Multiple sequence alignment - TraesCS2B01G580700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G580700 chr2B 100.000 4517 0 0 1 4517 768107123 768102607 0.000000e+00 8342.0
1 TraesCS2B01G580700 chr2B 94.993 1498 74 1 2318 3815 768059005 768057509 0.000000e+00 2350.0
2 TraesCS2B01G580700 chr2B 94.057 1464 74 8 857 2308 768060445 768058983 0.000000e+00 2209.0
3 TraesCS2B01G580700 chr2B 86.009 1308 170 10 2347 3647 566391178 566389877 0.000000e+00 1389.0
4 TraesCS2B01G580700 chr2B 86.043 1304 170 9 2348 3647 687206446 687205151 0.000000e+00 1389.0
5 TraesCS2B01G580700 chr2B 91.253 766 65 2 1 764 622655127 622655892 0.000000e+00 1042.0
6 TraesCS2B01G580700 chr2B 76.389 1008 209 23 960 1954 566392548 566391557 2.410000e-142 516.0
7 TraesCS2B01G580700 chr2B 93.493 292 16 2 4220 4510 794343397 794343686 8.980000e-117 431.0
8 TraesCS2B01G580700 chr2A 94.975 3463 146 19 765 4214 757555971 757552524 0.000000e+00 5406.0
9 TraesCS2B01G580700 chr2A 86.141 1306 172 8 2347 3647 624942713 624941412 0.000000e+00 1400.0
10 TraesCS2B01G580700 chr2A 84.992 1326 185 9 2348 3667 624966639 624965322 0.000000e+00 1334.0
11 TraesCS2B01G580700 chr2A 78.413 1311 245 32 928 2226 711468192 711466908 0.000000e+00 819.0
12 TraesCS2B01G580700 chr2A 76.084 1292 258 29 958 2211 624944055 624942777 1.070000e-175 627.0
13 TraesCS2B01G580700 chr2A 92.123 292 20 2 4220 4510 763199067 763198778 4.210000e-110 409.0
14 TraesCS2B01G580700 chr2A 91.111 90 8 0 3866 3955 757552782 757552693 6.140000e-24 122.0
15 TraesCS2B01G580700 chr2A 86.885 61 8 0 4457 4517 105851621 105851681 8.110000e-08 69.4
16 TraesCS2B01G580700 chr2D 93.618 1567 79 14 765 2312 626595509 626593945 0.000000e+00 2320.0
17 TraesCS2B01G580700 chr2D 95.863 1402 58 0 2314 3715 626593971 626592570 0.000000e+00 2268.0
18 TraesCS2B01G580700 chr2D 86.154 1300 171 8 2347 3641 482349738 482348443 0.000000e+00 1395.0
19 TraesCS2B01G580700 chr2D 85.792 1281 174 6 2348 3624 482381231 482379955 0.000000e+00 1351.0
20 TraesCS2B01G580700 chr2D 90.767 769 68 3 1 767 12910043 12910810 0.000000e+00 1024.0
21 TraesCS2B01G580700 chr2D 78.582 1312 241 34 928 2226 572257531 572256247 0.000000e+00 830.0
22 TraesCS2B01G580700 chr2D 76.448 1295 249 34 958 2211 482351081 482349802 0.000000e+00 651.0
23 TraesCS2B01G580700 chr2D 94.805 154 7 1 3662 3815 626592585 626592433 5.840000e-59 239.0
24 TraesCS2B01G580700 chr6D 92.198 769 57 3 1 766 20126588 20125820 0.000000e+00 1085.0
25 TraesCS2B01G580700 chr3D 92.157 765 57 3 1 764 147470526 147469764 0.000000e+00 1077.0
26 TraesCS2B01G580700 chr7D 91.958 771 54 8 1 767 178124168 178124934 0.000000e+00 1074.0
27 TraesCS2B01G580700 chr7D 91.601 762 62 2 1 761 636812732 636813492 0.000000e+00 1051.0
28 TraesCS2B01G580700 chr7D 91.287 769 64 2 1 766 536979372 536980140 0.000000e+00 1046.0
29 TraesCS2B01G580700 chr6B 91.688 770 56 7 1 765 349470075 349469309 0.000000e+00 1061.0
30 TraesCS2B01G580700 chr1B 91.016 768 65 4 1 765 14499545 14498779 0.000000e+00 1033.0
31 TraesCS2B01G580700 chr3B 86.942 291 28 6 4220 4509 352245884 352246165 7.290000e-83 318.0
32 TraesCS2B01G580700 chr5D 86.747 249 27 4 4220 4467 330543702 330543459 5.760000e-69 272.0
33 TraesCS2B01G580700 chr4B 88.995 209 22 1 4220 4428 615768255 615768048 1.610000e-64 257.0
34 TraesCS2B01G580700 chr5A 88.525 61 6 1 4457 4517 492622731 492622790 6.270000e-09 73.1
35 TraesCS2B01G580700 chrUn 88.136 59 7 0 4457 4515 98448091 98448149 2.250000e-08 71.3
36 TraesCS2B01G580700 chr7B 87.302 63 7 1 4455 4517 684000622 684000561 2.250000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G580700 chr2B 768102607 768107123 4516 True 8342.0 8342 100.0000 1 4517 1 chr2B.!!$R2 4516
1 TraesCS2B01G580700 chr2B 768057509 768060445 2936 True 2279.5 2350 94.5250 857 3815 2 chr2B.!!$R4 2958
2 TraesCS2B01G580700 chr2B 687205151 687206446 1295 True 1389.0 1389 86.0430 2348 3647 1 chr2B.!!$R1 1299
3 TraesCS2B01G580700 chr2B 622655127 622655892 765 False 1042.0 1042 91.2530 1 764 1 chr2B.!!$F1 763
4 TraesCS2B01G580700 chr2B 566389877 566392548 2671 True 952.5 1389 81.1990 960 3647 2 chr2B.!!$R3 2687
5 TraesCS2B01G580700 chr2A 757552524 757555971 3447 True 2764.0 5406 93.0430 765 4214 2 chr2A.!!$R5 3449
6 TraesCS2B01G580700 chr2A 624965322 624966639 1317 True 1334.0 1334 84.9920 2348 3667 1 chr2A.!!$R1 1319
7 TraesCS2B01G580700 chr2A 624941412 624944055 2643 True 1013.5 1400 81.1125 958 3647 2 chr2A.!!$R4 2689
8 TraesCS2B01G580700 chr2A 711466908 711468192 1284 True 819.0 819 78.4130 928 2226 1 chr2A.!!$R2 1298
9 TraesCS2B01G580700 chr2D 626592433 626595509 3076 True 1609.0 2320 94.7620 765 3815 3 chr2D.!!$R4 3050
10 TraesCS2B01G580700 chr2D 482379955 482381231 1276 True 1351.0 1351 85.7920 2348 3624 1 chr2D.!!$R1 1276
11 TraesCS2B01G580700 chr2D 12910043 12910810 767 False 1024.0 1024 90.7670 1 767 1 chr2D.!!$F1 766
12 TraesCS2B01G580700 chr2D 482348443 482351081 2638 True 1023.0 1395 81.3010 958 3641 2 chr2D.!!$R3 2683
13 TraesCS2B01G580700 chr2D 572256247 572257531 1284 True 830.0 830 78.5820 928 2226 1 chr2D.!!$R2 1298
14 TraesCS2B01G580700 chr6D 20125820 20126588 768 True 1085.0 1085 92.1980 1 766 1 chr6D.!!$R1 765
15 TraesCS2B01G580700 chr3D 147469764 147470526 762 True 1077.0 1077 92.1570 1 764 1 chr3D.!!$R1 763
16 TraesCS2B01G580700 chr7D 178124168 178124934 766 False 1074.0 1074 91.9580 1 767 1 chr7D.!!$F1 766
17 TraesCS2B01G580700 chr7D 636812732 636813492 760 False 1051.0 1051 91.6010 1 761 1 chr7D.!!$F3 760
18 TraesCS2B01G580700 chr7D 536979372 536980140 768 False 1046.0 1046 91.2870 1 766 1 chr7D.!!$F2 765
19 TraesCS2B01G580700 chr6B 349469309 349470075 766 True 1061.0 1061 91.6880 1 765 1 chr6B.!!$R1 764
20 TraesCS2B01G580700 chr1B 14498779 14499545 766 True 1033.0 1033 91.0160 1 765 1 chr1B.!!$R1 764

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
117 118 0.249699 TCATCGTTGCAGGTCACGTT 60.250 50.000 8.38 0.00 0.00 3.99 F
130 132 0.533491 TCACGTTAACCTGATCGGGG 59.467 55.000 24.68 13.68 36.97 5.73 F
1056 1071 1.138247 GCTTGCAGCACAGTATGGC 59.862 57.895 0.00 0.00 43.62 4.40 F
1602 1623 1.202758 TGGAAGTTCAATCGGTGCAGT 60.203 47.619 5.01 0.00 0.00 4.40 F
2342 2426 0.535102 CTCTCTCTCTCTCTCGCCCC 60.535 65.000 0.00 0.00 0.00 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1208 1223 0.390472 GTCGAGGACCTCAAAGGCAG 60.390 60.0 21.49 3.25 39.63 4.85 R
1408 1423 0.835276 TCACGGTCCGAGATAGAGGA 59.165 55.0 20.51 0.00 0.00 3.71 R
2332 2416 0.040646 TTAGACCAAGGGGCGAGAGA 59.959 55.0 0.00 0.00 34.63 3.10 R
2770 2854 0.538287 AGGCAGCAACCCAAGAGTTC 60.538 55.0 0.00 0.00 0.00 3.01 R
4337 4462 0.242017 CCAAACCTTGCTGCTGCTAC 59.758 55.0 17.00 0.00 40.48 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.838568 GACGTGGCTTCCGGTGAAAC 61.839 60.000 0.00 0.00 0.00 2.78
75 76 3.838271 ACGATGGCGGCGTCTCAT 61.838 61.111 26.35 12.38 43.17 2.90
78 79 1.364171 GATGGCGGCGTCTCATACT 59.636 57.895 22.88 0.00 0.00 2.12
100 101 0.537188 GTTCCCTTCTCGAGGCATCA 59.463 55.000 13.56 0.00 44.85 3.07
117 118 0.249699 TCATCGTTGCAGGTCACGTT 60.250 50.000 8.38 0.00 0.00 3.99
130 132 0.533491 TCACGTTAACCTGATCGGGG 59.467 55.000 24.68 13.68 36.97 5.73
137 139 1.358152 AACCTGATCGGGGAGTTTCA 58.642 50.000 24.68 0.00 36.97 2.69
169 171 4.347876 CCTTGATATGGGTGTACTGGATCA 59.652 45.833 0.00 0.00 0.00 2.92
181 183 2.670939 ACTGGATCAGATGATGACGGA 58.329 47.619 0.00 0.00 41.91 4.69
303 306 4.451150 GATCTCGGTGGCGTGGCA 62.451 66.667 0.00 0.00 0.00 4.92
367 370 4.314440 GGGTGACGCTGTCTGGCA 62.314 66.667 9.49 0.00 33.15 4.92
450 453 1.607467 GATTGGTGGCAGGTGGCTT 60.607 57.895 5.03 0.00 44.01 4.35
496 499 4.373116 GGTTGAGGAGCACGCCGA 62.373 66.667 0.00 0.00 0.00 5.54
524 527 2.516225 GCCCATACCCGGCAAGTC 60.516 66.667 0.00 0.00 46.27 3.01
537 540 1.840635 GGCAAGTCTCCTAGTTGGGAT 59.159 52.381 0.00 0.00 38.71 3.85
540 543 3.198853 GCAAGTCTCCTAGTTGGGATCTT 59.801 47.826 0.00 0.00 38.71 2.40
562 565 8.431910 TCTTAGGTCTTAGATGTTAGGTTTGT 57.568 34.615 0.00 0.00 0.00 2.83
631 634 3.628008 TCAACTGGATAGGAGTAGCGAA 58.372 45.455 0.00 0.00 0.00 4.70
642 645 4.745649 AGGAGTAGCGAAAGATGTTGTAC 58.254 43.478 0.00 0.00 0.00 2.90
644 647 4.326548 GGAGTAGCGAAAGATGTTGTACAC 59.673 45.833 0.00 0.00 0.00 2.90
688 691 8.426489 ACTGTTGTATGACTTTGTAAGGTCTTA 58.574 33.333 8.11 4.09 34.01 2.10
988 1000 7.879677 TGACAGTGTCACATTTATTGATTCTCT 59.120 33.333 22.06 0.00 37.67 3.10
998 1010 8.153550 ACATTTATTGATTCTCTAGCGGAAGAT 58.846 33.333 4.74 2.64 0.00 2.40
1010 1022 1.333258 GCGGAAGATTATGCAAGCGTC 60.333 52.381 0.00 0.00 0.00 5.19
1011 1023 1.933181 CGGAAGATTATGCAAGCGTCA 59.067 47.619 0.00 0.00 31.25 4.35
1056 1071 1.138247 GCTTGCAGCACAGTATGGC 59.862 57.895 0.00 0.00 43.62 4.40
1155 1170 2.055042 AGGCTGTTCGCTCGGAGAT 61.055 57.895 9.69 0.00 39.13 2.75
1190 1205 1.971167 GCAAGGTCCACGATGGCAA 60.971 57.895 0.00 0.00 37.47 4.52
1198 1213 1.623311 TCCACGATGGCAAAGAGAAGA 59.377 47.619 0.00 0.00 37.47 2.87
1199 1214 2.005451 CCACGATGGCAAAGAGAAGAG 58.995 52.381 0.00 0.00 0.00 2.85
1208 1223 3.938334 GGCAAAGAGAAGAGATTCAGGAC 59.062 47.826 0.00 0.00 0.00 3.85
1269 1284 4.516698 ACAACTCGAGTGCTCAATTTCATT 59.483 37.500 20.85 0.00 0.00 2.57
1401 1416 2.108514 CACGGTCATCGGCTGCAAT 61.109 57.895 0.50 0.00 44.45 3.56
1428 1443 1.211212 TCCTCTATCTCGGACCGTGAA 59.789 52.381 21.36 10.64 33.31 3.18
1446 1461 2.125106 GGCACAGGCTACGAAGGG 60.125 66.667 0.00 0.00 40.87 3.95
1496 1517 1.833630 AGTTGATGGATCTTGCTCCGA 59.166 47.619 0.00 0.00 38.21 4.55
1602 1623 1.202758 TGGAAGTTCAATCGGTGCAGT 60.203 47.619 5.01 0.00 0.00 4.40
1692 1713 3.183130 CACAAATGATGGGCGGGTA 57.817 52.632 0.00 0.00 0.00 3.69
1975 2059 7.571025 TGTAGGGTCCCTTTATCTTATTTGAC 58.429 38.462 17.94 3.58 34.61 3.18
2086 2170 2.499693 TGCTGGAGAATACCGATGTTCA 59.500 45.455 0.00 0.00 0.00 3.18
2098 2182 1.660607 CGATGTTCATGTCGAGTTGGG 59.339 52.381 0.00 0.00 40.11 4.12
2154 2238 5.770162 ACCCAAATACAGGCTTCATAATAGC 59.230 40.000 0.00 0.00 37.91 2.97
2296 2380 7.676683 ACTATGTTCTACTCTCTCTCTCTCT 57.323 40.000 0.00 0.00 0.00 3.10
2299 2383 6.222038 TGTTCTACTCTCTCTCTCTCTCTC 57.778 45.833 0.00 0.00 0.00 3.20
2300 2384 5.958380 TGTTCTACTCTCTCTCTCTCTCTCT 59.042 44.000 0.00 0.00 0.00 3.10
2301 2385 6.096987 TGTTCTACTCTCTCTCTCTCTCTCTC 59.903 46.154 0.00 0.00 0.00 3.20
2302 2386 6.019656 TCTACTCTCTCTCTCTCTCTCTCT 57.980 45.833 0.00 0.00 0.00 3.10
2303 2387 6.065374 TCTACTCTCTCTCTCTCTCTCTCTC 58.935 48.000 0.00 0.00 0.00 3.20
2304 2388 4.877773 ACTCTCTCTCTCTCTCTCTCTCT 58.122 47.826 0.00 0.00 0.00 3.10
2305 2389 4.892934 ACTCTCTCTCTCTCTCTCTCTCTC 59.107 50.000 0.00 0.00 0.00 3.20
2306 2390 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
2307 2391 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2308 2392 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2309 2393 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2332 2416 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2334 2418 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2336 2420 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2338 2422 3.885901 TCTCTCTCTCTCTCTCTCTCTCG 59.114 52.174 0.00 0.00 0.00 4.04
2342 2426 0.535102 CTCTCTCTCTCTCTCGCCCC 60.535 65.000 0.00 0.00 0.00 5.80
2437 2521 8.756927 TGGTTATCATCATGATCTCTATCTTCC 58.243 37.037 2.48 1.29 38.26 3.46
2768 2852 4.375305 GCAAATCAATCACAAGAACGTTGC 60.375 41.667 5.00 0.00 0.00 4.17
2770 2854 3.607422 TCAATCACAAGAACGTTGCTG 57.393 42.857 5.00 4.98 0.00 4.41
2865 2949 2.241941 TGAGCTTATCCATGGCAGGAAA 59.758 45.455 6.96 0.00 41.92 3.13
2952 3036 4.058124 GCTTCCTACATTCATATGCGTCA 58.942 43.478 0.00 0.00 35.03 4.35
2954 3038 4.937201 TCCTACATTCATATGCGTCACT 57.063 40.909 0.00 0.00 35.03 3.41
3046 3130 7.510685 TGTCAGACTTTGGAGCCTCTATATTAT 59.489 37.037 1.31 0.00 0.00 1.28
3098 3182 1.812571 GGTTCAAGGTACATGTGGCTG 59.187 52.381 9.11 0.70 0.00 4.85
3163 3247 1.071041 GCGACGTGTACAGTTTTGGAC 60.071 52.381 0.00 0.00 38.73 4.02
3314 3398 2.508526 AGTGAAAGGCCAAGCAAGTAG 58.491 47.619 5.01 0.00 0.00 2.57
3335 3419 1.346068 GGAGTTGCTGAGAGGACTTGT 59.654 52.381 0.00 0.00 0.00 3.16
3372 3456 3.719268 TGCCTAGAAATGTGTGGTGAT 57.281 42.857 0.00 0.00 0.00 3.06
3391 3475 4.402155 GTGATAACAGGCCATCCATGAAAA 59.598 41.667 5.01 0.00 33.74 2.29
3399 3483 2.453080 CCATCCATGAAAAATGTCGCG 58.547 47.619 0.00 0.00 0.00 5.87
3437 3521 8.908786 AGATTGAGAAAACTTTCACTACATCA 57.091 30.769 5.07 0.00 39.61 3.07
3669 3757 9.174166 ACCTCAGTACCACATGTATTTTATTTC 57.826 33.333 0.00 0.00 0.00 2.17
3683 3808 9.048446 TGTATTTTATTTCGAGGTAGTATTGCC 57.952 33.333 0.00 0.00 0.00 4.52
3750 3875 8.806146 ACAACTCTATAGTTTGCAAATTCCAAT 58.194 29.630 16.21 4.51 43.60 3.16
3856 3981 8.405531 AGACCCAAATGAAATATACAATTCACG 58.594 33.333 0.00 0.00 38.29 4.35
3898 4023 2.614259 ACTATCTCCGATCCAAGGCAT 58.386 47.619 0.00 0.00 0.00 4.40
3999 4124 7.191918 TCTGATCCAAGGCAGATCCTATTATA 58.808 38.462 8.97 0.00 46.94 0.98
4186 4311 3.359033 AGCAATGCACATTCACACCTAT 58.641 40.909 8.35 0.00 0.00 2.57
4235 4360 6.617289 GCATGTGCAAGTACAAATCTAAAC 57.383 37.500 0.00 0.00 41.59 2.01
4236 4361 6.381801 GCATGTGCAAGTACAAATCTAAACT 58.618 36.000 0.00 0.00 41.59 2.66
4237 4362 6.306356 GCATGTGCAAGTACAAATCTAAACTG 59.694 38.462 0.00 0.00 41.59 3.16
4238 4363 7.584108 CATGTGCAAGTACAAATCTAAACTGA 58.416 34.615 0.00 0.00 33.69 3.41
4239 4364 7.561021 TGTGCAAGTACAAATCTAAACTGAA 57.439 32.000 0.00 0.00 0.00 3.02
4240 4365 7.414436 TGTGCAAGTACAAATCTAAACTGAAC 58.586 34.615 0.00 0.00 0.00 3.18
4241 4366 7.066404 TGTGCAAGTACAAATCTAAACTGAACA 59.934 33.333 0.00 0.00 0.00 3.18
4242 4367 7.913297 GTGCAAGTACAAATCTAAACTGAACAA 59.087 33.333 0.00 0.00 0.00 2.83
4243 4368 8.629158 TGCAAGTACAAATCTAAACTGAACAAT 58.371 29.630 0.00 0.00 0.00 2.71
4255 4380 9.225436 TCTAAACTGAACAATAACATATGTGCA 57.775 29.630 9.63 0.64 34.01 4.57
4256 4381 9.838975 CTAAACTGAACAATAACATATGTGCAA 57.161 29.630 9.63 0.00 34.74 4.08
4257 4382 8.746922 AAACTGAACAATAACATATGTGCAAG 57.253 30.769 9.63 3.26 34.74 4.01
4258 4383 7.452880 ACTGAACAATAACATATGTGCAAGT 57.547 32.000 9.63 3.90 34.74 3.16
4259 4384 8.560355 ACTGAACAATAACATATGTGCAAGTA 57.440 30.769 9.63 0.00 34.74 2.24
4260 4385 8.450964 ACTGAACAATAACATATGTGCAAGTAC 58.549 33.333 9.63 0.99 34.74 2.73
4261 4386 8.560355 TGAACAATAACATATGTGCAAGTACT 57.440 30.769 9.63 0.00 32.15 2.73
4262 4387 9.008965 TGAACAATAACATATGTGCAAGTACTT 57.991 29.630 9.63 1.12 32.15 2.24
4263 4388 9.277565 GAACAATAACATATGTGCAAGTACTTG 57.722 33.333 27.85 27.85 43.14 3.16
4264 4389 8.335532 ACAATAACATATGTGCAAGTACTTGT 57.664 30.769 30.90 17.17 42.31 3.16
4265 4390 9.443323 ACAATAACATATGTGCAAGTACTTGTA 57.557 29.630 30.90 26.19 42.31 2.41
4268 4393 7.737972 AACATATGTGCAAGTACTTGTAACA 57.262 32.000 30.99 30.99 42.31 2.41
4269 4394 7.921786 ACATATGTGCAAGTACTTGTAACAT 57.078 32.000 35.30 35.30 44.38 2.71
4270 4395 7.974675 ACATATGTGCAAGTACTTGTAACATC 58.025 34.615 36.18 23.54 42.88 3.06
4271 4396 7.824289 ACATATGTGCAAGTACTTGTAACATCT 59.176 33.333 36.18 29.83 42.88 2.90
4272 4397 6.727824 ATGTGCAAGTACTTGTAACATCTC 57.272 37.500 31.94 20.13 41.57 2.75
4273 4398 5.606505 TGTGCAAGTACTTGTAACATCTCA 58.393 37.500 30.90 19.05 42.31 3.27
4274 4399 6.230472 TGTGCAAGTACTTGTAACATCTCAT 58.770 36.000 30.90 0.00 42.31 2.90
4275 4400 6.368791 TGTGCAAGTACTTGTAACATCTCATC 59.631 38.462 30.90 15.21 42.31 2.92
4276 4401 6.368791 GTGCAAGTACTTGTAACATCTCATCA 59.631 38.462 30.90 16.03 42.31 3.07
4277 4402 7.065085 GTGCAAGTACTTGTAACATCTCATCAT 59.935 37.037 30.90 0.00 42.31 2.45
4278 4403 7.607607 TGCAAGTACTTGTAACATCTCATCATT 59.392 33.333 30.90 0.00 42.31 2.57
4279 4404 9.098355 GCAAGTACTTGTAACATCTCATCATTA 57.902 33.333 30.90 0.00 42.31 1.90
4282 4407 9.587772 AGTACTTGTAACATCTCATCATTACAC 57.412 33.333 0.00 0.00 37.28 2.90
4283 4408 9.587772 GTACTTGTAACATCTCATCATTACACT 57.412 33.333 0.00 0.00 37.28 3.55
4284 4409 8.484641 ACTTGTAACATCTCATCATTACACTG 57.515 34.615 0.00 0.00 37.28 3.66
4285 4410 8.097038 ACTTGTAACATCTCATCATTACACTGT 58.903 33.333 0.00 0.00 37.28 3.55
4286 4411 8.479313 TTGTAACATCTCATCATTACACTGTC 57.521 34.615 0.00 0.00 37.28 3.51
4287 4412 7.840931 TGTAACATCTCATCATTACACTGTCT 58.159 34.615 0.00 0.00 33.67 3.41
4288 4413 8.314021 TGTAACATCTCATCATTACACTGTCTT 58.686 33.333 0.00 0.00 33.67 3.01
4289 4414 9.803315 GTAACATCTCATCATTACACTGTCTTA 57.197 33.333 0.00 0.00 0.00 2.10
4290 4415 8.709386 AACATCTCATCATTACACTGTCTTAC 57.291 34.615 0.00 0.00 0.00 2.34
4291 4416 7.840931 ACATCTCATCATTACACTGTCTTACA 58.159 34.615 0.00 0.00 0.00 2.41
4292 4417 7.761704 ACATCTCATCATTACACTGTCTTACAC 59.238 37.037 0.00 0.00 0.00 2.90
4293 4418 7.227049 TCTCATCATTACACTGTCTTACACA 57.773 36.000 0.00 0.00 0.00 3.72
4294 4419 7.840931 TCTCATCATTACACTGTCTTACACAT 58.159 34.615 0.00 0.00 33.23 3.21
4295 4420 7.976175 TCTCATCATTACACTGTCTTACACATC 59.024 37.037 0.00 0.00 33.23 3.06
4296 4421 7.840931 TCATCATTACACTGTCTTACACATCT 58.159 34.615 0.00 0.00 33.23 2.90
4297 4422 7.976175 TCATCATTACACTGTCTTACACATCTC 59.024 37.037 0.00 0.00 33.23 2.75
4298 4423 7.227049 TCATTACACTGTCTTACACATCTCA 57.773 36.000 0.00 0.00 33.23 3.27
4299 4424 7.666623 TCATTACACTGTCTTACACATCTCAA 58.333 34.615 0.00 0.00 33.23 3.02
4300 4425 8.314021 TCATTACACTGTCTTACACATCTCAAT 58.686 33.333 0.00 0.00 33.23 2.57
4301 4426 9.586435 CATTACACTGTCTTACACATCTCAATA 57.414 33.333 0.00 0.00 33.23 1.90
4302 4427 8.981724 TTACACTGTCTTACACATCTCAATAC 57.018 34.615 0.00 0.00 33.23 1.89
4303 4428 7.233389 ACACTGTCTTACACATCTCAATACT 57.767 36.000 0.00 0.00 33.23 2.12
4304 4429 8.349568 ACACTGTCTTACACATCTCAATACTA 57.650 34.615 0.00 0.00 33.23 1.82
4305 4430 8.244802 ACACTGTCTTACACATCTCAATACTAC 58.755 37.037 0.00 0.00 33.23 2.73
4306 4431 7.702772 CACTGTCTTACACATCTCAATACTACC 59.297 40.741 0.00 0.00 33.23 3.18
4307 4432 6.792326 TGTCTTACACATCTCAATACTACCG 58.208 40.000 0.00 0.00 0.00 4.02
4308 4433 6.600427 TGTCTTACACATCTCAATACTACCGA 59.400 38.462 0.00 0.00 0.00 4.69
4309 4434 7.121611 TGTCTTACACATCTCAATACTACCGAA 59.878 37.037 0.00 0.00 0.00 4.30
4310 4435 7.972277 GTCTTACACATCTCAATACTACCGAAA 59.028 37.037 0.00 0.00 0.00 3.46
4311 4436 8.692710 TCTTACACATCTCAATACTACCGAAAT 58.307 33.333 0.00 0.00 0.00 2.17
4312 4437 9.314321 CTTACACATCTCAATACTACCGAAATT 57.686 33.333 0.00 0.00 0.00 1.82
4313 4438 9.661563 TTACACATCTCAATACTACCGAAATTT 57.338 29.630 0.00 0.00 0.00 1.82
4314 4439 8.197988 ACACATCTCAATACTACCGAAATTTC 57.802 34.615 8.20 8.20 0.00 2.17
4315 4440 7.822334 ACACATCTCAATACTACCGAAATTTCA 59.178 33.333 17.99 0.00 0.00 2.69
4316 4441 8.664798 CACATCTCAATACTACCGAAATTTCAA 58.335 33.333 17.99 2.31 0.00 2.69
4317 4442 9.226606 ACATCTCAATACTACCGAAATTTCAAA 57.773 29.630 17.99 1.97 0.00 2.69
4318 4443 9.708222 CATCTCAATACTACCGAAATTTCAAAG 57.292 33.333 17.99 12.89 0.00 2.77
4319 4444 9.667107 ATCTCAATACTACCGAAATTTCAAAGA 57.333 29.630 17.99 5.54 0.00 2.52
4320 4445 9.151471 TCTCAATACTACCGAAATTTCAAAGAG 57.849 33.333 17.99 10.87 0.00 2.85
4321 4446 9.151471 CTCAATACTACCGAAATTTCAAAGAGA 57.849 33.333 17.99 6.25 0.00 3.10
4322 4447 9.496873 TCAATACTACCGAAATTTCAAAGAGAA 57.503 29.630 17.99 0.00 0.00 2.87
4335 4460 7.559590 TTTCAAAGAGAAAGAGACAAAGAGG 57.440 36.000 0.00 0.00 41.17 3.69
4336 4461 6.485830 TCAAAGAGAAAGAGACAAAGAGGA 57.514 37.500 0.00 0.00 0.00 3.71
4337 4462 6.520272 TCAAAGAGAAAGAGACAAAGAGGAG 58.480 40.000 0.00 0.00 0.00 3.69
4338 4463 6.098982 TCAAAGAGAAAGAGACAAAGAGGAGT 59.901 38.462 0.00 0.00 0.00 3.85
4339 4464 7.287927 TCAAAGAGAAAGAGACAAAGAGGAGTA 59.712 37.037 0.00 0.00 0.00 2.59
4340 4465 6.834168 AGAGAAAGAGACAAAGAGGAGTAG 57.166 41.667 0.00 0.00 0.00 2.57
4341 4466 5.185056 AGAGAAAGAGACAAAGAGGAGTAGC 59.815 44.000 0.00 0.00 0.00 3.58
4342 4467 4.835615 AGAAAGAGACAAAGAGGAGTAGCA 59.164 41.667 0.00 0.00 0.00 3.49
4343 4468 4.799564 AAGAGACAAAGAGGAGTAGCAG 57.200 45.455 0.00 0.00 0.00 4.24
4344 4469 2.495669 AGAGACAAAGAGGAGTAGCAGC 59.504 50.000 0.00 0.00 0.00 5.25
4345 4470 2.232452 GAGACAAAGAGGAGTAGCAGCA 59.768 50.000 0.00 0.00 0.00 4.41
4346 4471 2.233431 AGACAAAGAGGAGTAGCAGCAG 59.767 50.000 0.00 0.00 0.00 4.24
4347 4472 1.338579 ACAAAGAGGAGTAGCAGCAGC 60.339 52.381 0.00 0.00 42.56 5.25
4348 4473 0.979665 AAAGAGGAGTAGCAGCAGCA 59.020 50.000 3.17 0.00 45.49 4.41
4349 4474 0.979665 AAGAGGAGTAGCAGCAGCAA 59.020 50.000 3.17 0.00 45.49 3.91
4350 4475 0.536260 AGAGGAGTAGCAGCAGCAAG 59.464 55.000 3.17 0.00 45.49 4.01
4351 4476 0.461693 GAGGAGTAGCAGCAGCAAGG 60.462 60.000 3.17 0.00 45.49 3.61
4352 4477 1.197430 AGGAGTAGCAGCAGCAAGGT 61.197 55.000 3.17 0.00 45.49 3.50
4353 4478 0.322008 GGAGTAGCAGCAGCAAGGTT 60.322 55.000 3.17 0.00 45.49 3.50
4354 4479 1.528129 GAGTAGCAGCAGCAAGGTTT 58.472 50.000 3.17 0.00 45.49 3.27
4355 4480 1.198637 GAGTAGCAGCAGCAAGGTTTG 59.801 52.381 3.17 0.00 45.49 2.93
4356 4481 0.242017 GTAGCAGCAGCAAGGTTTGG 59.758 55.000 3.17 0.00 45.49 3.28
4357 4482 0.895100 TAGCAGCAGCAAGGTTTGGG 60.895 55.000 3.17 0.00 45.49 4.12
4358 4483 3.053828 CAGCAGCAAGGTTTGGGG 58.946 61.111 0.00 0.00 0.00 4.96
4359 4484 2.203684 AGCAGCAAGGTTTGGGGG 60.204 61.111 0.00 0.00 0.00 5.40
4360 4485 2.203625 GCAGCAAGGTTTGGGGGA 60.204 61.111 0.00 0.00 0.00 4.81
4361 4486 2.278330 GCAGCAAGGTTTGGGGGAG 61.278 63.158 0.00 0.00 0.00 4.30
4362 4487 1.460255 CAGCAAGGTTTGGGGGAGA 59.540 57.895 0.00 0.00 0.00 3.71
4363 4488 0.178964 CAGCAAGGTTTGGGGGAGAA 60.179 55.000 0.00 0.00 0.00 2.87
4364 4489 0.560688 AGCAAGGTTTGGGGGAGAAA 59.439 50.000 0.00 0.00 0.00 2.52
4365 4490 1.062505 AGCAAGGTTTGGGGGAGAAAA 60.063 47.619 0.00 0.00 0.00 2.29
4366 4491 1.344438 GCAAGGTTTGGGGGAGAAAAG 59.656 52.381 0.00 0.00 0.00 2.27
4367 4492 1.970640 CAAGGTTTGGGGGAGAAAAGG 59.029 52.381 0.00 0.00 0.00 3.11
4368 4493 1.541275 AGGTTTGGGGGAGAAAAGGA 58.459 50.000 0.00 0.00 0.00 3.36
4369 4494 1.429299 AGGTTTGGGGGAGAAAAGGAG 59.571 52.381 0.00 0.00 0.00 3.69
4370 4495 1.257743 GTTTGGGGGAGAAAAGGAGC 58.742 55.000 0.00 0.00 0.00 4.70
4371 4496 0.856982 TTTGGGGGAGAAAAGGAGCA 59.143 50.000 0.00 0.00 0.00 4.26
4372 4497 1.084018 TTGGGGGAGAAAAGGAGCAT 58.916 50.000 0.00 0.00 0.00 3.79
4373 4498 0.625849 TGGGGGAGAAAAGGAGCATC 59.374 55.000 0.00 0.00 0.00 3.91
4374 4499 0.625849 GGGGGAGAAAAGGAGCATCA 59.374 55.000 0.00 0.00 36.25 3.07
4375 4500 1.409381 GGGGGAGAAAAGGAGCATCAG 60.409 57.143 0.00 0.00 36.25 2.90
4376 4501 1.283321 GGGGAGAAAAGGAGCATCAGT 59.717 52.381 0.00 0.00 36.25 3.41
4377 4502 2.291217 GGGGAGAAAAGGAGCATCAGTT 60.291 50.000 0.00 0.00 36.25 3.16
4378 4503 3.425659 GGGAGAAAAGGAGCATCAGTTT 58.574 45.455 0.00 0.00 36.25 2.66
4379 4504 3.829026 GGGAGAAAAGGAGCATCAGTTTT 59.171 43.478 0.00 0.00 36.05 2.43
4380 4505 4.321527 GGGAGAAAAGGAGCATCAGTTTTG 60.322 45.833 0.00 0.00 34.24 2.44
4381 4506 4.279420 GGAGAAAAGGAGCATCAGTTTTGT 59.721 41.667 0.00 0.00 34.24 2.83
4382 4507 5.192327 AGAAAAGGAGCATCAGTTTTGTG 57.808 39.130 0.00 0.00 34.24 3.33
4383 4508 4.038402 AGAAAAGGAGCATCAGTTTTGTGG 59.962 41.667 0.00 0.00 34.24 4.17
4384 4509 2.957402 AGGAGCATCAGTTTTGTGGA 57.043 45.000 0.00 0.00 36.25 4.02
4385 4510 2.787994 AGGAGCATCAGTTTTGTGGAG 58.212 47.619 0.00 0.00 36.25 3.86
4386 4511 2.373169 AGGAGCATCAGTTTTGTGGAGA 59.627 45.455 0.00 0.00 36.25 3.71
4387 4512 2.746362 GGAGCATCAGTTTTGTGGAGAG 59.254 50.000 0.00 0.00 36.25 3.20
4388 4513 3.557898 GGAGCATCAGTTTTGTGGAGAGA 60.558 47.826 0.00 0.00 36.25 3.10
4389 4514 3.672808 AGCATCAGTTTTGTGGAGAGAG 58.327 45.455 0.00 0.00 0.00 3.20
4390 4515 2.746362 GCATCAGTTTTGTGGAGAGAGG 59.254 50.000 0.00 0.00 0.00 3.69
4391 4516 3.557898 GCATCAGTTTTGTGGAGAGAGGA 60.558 47.826 0.00 0.00 0.00 3.71
4392 4517 4.841422 CATCAGTTTTGTGGAGAGAGGAT 58.159 43.478 0.00 0.00 0.00 3.24
4393 4518 4.543590 TCAGTTTTGTGGAGAGAGGATC 57.456 45.455 0.00 0.00 0.00 3.36
4406 4531 1.786937 GAGGATCTTCAGCAGAGGGA 58.213 55.000 0.00 0.00 33.87 4.20
4407 4532 1.688197 GAGGATCTTCAGCAGAGGGAG 59.312 57.143 0.00 0.00 33.87 4.30
4408 4533 0.758123 GGATCTTCAGCAGAGGGAGG 59.242 60.000 0.00 0.00 33.87 4.30
4409 4534 1.494960 GATCTTCAGCAGAGGGAGGT 58.505 55.000 0.00 0.00 33.87 3.85
4410 4535 1.836802 GATCTTCAGCAGAGGGAGGTT 59.163 52.381 0.00 0.00 33.87 3.50
4411 4536 0.979665 TCTTCAGCAGAGGGAGGTTG 59.020 55.000 0.00 0.00 0.00 3.77
4412 4537 0.979665 CTTCAGCAGAGGGAGGTTGA 59.020 55.000 0.00 0.00 0.00 3.18
4413 4538 1.349026 CTTCAGCAGAGGGAGGTTGAA 59.651 52.381 0.00 0.00 33.96 2.69
4414 4539 1.434188 TCAGCAGAGGGAGGTTGAAA 58.566 50.000 0.00 0.00 0.00 2.69
4415 4540 1.349026 TCAGCAGAGGGAGGTTGAAAG 59.651 52.381 0.00 0.00 0.00 2.62
4416 4541 1.349026 CAGCAGAGGGAGGTTGAAAGA 59.651 52.381 0.00 0.00 0.00 2.52
4417 4542 1.627834 AGCAGAGGGAGGTTGAAAGAG 59.372 52.381 0.00 0.00 0.00 2.85
4418 4543 1.625818 GCAGAGGGAGGTTGAAAGAGA 59.374 52.381 0.00 0.00 0.00 3.10
4419 4544 2.354604 GCAGAGGGAGGTTGAAAGAGAG 60.355 54.545 0.00 0.00 0.00 3.20
4420 4545 3.169099 CAGAGGGAGGTTGAAAGAGAGA 58.831 50.000 0.00 0.00 0.00 3.10
4421 4546 3.195396 CAGAGGGAGGTTGAAAGAGAGAG 59.805 52.174 0.00 0.00 0.00 3.20
4422 4547 1.905894 AGGGAGGTTGAAAGAGAGAGC 59.094 52.381 0.00 0.00 0.00 4.09
4423 4548 1.625818 GGGAGGTTGAAAGAGAGAGCA 59.374 52.381 0.00 0.00 0.00 4.26
4424 4549 2.354604 GGGAGGTTGAAAGAGAGAGCAG 60.355 54.545 0.00 0.00 0.00 4.24
4425 4550 2.345876 GAGGTTGAAAGAGAGAGCAGC 58.654 52.381 0.00 0.00 0.00 5.25
4426 4551 1.696336 AGGTTGAAAGAGAGAGCAGCA 59.304 47.619 0.00 0.00 0.00 4.41
4427 4552 2.075338 GGTTGAAAGAGAGAGCAGCAG 58.925 52.381 0.00 0.00 0.00 4.24
4428 4553 1.464219 GTTGAAAGAGAGAGCAGCAGC 59.536 52.381 0.00 0.00 42.56 5.25
4429 4554 0.683412 TGAAAGAGAGAGCAGCAGCA 59.317 50.000 3.17 0.00 45.49 4.41
4430 4555 1.071228 TGAAAGAGAGAGCAGCAGCAA 59.929 47.619 3.17 0.00 45.49 3.91
4431 4556 1.733360 GAAAGAGAGAGCAGCAGCAAG 59.267 52.381 3.17 0.00 45.49 4.01
4432 4557 0.686224 AAGAGAGAGCAGCAGCAAGT 59.314 50.000 3.17 0.00 45.49 3.16
4433 4558 0.686224 AGAGAGAGCAGCAGCAAGTT 59.314 50.000 3.17 0.00 45.49 2.66
4434 4559 1.077915 GAGAGAGCAGCAGCAAGTTC 58.922 55.000 3.17 0.00 45.49 3.01
4435 4560 0.395686 AGAGAGCAGCAGCAAGTTCA 59.604 50.000 3.17 0.00 45.49 3.18
4436 4561 0.797542 GAGAGCAGCAGCAAGTTCAG 59.202 55.000 3.17 0.00 45.49 3.02
4437 4562 1.209640 GAGCAGCAGCAAGTTCAGC 59.790 57.895 3.17 0.00 45.49 4.26
4438 4563 1.512996 GAGCAGCAGCAAGTTCAGCA 61.513 55.000 3.17 0.00 45.49 4.41
4439 4564 1.081376 GCAGCAGCAAGTTCAGCAG 60.081 57.895 0.00 0.00 41.58 4.24
4440 4565 1.512996 GCAGCAGCAAGTTCAGCAGA 61.513 55.000 0.00 0.00 41.58 4.26
4441 4566 0.517755 CAGCAGCAAGTTCAGCAGAG 59.482 55.000 0.00 0.00 0.00 3.35
4442 4567 0.605860 AGCAGCAAGTTCAGCAGAGG 60.606 55.000 0.00 0.00 0.00 3.69
4443 4568 0.604780 GCAGCAAGTTCAGCAGAGGA 60.605 55.000 0.00 0.00 0.00 3.71
4444 4569 1.888215 CAGCAAGTTCAGCAGAGGAA 58.112 50.000 0.00 0.00 0.00 3.36
4445 4570 1.805345 CAGCAAGTTCAGCAGAGGAAG 59.195 52.381 0.00 0.00 0.00 3.46
4446 4571 1.163554 GCAAGTTCAGCAGAGGAAGG 58.836 55.000 0.00 0.00 0.00 3.46
4447 4572 1.271054 GCAAGTTCAGCAGAGGAAGGA 60.271 52.381 0.00 0.00 0.00 3.36
4448 4573 2.697654 CAAGTTCAGCAGAGGAAGGAG 58.302 52.381 0.00 0.00 0.00 3.69
4449 4574 0.612744 AGTTCAGCAGAGGAAGGAGC 59.387 55.000 0.00 0.00 0.00 4.70
4450 4575 0.322975 GTTCAGCAGAGGAAGGAGCA 59.677 55.000 0.00 0.00 0.00 4.26
4451 4576 1.059098 TTCAGCAGAGGAAGGAGCAA 58.941 50.000 0.00 0.00 0.00 3.91
4452 4577 0.322975 TCAGCAGAGGAAGGAGCAAC 59.677 55.000 0.00 0.00 0.00 4.17
4453 4578 0.035881 CAGCAGAGGAAGGAGCAACA 59.964 55.000 0.00 0.00 0.00 3.33
4454 4579 0.767375 AGCAGAGGAAGGAGCAACAA 59.233 50.000 0.00 0.00 0.00 2.83
4455 4580 0.877743 GCAGAGGAAGGAGCAACAAC 59.122 55.000 0.00 0.00 0.00 3.32
4456 4581 1.151668 CAGAGGAAGGAGCAACAACG 58.848 55.000 0.00 0.00 0.00 4.10
4457 4582 0.035458 AGAGGAAGGAGCAACAACGG 59.965 55.000 0.00 0.00 0.00 4.44
4458 4583 0.955919 GAGGAAGGAGCAACAACGGG 60.956 60.000 0.00 0.00 0.00 5.28
4459 4584 1.971695 GGAAGGAGCAACAACGGGG 60.972 63.158 0.00 0.00 0.00 5.73
4460 4585 1.971695 GAAGGAGCAACAACGGGGG 60.972 63.158 0.00 0.00 0.00 5.40
4461 4586 2.406002 GAAGGAGCAACAACGGGGGA 62.406 60.000 0.00 0.00 0.00 4.81
4462 4587 2.002018 AAGGAGCAACAACGGGGGAA 62.002 55.000 0.00 0.00 0.00 3.97
4463 4588 1.971695 GGAGCAACAACGGGGGAAG 60.972 63.158 0.00 0.00 0.00 3.46
4464 4589 1.072505 GAGCAACAACGGGGGAAGA 59.927 57.895 0.00 0.00 0.00 2.87
4465 4590 0.955919 GAGCAACAACGGGGGAAGAG 60.956 60.000 0.00 0.00 0.00 2.85
4466 4591 1.072505 GCAACAACGGGGGAAGAGA 59.927 57.895 0.00 0.00 0.00 3.10
4467 4592 0.536460 GCAACAACGGGGGAAGAGAA 60.536 55.000 0.00 0.00 0.00 2.87
4468 4593 1.886655 GCAACAACGGGGGAAGAGAAT 60.887 52.381 0.00 0.00 0.00 2.40
4469 4594 1.812571 CAACAACGGGGGAAGAGAATG 59.187 52.381 0.00 0.00 0.00 2.67
4470 4595 0.328258 ACAACGGGGGAAGAGAATGG 59.672 55.000 0.00 0.00 0.00 3.16
4471 4596 0.328258 CAACGGGGGAAGAGAATGGT 59.672 55.000 0.00 0.00 0.00 3.55
4472 4597 0.328258 AACGGGGGAAGAGAATGGTG 59.672 55.000 0.00 0.00 0.00 4.17
4473 4598 0.546747 ACGGGGGAAGAGAATGGTGA 60.547 55.000 0.00 0.00 0.00 4.02
4474 4599 0.179000 CGGGGGAAGAGAATGGTGAG 59.821 60.000 0.00 0.00 0.00 3.51
4475 4600 0.548510 GGGGGAAGAGAATGGTGAGG 59.451 60.000 0.00 0.00 0.00 3.86
4476 4601 1.584724 GGGGAAGAGAATGGTGAGGA 58.415 55.000 0.00 0.00 0.00 3.71
4477 4602 2.131023 GGGGAAGAGAATGGTGAGGAT 58.869 52.381 0.00 0.00 0.00 3.24
4478 4603 2.158696 GGGGAAGAGAATGGTGAGGATG 60.159 54.545 0.00 0.00 0.00 3.51
4479 4604 2.570135 GGAAGAGAATGGTGAGGATGC 58.430 52.381 0.00 0.00 0.00 3.91
4480 4605 2.092753 GGAAGAGAATGGTGAGGATGCA 60.093 50.000 0.00 0.00 0.00 3.96
4481 4606 2.706339 AGAGAATGGTGAGGATGCAC 57.294 50.000 0.00 0.00 38.05 4.57
4487 4612 2.982130 GTGAGGATGCACCGACCT 59.018 61.111 0.00 0.00 44.74 3.85
4488 4613 1.448540 GTGAGGATGCACCGACCTG 60.449 63.158 8.04 0.00 44.74 4.00
4489 4614 2.512515 GAGGATGCACCGACCTGC 60.513 66.667 8.04 0.00 44.74 4.85
4490 4615 4.101448 AGGATGCACCGACCTGCC 62.101 66.667 0.00 0.00 44.74 4.85
4492 4617 4.451150 GATGCACCGACCTGCCGA 62.451 66.667 0.00 0.00 36.21 5.54
4493 4618 4.457496 ATGCACCGACCTGCCGAG 62.457 66.667 0.00 0.00 36.21 4.63
4496 4621 4.803426 CACCGACCTGCCGAGCTC 62.803 72.222 2.73 2.73 0.00 4.09
4499 4624 4.504916 CGACCTGCCGAGCTCCAG 62.505 72.222 8.47 10.46 0.00 3.86
4500 4625 4.828925 GACCTGCCGAGCTCCAGC 62.829 72.222 14.91 14.91 42.49 4.85
4503 4628 4.834453 CTGCCGAGCTCCAGCCAG 62.834 72.222 18.08 10.86 43.38 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.812922 GACCGCAGTCAGGCATGAG 60.813 63.158 0.00 0.00 42.99 2.90
75 76 2.089980 CCTCGAGAAGGGAACGAAGTA 58.910 52.381 15.71 0.00 40.63 2.24
78 79 1.183030 TGCCTCGAGAAGGGAACGAA 61.183 55.000 15.71 0.00 43.57 3.85
100 101 1.796459 GTTAACGTGACCTGCAACGAT 59.204 47.619 15.09 6.19 0.00 3.73
117 118 2.500098 CTGAAACTCCCCGATCAGGTTA 59.500 50.000 0.00 0.00 36.50 2.85
149 151 4.814967 TCTGATCCAGTACACCCATATCA 58.185 43.478 0.00 0.00 32.61 2.15
153 155 3.657610 TCATCTGATCCAGTACACCCAT 58.342 45.455 0.00 0.00 32.61 4.00
159 161 3.570125 TCCGTCATCATCTGATCCAGTAC 59.430 47.826 0.00 0.00 35.97 2.73
163 165 1.342496 GCTCCGTCATCATCTGATCCA 59.658 52.381 0.00 0.00 35.97 3.41
169 171 0.387202 CGAAGGCTCCGTCATCATCT 59.613 55.000 2.98 0.00 0.00 2.90
303 306 1.296715 GGCACCGAGTCTCCATTGT 59.703 57.895 0.00 0.00 0.00 2.71
450 453 3.214123 CGGGTATGAGGTCGCCGA 61.214 66.667 0.00 0.00 0.00 5.54
456 459 3.480133 GCCTGCCGGGTATGAGGT 61.480 66.667 2.18 0.00 37.43 3.85
524 527 4.810345 AGACCTAAGATCCCAACTAGGAG 58.190 47.826 0.00 0.00 39.95 3.69
537 540 8.431910 ACAAACCTAACATCTAAGACCTAAGA 57.568 34.615 0.00 0.00 0.00 2.10
540 543 7.578955 GCAGACAAACCTAACATCTAAGACCTA 60.579 40.741 0.00 0.00 0.00 3.08
562 565 1.334160 TACCAAACAGACCTCGCAGA 58.666 50.000 0.00 0.00 0.00 4.26
631 634 2.489971 CCACCGTGTGTACAACATCTT 58.510 47.619 0.00 0.00 41.97 2.40
642 645 1.878953 AAGACTAAAGCCACCGTGTG 58.121 50.000 0.00 0.00 0.00 3.82
644 647 2.993899 CAGTAAGACTAAAGCCACCGTG 59.006 50.000 0.00 0.00 0.00 4.94
766 772 7.676683 ACATCGGCTTATAAGTATCCCATAT 57.323 36.000 13.91 1.37 0.00 1.78
767 773 7.490657 AACATCGGCTTATAAGTATCCCATA 57.509 36.000 13.91 0.00 0.00 2.74
768 774 6.374417 AACATCGGCTTATAAGTATCCCAT 57.626 37.500 13.91 0.00 0.00 4.00
769 775 5.818678 AACATCGGCTTATAAGTATCCCA 57.181 39.130 13.91 0.00 0.00 4.37
770 776 6.148976 GGAAAACATCGGCTTATAAGTATCCC 59.851 42.308 13.91 5.69 0.00 3.85
827 833 2.424684 AGGAGGATAGTCCCCCATTC 57.575 55.000 0.00 0.00 37.19 2.67
923 933 9.546428 CCTTGGTTTCAGAGAAAATAAAAACAT 57.454 29.630 0.00 0.00 0.00 2.71
924 934 8.536175 ACCTTGGTTTCAGAGAAAATAAAAACA 58.464 29.630 0.00 0.00 0.00 2.83
925 935 8.817100 CACCTTGGTTTCAGAGAAAATAAAAAC 58.183 33.333 0.00 0.00 0.00 2.43
988 1000 2.135139 CGCTTGCATAATCTTCCGCTA 58.865 47.619 0.00 0.00 0.00 4.26
1010 1022 1.511305 CAGAGGCCAAGCTGCAATG 59.489 57.895 5.01 0.00 0.00 2.82
1011 1023 4.013702 CAGAGGCCAAGCTGCAAT 57.986 55.556 5.01 0.00 0.00 3.56
1055 1070 3.056328 GAACCGCACTTCCAGGGC 61.056 66.667 0.00 0.00 42.41 5.19
1056 1071 1.550130 TAGGAACCGCACTTCCAGGG 61.550 60.000 11.13 0.00 42.16 4.45
1100 1115 3.254903 TGGGTATGGTATCTCGACATTCG 59.745 47.826 0.00 0.00 42.10 3.34
1155 1170 3.059982 CAGTCGAGGTGGAAGCCA 58.940 61.111 0.00 0.00 32.25 4.75
1190 1205 3.197549 GGCAGTCCTGAATCTCTTCTCTT 59.802 47.826 0.00 0.00 32.29 2.85
1198 1213 2.026449 CCTCAAAGGCAGTCCTGAATCT 60.026 50.000 0.00 0.00 43.40 2.40
1199 1214 2.290577 ACCTCAAAGGCAGTCCTGAATC 60.291 50.000 0.00 0.00 43.40 2.52
1208 1223 0.390472 GTCGAGGACCTCAAAGGCAG 60.390 60.000 21.49 3.25 39.63 4.85
1269 1284 1.071071 GTGTTGTAGCAGTACCCCACA 59.929 52.381 0.00 0.00 32.72 4.17
1342 1357 2.838202 AGAGGCGGTATGGAGAAGAAAA 59.162 45.455 0.00 0.00 0.00 2.29
1401 1416 1.133482 TCCGAGATAGAGGACATGGCA 60.133 52.381 0.00 0.00 0.00 4.92
1408 1423 0.835276 TCACGGTCCGAGATAGAGGA 59.165 55.000 20.51 0.00 0.00 3.71
1428 1443 2.660064 CCCTTCGTAGCCTGTGCCT 61.660 63.158 0.00 0.00 38.69 4.75
1565 1586 8.321353 TGAACTTCCATATCTGACTATTGTTGT 58.679 33.333 0.00 0.00 0.00 3.32
1602 1623 5.527951 GTTGTTTCCATCAACACTGCATAA 58.472 37.500 0.00 0.00 42.94 1.90
1692 1713 1.149174 CCAGTCAAGCACCACAGGT 59.851 57.895 0.00 0.00 35.62 4.00
1841 1862 5.163195 GGAAGATAAGGGTTGCCTTCATAGA 60.163 44.000 0.00 0.00 36.03 1.98
2154 2238 4.025563 TGTTCATGTTTGTTCGGTCGTTAG 60.026 41.667 0.00 0.00 0.00 2.34
2296 2380 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2299 2383 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2300 2384 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2301 2385 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2302 2386 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2303 2387 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2304 2388 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2305 2389 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2306 2390 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2307 2391 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2308 2392 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2309 2393 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2332 2416 0.040646 TTAGACCAAGGGGCGAGAGA 59.959 55.000 0.00 0.00 34.63 3.10
2334 2418 1.354101 TTTTAGACCAAGGGGCGAGA 58.646 50.000 0.00 0.00 34.63 4.04
2437 2521 3.932545 TTGAATTGTCATTTGTCCCCG 57.067 42.857 0.00 0.00 32.48 5.73
2657 2741 3.833706 GCAACTCGCATATTGCTCC 57.166 52.632 8.20 0.00 46.21 4.70
2669 2753 4.569943 TCCACATCTTCTAACTGCAACTC 58.430 43.478 0.00 0.00 0.00 3.01
2681 2765 7.646314 CCATTCATCAACTATTCCACATCTTC 58.354 38.462 0.00 0.00 0.00 2.87
2704 2788 2.109834 TCCCAAATTCCTTCTTCTGCCA 59.890 45.455 0.00 0.00 0.00 4.92
2768 2852 0.595095 GCAGCAACCCAAGAGTTCAG 59.405 55.000 0.00 0.00 0.00 3.02
2770 2854 0.538287 AGGCAGCAACCCAAGAGTTC 60.538 55.000 0.00 0.00 0.00 3.01
2865 2949 3.071312 TGAAGGAAATTTGCAATGCCTGT 59.929 39.130 12.54 0.00 0.00 4.00
2919 3003 5.669477 GAATGTAGGAAGCTGAGACATTCT 58.331 41.667 23.54 2.77 46.65 2.40
2923 3007 6.519382 CATATGAATGTAGGAAGCTGAGACA 58.481 40.000 0.00 0.00 0.00 3.41
2952 3036 5.595542 CACATCACCATGAATAATTGGGAGT 59.404 40.000 0.00 0.00 37.32 3.85
2954 3038 5.764432 TCACATCACCATGAATAATTGGGA 58.236 37.500 0.00 0.00 37.32 4.37
3046 3130 1.118965 TGCTCTTTGTCAGACGGGGA 61.119 55.000 0.00 0.00 0.00 4.81
3074 3158 4.013728 GCCACATGTACCTTGAACCATTA 58.986 43.478 0.00 0.00 0.00 1.90
3098 3182 3.216800 TGCATGTATTCAGGATCAAGGC 58.783 45.455 0.00 0.00 0.00 4.35
3163 3247 6.451393 CGGTGAGGATCTCTAAAAGGATAAG 58.549 44.000 0.00 0.00 34.92 1.73
3271 3355 3.264193 TGGCTCACCAACACATCTTCTAT 59.736 43.478 0.00 0.00 45.37 1.98
3314 3398 0.980423 AAGTCCTCTCAGCAACTCCC 59.020 55.000 0.00 0.00 0.00 4.30
3372 3456 4.776837 ACATTTTTCATGGATGGCCTGTTA 59.223 37.500 3.32 0.00 34.31 2.41
3391 3475 2.309528 TTTAGCTCATCCGCGACATT 57.690 45.000 8.23 0.00 34.40 2.71
3399 3483 9.336171 AGTTTTCTCAATCTATTTAGCTCATCC 57.664 33.333 0.00 0.00 0.00 3.51
3437 3521 3.104512 TCCATCTCGAGTTGTACCCAAT 58.895 45.455 19.45 0.00 32.11 3.16
3515 3599 2.652348 TGGTCCATTGGATACCCACTTT 59.348 45.455 9.01 0.00 43.41 2.66
3648 3736 8.044908 ACCTCGAAATAAAATACATGTGGTACT 58.955 33.333 9.11 0.00 34.07 2.73
3669 3757 2.787601 TTAGCGGCAATACTACCTCG 57.212 50.000 1.45 0.00 0.00 4.63
3753 3878 9.119418 TCACACATCGAATGGATTATAAAACAT 57.881 29.630 5.17 0.00 31.28 2.71
3760 3885 7.879677 ACATACATCACACATCGAATGGATTAT 59.120 33.333 5.17 4.22 31.28 1.28
3874 3999 3.561725 GCCTTGGATCGGAGATAGTTTTG 59.438 47.826 0.00 0.00 45.12 2.44
4088 4213 9.325198 GTTATGTTTTCCTTGGAAAAATCAACT 57.675 29.630 23.93 10.97 36.04 3.16
4186 4311 2.622942 GCACAATTGGTTCAACTCCTCA 59.377 45.455 10.83 0.00 0.00 3.86
4214 4339 7.744087 TCAGTTTAGATTTGTACTTGCACAT 57.256 32.000 0.00 0.00 0.00 3.21
4215 4340 7.066404 TGTTCAGTTTAGATTTGTACTTGCACA 59.934 33.333 0.00 0.00 0.00 4.57
4216 4341 7.414436 TGTTCAGTTTAGATTTGTACTTGCAC 58.586 34.615 0.00 0.00 0.00 4.57
4217 4342 7.561021 TGTTCAGTTTAGATTTGTACTTGCA 57.439 32.000 0.00 0.00 0.00 4.08
4229 4354 9.225436 TGCACATATGTTATTGTTCAGTTTAGA 57.775 29.630 5.37 0.00 0.00 2.10
4230 4355 9.838975 TTGCACATATGTTATTGTTCAGTTTAG 57.161 29.630 5.37 0.00 0.00 1.85
4231 4356 9.838975 CTTGCACATATGTTATTGTTCAGTTTA 57.161 29.630 5.37 0.00 0.00 2.01
4232 4357 8.359642 ACTTGCACATATGTTATTGTTCAGTTT 58.640 29.630 5.37 0.00 0.00 2.66
4233 4358 7.885297 ACTTGCACATATGTTATTGTTCAGTT 58.115 30.769 5.37 0.00 0.00 3.16
4234 4359 7.452880 ACTTGCACATATGTTATTGTTCAGT 57.547 32.000 5.37 0.00 0.00 3.41
4235 4360 8.668353 AGTACTTGCACATATGTTATTGTTCAG 58.332 33.333 5.37 0.00 0.00 3.02
4236 4361 8.560355 AGTACTTGCACATATGTTATTGTTCA 57.440 30.769 5.37 0.00 0.00 3.18
4237 4362 9.277565 CAAGTACTTGCACATATGTTATTGTTC 57.722 33.333 22.03 2.14 33.45 3.18
4238 4363 8.792633 ACAAGTACTTGCACATATGTTATTGTT 58.207 29.630 30.97 6.56 44.03 2.83
4239 4364 8.335532 ACAAGTACTTGCACATATGTTATTGT 57.664 30.769 30.97 7.60 44.03 2.71
4242 4367 9.443323 TGTTACAAGTACTTGCACATATGTTAT 57.557 29.630 30.97 12.63 44.03 1.89
4243 4368 8.834749 TGTTACAAGTACTTGCACATATGTTA 57.165 30.769 30.97 12.82 44.03 2.41
4244 4369 7.737972 TGTTACAAGTACTTGCACATATGTT 57.262 32.000 30.97 13.75 44.03 2.71
4245 4370 7.824289 AGATGTTACAAGTACTTGCACATATGT 59.176 33.333 33.45 24.45 42.77 2.29
4246 4371 8.201554 AGATGTTACAAGTACTTGCACATATG 57.798 34.615 33.45 16.11 42.77 1.78
4247 4372 8.040727 TGAGATGTTACAAGTACTTGCACATAT 58.959 33.333 33.45 31.90 42.77 1.78
4248 4373 7.382898 TGAGATGTTACAAGTACTTGCACATA 58.617 34.615 33.45 23.68 42.77 2.29
4249 4374 6.230472 TGAGATGTTACAAGTACTTGCACAT 58.770 36.000 33.69 33.69 44.13 3.21
4250 4375 5.606505 TGAGATGTTACAAGTACTTGCACA 58.393 37.500 29.61 29.61 44.03 4.57
4251 4376 6.368791 TGATGAGATGTTACAAGTACTTGCAC 59.631 38.462 30.97 26.48 44.03 4.57
4252 4377 6.463360 TGATGAGATGTTACAAGTACTTGCA 58.537 36.000 30.97 22.14 44.03 4.08
4253 4378 6.968131 TGATGAGATGTTACAAGTACTTGC 57.032 37.500 30.97 17.72 44.03 4.01
4256 4381 9.587772 GTGTAATGATGAGATGTTACAAGTACT 57.412 33.333 0.00 0.00 38.37 2.73
4257 4382 9.587772 AGTGTAATGATGAGATGTTACAAGTAC 57.412 33.333 0.00 0.00 38.37 2.73
4258 4383 9.586435 CAGTGTAATGATGAGATGTTACAAGTA 57.414 33.333 0.00 0.00 38.37 2.24
4259 4384 8.097038 ACAGTGTAATGATGAGATGTTACAAGT 58.903 33.333 0.00 0.00 38.37 3.16
4260 4385 8.484641 ACAGTGTAATGATGAGATGTTACAAG 57.515 34.615 0.00 0.00 38.37 3.16
4261 4386 8.314021 AGACAGTGTAATGATGAGATGTTACAA 58.686 33.333 0.00 0.00 38.37 2.41
4262 4387 7.840931 AGACAGTGTAATGATGAGATGTTACA 58.159 34.615 0.00 0.00 35.39 2.41
4263 4388 8.709386 AAGACAGTGTAATGATGAGATGTTAC 57.291 34.615 0.00 0.00 0.00 2.50
4264 4389 9.803315 GTAAGACAGTGTAATGATGAGATGTTA 57.197 33.333 0.00 0.00 0.00 2.41
4265 4390 8.314021 TGTAAGACAGTGTAATGATGAGATGTT 58.686 33.333 0.00 0.00 0.00 2.71
4266 4391 7.761704 GTGTAAGACAGTGTAATGATGAGATGT 59.238 37.037 0.00 0.00 0.00 3.06
4267 4392 7.761249 TGTGTAAGACAGTGTAATGATGAGATG 59.239 37.037 0.00 0.00 0.00 2.90
4268 4393 7.840931 TGTGTAAGACAGTGTAATGATGAGAT 58.159 34.615 0.00 0.00 0.00 2.75
4269 4394 7.227049 TGTGTAAGACAGTGTAATGATGAGA 57.773 36.000 0.00 0.00 0.00 3.27
4270 4395 7.978414 AGATGTGTAAGACAGTGTAATGATGAG 59.022 37.037 0.00 0.00 38.23 2.90
4271 4396 7.840931 AGATGTGTAAGACAGTGTAATGATGA 58.159 34.615 0.00 0.00 38.23 2.92
4272 4397 7.761249 TGAGATGTGTAAGACAGTGTAATGATG 59.239 37.037 0.00 0.00 38.23 3.07
4273 4398 7.840931 TGAGATGTGTAAGACAGTGTAATGAT 58.159 34.615 0.00 0.00 38.23 2.45
4274 4399 7.227049 TGAGATGTGTAAGACAGTGTAATGA 57.773 36.000 0.00 0.00 38.23 2.57
4275 4400 7.889589 TTGAGATGTGTAAGACAGTGTAATG 57.110 36.000 0.00 0.00 38.23 1.90
4276 4401 9.587772 GTATTGAGATGTGTAAGACAGTGTAAT 57.412 33.333 0.00 0.00 38.23 1.89
4277 4402 8.803235 AGTATTGAGATGTGTAAGACAGTGTAA 58.197 33.333 0.00 0.00 38.23 2.41
4278 4403 8.349568 AGTATTGAGATGTGTAAGACAGTGTA 57.650 34.615 0.00 0.00 38.23 2.90
4279 4404 7.233389 AGTATTGAGATGTGTAAGACAGTGT 57.767 36.000 0.00 0.00 38.23 3.55
4280 4405 7.702772 GGTAGTATTGAGATGTGTAAGACAGTG 59.297 40.741 0.00 0.00 38.23 3.66
4281 4406 7.415318 CGGTAGTATTGAGATGTGTAAGACAGT 60.415 40.741 0.00 0.00 38.23 3.55
4282 4407 6.913132 CGGTAGTATTGAGATGTGTAAGACAG 59.087 42.308 0.00 0.00 38.23 3.51
4283 4408 6.600427 TCGGTAGTATTGAGATGTGTAAGACA 59.400 38.462 0.00 0.00 39.53 3.41
4284 4409 7.024340 TCGGTAGTATTGAGATGTGTAAGAC 57.976 40.000 0.00 0.00 0.00 3.01
4285 4410 7.634671 TTCGGTAGTATTGAGATGTGTAAGA 57.365 36.000 0.00 0.00 0.00 2.10
4286 4411 8.873215 ATTTCGGTAGTATTGAGATGTGTAAG 57.127 34.615 0.00 0.00 0.00 2.34
4287 4412 9.661563 AAATTTCGGTAGTATTGAGATGTGTAA 57.338 29.630 0.00 0.00 0.00 2.41
4288 4413 9.309516 GAAATTTCGGTAGTATTGAGATGTGTA 57.690 33.333 1.68 0.00 0.00 2.90
4289 4414 7.822334 TGAAATTTCGGTAGTATTGAGATGTGT 59.178 33.333 13.34 0.00 0.00 3.72
4290 4415 8.196802 TGAAATTTCGGTAGTATTGAGATGTG 57.803 34.615 13.34 0.00 0.00 3.21
4291 4416 8.786826 TTGAAATTTCGGTAGTATTGAGATGT 57.213 30.769 13.34 0.00 0.00 3.06
4292 4417 9.708222 CTTTGAAATTTCGGTAGTATTGAGATG 57.292 33.333 13.34 0.00 0.00 2.90
4293 4418 9.667107 TCTTTGAAATTTCGGTAGTATTGAGAT 57.333 29.630 13.34 0.00 0.00 2.75
4294 4419 9.151471 CTCTTTGAAATTTCGGTAGTATTGAGA 57.849 33.333 13.34 4.04 0.00 3.27
4295 4420 9.151471 TCTCTTTGAAATTTCGGTAGTATTGAG 57.849 33.333 13.34 9.63 0.00 3.02
4296 4421 9.496873 TTCTCTTTGAAATTTCGGTAGTATTGA 57.503 29.630 13.34 1.03 0.00 2.57
4299 4424 9.720769 TCTTTCTCTTTGAAATTTCGGTAGTAT 57.279 29.630 13.34 0.00 42.96 2.12
4300 4425 9.204570 CTCTTTCTCTTTGAAATTTCGGTAGTA 57.795 33.333 13.34 0.47 42.96 1.82
4301 4426 7.931948 TCTCTTTCTCTTTGAAATTTCGGTAGT 59.068 33.333 13.34 0.00 42.96 2.73
4302 4427 8.224437 GTCTCTTTCTCTTTGAAATTTCGGTAG 58.776 37.037 13.34 9.94 42.96 3.18
4303 4428 7.713507 TGTCTCTTTCTCTTTGAAATTTCGGTA 59.286 33.333 13.34 0.00 42.96 4.02
4304 4429 6.542370 TGTCTCTTTCTCTTTGAAATTTCGGT 59.458 34.615 13.34 0.00 42.96 4.69
4305 4430 6.959361 TGTCTCTTTCTCTTTGAAATTTCGG 58.041 36.000 13.34 6.51 42.96 4.30
4306 4431 8.841444 TTTGTCTCTTTCTCTTTGAAATTTCG 57.159 30.769 13.34 0.00 42.96 3.46
4309 4434 8.628280 CCTCTTTGTCTCTTTCTCTTTGAAATT 58.372 33.333 0.00 0.00 42.96 1.82
4310 4435 7.995488 TCCTCTTTGTCTCTTTCTCTTTGAAAT 59.005 33.333 0.00 0.00 42.96 2.17
4311 4436 7.338710 TCCTCTTTGTCTCTTTCTCTTTGAAA 58.661 34.615 0.00 0.00 41.85 2.69
4312 4437 6.889198 TCCTCTTTGTCTCTTTCTCTTTGAA 58.111 36.000 0.00 0.00 0.00 2.69
4313 4438 6.098982 ACTCCTCTTTGTCTCTTTCTCTTTGA 59.901 38.462 0.00 0.00 0.00 2.69
4314 4439 6.287525 ACTCCTCTTTGTCTCTTTCTCTTTG 58.712 40.000 0.00 0.00 0.00 2.77
4315 4440 6.493189 ACTCCTCTTTGTCTCTTTCTCTTT 57.507 37.500 0.00 0.00 0.00 2.52
4316 4441 6.295067 GCTACTCCTCTTTGTCTCTTTCTCTT 60.295 42.308 0.00 0.00 0.00 2.85
4317 4442 5.185056 GCTACTCCTCTTTGTCTCTTTCTCT 59.815 44.000 0.00 0.00 0.00 3.10
4318 4443 5.047660 TGCTACTCCTCTTTGTCTCTTTCTC 60.048 44.000 0.00 0.00 0.00 2.87
4319 4444 4.835615 TGCTACTCCTCTTTGTCTCTTTCT 59.164 41.667 0.00 0.00 0.00 2.52
4320 4445 5.140747 TGCTACTCCTCTTTGTCTCTTTC 57.859 43.478 0.00 0.00 0.00 2.62
4321 4446 4.562552 GCTGCTACTCCTCTTTGTCTCTTT 60.563 45.833 0.00 0.00 0.00 2.52
4322 4447 3.056179 GCTGCTACTCCTCTTTGTCTCTT 60.056 47.826 0.00 0.00 0.00 2.85
4323 4448 2.495669 GCTGCTACTCCTCTTTGTCTCT 59.504 50.000 0.00 0.00 0.00 3.10
4324 4449 2.232452 TGCTGCTACTCCTCTTTGTCTC 59.768 50.000 0.00 0.00 0.00 3.36
4325 4450 2.233431 CTGCTGCTACTCCTCTTTGTCT 59.767 50.000 0.00 0.00 0.00 3.41
4326 4451 2.615869 CTGCTGCTACTCCTCTTTGTC 58.384 52.381 0.00 0.00 0.00 3.18
4327 4452 1.338579 GCTGCTGCTACTCCTCTTTGT 60.339 52.381 8.53 0.00 36.03 2.83
4328 4453 1.338484 TGCTGCTGCTACTCCTCTTTG 60.338 52.381 17.00 0.00 40.48 2.77
4329 4454 0.979665 TGCTGCTGCTACTCCTCTTT 59.020 50.000 17.00 0.00 40.48 2.52
4330 4455 0.979665 TTGCTGCTGCTACTCCTCTT 59.020 50.000 17.00 0.00 40.48 2.85
4331 4456 0.536260 CTTGCTGCTGCTACTCCTCT 59.464 55.000 17.00 0.00 40.48 3.69
4332 4457 0.461693 CCTTGCTGCTGCTACTCCTC 60.462 60.000 17.00 0.00 40.48 3.71
4333 4458 1.197430 ACCTTGCTGCTGCTACTCCT 61.197 55.000 17.00 0.00 40.48 3.69
4334 4459 0.322008 AACCTTGCTGCTGCTACTCC 60.322 55.000 17.00 0.00 40.48 3.85
4335 4460 1.198637 CAAACCTTGCTGCTGCTACTC 59.801 52.381 17.00 0.00 40.48 2.59
4336 4461 1.242076 CAAACCTTGCTGCTGCTACT 58.758 50.000 17.00 0.00 40.48 2.57
4337 4462 0.242017 CCAAACCTTGCTGCTGCTAC 59.758 55.000 17.00 0.00 40.48 3.58
4338 4463 0.895100 CCCAAACCTTGCTGCTGCTA 60.895 55.000 17.00 8.35 40.48 3.49
4339 4464 2.205152 CCCAAACCTTGCTGCTGCT 61.205 57.895 17.00 0.00 40.48 4.24
4340 4465 2.341176 CCCAAACCTTGCTGCTGC 59.659 61.111 8.89 8.89 40.20 5.25
4341 4466 2.576832 CCCCCAAACCTTGCTGCTG 61.577 63.158 0.00 0.00 0.00 4.41
4342 4467 2.203684 CCCCCAAACCTTGCTGCT 60.204 61.111 0.00 0.00 0.00 4.24
4343 4468 2.203625 TCCCCCAAACCTTGCTGC 60.204 61.111 0.00 0.00 0.00 5.25
4344 4469 0.178964 TTCTCCCCCAAACCTTGCTG 60.179 55.000 0.00 0.00 0.00 4.41
4345 4470 0.560688 TTTCTCCCCCAAACCTTGCT 59.439 50.000 0.00 0.00 0.00 3.91
4346 4471 1.344438 CTTTTCTCCCCCAAACCTTGC 59.656 52.381 0.00 0.00 0.00 4.01
4347 4472 1.970640 CCTTTTCTCCCCCAAACCTTG 59.029 52.381 0.00 0.00 0.00 3.61
4348 4473 1.863581 TCCTTTTCTCCCCCAAACCTT 59.136 47.619 0.00 0.00 0.00 3.50
4349 4474 1.429299 CTCCTTTTCTCCCCCAAACCT 59.571 52.381 0.00 0.00 0.00 3.50
4350 4475 1.924731 CTCCTTTTCTCCCCCAAACC 58.075 55.000 0.00 0.00 0.00 3.27
4351 4476 1.257743 GCTCCTTTTCTCCCCCAAAC 58.742 55.000 0.00 0.00 0.00 2.93
4352 4477 0.856982 TGCTCCTTTTCTCCCCCAAA 59.143 50.000 0.00 0.00 0.00 3.28
4353 4478 1.005924 GATGCTCCTTTTCTCCCCCAA 59.994 52.381 0.00 0.00 0.00 4.12
4354 4479 0.625849 GATGCTCCTTTTCTCCCCCA 59.374 55.000 0.00 0.00 0.00 4.96
4355 4480 0.625849 TGATGCTCCTTTTCTCCCCC 59.374 55.000 0.00 0.00 0.00 5.40
4356 4481 1.283321 ACTGATGCTCCTTTTCTCCCC 59.717 52.381 0.00 0.00 0.00 4.81
4357 4482 2.797177 ACTGATGCTCCTTTTCTCCC 57.203 50.000 0.00 0.00 0.00 4.30
4358 4483 4.279420 ACAAAACTGATGCTCCTTTTCTCC 59.721 41.667 0.00 0.00 0.00 3.71
4359 4484 5.218139 CACAAAACTGATGCTCCTTTTCTC 58.782 41.667 0.00 0.00 0.00 2.87
4360 4485 4.038402 CCACAAAACTGATGCTCCTTTTCT 59.962 41.667 0.00 0.00 0.00 2.52
4361 4486 4.037923 TCCACAAAACTGATGCTCCTTTTC 59.962 41.667 0.00 0.00 0.00 2.29
4362 4487 3.960102 TCCACAAAACTGATGCTCCTTTT 59.040 39.130 0.00 0.00 0.00 2.27
4363 4488 3.565307 TCCACAAAACTGATGCTCCTTT 58.435 40.909 0.00 0.00 0.00 3.11
4364 4489 3.152341 CTCCACAAAACTGATGCTCCTT 58.848 45.455 0.00 0.00 0.00 3.36
4365 4490 2.373169 TCTCCACAAAACTGATGCTCCT 59.627 45.455 0.00 0.00 0.00 3.69
4366 4491 2.746362 CTCTCCACAAAACTGATGCTCC 59.254 50.000 0.00 0.00 0.00 4.70
4367 4492 3.668447 TCTCTCCACAAAACTGATGCTC 58.332 45.455 0.00 0.00 0.00 4.26
4368 4493 3.558746 CCTCTCTCCACAAAACTGATGCT 60.559 47.826 0.00 0.00 0.00 3.79
4369 4494 2.746362 CCTCTCTCCACAAAACTGATGC 59.254 50.000 0.00 0.00 0.00 3.91
4370 4495 4.277515 TCCTCTCTCCACAAAACTGATG 57.722 45.455 0.00 0.00 0.00 3.07
4371 4496 4.782156 AGATCCTCTCTCCACAAAACTGAT 59.218 41.667 0.00 0.00 0.00 2.90
4372 4497 4.163427 AGATCCTCTCTCCACAAAACTGA 58.837 43.478 0.00 0.00 0.00 3.41
4373 4498 4.550076 AGATCCTCTCTCCACAAAACTG 57.450 45.455 0.00 0.00 0.00 3.16
4374 4499 4.594920 TGAAGATCCTCTCTCCACAAAACT 59.405 41.667 0.00 0.00 31.03 2.66
4375 4500 4.899502 TGAAGATCCTCTCTCCACAAAAC 58.100 43.478 0.00 0.00 31.03 2.43
4376 4501 4.564406 GCTGAAGATCCTCTCTCCACAAAA 60.564 45.833 0.00 0.00 31.03 2.44
4377 4502 3.055530 GCTGAAGATCCTCTCTCCACAAA 60.056 47.826 0.00 0.00 31.03 2.83
4378 4503 2.499289 GCTGAAGATCCTCTCTCCACAA 59.501 50.000 0.00 0.00 31.03 3.33
4379 4504 2.106566 GCTGAAGATCCTCTCTCCACA 58.893 52.381 0.00 0.00 31.03 4.17
4380 4505 2.101249 CTGCTGAAGATCCTCTCTCCAC 59.899 54.545 0.00 0.00 31.03 4.02
4381 4506 2.024560 TCTGCTGAAGATCCTCTCTCCA 60.025 50.000 0.00 0.00 31.03 3.86
4382 4507 2.624838 CTCTGCTGAAGATCCTCTCTCC 59.375 54.545 0.00 0.00 33.29 3.71
4383 4508 2.624838 CCTCTGCTGAAGATCCTCTCTC 59.375 54.545 0.00 0.00 33.29 3.20
4384 4509 2.669781 CCTCTGCTGAAGATCCTCTCT 58.330 52.381 0.00 0.00 33.29 3.10
4385 4510 1.688197 CCCTCTGCTGAAGATCCTCTC 59.312 57.143 0.00 0.00 33.29 3.20
4386 4511 1.290431 TCCCTCTGCTGAAGATCCTCT 59.710 52.381 0.00 0.00 33.29 3.69
4387 4512 1.688197 CTCCCTCTGCTGAAGATCCTC 59.312 57.143 0.00 0.00 33.29 3.71
4388 4513 1.692121 CCTCCCTCTGCTGAAGATCCT 60.692 57.143 0.00 0.00 33.29 3.24
4389 4514 0.758123 CCTCCCTCTGCTGAAGATCC 59.242 60.000 0.00 0.00 33.29 3.36
4390 4515 1.494960 ACCTCCCTCTGCTGAAGATC 58.505 55.000 0.00 0.00 33.29 2.75
4391 4516 1.558756 CAACCTCCCTCTGCTGAAGAT 59.441 52.381 0.00 0.00 33.29 2.40
4392 4517 0.979665 CAACCTCCCTCTGCTGAAGA 59.020 55.000 0.00 0.00 0.00 2.87
4393 4518 0.979665 TCAACCTCCCTCTGCTGAAG 59.020 55.000 0.00 0.00 0.00 3.02
4394 4519 1.434188 TTCAACCTCCCTCTGCTGAA 58.566 50.000 0.00 0.00 0.00 3.02
4395 4520 1.349026 CTTTCAACCTCCCTCTGCTGA 59.651 52.381 0.00 0.00 0.00 4.26
4396 4521 1.349026 TCTTTCAACCTCCCTCTGCTG 59.651 52.381 0.00 0.00 0.00 4.41
4397 4522 1.627834 CTCTTTCAACCTCCCTCTGCT 59.372 52.381 0.00 0.00 0.00 4.24
4398 4523 1.625818 TCTCTTTCAACCTCCCTCTGC 59.374 52.381 0.00 0.00 0.00 4.26
4399 4524 3.169099 TCTCTCTTTCAACCTCCCTCTG 58.831 50.000 0.00 0.00 0.00 3.35
4400 4525 3.440127 CTCTCTCTTTCAACCTCCCTCT 58.560 50.000 0.00 0.00 0.00 3.69
4401 4526 2.093711 GCTCTCTCTTTCAACCTCCCTC 60.094 54.545 0.00 0.00 0.00 4.30
4402 4527 1.905894 GCTCTCTCTTTCAACCTCCCT 59.094 52.381 0.00 0.00 0.00 4.20
4403 4528 1.625818 TGCTCTCTCTTTCAACCTCCC 59.374 52.381 0.00 0.00 0.00 4.30
4404 4529 2.934801 GCTGCTCTCTCTTTCAACCTCC 60.935 54.545 0.00 0.00 0.00 4.30
4405 4530 2.289320 TGCTGCTCTCTCTTTCAACCTC 60.289 50.000 0.00 0.00 0.00 3.85
4406 4531 1.696336 TGCTGCTCTCTCTTTCAACCT 59.304 47.619 0.00 0.00 0.00 3.50
4407 4532 2.075338 CTGCTGCTCTCTCTTTCAACC 58.925 52.381 0.00 0.00 0.00 3.77
4408 4533 1.464219 GCTGCTGCTCTCTCTTTCAAC 59.536 52.381 8.53 0.00 36.03 3.18
4409 4534 1.071228 TGCTGCTGCTCTCTCTTTCAA 59.929 47.619 17.00 0.00 40.48 2.69
4410 4535 0.683412 TGCTGCTGCTCTCTCTTTCA 59.317 50.000 17.00 0.00 40.48 2.69
4411 4536 1.733360 CTTGCTGCTGCTCTCTCTTTC 59.267 52.381 17.00 0.00 40.48 2.62
4412 4537 1.072015 ACTTGCTGCTGCTCTCTCTTT 59.928 47.619 17.00 0.00 40.48 2.52
4413 4538 0.686224 ACTTGCTGCTGCTCTCTCTT 59.314 50.000 17.00 0.00 40.48 2.85
4414 4539 0.686224 AACTTGCTGCTGCTCTCTCT 59.314 50.000 17.00 0.00 40.48 3.10
4415 4540 1.077915 GAACTTGCTGCTGCTCTCTC 58.922 55.000 17.00 5.07 40.48 3.20
4416 4541 0.395686 TGAACTTGCTGCTGCTCTCT 59.604 50.000 17.00 0.00 40.48 3.10
4417 4542 0.797542 CTGAACTTGCTGCTGCTCTC 59.202 55.000 17.00 8.16 40.48 3.20
4418 4543 1.235948 GCTGAACTTGCTGCTGCTCT 61.236 55.000 17.00 0.00 40.48 4.09
4419 4544 1.209640 GCTGAACTTGCTGCTGCTC 59.790 57.895 17.00 6.38 40.48 4.26
4420 4545 1.516365 CTGCTGAACTTGCTGCTGCT 61.516 55.000 17.00 0.00 40.48 4.24
4421 4546 1.081376 CTGCTGAACTTGCTGCTGC 60.081 57.895 8.89 8.89 40.20 5.25
4422 4547 0.517755 CTCTGCTGAACTTGCTGCTG 59.482 55.000 0.00 0.00 34.32 4.41
4423 4548 0.605860 CCTCTGCTGAACTTGCTGCT 60.606 55.000 0.00 0.00 34.32 4.24
4424 4549 0.604780 TCCTCTGCTGAACTTGCTGC 60.605 55.000 0.00 0.00 0.00 5.25
4425 4550 1.805345 CTTCCTCTGCTGAACTTGCTG 59.195 52.381 0.00 0.00 0.00 4.41
4426 4551 1.271271 CCTTCCTCTGCTGAACTTGCT 60.271 52.381 0.00 0.00 0.00 3.91
4427 4552 1.163554 CCTTCCTCTGCTGAACTTGC 58.836 55.000 0.00 0.00 0.00 4.01
4428 4553 2.697654 CTCCTTCCTCTGCTGAACTTG 58.302 52.381 0.00 0.00 0.00 3.16
4429 4554 1.003003 GCTCCTTCCTCTGCTGAACTT 59.997 52.381 0.00 0.00 0.00 2.66
4430 4555 0.612744 GCTCCTTCCTCTGCTGAACT 59.387 55.000 0.00 0.00 0.00 3.01
4431 4556 0.322975 TGCTCCTTCCTCTGCTGAAC 59.677 55.000 0.00 0.00 0.00 3.18
4432 4557 1.059098 TTGCTCCTTCCTCTGCTGAA 58.941 50.000 0.00 0.00 0.00 3.02
4433 4558 0.322975 GTTGCTCCTTCCTCTGCTGA 59.677 55.000 0.00 0.00 0.00 4.26
4434 4559 0.035881 TGTTGCTCCTTCCTCTGCTG 59.964 55.000 0.00 0.00 0.00 4.41
4435 4560 0.767375 TTGTTGCTCCTTCCTCTGCT 59.233 50.000 0.00 0.00 0.00 4.24
4436 4561 0.877743 GTTGTTGCTCCTTCCTCTGC 59.122 55.000 0.00 0.00 0.00 4.26
4437 4562 1.151668 CGTTGTTGCTCCTTCCTCTG 58.848 55.000 0.00 0.00 0.00 3.35
4438 4563 0.035458 CCGTTGTTGCTCCTTCCTCT 59.965 55.000 0.00 0.00 0.00 3.69
4439 4564 0.955919 CCCGTTGTTGCTCCTTCCTC 60.956 60.000 0.00 0.00 0.00 3.71
4440 4565 1.073199 CCCGTTGTTGCTCCTTCCT 59.927 57.895 0.00 0.00 0.00 3.36
4441 4566 1.971695 CCCCGTTGTTGCTCCTTCC 60.972 63.158 0.00 0.00 0.00 3.46
4442 4567 1.971695 CCCCCGTTGTTGCTCCTTC 60.972 63.158 0.00 0.00 0.00 3.46
4443 4568 2.002018 TTCCCCCGTTGTTGCTCCTT 62.002 55.000 0.00 0.00 0.00 3.36
4444 4569 2.411765 CTTCCCCCGTTGTTGCTCCT 62.412 60.000 0.00 0.00 0.00 3.69
4445 4570 1.971695 CTTCCCCCGTTGTTGCTCC 60.972 63.158 0.00 0.00 0.00 4.70
4446 4571 0.955919 CTCTTCCCCCGTTGTTGCTC 60.956 60.000 0.00 0.00 0.00 4.26
4447 4572 1.073199 CTCTTCCCCCGTTGTTGCT 59.927 57.895 0.00 0.00 0.00 3.91
4448 4573 0.536460 TTCTCTTCCCCCGTTGTTGC 60.536 55.000 0.00 0.00 0.00 4.17
4449 4574 1.812571 CATTCTCTTCCCCCGTTGTTG 59.187 52.381 0.00 0.00 0.00 3.33
4450 4575 1.271926 CCATTCTCTTCCCCCGTTGTT 60.272 52.381 0.00 0.00 0.00 2.83
4451 4576 0.328258 CCATTCTCTTCCCCCGTTGT 59.672 55.000 0.00 0.00 0.00 3.32
4452 4577 0.328258 ACCATTCTCTTCCCCCGTTG 59.672 55.000 0.00 0.00 0.00 4.10
4453 4578 0.328258 CACCATTCTCTTCCCCCGTT 59.672 55.000 0.00 0.00 0.00 4.44
4454 4579 0.546747 TCACCATTCTCTTCCCCCGT 60.547 55.000 0.00 0.00 0.00 5.28
4455 4580 0.179000 CTCACCATTCTCTTCCCCCG 59.821 60.000 0.00 0.00 0.00 5.73
4456 4581 0.548510 CCTCACCATTCTCTTCCCCC 59.451 60.000 0.00 0.00 0.00 5.40
4457 4582 1.584724 TCCTCACCATTCTCTTCCCC 58.415 55.000 0.00 0.00 0.00 4.81
4458 4583 2.747799 GCATCCTCACCATTCTCTTCCC 60.748 54.545 0.00 0.00 0.00 3.97
4459 4584 2.092753 TGCATCCTCACCATTCTCTTCC 60.093 50.000 0.00 0.00 0.00 3.46
4460 4585 2.941720 GTGCATCCTCACCATTCTCTTC 59.058 50.000 0.00 0.00 0.00 2.87
4461 4586 2.996631 GTGCATCCTCACCATTCTCTT 58.003 47.619 0.00 0.00 0.00 2.85
4462 4587 2.706339 GTGCATCCTCACCATTCTCT 57.294 50.000 0.00 0.00 0.00 3.10
4470 4595 1.448540 CAGGTCGGTGCATCCTCAC 60.449 63.158 0.00 0.00 36.28 3.51
4471 4596 2.981302 CAGGTCGGTGCATCCTCA 59.019 61.111 0.00 0.00 0.00 3.86
4472 4597 2.512515 GCAGGTCGGTGCATCCTC 60.513 66.667 0.00 0.00 43.41 3.71
4473 4598 4.101448 GGCAGGTCGGTGCATCCT 62.101 66.667 0.00 0.00 45.93 3.24
4475 4600 4.451150 TCGGCAGGTCGGTGCATC 62.451 66.667 0.00 0.00 45.93 3.91
4476 4601 4.457496 CTCGGCAGGTCGGTGCAT 62.457 66.667 0.00 0.00 45.93 3.96
4479 4604 4.803426 GAGCTCGGCAGGTCGGTG 62.803 72.222 0.00 0.00 37.41 4.94
4482 4607 4.504916 CTGGAGCTCGGCAGGTCG 62.505 72.222 7.83 0.00 46.58 4.79
4483 4608 4.828925 GCTGGAGCTCGGCAGGTC 62.829 72.222 20.52 7.36 46.73 3.85
4489 4614 4.463879 CCACTGGCTGGAGCTCGG 62.464 72.222 7.83 4.25 43.95 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.