTCAGTTCGTCGGGATTCA 60.109 55.000 0.00 0.00 0.00 2.57
800 827 1.725164 GTTCGTCGGGATTCACTTGAC 59.275 52.381 0.00 0.00 0.00 3.18
804 831 2.806244 CGTCGGGATTCACTTGACTTTT 59.194 45.455 0.00 0.00 0.00 2.27
830 857 0.244994 TTCTCTCGTTGCTGAGGAGC 59.755 55.000 5.76 0.00 46.44 4.70
838 865 3.793144 GCTGAGGAGCGTTTGCCG 61.793 66.667 0.00 0.00 44.31 5.69
843 870 4.090057 GGAGCGTTTGCCGTCTGC 62.090 66.667 0.00 0.00 44.31 4.26
907 935 2.604152 GTGGTGTGGGGTTTGGGA 59.396 61.111 0.00 0.00 0.00 4.37
923 951 1.524849 GGAGGAGAATTGCTCGCCC 60.525 63.158 0.00 0.00 44.83 6.13
961 989 1.356124 TGCTCTTCAGGAAAGGAGCT 58.644 50.000 18.30 0.00 38.19 4.09
1089 1117 2.426023 GCCCTGAACCAGACGTGT 59.574 61.111 0.00 0.00 32.44 4.49
1560 1588 4.735132 TCCGGCAACCGCTTCTCG 62.735 66.667 0.00 0.00 46.86 4.04
2020 2059 3.070015 TGAGATCACACTCAACTTCAGCA 59.930 43.478 0.00 0.00 42.79 4.41
2021 2060 3.661944 AGATCACACTCAACTTCAGCAG 58.338 45.455 0.00 0.00 0.00 4.24
2148 2196 3.359950 GAACAAGCTTGATGGGGAGATT 58.640 45.455 32.50 12.84 0.00 2.40
2176 2224 6.150809 GGAGAGCTTCAAGAATTTGAGTTCAT 59.849 38.462 0.00 0.00 43.76 2.57
2327 2379 1.478105 GGATGGCATCAAAGGGTTCAC 59.522 52.381 27.39 3.73 0.00 3.18
2409 2468 0.980423 AGACCCTTGAGAACCTCAGC 59.020 55.000 0.00 0.00 41.75 4.26
2537 2600 0.895530 CTCCCCGAGAGCTTTACACA 59.104 55.000 0.00 0.00 35.31 3.72
2692 2757 4.041567 TGATCCTCTCCAACAACTTGCTTA 59.958 41.667 0.00 0.00 0.00 3.09
2700 2765 0.184933 ACAACTTGCTTACTGGGCCA 59.815 50.000 5.85 5.85 0.00 5.36
2735 2800 1.074405 TGGCCATCTTGTGAAGCTTCT 59.926 47.619 26.09 2.80 0.00 2.85
2748 2813 3.244215 TGAAGCTTCTTGTACTGGACCTG 60.244 47.826 26.09 0.00 0.00 4.00
2750 2815 2.972713 AGCTTCTTGTACTGGACCTGAA 59.027 45.455 5.22 0.00 0.00 3.02
2766 2831 3.199946 ACCTGAACTGGAACAACTTCTCA 59.800 43.478 4.82 0.00 38.70 3.27
2778 2843 1.280457 ACTTCTCAGGGCGAATTCCT 58.720 50.000 0.00 0.00 34.39 3.36
2850 2915 2.042464 GATCTCAGTGGGAGCATACCA 58.958 52.381 2.64 0.00 43.70 3.25
2862 2927 3.573598 GAGCATACCATCATCTCTGACG 58.426 50.000 0.00 0.00 33.22 4.35
2868 2933 2.159128 ACCATCATCTCTGACGAAGCTG 60.159 50.000 0.00 0.00 33.22 4.24
2883 2948 2.977772 AGCTGAATTTCCTCTCCGAG 57.022 50.000 0.00 0.00 0.00 4.63
2925 2990 5.983333 ATTTGACTGGAGATATCCCAACT 57.017 39.130 3.38 0.00 32.53 3.16
2946 3011 1.886542 GGAGGCCAGTTTTCGACATTT 59.113 47.619 5.01 0.00 0.00 2.32
2962 3027 3.319755 ACATTTGCGAATGAAGGCTTTG 58.680 40.909 29.52 5.24 44.37 2.77
2971 3036 1.422531 TGAAGGCTTTGTGGGCAATT 58.577 45.000 0.00 0.00 34.18 2.32
2973 3038 1.344114 GAAGGCTTTGTGGGCAATTCA 59.656 47.619 0.00 0.00 34.18 2.57
2985 3050 0.886563 GCAATTCAGCACTCTGCCTT 59.113 50.000 0.00 0.00 46.52 4.35
3007 3072 2.268920 GGAATGCGTCCTGCTCCA 59.731 61.111 0.00 0.00 46.63 3.86
3019 3084 0.739112 CTGCTCCAAGAAGGCTCGAC 60.739 60.000 0.00 0.00 37.29 4.20
3138 3203 2.503356 TGTGATTTTGGCAAGGGTTGTT 59.497 40.909 0.00 0.00 0.00 2.83
3144 3209 1.104577 TGGCAAGGGTTGTTCGTTCC 61.105 55.000 0.00 0.00 0.00 3.62
3147 3212 0.951558 CAAGGGTTGTTCGTTCCAGG 59.048 55.000 0.00 0.00 0.00 4.45
3294 3362 4.943705 ACGAACCACTTTGATCAAGCATAT 59.056 37.500 8.41 0.00 35.65 1.78
3342 3410 1.804151 GTCTACAAATCAACGCTGCCA 59.196 47.619 0.00 0.00 0.00 4.92
3359 3427 0.322456 CCAGATGGGCGAAAGGTTGA 60.322 55.000 0.00 0.00 0.00 3.18
3393 3461 5.344743 TTTCAGGCGACTATTCTCAGATT 57.655 39.130 0.00 0.00 40.21 2.40
3414 3482 0.836400 AGAGGGAGTTTCAGGCCGAA 60.836 55.000 0.00 0.83 0.00 4.30
3644 3712 2.845019 ACATGTCATGTGAGCCACG 58.155 52.632 17.74 0.00 43.01 4.94
3651 3719 1.754226 TCATGTGAGCCACGCATACTA 59.246 47.619 7.12 0.00 46.29 1.82
3681 3749 4.147321 ACATCAAGTCAAGCAACATCCTT 58.853 39.130 0.00 0.00 0.00 3.36
3702 3770 2.093973 TCTGGATGAGAACTTCGAAGCC 60.094 50.000 24.86 16.38 0.00 4.35
3708 3776 3.096852 TGAGAACTTCGAAGCCCATCTA 58.903 45.455 24.86 9.43 0.00 1.98
3714 3782 0.747255 TCGAAGCCCATCTAGCAGAC 59.253 55.000 0.00 0.00 0.00 3.51
3732 3800 3.708220 CTTCGGACTGGCGAGGCTC 62.708 68.421 3.87 3.87 0.00 4.70
3762 3830 2.280592 GACACCCACGTCACCACC 60.281 66.667 0.00 0.00 35.88 4.61
3903 3971 3.434319 GTGGACATGTGCAGGCCG 61.434 66.667 21.38 0.00 0.00 6.13
3954 4022 3.197333 TGCTTCAGATGAGGAAAGAGGAG 59.803 47.826 0.00 0.00 0.00 3.69
4095 4163 1.900498 GCAGCTTGTCACCTGGCTT 60.900 57.895 0.00 0.00 32.30 4.35
4107 4175 1.503542 CTGGCTTGACGACATTGCC 59.496 57.895 19.46 19.46 42.21 4.52
4192 4260 1.811359 GCTTGAGCAGAGCATCAGTTT 59.189 47.619 0.00 0.00 39.89 2.66
4193 4261 2.414293 GCTTGAGCAGAGCATCAGTTTG 60.414 50.000 0.00 0.00 39.89 2.93
4194 4262 1.817357 TGAGCAGAGCATCAGTTTGG 58.183 50.000 0.00 0.00 37.82 3.28
4346 4450 6.823286 TCCATAAAGGTGATCACAGGAATA 57.177 37.500 26.47 12.16 39.02 1.75
4483 4693 8.665643 TGTTTTCGAGTGAATTTAGGAACTTA 57.334 30.769 0.00 0.00 34.89 2.24
4484 4694 9.280174 TGTTTTCGAGTGAATTTAGGAACTTAT 57.720 29.630 0.00 0.00 34.89 1.73
4496 4707 7.894376 TTTAGGAACTTATAGTTTGACACCG 57.106 36.000 0.00 0.00 38.80 4.94
4513 4724 1.094073 CCGAGAGCCAAAGGATGCTG 61.094 60.000 0.00 0.00 38.11 4.41
4537 4748 1.630369 TGTCTGCATGACCTTAGCCTT 59.370 47.619 11.99 0.00 44.75 4.35
4538 4749 2.837591 TGTCTGCATGACCTTAGCCTTA 59.162 45.455 11.99 0.00 44.75 2.69
4540 4751 3.107601 TCTGCATGACCTTAGCCTTAGT 58.892 45.455 0.00 0.00 0.00 2.24
4561 4772 6.809630 AGTCTGCTATTTCTCAGTTTTTCC 57.190 37.500 0.00 0.00 0.00 3.13
4562 4773 5.707764 AGTCTGCTATTTCTCAGTTTTTCCC 59.292 40.000 0.00 0.00 0.00 3.97
4563 4774 5.707764 GTCTGCTATTTCTCAGTTTTTCCCT 59.292 40.000 0.00 0.00 0.00 4.20
4566 4777 5.243730 TGCTATTTCTCAGTTTTTCCCTTGG 59.756 40.000 0.00 0.00 0.00 3.61
4567 4778 4.607293 ATTTCTCAGTTTTTCCCTTGGC 57.393 40.909 0.00 0.00 0.00 4.52
4568 4779 2.746279 TCTCAGTTTTTCCCTTGGCA 57.254 45.000 0.00 0.00 0.00 4.92
4569 4780 3.243359 TCTCAGTTTTTCCCTTGGCAT 57.757 42.857 0.00 0.00 0.00 4.40
4570 4781 4.380843 TCTCAGTTTTTCCCTTGGCATA 57.619 40.909 0.00 0.00 0.00 3.14
4571 4782 4.934356 TCTCAGTTTTTCCCTTGGCATAT 58.066 39.130 0.00 0.00 0.00 1.78
4573 4784 4.934356 TCAGTTTTTCCCTTGGCATATCT 58.066 39.130 0.00 0.00 0.00 1.98
4589 4800 7.910584 TGGCATATCTGTGTATTCTGTGATAT 58.089 34.615 0.00 0.00 0.00 1.63
4590 4801 9.034800 TGGCATATCTGTGTATTCTGTGATATA 57.965 33.333 0.00 0.00 0.00 0.86
4619 4830 8.775220 TTGTAAACATATTTTGTGACTTGACG 57.225 30.769 0.00 0.00 38.99 4.35
4625 4836 3.347958 TTTTGTGACTTGACGAATGGC 57.652 42.857 0.00 0.00 0.00 4.40
4630 4841 1.338105 TGACTTGACGAATGGCTGGAG 60.338 52.381 0.00 0.00 0.00 3.86
4659 4870 5.408604 AGCTACAATGTTGTTCTAAACGAGG 59.591 40.000 3.45 0.00 42.35 4.63
4662 4873 7.095523 GCTACAATGTTGTTCTAAACGAGGTTA 60.096 37.037 3.45 0.00 42.35 2.85
4673 4884 6.884832 TCTAAACGAGGTTAACATCATGGAT 58.115 36.000 19.31 4.18 0.00 3.41
4726 4945 7.519032 TTTTTGTAGTTCTAAACCATCTGGG 57.481 36.000 0.54 0.00 44.81 4.45
4747 4966 5.335827 GGTGATGATTCAGCGTTTCTATC 57.664 43.478 0.00 0.00 40.26 2.08
4753 4972 1.645034 TCAGCGTTTCTATCTGCAGC 58.355 50.000 9.47 0.00 0.00 5.25
4777 4996 6.476706 GCTATTTTACAGATTTTGTGGGCATC 59.523 38.462 0.00 0.00 41.10 3.91
4782 5001 4.261578 CAGATTTTGTGGGCATCTGTTT 57.738 40.909 2.91 0.00 39.34 2.83
4829 5048 9.914834 TGGTATACATTTTTCTTAGTGGCTATT 57.085 29.630 5.01 0.00 0.00 1.73
4833 5052 7.889589 ACATTTTTCTTAGTGGCTATTTTGC 57.110 32.000 0.00 0.00 0.00 3.68
4847 5066 6.667007 GCTATTTTGCCAAAAATGCTACAT 57.333 33.333 17.44 0.14 44.04 2.29
4848 5067 6.708676 GCTATTTTGCCAAAAATGCTACATC 58.291 36.000 17.44 0.00 44.04 3.06
4849 5068 6.536224 GCTATTTTGCCAAAAATGCTACATCT 59.464 34.615 17.44 0.00 44.04 2.90
4850 5069 7.706179 GCTATTTTGCCAAAAATGCTACATCTA 59.294 33.333 17.44 0.00 44.04 1.98
4851 5070 7.832503 ATTTTGCCAAAAATGCTACATCTAC 57.167 32.000 6.70 0.00 42.97 2.59
4852 5071 5.973899 TTGCCAAAAATGCTACATCTACA 57.026 34.783 0.00 0.00 0.00 2.74
4853 5072 5.565592 TGCCAAAAATGCTACATCTACAG 57.434 39.130 0.00 0.00 0.00 2.74
4854 5073 4.398988 TGCCAAAAATGCTACATCTACAGG 59.601 41.667 0.00 0.00 0.00 4.00
4855 5074 4.202050 GCCAAAAATGCTACATCTACAGGG 60.202 45.833 0.00 0.00 0.00 4.45
4856 5075 4.202050 CCAAAAATGCTACATCTACAGGGC 60.202 45.833 0.00 0.00 0.00 5.19
4857 5076 4.510167 AAAATGCTACATCTACAGGGCT 57.490 40.909 0.00 0.00 0.00 5.19
4858 5077 4.510167 AAATGCTACATCTACAGGGCTT 57.490 40.909 0.00 0.00 0.00 4.35
4859 5078 4.510167 AATGCTACATCTACAGGGCTTT 57.490 40.909 0.00 0.00 0.00 3.51
4860 5079 5.630415 AATGCTACATCTACAGGGCTTTA 57.370 39.130 0.00 0.00 0.00 1.85
4861 5080 4.402056 TGCTACATCTACAGGGCTTTAC 57.598 45.455 0.00 0.00 0.00 2.01
4862 5081 3.772572 TGCTACATCTACAGGGCTTTACA 59.227 43.478 0.00 0.00 0.00 2.41
4863 5082 4.141937 TGCTACATCTACAGGGCTTTACAG 60.142 45.833 0.00 0.00 0.00 2.74
4864 5083 3.914426 ACATCTACAGGGCTTTACAGG 57.086 47.619 0.00 0.00 0.00 4.00
4865 5084 3.450904 ACATCTACAGGGCTTTACAGGA 58.549 45.455 0.00 0.00 0.00 3.86
4866 5085 3.452627 ACATCTACAGGGCTTTACAGGAG 59.547 47.826 0.00 0.00 0.00 3.69
4867 5086 3.185880 TCTACAGGGCTTTACAGGAGT 57.814 47.619 0.00 0.00 0.00 3.85
4868 5087 3.517612 TCTACAGGGCTTTACAGGAGTT 58.482 45.455 0.00 0.00 0.00 3.01
4869 5088 3.908103 TCTACAGGGCTTTACAGGAGTTT 59.092 43.478 0.00 0.00 0.00 2.66
4870 5089 5.088730 TCTACAGGGCTTTACAGGAGTTTA 58.911 41.667 0.00 0.00 0.00 2.01
4871 5090 4.017177 ACAGGGCTTTACAGGAGTTTAC 57.983 45.455 0.00 0.00 0.00 2.01
4872 5091 3.393278 ACAGGGCTTTACAGGAGTTTACA 59.607 43.478 0.00 0.00 0.00 2.41
4873 5092 4.003648 CAGGGCTTTACAGGAGTTTACAG 58.996 47.826 0.00 0.00 0.00 2.74
4874 5093 3.009143 AGGGCTTTACAGGAGTTTACAGG 59.991 47.826 0.00 0.00 0.00 4.00
4875 5094 2.747989 GGCTTTACAGGAGTTTACAGGC 59.252 50.000 0.00 0.00 0.00 4.85
4876 5095 3.559384 GGCTTTACAGGAGTTTACAGGCT 60.559 47.826 0.00 0.00 0.00 4.58
4877 5096 3.685272 GCTTTACAGGAGTTTACAGGCTC 59.315 47.826 0.00 0.00 0.00 4.70
4882 5101 2.404923 GGAGTTTACAGGCTCCTTCC 57.595 55.000 3.56 0.00 45.78 3.46
4883 5102 1.405661 GGAGTTTACAGGCTCCTTCCG 60.406 57.143 3.56 0.00 45.78 4.30
4884 5103 1.549170 GAGTTTACAGGCTCCTTCCGA 59.451 52.381 0.00 0.00 0.00 4.55
4885 5104 1.975680 AGTTTACAGGCTCCTTCCGAA 59.024 47.619 0.00 0.00 0.00 4.30
4886 5105 2.074576 GTTTACAGGCTCCTTCCGAAC 58.925 52.381 0.00 0.00 0.00 3.95
4887 5106 1.640917 TTACAGGCTCCTTCCGAACT 58.359 50.000 0.00 0.00 0.00 3.01
4888 5107 1.640917 TACAGGCTCCTTCCGAACTT 58.359 50.000 0.00 0.00 0.00 2.66
4889 5108 0.321996 ACAGGCTCCTTCCGAACTTC 59.678 55.000 0.00 0.00 0.00 3.01
4890 5109 0.321671 CAGGCTCCTTCCGAACTTCA 59.678 55.000 0.00 0.00 0.00 3.02
4891 5110 1.065854 CAGGCTCCTTCCGAACTTCAT 60.066 52.381 0.00 0.00 0.00 2.57
4892 5111 2.168521 CAGGCTCCTTCCGAACTTCATA 59.831 50.000 0.00 0.00 0.00 2.15
4893 5112 2.838202 AGGCTCCTTCCGAACTTCATAA 59.162 45.455 0.00 0.00 0.00 1.90
4894 5113 3.263425 AGGCTCCTTCCGAACTTCATAAA 59.737 43.478 0.00 0.00 0.00 1.40
4895 5114 3.374367 GGCTCCTTCCGAACTTCATAAAC 59.626 47.826 0.00 0.00 0.00 2.01
4896 5115 4.000988 GCTCCTTCCGAACTTCATAAACA 58.999 43.478 0.00 0.00 0.00 2.83
4897 5116 4.636206 GCTCCTTCCGAACTTCATAAACAT 59.364 41.667 0.00 0.00 0.00 2.71
4898 5117 5.220681 GCTCCTTCCGAACTTCATAAACATC 60.221 44.000 0.00 0.00 0.00 3.06
4899 5118 5.800296 TCCTTCCGAACTTCATAAACATCA 58.200 37.500 0.00 0.00 0.00 3.07
4900 5119 5.642063 TCCTTCCGAACTTCATAAACATCAC 59.358 40.000 0.00 0.00 0.00 3.06
4901 5120 5.163754 CCTTCCGAACTTCATAAACATCACC 60.164 44.000 0.00 0.00 0.00 4.02
4902 5121 4.258543 TCCGAACTTCATAAACATCACCC 58.741 43.478 0.00 0.00 0.00 4.61
4903 5122 3.377172 CCGAACTTCATAAACATCACCCC 59.623 47.826 0.00 0.00 0.00 4.95
4904 5123 3.377172 CGAACTTCATAAACATCACCCCC 59.623 47.826 0.00 0.00 0.00 5.40
4923 5142 3.228939 CCCCTGATTTTCATGGGGG 57.771 57.895 16.98 12.41 45.29 5.40
4924 5143 0.339510 CCCCTGATTTTCATGGGGGT 59.660 55.000 16.98 0.00 45.29 4.95
4925 5144 1.488390 CCCTGATTTTCATGGGGGTG 58.512 55.000 0.00 0.00 33.76 4.61
4926 5145 1.488390 CCTGATTTTCATGGGGGTGG 58.512 55.000 0.00 0.00 0.00 4.61
4927 5146 1.488390 CTGATTTTCATGGGGGTGGG 58.512 55.000 0.00 0.00 0.00 4.61
4928 5147 0.042431 TGATTTTCATGGGGGTGGGG 59.958 55.000 0.00 0.00 0.00 4.96
4929 5148 1.306911 ATTTTCATGGGGGTGGGGC 60.307 57.895 0.00 0.00 0.00 5.80
4930 5149 2.838436 ATTTTCATGGGGGTGGGGCC 62.838 60.000 0.00 0.00 0.00 5.80
4944 5163 2.681591 GGCCCCTCCCCAACTAAC 59.318 66.667 0.00 0.00 0.00 2.34
4945 5164 2.235761 GGCCCCTCCCCAACTAACA 61.236 63.158 0.00 0.00 0.00 2.41
4946 5165 1.001269 GCCCCTCCCCAACTAACAC 60.001 63.158 0.00 0.00 0.00 3.32
4947 5166 1.689412 CCCCTCCCCAACTAACACC 59.311 63.158 0.00 0.00 0.00 4.16
4948 5167 1.689412 CCCTCCCCAACTAACACCC 59.311 63.158 0.00 0.00 0.00 4.61
4949 5168 1.137594 CCCTCCCCAACTAACACCCA 61.138 60.000 0.00 0.00 0.00 4.51
4950 5169 0.774908 CCTCCCCAACTAACACCCAA 59.225 55.000 0.00 0.00 0.00 4.12
4951 5170 1.357761 CCTCCCCAACTAACACCCAAT 59.642 52.381 0.00 0.00 0.00 3.16
4952 5171 2.225267 CCTCCCCAACTAACACCCAATT 60.225 50.000 0.00 0.00 0.00 2.32
4953 5172 3.010808 CCTCCCCAACTAACACCCAATTA 59.989 47.826 0.00 0.00 0.00 1.40
4954 5173 4.509482 CCTCCCCAACTAACACCCAATTAA 60.509 45.833 0.00 0.00 0.00 1.40
4955 5174 5.076057 TCCCCAACTAACACCCAATTAAA 57.924 39.130 0.00 0.00 0.00 1.52
4956 5175 5.464984 TCCCCAACTAACACCCAATTAAAA 58.535 37.500 0.00 0.00 0.00 1.52
4957 5176 5.903589 TCCCCAACTAACACCCAATTAAAAA 59.096 36.000 0.00 0.00 0.00 1.94
4958 5177 5.992829 CCCCAACTAACACCCAATTAAAAAC 59.007 40.000 0.00 0.00 0.00 2.43
4959 5178 5.992829 CCCAACTAACACCCAATTAAAAACC 59.007 40.000 0.00 0.00 0.00 3.27
4960 5179 5.692654 CCAACTAACACCCAATTAAAAACCG 59.307 40.000 0.00 0.00 0.00 4.44
4961 5180 4.873817 ACTAACACCCAATTAAAAACCGC 58.126 39.130 0.00 0.00 0.00 5.68
4962 5181 2.823924 ACACCCAATTAAAAACCGCC 57.176 45.000 0.00 0.00 0.00 6.13
4963 5182 2.040178 ACACCCAATTAAAAACCGCCA 58.960 42.857 0.00 0.00 0.00 5.69
4964 5183 2.224090 ACACCCAATTAAAAACCGCCAC 60.224 45.455 0.00 0.00 0.00 5.01
4965 5184 2.040178 ACCCAATTAAAAACCGCCACA 58.960 42.857 0.00 0.00 0.00 4.17
4966 5185 2.635427 ACCCAATTAAAAACCGCCACAT 59.365 40.909 0.00 0.00 0.00 3.21
4967 5186 3.833070 ACCCAATTAAAAACCGCCACATA 59.167 39.130 0.00 0.00 0.00 2.29
4968 5187 4.283722 ACCCAATTAAAAACCGCCACATAA 59.716 37.500 0.00 0.00 0.00 1.90
4969 5188 5.221661 ACCCAATTAAAAACCGCCACATAAA 60.222 36.000 0.00 0.00 0.00 1.40
4970 5189 5.701290 CCCAATTAAAAACCGCCACATAAAA 59.299 36.000 0.00 0.00 0.00 1.52
4971 5190 6.372937 CCCAATTAAAAACCGCCACATAAAAT 59.627 34.615 0.00 0.00 0.00 1.82
4972 5191 7.413548 CCCAATTAAAAACCGCCACATAAAATC 60.414 37.037 0.00 0.00 0.00 2.17
4973 5192 7.118390 CCAATTAAAAACCGCCACATAAAATCA 59.882 33.333 0.00 0.00 0.00 2.57
4974 5193 8.499162 CAATTAAAAACCGCCACATAAAATCAA 58.501 29.630 0.00 0.00 0.00 2.57
4975 5194 8.785329 ATTAAAAACCGCCACATAAAATCAAT 57.215 26.923 0.00 0.00 0.00 2.57
4976 5195 6.720012 AAAAACCGCCACATAAAATCAATC 57.280 33.333 0.00 0.00 0.00 2.67
4977 5196 4.385358 AACCGCCACATAAAATCAATCC 57.615 40.909 0.00 0.00 0.00 3.01
4978 5197 2.357637 ACCGCCACATAAAATCAATCCG 59.642 45.455 0.00 0.00 0.00 4.18
4979 5198 2.287547 CCGCCACATAAAATCAATCCGG 60.288 50.000 0.00 0.00 0.00 5.14
4980 5199 2.357637 CGCCACATAAAATCAATCCGGT 59.642 45.455 0.00 0.00 0.00 5.28
4981 5200 3.562141 CGCCACATAAAATCAATCCGGTA 59.438 43.478 0.00 0.00 0.00 4.02
4982 5201 4.035792 CGCCACATAAAATCAATCCGGTAA 59.964 41.667 0.00 0.00 0.00 2.85
4983 5202 5.449314 CGCCACATAAAATCAATCCGGTAAA 60.449 40.000 0.00 0.00 0.00 2.01
4984 5203 5.746721 GCCACATAAAATCAATCCGGTAAAC 59.253 40.000 0.00 0.00 0.00 2.01
4985 5204 6.405397 GCCACATAAAATCAATCCGGTAAACT 60.405 38.462 0.00 0.00 0.00 2.66
4986 5205 7.193595 CCACATAAAATCAATCCGGTAAACTC 58.806 38.462 0.00 0.00 0.00 3.01
4987 5206 7.193595 CACATAAAATCAATCCGGTAAACTCC 58.806 38.462 0.00 0.00 0.00 3.85
4988 5207 7.067008 CACATAAAATCAATCCGGTAAACTCCT 59.933 37.037 0.00 0.00 0.00 3.69
4989 5208 5.897377 AAAATCAATCCGGTAAACTCCTG 57.103 39.130 0.00 0.00 0.00 3.86
4990 5209 4.569719 AATCAATCCGGTAAACTCCTGT 57.430 40.909 0.00 0.00 0.00 4.00
4991 5210 5.687166 AATCAATCCGGTAAACTCCTGTA 57.313 39.130 0.00 0.00 0.00 2.74
4992 5211 5.687166 ATCAATCCGGTAAACTCCTGTAA 57.313 39.130 0.00 0.00 0.00 2.41
4993 5212 5.486735 TCAATCCGGTAAACTCCTGTAAA 57.513 39.130 0.00 0.00 0.00 2.01
4994 5213 5.867330 TCAATCCGGTAAACTCCTGTAAAA 58.133 37.500 0.00 0.00 0.00 1.52
4995 5214 6.297582 TCAATCCGGTAAACTCCTGTAAAAA 58.702 36.000 0.00 0.00 0.00 1.94
4996 5215 6.205270 TCAATCCGGTAAACTCCTGTAAAAAC 59.795 38.462 0.00 0.00 0.00 2.43
4997 5216 4.388485 TCCGGTAAACTCCTGTAAAAACC 58.612 43.478 0.00 0.00 0.00 3.27
4998 5217 3.503363 CCGGTAAACTCCTGTAAAAACCC 59.497 47.826 0.00 0.00 0.00 4.11
4999 5218 3.187022 CGGTAAACTCCTGTAAAAACCCG 59.813 47.826 0.00 0.00 0.00 5.28
5000 5219 4.136796 GGTAAACTCCTGTAAAAACCCGT 58.863 43.478 0.00 0.00 0.00 5.28
5001 5220 5.304778 GGTAAACTCCTGTAAAAACCCGTA 58.695 41.667 0.00 0.00 0.00 4.02
5002 5221 5.939883 GGTAAACTCCTGTAAAAACCCGTAT 59.060 40.000 0.00 0.00 0.00 3.06
5003 5222 5.952526 AAACTCCTGTAAAAACCCGTATG 57.047 39.130 0.00 0.00 0.00 2.39
5004 5223 4.628963 ACTCCTGTAAAAACCCGTATGT 57.371 40.909 0.00 0.00 0.00 2.29
5005 5224 5.743636 ACTCCTGTAAAAACCCGTATGTA 57.256 39.130 0.00 0.00 0.00 2.29
5006 5225 6.303903 ACTCCTGTAAAAACCCGTATGTAT 57.696 37.500 0.00 0.00 0.00 2.29
5007 5226 7.422465 ACTCCTGTAAAAACCCGTATGTATA 57.578 36.000 0.00 0.00 0.00 1.47
5010 5229 6.050432 CCTGTAAAAACCCGTATGTATAGCA 58.950 40.000 0.00 0.00 0.00 3.49
5012 5231 7.227910 CCTGTAAAAACCCGTATGTATAGCATT 59.772 37.037 0.00 0.00 38.94 3.56
5015 5234 7.399245 AAAAACCCGTATGTATAGCATTGTT 57.601 32.000 0.00 0.00 38.94 2.83
5035 5254 6.249035 TGTTGCTATTTTGCTGTAGTAACC 57.751 37.500 9.68 0.00 40.53 2.85
5040 5259 5.815740 GCTATTTTGCTGTAGTAACCTGCTA 59.184 40.000 0.00 0.00 0.00 3.49
5041 5260 6.315393 GCTATTTTGCTGTAGTAACCTGCTAA 59.685 38.462 0.00 0.00 0.00 3.09
5042 5261 7.012421 GCTATTTTGCTGTAGTAACCTGCTAAT 59.988 37.037 0.00 0.00 0.00 1.73
5044 5263 7.605410 TTTTGCTGTAGTAACCTGCTAATAC 57.395 36.000 0.00 0.00 0.00 1.89
5045 5264 5.925506 TGCTGTAGTAACCTGCTAATACA 57.074 39.130 0.00 0.00 32.91 2.29
5046 5265 5.657474 TGCTGTAGTAACCTGCTAATACAC 58.343 41.667 0.00 0.00 31.19 2.90
5048 5267 4.675510 TGTAGTAACCTGCTAATACACGC 58.324 43.478 0.00 0.00 29.83 5.34
5049 5268 4.400251 TGTAGTAACCTGCTAATACACGCT 59.600 41.667 0.00 0.00 29.83 5.07
5051 5270 2.762535 AACCTGCTAATACACGCTGT 57.237 45.000 0.00 0.00 0.00 4.40
5052 5271 2.762535 ACCTGCTAATACACGCTGTT 57.237 45.000 0.00 0.00 0.00 3.16
5053 5272 3.053831 ACCTGCTAATACACGCTGTTT 57.946 42.857 0.00 0.00 0.00 2.83
5054 5273 3.000727 ACCTGCTAATACACGCTGTTTC 58.999 45.455 0.00 0.00 0.00 2.78
5055 5274 3.000041 CCTGCTAATACACGCTGTTTCA 59.000 45.455 0.00 0.00 0.00 2.69
5057 5276 4.494690 CCTGCTAATACACGCTGTTTCATG 60.495 45.833 0.00 0.00 0.00 3.07
5058 5277 3.181511 TGCTAATACACGCTGTTTCATGC 60.182 43.478 0.00 0.00 0.00 4.06
5059 5278 3.063997 GCTAATACACGCTGTTTCATGCT 59.936 43.478 0.00 0.00 0.00 3.79
5061 5280 2.967459 TACACGCTGTTTCATGCTTG 57.033 45.000 0.00 0.00 35.10 4.01
5082 5303 5.691508 TGCGAGCGAATTTACTAACTTAC 57.308 39.130 0.00 0.00 0.00 2.34
5088 5309 7.096558 CGAGCGAATTTACTAACTTACAGGATC 60.097 40.741 0.00 0.00 0.00 3.36
5090 5311 8.038944 AGCGAATTTACTAACTTACAGGATCAA 58.961 33.333 0.00 0.00 0.00 2.57
5100 5321 6.764308 ACTTACAGGATCAAAACATCCATG 57.236 37.500 2.39 0.00 44.57 3.66
5116 5337 6.540083 ACATCCATGCTCTGATGATATTCAA 58.460 36.000 14.32 0.00 40.64 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.531426 GTGGTGGTGGTGGGGCAA 62.531 66.667 0.00 0.00 0.00 4.52
5 6 4.596585 GGTGGTGGTGGTGGTGGG 62.597 72.222 0.00 0.00 0.00 4.61
9 10 3.814906 TGGTGGTGGTGGTGGTGG 61.815 66.667 0.00 0.00 0.00 4.61
10 11 2.518349 GTGGTGGTGGTGGTGGTG 60.518 66.667 0.00 0.00 0.00 4.17
11 12 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
12 13 3.814906 TGGTGGTGGTGGTGGTGG 61.815 66.667 0.00 0.00 0.00 4.61
13 14 2.518349 GTGGTGGTGGTGGTGGTG 60.518 66.667 0.00 0.00 0.00 4.17
14 15 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
15 16 3.790416 CTGGTGGTGGTGGTGGTGG 62.790 68.421 0.00 0.00 0.00 4.61
16 17 2.203337 CTGGTGGTGGTGGTGGTG 60.203 66.667 0.00 0.00 0.00 4.17
17 18 4.204028 GCTGGTGGTGGTGGTGGT 62.204 66.667 0.00 0.00 0.00 4.16
18 19 4.974721 GGCTGGTGGTGGTGGTGG 62.975 72.222 0.00 0.00 0.00 4.61
66 67 2.823758 GGGCTGGATAGGGAGTGGC 61.824 68.421 0.00 0.00 0.00 5.01
191 207 4.360027 CACCGTCGTCGTCGTCGT 62.360 66.667 17.80 6.11 44.09 4.34
192 208 4.063230 TCACCGTCGTCGTCGTCG 62.063 66.667 13.54 13.54 44.85 5.12
193 209 2.498466 GTCACCGTCGTCGTCGTC 60.498 66.667 10.76 0.00 38.33 4.20
228 244 2.432628 CGCTGTCTCCCCACGTTC 60.433 66.667 0.00 0.00 0.00 3.95
779 806 1.616865 TCAAGTGAATCCCGACGAACT 59.383 47.619 0.00 0.00 0.00 3.01
781 808 1.616865 AGTCAAGTGAATCCCGACGAA 59.383 47.619 0.00 0.00 0.00 3.85
794 821 3.463704 AGAGAAAGGGGGAAAAGTCAAGT 59.536 43.478 0.00 0.00 0.00 3.16
800 827 2.814336 CAACGAGAGAAAGGGGGAAAAG 59.186 50.000 0.00 0.00 0.00 2.27
804 831 0.836400 AGCAACGAGAGAAAGGGGGA 60.836 55.000 0.00 0.00 0.00 4.81
838 865 2.551270 CCGCAAGAACACGCAGAC 59.449 61.111 0.00 0.00 43.02 3.51
843 870 1.577328 ATCCAAGCCGCAAGAACACG 61.577 55.000 0.00 0.00 43.02 4.49
845 872 0.881118 GAATCCAAGCCGCAAGAACA 59.119 50.000 0.00 0.00 43.02 3.18
888 916 2.909965 CCAAACCCCACACCACCG 60.910 66.667 0.00 0.00 0.00 4.94
891 919 2.773527 CCTCCCAAACCCCACACCA 61.774 63.158 0.00 0.00 0.00 4.17
907 935 1.222936 CAGGGCGAGCAATTCTCCT 59.777 57.895 0.00 0.00 38.62 3.69
923 951 1.605710 CATGAAAATCCGCTAGCCCAG 59.394 52.381 9.66 0.00 0.00 4.45
1089 1117 1.689243 CCTCCAGGTCATCCGCATCA 61.689 60.000 0.00 0.00 39.05 3.07
1450 1478 2.047274 CACCACCTCAATCGCCGT 60.047 61.111 0.00 0.00 0.00 5.68
1560 1588 2.639327 GGTGGTGTTGATGCTGCCC 61.639 63.158 0.00 0.00 0.00 5.36
1719 1747 2.047560 GTGTACAGGTCACCCGGC 60.048 66.667 0.00 0.00 35.12 6.13
2020 2059 2.282745 GTTCAGCCTTGGCAGCCT 60.283 61.111 14.15 0.00 0.00 4.58
2021 2060 2.598394 TGTTCAGCCTTGGCAGCC 60.598 61.111 14.54 3.66 0.00 4.85
2148 2196 3.007940 TCAAATTCTTGAAGCTCTCCGGA 59.992 43.478 2.93 2.93 38.65 5.14
2176 2224 1.137282 TGTCAGCGACAGGTACAACAA 59.863 47.619 7.20 0.00 37.67 2.83
2244 2292 0.112995 AGCTGGTCAATTTGGGCAGA 59.887 50.000 0.00 0.00 0.00 4.26
2409 2468 0.948623 TCCACGAAATGTCCAGCACG 60.949 55.000 0.00 0.00 0.00 5.34
2523 2586 3.862267 CCTTCATCTGTGTAAAGCTCTCG 59.138 47.826 0.00 0.00 0.00 4.04
2537 2600 5.013495 TCACTTGAAATCAGACCCTTCATCT 59.987 40.000 0.00 0.00 0.00 2.90
2700 2765 4.755656 CCAAACCCCGGCAATACT 57.244 55.556 0.00 0.00 0.00 2.12
2712 2777 1.615392 AGCTTCACAAGATGGCCAAAC 59.385 47.619 10.96 7.46 0.00 2.93
2718 2783 4.999950 AGTACAAGAAGCTTCACAAGATGG 59.000 41.667 27.57 6.60 0.00 3.51
2735 2800 2.684943 TCCAGTTCAGGTCCAGTACAA 58.315 47.619 0.00 0.00 0.00 2.41
2748 2813 3.142174 CCCTGAGAAGTTGTTCCAGTTC 58.858 50.000 0.00 0.00 32.91 3.01
2750 2815 1.202818 GCCCTGAGAAGTTGTTCCAGT 60.203 52.381 0.00 0.00 32.91 4.00
2778 2843 2.679336 CGACATGCCTGACAATTCATCA 59.321 45.455 0.00 0.00 0.00 3.07
2784 2849 0.251354 AGCTCGACATGCCTGACAAT 59.749 50.000 0.00 0.00 0.00 2.71
2792 2857 1.537202 ACTTTTCCAAGCTCGACATGC 59.463 47.619 0.00 0.00 32.57 4.06
2850 2915 4.669206 ATTCAGCTTCGTCAGAGATGAT 57.331 40.909 0.00 0.00 0.00 2.45
2862 2927 3.252974 TCGGAGAGGAAATTCAGCTTC 57.747 47.619 0.00 0.00 0.00 3.86
2925 2990 0.400213 ATGTCGAAAACTGGCCTCCA 59.600 50.000 3.32 0.00 0.00 3.86
2928 2993 1.000274 GCAAATGTCGAAAACTGGCCT 60.000 47.619 3.32 0.00 0.00 5.19
2939 3004 1.131126 AGCCTTCATTCGCAAATGTCG 59.869 47.619 0.00 0.00 42.46 4.35
2946 3011 0.597568 CCACAAAGCCTTCATTCGCA 59.402 50.000 0.00 0.00 0.00 5.10
2962 3027 0.524862 CAGAGTGCTGAATTGCCCAC 59.475 55.000 0.00 0.00 45.17 4.61
2971 3036 0.037882 CGAAGAAGGCAGAGTGCTGA 60.038 55.000 0.00 0.00 45.17 4.26
2973 3038 1.188219 TCCGAAGAAGGCAGAGTGCT 61.188 55.000 0.00 0.00 44.28 4.40
3007 3072 1.048601 TCCACAAGTCGAGCCTTCTT 58.951 50.000 0.00 0.00 0.00 2.52
3019 3084 1.656441 GGTGTGCTGCTTCCACAAG 59.344 57.895 15.65 0.00 44.01 3.16
3138 3203 1.215382 CTCGTGCATCCTGGAACGA 59.785 57.895 18.11 18.11 0.00 3.85
3144 3209 2.370824 GATTGCGCTCGTGCATCCTG 62.371 60.000 9.73 0.00 45.78 3.86
3147 3212 1.980951 TTGGATTGCGCTCGTGCATC 61.981 55.000 9.73 5.13 45.78 3.91
3294 3362 5.013547 CCAAAACCACCACATCCAACTATA 58.986 41.667 0.00 0.00 0.00 1.31
3342 3410 0.984230 TCTCAACCTTTCGCCCATCT 59.016 50.000 0.00 0.00 0.00 2.90
3351 3419 1.168714 GGCGCTTGATCTCAACCTTT 58.831 50.000 7.64 0.00 0.00 3.11
3353 3421 0.326264 AAGGCGCTTGATCTCAACCT 59.674 50.000 7.64 0.00 33.05 3.50
3393 3461 1.544825 CGGCCTGAAACTCCCTCTCA 61.545 60.000 0.00 0.00 0.00 3.27
3644 3712 3.710326 TGATGTCTCGGTGTAGTATGC 57.290 47.619 0.00 0.00 0.00 3.14
3651 3719 2.868044 GCTTGACTTGATGTCTCGGTGT 60.868 50.000 0.12 0.00 45.54 4.16
3681 3749 2.093973 GGCTTCGAAGTTCTCATCCAGA 60.094 50.000 25.24 0.00 0.00 3.86
3696 3764 0.749649 AGTCTGCTAGATGGGCTTCG 59.250 55.000 0.00 0.00 0.00 3.79
3702 3770 2.028130 AGTCCGAAGTCTGCTAGATGG 58.972 52.381 0.00 0.00 0.00 3.51
3708 3776 2.659610 GCCAGTCCGAAGTCTGCT 59.340 61.111 0.00 0.00 0.00 4.24
3714 3782 3.708220 GAGCCTCGCCAGTCCGAAG 62.708 68.421 0.00 0.00 36.72 3.79
3732 3800 2.505498 GGTGTCGTATGCGCAGACG 61.505 63.158 42.33 42.33 46.19 4.18
3741 3809 1.180456 TGGTGACGTGGGTGTCGTAT 61.180 55.000 0.00 0.00 41.87 3.06
3762 3830 1.447838 CAGGGTCCCAACGACATCG 60.448 63.158 11.55 0.00 43.95 3.84
3903 3971 3.003763 ACGTCCCTGCTCCCCTTC 61.004 66.667 0.00 0.00 0.00 3.46
3954 4022 1.978580 TGGAAAACCTCAGTCTCCCTC 59.021 52.381 0.00 0.00 0.00 4.30
4095 4163 0.589223 GGTTTTCGGCAATGTCGTCA 59.411 50.000 7.25 0.00 30.45 4.35
4107 4175 6.257193 ACTGGATTATTAAGCTACGGTTTTCG 59.743 38.462 0.00 0.00 45.88 3.46
4147 4215 9.331282 GCAAAACCAGAACTATATATCTGAAGT 57.669 33.333 12.92 3.35 44.64 3.01
4148 4216 9.553064 AGCAAAACCAGAACTATATATCTGAAG 57.447 33.333 12.92 2.86 44.64 3.02
4149 4217 9.905713 AAGCAAAACCAGAACTATATATCTGAA 57.094 29.630 12.92 0.00 44.64 3.02
4150 4218 9.330063 CAAGCAAAACCAGAACTATATATCTGA 57.670 33.333 12.92 0.00 44.64 3.27
4192 4260 2.457743 ATTTCACGGCGCTACCACCA 62.458 55.000 6.90 0.00 39.03 4.17
4193 4261 1.743995 ATTTCACGGCGCTACCACC 60.744 57.895 6.90 0.00 39.03 4.61
4194 4262 1.423845 CATTTCACGGCGCTACCAC 59.576 57.895 6.90 0.00 39.03 4.16
4352 4456 8.914011 AGATGGTTTAGAACTACAAAGCTTTTT 58.086 29.630 9.53 5.95 34.17 1.94
4483 4693 1.899814 TGGCTCTCGGTGTCAAACTAT 59.100 47.619 0.00 0.00 0.00 2.12
4484 4694 1.334160 TGGCTCTCGGTGTCAAACTA 58.666 50.000 0.00 0.00 0.00 2.24
4496 4707 1.093159 CACAGCATCCTTTGGCTCTC 58.907 55.000 0.00 0.00 38.56 3.20
4537 4748 6.879458 GGGAAAAACTGAGAAATAGCAGACTA 59.121 38.462 0.00 0.00 36.07 2.59
4538 4749 5.707764 GGGAAAAACTGAGAAATAGCAGACT 59.292 40.000 0.00 0.00 36.07 3.24
4540 4751 5.880901 AGGGAAAAACTGAGAAATAGCAGA 58.119 37.500 0.00 0.00 36.07 4.26
4561 4772 5.237996 CACAGAATACACAGATATGCCAAGG 59.762 44.000 0.00 0.00 0.00 3.61
4562 4773 6.051074 TCACAGAATACACAGATATGCCAAG 58.949 40.000 0.00 0.00 0.00 3.61
4563 4774 5.988287 TCACAGAATACACAGATATGCCAA 58.012 37.500 0.00 0.00 0.00 4.52
4601 4812 5.512788 GCCATTCGTCAAGTCACAAAATATG 59.487 40.000 0.00 0.00 0.00 1.78
4604 4815 3.569701 AGCCATTCGTCAAGTCACAAAAT 59.430 39.130 0.00 0.00 0.00 1.82
4614 4825 0.674581 CAGCTCCAGCCATTCGTCAA 60.675 55.000 0.00 0.00 43.38 3.18
4615 4826 1.078918 CAGCTCCAGCCATTCGTCA 60.079 57.895 0.00 0.00 43.38 4.35
4619 4830 2.105124 GCTTCAGCTCCAGCCATTC 58.895 57.895 2.60 0.00 43.38 2.67
4630 4841 4.756084 AGAACAACATTGTAGCTTCAGC 57.244 40.909 0.00 0.00 41.31 4.26
4638 4849 8.550376 GTTAACCTCGTTTAGAACAACATTGTA 58.450 33.333 0.00 0.00 41.31 2.41
4721 4940 0.904649 ACGCTGAATCATCACCCAGA 59.095 50.000 0.00 0.00 0.00 3.86
4723 4942 2.083774 GAAACGCTGAATCATCACCCA 58.916 47.619 0.00 0.00 0.00 4.51
4724 4943 2.359900 AGAAACGCTGAATCATCACCC 58.640 47.619 0.00 0.00 0.00 4.61
4725 4944 5.050499 CAGATAGAAACGCTGAATCATCACC 60.050 44.000 0.00 0.00 0.00 4.02
4726 4945 5.557893 GCAGATAGAAACGCTGAATCATCAC 60.558 44.000 0.00 0.00 0.00 3.06
4727 4946 4.509230 GCAGATAGAAACGCTGAATCATCA 59.491 41.667 0.00 0.00 0.00 3.07
4729 4948 4.445453 TGCAGATAGAAACGCTGAATCAT 58.555 39.130 0.00 0.00 0.00 2.45
4731 4950 3.303001 GCTGCAGATAGAAACGCTGAATC 60.303 47.826 20.43 0.00 0.00 2.52
4732 4951 2.611292 GCTGCAGATAGAAACGCTGAAT 59.389 45.455 20.43 0.00 0.00 2.57
4734 4953 1.205655 AGCTGCAGATAGAAACGCTGA 59.794 47.619 20.43 0.00 0.00 4.26
4735 4954 1.649664 AGCTGCAGATAGAAACGCTG 58.350 50.000 20.43 0.00 0.00 5.18
4737 4956 4.802876 AAATAGCTGCAGATAGAAACGC 57.197 40.909 20.43 0.00 0.00 4.84
4738 4957 7.222805 TCTGTAAAATAGCTGCAGATAGAAACG 59.777 37.037 20.43 9.22 32.09 3.60
4739 4958 8.425577 TCTGTAAAATAGCTGCAGATAGAAAC 57.574 34.615 20.43 12.94 32.09 2.78
4741 4960 9.618890 AAATCTGTAAAATAGCTGCAGATAGAA 57.381 29.630 20.43 0.00 43.53 2.10
4742 4961 9.618890 AAAATCTGTAAAATAGCTGCAGATAGA 57.381 29.630 20.43 9.52 43.53 1.98
4743 4962 9.661187 CAAAATCTGTAAAATAGCTGCAGATAG 57.339 33.333 20.43 3.24 43.53 2.08
4744 4963 9.177608 ACAAAATCTGTAAAATAGCTGCAGATA 57.822 29.630 20.43 17.64 43.53 1.98
4747 4966 6.529125 CCACAAAATCTGTAAAATAGCTGCAG 59.471 38.462 10.11 10.11 36.10 4.41
4753 4972 7.703621 CAGATGCCCACAAAATCTGTAAAATAG 59.296 37.037 4.15 0.00 41.49 1.73
4824 5043 6.536224 AGATGTAGCATTTTTGGCAAAATAGC 59.464 34.615 28.05 28.05 40.09 2.97
4825 5044 9.023967 GTAGATGTAGCATTTTTGGCAAAATAG 57.976 33.333 24.61 19.76 40.09 1.73
4826 5045 8.526978 TGTAGATGTAGCATTTTTGGCAAAATA 58.473 29.630 24.61 15.86 40.09 1.40
4827 5046 7.385267 TGTAGATGTAGCATTTTTGGCAAAAT 58.615 30.769 24.61 13.12 42.37 1.82
4828 5047 6.753180 TGTAGATGTAGCATTTTTGGCAAAA 58.247 32.000 20.81 20.81 36.30 2.44
4829 5048 6.338214 TGTAGATGTAGCATTTTTGGCAAA 57.662 33.333 8.93 8.93 0.00 3.68
4830 5049 5.105797 CCTGTAGATGTAGCATTTTTGGCAA 60.106 40.000 0.00 0.00 0.00 4.52
4831 5050 4.398988 CCTGTAGATGTAGCATTTTTGGCA 59.601 41.667 0.00 0.00 0.00 4.92
4832 5051 4.202050 CCCTGTAGATGTAGCATTTTTGGC 60.202 45.833 0.00 0.00 0.00 4.52
4833 5052 4.202050 GCCCTGTAGATGTAGCATTTTTGG 60.202 45.833 0.00 0.00 0.00 3.28
4834 5053 4.641989 AGCCCTGTAGATGTAGCATTTTTG 59.358 41.667 0.00 0.00 0.00 2.44
4835 5054 4.860022 AGCCCTGTAGATGTAGCATTTTT 58.140 39.130 0.00 0.00 0.00 1.94
4836 5055 4.510167 AGCCCTGTAGATGTAGCATTTT 57.490 40.909 0.00 0.00 0.00 1.82
4837 5056 4.510167 AAGCCCTGTAGATGTAGCATTT 57.490 40.909 0.00 0.00 0.00 2.32
4838 5057 4.510167 AAAGCCCTGTAGATGTAGCATT 57.490 40.909 0.00 0.00 0.00 3.56
4839 5058 4.408921 TGTAAAGCCCTGTAGATGTAGCAT 59.591 41.667 0.00 0.00 0.00 3.79
4840 5059 3.772572 TGTAAAGCCCTGTAGATGTAGCA 59.227 43.478 0.00 0.00 0.00 3.49
4841 5060 4.372656 CTGTAAAGCCCTGTAGATGTAGC 58.627 47.826 0.00 0.00 0.00 3.58
4842 5061 4.649674 TCCTGTAAAGCCCTGTAGATGTAG 59.350 45.833 0.00 0.00 0.00 2.74
4843 5062 4.616553 TCCTGTAAAGCCCTGTAGATGTA 58.383 43.478 0.00 0.00 0.00 2.29
4844 5063 3.450904 TCCTGTAAAGCCCTGTAGATGT 58.549 45.455 0.00 0.00 0.00 3.06
4845 5064 3.452627 ACTCCTGTAAAGCCCTGTAGATG 59.547 47.826 0.00 0.00 0.00 2.90
4846 5065 3.725634 ACTCCTGTAAAGCCCTGTAGAT 58.274 45.455 0.00 0.00 0.00 1.98
4847 5066 3.185880 ACTCCTGTAAAGCCCTGTAGA 57.814 47.619 0.00 0.00 0.00 2.59
4848 5067 3.983044 AACTCCTGTAAAGCCCTGTAG 57.017 47.619 0.00 0.00 0.00 2.74
4849 5068 4.594062 TGTAAACTCCTGTAAAGCCCTGTA 59.406 41.667 0.00 0.00 0.00 2.74
4850 5069 3.393278 TGTAAACTCCTGTAAAGCCCTGT 59.607 43.478 0.00 0.00 0.00 4.00
4851 5070 4.003648 CTGTAAACTCCTGTAAAGCCCTG 58.996 47.826 0.00 0.00 0.00 4.45
4852 5071 3.009143 CCTGTAAACTCCTGTAAAGCCCT 59.991 47.826 0.00 0.00 0.00 5.19
4853 5072 3.344515 CCTGTAAACTCCTGTAAAGCCC 58.655 50.000 0.00 0.00 0.00 5.19
4854 5073 2.747989 GCCTGTAAACTCCTGTAAAGCC 59.252 50.000 0.00 0.00 0.00 4.35
4855 5074 3.676093 AGCCTGTAAACTCCTGTAAAGC 58.324 45.455 0.00 0.00 0.00 3.51
4864 5083 1.549170 TCGGAAGGAGCCTGTAAACTC 59.451 52.381 0.00 0.00 0.00 3.01
4865 5084 1.640917 TCGGAAGGAGCCTGTAAACT 58.359 50.000 0.00 0.00 0.00 2.66
4866 5085 2.074576 GTTCGGAAGGAGCCTGTAAAC 58.925 52.381 0.00 0.00 0.00 2.01
4867 5086 1.975680 AGTTCGGAAGGAGCCTGTAAA 59.024 47.619 0.00 0.00 0.00 2.01
4868 5087 1.640917 AGTTCGGAAGGAGCCTGTAA 58.359 50.000 0.00 0.00 0.00 2.41
4869 5088 1.549170 GAAGTTCGGAAGGAGCCTGTA 59.451 52.381 0.00 0.00 0.00 2.74
4870 5089 0.321996 GAAGTTCGGAAGGAGCCTGT 59.678 55.000 0.00 0.00 0.00 4.00
4871 5090 0.321671 TGAAGTTCGGAAGGAGCCTG 59.678 55.000 0.00 0.00 0.00 4.85
4872 5091 1.280457 ATGAAGTTCGGAAGGAGCCT 58.720 50.000 0.00 0.00 0.00 4.58
4873 5092 2.981859 TATGAAGTTCGGAAGGAGCC 57.018 50.000 0.00 0.00 0.00 4.70
4874 5093 4.000988 TGTTTATGAAGTTCGGAAGGAGC 58.999 43.478 0.00 0.00 0.00 4.70
4875 5094 5.874810 TGATGTTTATGAAGTTCGGAAGGAG 59.125 40.000 0.00 0.00 0.00 3.69
4876 5095 5.642063 GTGATGTTTATGAAGTTCGGAAGGA 59.358 40.000 0.00 0.00 0.00 3.36
4877 5096 5.163754 GGTGATGTTTATGAAGTTCGGAAGG 60.164 44.000 0.00 0.00 0.00 3.46
4878 5097 5.163754 GGGTGATGTTTATGAAGTTCGGAAG 60.164 44.000 0.00 0.00 0.00 3.46
4879 5098 4.698304 GGGTGATGTTTATGAAGTTCGGAA 59.302 41.667 0.00 0.00 0.00 4.30
4880 5099 4.258543 GGGTGATGTTTATGAAGTTCGGA 58.741 43.478 0.00 0.00 0.00 4.55
4881 5100 3.377172 GGGGTGATGTTTATGAAGTTCGG 59.623 47.826 0.00 0.00 0.00 4.30
4882 5101 3.377172 GGGGGTGATGTTTATGAAGTTCG 59.623 47.826 0.00 0.00 0.00 3.95
4883 5102 4.983671 GGGGGTGATGTTTATGAAGTTC 57.016 45.455 0.00 0.00 0.00 3.01
4907 5126 1.488390 CCACCCCCATGAAAATCAGG 58.512 55.000 0.00 0.00 0.00 3.86
4908 5127 1.488390 CCCACCCCCATGAAAATCAG 58.512 55.000 0.00 0.00 0.00 2.90
4909 5128 0.042431 CCCCACCCCCATGAAAATCA 59.958 55.000 0.00 0.00 0.00 2.57
4910 5129 1.337384 GCCCCACCCCCATGAAAATC 61.337 60.000 0.00 0.00 0.00 2.17
4911 5130 1.306911 GCCCCACCCCCATGAAAAT 60.307 57.895 0.00 0.00 0.00 1.82
4912 5131 2.121608 GCCCCACCCCCATGAAAA 59.878 61.111 0.00 0.00 0.00 2.29
4913 5132 4.004635 GGCCCCACCCCCATGAAA 62.005 66.667 0.00 0.00 0.00 2.69
4927 5146 2.235761 TGTTAGTTGGGGAGGGGCC 61.236 63.158 0.00 0.00 0.00 5.80
4928 5147 1.001269 GTGTTAGTTGGGGAGGGGC 60.001 63.158 0.00 0.00 0.00 5.80
4929 5148 1.689412 GGTGTTAGTTGGGGAGGGG 59.311 63.158 0.00 0.00 0.00 4.79
4930 5149 1.137594 TGGGTGTTAGTTGGGGAGGG 61.138 60.000 0.00 0.00 0.00 4.30
4931 5150 0.774908 TTGGGTGTTAGTTGGGGAGG 59.225 55.000 0.00 0.00 0.00 4.30
4932 5151 2.899303 ATTGGGTGTTAGTTGGGGAG 57.101 50.000 0.00 0.00 0.00 4.30
4933 5152 4.743705 TTAATTGGGTGTTAGTTGGGGA 57.256 40.909 0.00 0.00 0.00 4.81
4934 5153 5.810080 TTTTAATTGGGTGTTAGTTGGGG 57.190 39.130 0.00 0.00 0.00 4.96
4935 5154 5.992829 GGTTTTTAATTGGGTGTTAGTTGGG 59.007 40.000 0.00 0.00 0.00 4.12
4936 5155 5.692654 CGGTTTTTAATTGGGTGTTAGTTGG 59.307 40.000 0.00 0.00 0.00 3.77
4937 5156 5.176039 GCGGTTTTTAATTGGGTGTTAGTTG 59.824 40.000 0.00 0.00 0.00 3.16
4938 5157 5.291178 GCGGTTTTTAATTGGGTGTTAGTT 58.709 37.500 0.00 0.00 0.00 2.24
4939 5158 4.262121 GGCGGTTTTTAATTGGGTGTTAGT 60.262 41.667 0.00 0.00 0.00 2.24
4940 5159 4.239304 GGCGGTTTTTAATTGGGTGTTAG 58.761 43.478 0.00 0.00 0.00 2.34
4941 5160 3.640029 TGGCGGTTTTTAATTGGGTGTTA 59.360 39.130 0.00 0.00 0.00 2.41
4942 5161 2.434702 TGGCGGTTTTTAATTGGGTGTT 59.565 40.909 0.00 0.00 0.00 3.32
4943 5162 2.040178 TGGCGGTTTTTAATTGGGTGT 58.960 42.857 0.00 0.00 0.00 4.16
4944 5163 2.224066 TGTGGCGGTTTTTAATTGGGTG 60.224 45.455 0.00 0.00 0.00 4.61
4945 5164 2.040178 TGTGGCGGTTTTTAATTGGGT 58.960 42.857 0.00 0.00 0.00 4.51
4946 5165 2.821991 TGTGGCGGTTTTTAATTGGG 57.178 45.000 0.00 0.00 0.00 4.12
4947 5166 6.787085 TTTTATGTGGCGGTTTTTAATTGG 57.213 33.333 0.00 0.00 0.00 3.16
4948 5167 8.023050 TGATTTTATGTGGCGGTTTTTAATTG 57.977 30.769 0.00 0.00 0.00 2.32
4949 5168 8.608844 TTGATTTTATGTGGCGGTTTTTAATT 57.391 26.923 0.00 0.00 0.00 1.40
4950 5169 8.785329 ATTGATTTTATGTGGCGGTTTTTAAT 57.215 26.923 0.00 0.00 0.00 1.40
4951 5170 7.332182 GGATTGATTTTATGTGGCGGTTTTTAA 59.668 33.333 0.00 0.00 0.00 1.52
4952 5171 6.814146 GGATTGATTTTATGTGGCGGTTTTTA 59.186 34.615 0.00 0.00 0.00 1.52
4953 5172 5.641636 GGATTGATTTTATGTGGCGGTTTTT 59.358 36.000 0.00 0.00 0.00 1.94
4954 5173 5.175127 GGATTGATTTTATGTGGCGGTTTT 58.825 37.500 0.00 0.00 0.00 2.43
4955 5174 4.676723 CGGATTGATTTTATGTGGCGGTTT 60.677 41.667 0.00 0.00 0.00 3.27
4956 5175 3.181491 CGGATTGATTTTATGTGGCGGTT 60.181 43.478 0.00 0.00 0.00 4.44
4957 5176 2.357637 CGGATTGATTTTATGTGGCGGT 59.642 45.455 0.00 0.00 0.00 5.68
4958 5177 2.287547 CCGGATTGATTTTATGTGGCGG 60.288 50.000 0.00 0.00 0.00 6.13
4959 5178 2.357637 ACCGGATTGATTTTATGTGGCG 59.642 45.455 9.46 0.00 0.00 5.69
4960 5179 5.508200 TTACCGGATTGATTTTATGTGGC 57.492 39.130 9.46 0.00 0.00 5.01
4961 5180 7.095695 AGTTTACCGGATTGATTTTATGTGG 57.904 36.000 9.46 0.00 0.00 4.17
4962 5181 7.067008 AGGAGTTTACCGGATTGATTTTATGTG 59.933 37.037 9.46 0.00 34.73 3.21
4963 5182 7.067008 CAGGAGTTTACCGGATTGATTTTATGT 59.933 37.037 9.46 0.00 34.73 2.29
4964 5183 7.067008 ACAGGAGTTTACCGGATTGATTTTATG 59.933 37.037 9.46 0.00 34.73 1.90
4965 5184 7.116736 ACAGGAGTTTACCGGATTGATTTTAT 58.883 34.615 9.46 0.00 34.73 1.40
4966 5185 6.478129 ACAGGAGTTTACCGGATTGATTTTA 58.522 36.000 9.46 0.00 34.73 1.52
4967 5186 5.321927 ACAGGAGTTTACCGGATTGATTTT 58.678 37.500 9.46 0.00 34.73 1.82
4968 5187 4.918588 ACAGGAGTTTACCGGATTGATTT 58.081 39.130 9.46 0.00 34.73 2.17
4969 5188 4.569719 ACAGGAGTTTACCGGATTGATT 57.430 40.909 9.46 0.00 34.73 2.57
4970 5189 5.687166 TTACAGGAGTTTACCGGATTGAT 57.313 39.130 9.46 0.00 34.73 2.57
4971 5190 5.486735 TTTACAGGAGTTTACCGGATTGA 57.513 39.130 9.46 0.00 34.73 2.57
4972 5191 6.376177 GTTTTTACAGGAGTTTACCGGATTG 58.624 40.000 9.46 0.00 34.73 2.67
4973 5192 5.474532 GGTTTTTACAGGAGTTTACCGGATT 59.525 40.000 9.46 0.00 34.73 3.01
4974 5193 5.005740 GGTTTTTACAGGAGTTTACCGGAT 58.994 41.667 9.46 0.00 34.73 4.18
4975 5194 4.388485 GGTTTTTACAGGAGTTTACCGGA 58.612 43.478 9.46 0.00 34.73 5.14
4976 5195 3.503363 GGGTTTTTACAGGAGTTTACCGG 59.497 47.826 0.00 0.00 34.73 5.28
4977 5196 3.187022 CGGGTTTTTACAGGAGTTTACCG 59.813 47.826 0.00 0.00 34.73 4.02
4978 5197 4.136796 ACGGGTTTTTACAGGAGTTTACC 58.863 43.478 0.00 0.00 0.00 2.85
4979 5198 6.427853 ACATACGGGTTTTTACAGGAGTTTAC 59.572 38.462 0.00 0.00 0.00 2.01
4980 5199 6.532826 ACATACGGGTTTTTACAGGAGTTTA 58.467 36.000 0.00 0.00 0.00 2.01
4981 5200 5.379187 ACATACGGGTTTTTACAGGAGTTT 58.621 37.500 0.00 0.00 0.00 2.66
4982 5201 4.976864 ACATACGGGTTTTTACAGGAGTT 58.023 39.130 0.00 0.00 0.00 3.01
4983 5202 4.628963 ACATACGGGTTTTTACAGGAGT 57.371 40.909 0.00 0.00 0.00 3.85
4984 5203 6.423001 GCTATACATACGGGTTTTTACAGGAG 59.577 42.308 0.00 0.00 0.00 3.69
4985 5204 6.127111 TGCTATACATACGGGTTTTTACAGGA 60.127 38.462 0.00 0.00 0.00 3.86
4986 5205 6.050432 TGCTATACATACGGGTTTTTACAGG 58.950 40.000 0.00 0.00 0.00 4.00
4987 5206 7.724305 ATGCTATACATACGGGTTTTTACAG 57.276 36.000 0.00 0.00 37.17 2.74
4988 5207 7.553402 ACAATGCTATACATACGGGTTTTTACA 59.447 33.333 0.00 0.00 38.34 2.41
4989 5208 7.922837 ACAATGCTATACATACGGGTTTTTAC 58.077 34.615 0.00 0.00 38.34 2.01
4990 5209 8.399425 CAACAATGCTATACATACGGGTTTTTA 58.601 33.333 0.00 0.00 38.34 1.52
4991 5210 7.254852 CAACAATGCTATACATACGGGTTTTT 58.745 34.615 0.00 0.00 38.34 1.94
4992 5211 6.791303 CAACAATGCTATACATACGGGTTTT 58.209 36.000 0.00 0.00 38.34 2.43
4993 5212 6.371809 CAACAATGCTATACATACGGGTTT 57.628 37.500 0.00 0.00 38.34 3.27
5010 5229 7.176690 AGGTTACTACAGCAAAATAGCAACAAT 59.823 33.333 0.00 0.00 36.85 2.71
5012 5231 6.001460 AGGTTACTACAGCAAAATAGCAACA 58.999 36.000 0.00 0.00 36.85 3.33
5015 5234 4.394920 GCAGGTTACTACAGCAAAATAGCA 59.605 41.667 0.00 0.00 36.85 3.49
5027 5246 4.738740 CAGCGTGTATTAGCAGGTTACTAC 59.261 45.833 0.00 0.00 35.48 2.73
5035 5254 4.581493 CATGAAACAGCGTGTATTAGCAG 58.419 43.478 0.00 0.00 35.48 4.24
5040 5259 3.825308 CAAGCATGAAACAGCGTGTATT 58.175 40.909 0.00 0.00 35.88 1.89
5041 5260 2.414559 GCAAGCATGAAACAGCGTGTAT 60.415 45.455 0.00 0.00 41.32 2.29
5042 5261 1.069296 GCAAGCATGAAACAGCGTGTA 60.069 47.619 0.00 0.00 41.32 2.90
5044 5263 1.332180 CGCAAGCATGAAACAGCGTG 61.332 55.000 0.00 0.00 42.00 5.34
5045 5264 1.081906 CGCAAGCATGAAACAGCGT 60.082 52.632 0.00 0.00 40.25 5.07
5046 5265 0.791983 CTCGCAAGCATGAAACAGCG 60.792 55.000 0.00 4.46 45.79 5.18
5057 5276 3.062234 AGTTAGTAAATTCGCTCGCAAGC 59.938 43.478 0.00 0.00 45.56 4.01
5058 5277 4.842139 AGTTAGTAAATTCGCTCGCAAG 57.158 40.909 0.00 0.00 0.00 4.01
5059 5278 5.634439 TGTAAGTTAGTAAATTCGCTCGCAA 59.366 36.000 0.00 0.00 0.00 4.85
5061 5280 5.276254 CCTGTAAGTTAGTAAATTCGCTCGC 60.276 44.000 0.00 0.00 0.00 5.03
5075 5296 7.148086 GCATGGATGTTTTGATCCTGTAAGTTA 60.148 37.037 0.00 0.00 42.36 2.24
5082 5303 3.952323 AGAGCATGGATGTTTTGATCCTG 59.048 43.478 0.00 0.00 42.36 3.86
5088 5309 4.976224 TCATCAGAGCATGGATGTTTTG 57.024 40.909 8.83 0.00 41.26 2.44
5090 5311 7.002276 TGAATATCATCAGAGCATGGATGTTT 58.998 34.615 8.83 3.68 41.26 2.83
5096 5317 6.403746 GCAGATTGAATATCATCAGAGCATGG 60.404 42.308 0.00 0.00 0.00 3.66
5100 5321 6.348622 CCTTGCAGATTGAATATCATCAGAGC 60.349 42.308 0.00 0.00 0.00 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.