Multiple sequence alignment - TraesCS2B01G578400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G578400 chr2B 100.000 5476 0 0 1 5476 766525938 766531413 0.000000e+00 10113.0
1 TraesCS2B01G578400 chr2B 79.076 1104 178 30 1656 2734 767695895 767694820 0.000000e+00 710.0
2 TraesCS2B01G578400 chr2B 78.652 712 97 34 2932 3625 767694355 767693681 6.560000e-114 422.0
3 TraesCS2B01G578400 chr2B 91.667 144 11 1 646 789 800545036 800544894 1.200000e-46 198.0
4 TraesCS2B01G578400 chr2B 87.879 66 5 3 1038 1101 767696710 767696646 2.120000e-09 75.0
5 TraesCS2B01G578400 chr2D 89.116 3565 232 74 776 4261 624348071 624351558 0.000000e+00 4290.0
6 TraesCS2B01G578400 chr2D 77.677 1214 209 32 1547 2731 626114798 626113618 0.000000e+00 684.0
7 TraesCS2B01G578400 chr2D 84.993 673 70 15 1 644 624347399 624348069 0.000000e+00 654.0
8 TraesCS2B01G578400 chr2D 78.143 700 94 35 2941 3625 626113485 626112830 1.850000e-104 390.0
9 TraesCS2B01G578400 chr2D 83.827 439 31 23 4328 4743 624351554 624351975 1.110000e-101 381.0
10 TraesCS2B01G578400 chr2D 92.086 139 9 2 645 781 348846548 348846410 1.560000e-45 195.0
11 TraesCS2B01G578400 chr2A 93.824 1441 81 7 1609 3043 755740885 755742323 0.000000e+00 2161.0
12 TraesCS2B01G578400 chr2A 93.026 803 51 5 3049 3848 755742457 755743257 0.000000e+00 1168.0
13 TraesCS2B01G578400 chr2A 90.606 809 58 12 776 1569 755740084 755740889 0.000000e+00 1057.0
14 TraesCS2B01G578400 chr2A 78.533 1104 178 31 1649 2721 756485011 756486086 0.000000e+00 671.0
15 TraesCS2B01G578400 chr2A 80.198 606 85 23 3010 3596 756486306 756486895 6.560000e-114 422.0
16 TraesCS2B01G578400 chr2A 83.777 413 46 11 1 402 755739120 755739522 6.700000e-99 372.0
17 TraesCS2B01G578400 chr2A 84.746 354 36 13 3986 4338 755747299 755747635 6.790000e-89 339.0
18 TraesCS2B01G578400 chr2A 84.588 279 23 9 384 644 755739806 755740082 5.440000e-65 259.0
19 TraesCS2B01G578400 chr2A 94.776 134 5 1 4469 4602 755747940 755748071 2.000000e-49 207.0
20 TraesCS2B01G578400 chr2A 85.507 69 9 1 1056 1124 756484086 756484153 2.740000e-08 71.3
21 TraesCS2B01G578400 chr7A 94.772 746 27 5 4741 5476 448725052 448725795 0.000000e+00 1151.0
22 TraesCS2B01G578400 chr3B 94.482 743 28 3 4744 5476 4299049 4298310 0.000000e+00 1133.0
23 TraesCS2B01G578400 chr3B 95.165 393 17 1 5084 5476 803413028 803413418 2.170000e-173 619.0
24 TraesCS2B01G578400 chr3B 93.284 134 8 1 645 778 816213553 816213685 4.330000e-46 196.0
25 TraesCS2B01G578400 chr1B 94.213 743 31 3 4744 5476 418816516 418815776 0.000000e+00 1123.0
26 TraesCS2B01G578400 chr1B 90.476 147 10 4 646 790 102627853 102627709 2.010000e-44 191.0
27 TraesCS2B01G578400 chr6B 93.432 746 37 2 4741 5476 599763984 599763241 0.000000e+00 1096.0
28 TraesCS2B01G578400 chr6B 83.622 751 89 21 4751 5476 77398587 77397846 0.000000e+00 675.0
29 TraesCS2B01G578400 chr6B 90.066 151 12 3 646 794 439380733 439380584 5.600000e-45 193.0
30 TraesCS2B01G578400 chr5B 91.469 715 48 8 4762 5476 529384330 529383629 0.000000e+00 970.0
31 TraesCS2B01G578400 chr5B 93.846 130 8 0 643 772 384570479 384570608 4.330000e-46 196.0
32 TraesCS2B01G578400 chr7B 93.676 506 24 2 4971 5476 628753143 628753640 0.000000e+00 750.0
33 TraesCS2B01G578400 chr7B 97.414 116 3 0 4741 4856 628753026 628753141 1.200000e-46 198.0
34 TraesCS2B01G578400 chr7B 92.647 136 10 0 644 779 489146772 489146907 4.330000e-46 196.0
35 TraesCS2B01G578400 chr4D 84.225 748 88 12 4751 5476 494058902 494059641 0.000000e+00 701.0
36 TraesCS2B01G578400 chr4D 88.564 411 17 11 3715 4102 234416038 234415635 6.420000e-129 472.0
37 TraesCS2B01G578400 chr4D 77.522 565 90 19 4741 5281 51915815 51916366 6.890000e-79 305.0
38 TraesCS2B01G578400 chr4D 94.798 173 9 0 3548 3720 234419995 234419823 2.510000e-68 270.0
39 TraesCS2B01G578400 chrUn 94.911 393 18 1 5084 5476 291269647 291270037 1.010000e-171 614.0
40 TraesCS2B01G578400 chrUn 94.148 393 21 1 5084 5476 291471280 291470890 1.020000e-166 597.0
41 TraesCS2B01G578400 chr6A 79.530 723 103 25 4779 5476 187976160 187976862 1.790000e-129 473.0
42 TraesCS2B01G578400 chr3A 93.382 136 9 0 639 774 469077566 469077431 9.300000e-48 202.0
43 TraesCS2B01G578400 chr3D 93.893 131 8 0 645 775 11337924 11338054 1.200000e-46 198.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G578400 chr2B 766525938 766531413 5475 False 10113.000000 10113 100.000000 1 5476 1 chr2B.!!$F1 5475
1 TraesCS2B01G578400 chr2B 767693681 767696710 3029 True 402.333333 710 81.869000 1038 3625 3 chr2B.!!$R2 2587
2 TraesCS2B01G578400 chr2D 624347399 624351975 4576 False 1775.000000 4290 85.978667 1 4743 3 chr2D.!!$F1 4742
3 TraesCS2B01G578400 chr2D 626112830 626114798 1968 True 537.000000 684 77.910000 1547 3625 2 chr2D.!!$R2 2078
4 TraesCS2B01G578400 chr2A 755739120 755743257 4137 False 1003.400000 2161 89.164200 1 3848 5 chr2A.!!$F1 3847
5 TraesCS2B01G578400 chr2A 756484086 756486895 2809 False 388.100000 671 81.412667 1056 3596 3 chr2A.!!$F3 2540
6 TraesCS2B01G578400 chr2A 755747299 755748071 772 False 273.000000 339 89.761000 3986 4602 2 chr2A.!!$F2 616
7 TraesCS2B01G578400 chr7A 448725052 448725795 743 False 1151.000000 1151 94.772000 4741 5476 1 chr7A.!!$F1 735
8 TraesCS2B01G578400 chr3B 4298310 4299049 739 True 1133.000000 1133 94.482000 4744 5476 1 chr3B.!!$R1 732
9 TraesCS2B01G578400 chr1B 418815776 418816516 740 True 1123.000000 1123 94.213000 4744 5476 1 chr1B.!!$R2 732
10 TraesCS2B01G578400 chr6B 599763241 599763984 743 True 1096.000000 1096 93.432000 4741 5476 1 chr6B.!!$R3 735
11 TraesCS2B01G578400 chr6B 77397846 77398587 741 True 675.000000 675 83.622000 4751 5476 1 chr6B.!!$R1 725
12 TraesCS2B01G578400 chr5B 529383629 529384330 701 True 970.000000 970 91.469000 4762 5476 1 chr5B.!!$R1 714
13 TraesCS2B01G578400 chr7B 628753026 628753640 614 False 474.000000 750 95.545000 4741 5476 2 chr7B.!!$F2 735
14 TraesCS2B01G578400 chr4D 494058902 494059641 739 False 701.000000 701 84.225000 4751 5476 1 chr4D.!!$F2 725
15 TraesCS2B01G578400 chr4D 234415635 234419995 4360 True 371.000000 472 91.681000 3548 4102 2 chr4D.!!$R1 554
16 TraesCS2B01G578400 chr4D 51915815 51916366 551 False 305.000000 305 77.522000 4741 5281 1 chr4D.!!$F1 540
17 TraesCS2B01G578400 chr6A 187976160 187976862 702 False 473.000000 473 79.530000 4779 5476 1 chr6A.!!$F1 697

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
663 1007 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13 F
667 1011 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12 F
773 1117 0.038744 TTTCGGACGGAGGGAGTACT 59.961 55.000 0.00 0.00 0.00 2.73 F
1602 2383 0.104671 GGCCTCTTGTTTTGCTGCAA 59.895 50.000 11.69 11.69 0.00 4.08 F
1678 2459 1.273327 AGGTTTTGCACTTATGGCAGC 59.727 47.619 0.00 0.00 43.05 5.25 F
1767 2548 1.421410 GCGTTACATCTCCACCTGCG 61.421 60.000 0.00 0.00 0.00 5.18 F
2153 2937 1.464997 GACTTAAAGTGCTGGCCTTCG 59.535 52.381 3.32 0.00 0.00 3.79 F
4275 9417 1.394697 CTTGTGCAGTTTTAACCGCG 58.605 50.000 0.00 0.00 35.12 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2450 3271 0.108585 ATAAGGTGGCGCCGATGAAT 59.891 50.000 23.90 9.83 43.7 2.57 R
2965 4118 8.013378 GTGGCATGATGAAATGAAAAGAAAAAG 58.987 33.333 0.00 0.00 0.0 2.27 R
3170 4467 0.534412 AGCCCTCATCTGACAGAACG 59.466 55.000 9.70 4.08 0.0 3.95 R
3919 9043 1.132817 ACACCCCTCCAGTCAGTAAGT 60.133 52.381 0.00 0.00 0.0 2.24 R
3922 9046 1.640917 GAACACCCCTCCAGTCAGTA 58.359 55.000 0.00 0.00 0.0 2.74 R
3972 9114 4.657814 ACAACACTCAATATGGAACCCT 57.342 40.909 0.00 0.00 0.0 4.34 R
4340 9519 0.329596 ATGGGCCTGTGAAGAACTCC 59.670 55.000 4.53 0.00 0.0 3.85 R
5127 10473 1.388547 GGGTTGCACAGTCAAGACAA 58.611 50.000 2.72 0.00 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 63 8.828688 ACAACTTTGGTAGAGAATAAGTACAC 57.171 34.615 0.00 0.00 0.00 2.90
64 67 8.146412 ACTTTGGTAGAGAATAAGTACACGTTT 58.854 33.333 0.00 0.00 0.00 3.60
65 68 7.878477 TTGGTAGAGAATAAGTACACGTTTG 57.122 36.000 0.00 0.00 0.00 2.93
83 86 4.917415 CGTTTGAGATGTGTGAATTTTCCC 59.083 41.667 0.00 0.00 0.00 3.97
101 117 9.987272 AATTTTCCCTTTCTATAATGCATTAGC 57.013 29.630 22.76 0.00 42.57 3.09
132 148 7.549134 TCGCTGAGTTTAAGAACACATGATAAT 59.451 33.333 0.00 0.00 36.11 1.28
133 149 8.177663 CGCTGAGTTTAAGAACACATGATAATT 58.822 33.333 0.00 0.00 36.11 1.40
147 163 9.851686 ACACATGATAATTCAATGTATACCACT 57.148 29.630 0.00 0.00 34.94 4.00
168 184 6.238076 CCACTGCTTTGTTCCAAAAATGTTAC 60.238 38.462 0.00 0.00 0.00 2.50
171 187 7.064490 ACTGCTTTGTTCCAAAAATGTTACAAG 59.936 33.333 0.00 0.00 0.00 3.16
201 218 6.690194 AATGATAAGAGAACATTGCAGACC 57.310 37.500 0.00 0.00 33.79 3.85
312 336 4.854291 TGTTTAGCAACAATTTATTCCGCG 59.146 37.500 0.00 0.00 40.10 6.46
336 360 1.340991 GCTAGAAAGTCATGGGGGCAA 60.341 52.381 0.00 0.00 0.00 4.52
345 369 3.140707 AGTCATGGGGGCAAATCATCATA 59.859 43.478 0.00 0.00 0.00 2.15
346 370 3.896888 GTCATGGGGGCAAATCATCATAA 59.103 43.478 0.00 0.00 0.00 1.90
352 376 5.607592 TGGGGGCAAATCATCATAATCAATT 59.392 36.000 0.00 0.00 0.00 2.32
396 420 3.556775 CGTTCAACCGAAACCAGAAGTTA 59.443 43.478 0.00 0.00 37.88 2.24
482 820 9.884636 AGTTTTGTAAAAGCTTAGGAATTTTGT 57.115 25.926 0.00 0.00 0.00 2.83
494 832 8.568794 GCTTAGGAATTTTGTAGGATGGTATTC 58.431 37.037 0.00 0.00 0.00 1.75
563 907 6.311200 GCTGTTTGGAATAAACAAATGGCTAG 59.689 38.462 6.66 0.00 39.68 3.42
587 931 7.495055 AGCCTTGATTCCAATGAATTTCATAC 58.505 34.615 12.15 2.29 41.30 2.39
605 949 4.929211 TCATACTCACACGGTCTCATTTTG 59.071 41.667 0.00 0.00 0.00 2.44
623 967 5.607119 TTTTGTATTCTTTCCTCGCTGTC 57.393 39.130 0.00 0.00 0.00 3.51
628 972 5.594725 TGTATTCTTTCCTCGCTGTCTCTAT 59.405 40.000 0.00 0.00 0.00 1.98
629 973 4.377839 TTCTTTCCTCGCTGTCTCTATG 57.622 45.455 0.00 0.00 0.00 2.23
633 977 4.576216 TTCCTCGCTGTCTCTATGATTC 57.424 45.455 0.00 0.00 0.00 2.52
636 980 3.307674 CTCGCTGTCTCTATGATTCTGC 58.692 50.000 0.00 0.00 0.00 4.26
639 983 2.793790 GCTGTCTCTATGATTCTGCGTG 59.206 50.000 0.00 0.00 0.00 5.34
644 988 3.947834 TCTCTATGATTCTGCGTGTCTCA 59.052 43.478 0.00 0.00 0.00 3.27
647 991 5.763088 TCTATGATTCTGCGTGTCTCATAC 58.237 41.667 0.00 0.00 0.00 2.39
648 992 4.662468 ATGATTCTGCGTGTCTCATACT 57.338 40.909 0.00 0.00 0.00 2.12
649 993 4.033990 TGATTCTGCGTGTCTCATACTC 57.966 45.455 0.00 0.00 0.00 2.59
650 994 2.941453 TTCTGCGTGTCTCATACTCC 57.059 50.000 0.00 0.00 0.00 3.85
651 995 1.103803 TCTGCGTGTCTCATACTCCC 58.896 55.000 0.00 0.00 0.00 4.30
652 996 1.107114 CTGCGTGTCTCATACTCCCT 58.893 55.000 0.00 0.00 0.00 4.20
653 997 1.066303 CTGCGTGTCTCATACTCCCTC 59.934 57.143 0.00 0.00 0.00 4.30
654 998 0.386113 GCGTGTCTCATACTCCCTCC 59.614 60.000 0.00 0.00 0.00 4.30
655 999 0.663688 CGTGTCTCATACTCCCTCCG 59.336 60.000 0.00 0.00 0.00 4.63
656 1000 1.765230 GTGTCTCATACTCCCTCCGT 58.235 55.000 0.00 0.00 0.00 4.69
657 1001 1.677052 GTGTCTCATACTCCCTCCGTC 59.323 57.143 0.00 0.00 0.00 4.79
658 1002 1.320507 GTCTCATACTCCCTCCGTCC 58.679 60.000 0.00 0.00 0.00 4.79
659 1003 0.179026 TCTCATACTCCCTCCGTCCG 60.179 60.000 0.00 0.00 0.00 4.79
660 1004 1.152819 TCATACTCCCTCCGTCCGG 60.153 63.158 0.00 0.00 0.00 5.14
661 1005 1.152819 CATACTCCCTCCGTCCGGA 60.153 63.158 0.00 0.00 42.90 5.14
662 1006 0.754217 CATACTCCCTCCGTCCGGAA 60.754 60.000 5.23 0.00 44.66 4.30
663 1007 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
664 1008 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
665 1009 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
666 1010 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
667 1011 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
668 1012 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
669 1013 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
670 1014 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
671 1015 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
672 1016 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
673 1017 1.997606 CCGTCCGGAAATACTTGTCAC 59.002 52.381 5.23 0.00 37.50 3.67
674 1018 1.997606 CGTCCGGAAATACTTGTCACC 59.002 52.381 5.23 0.00 0.00 4.02
675 1019 2.610976 CGTCCGGAAATACTTGTCACCA 60.611 50.000 5.23 0.00 0.00 4.17
676 1020 3.404899 GTCCGGAAATACTTGTCACCAA 58.595 45.455 5.23 0.00 0.00 3.67
677 1021 3.816523 GTCCGGAAATACTTGTCACCAAA 59.183 43.478 5.23 0.00 0.00 3.28
678 1022 4.276431 GTCCGGAAATACTTGTCACCAAAA 59.724 41.667 5.23 0.00 0.00 2.44
679 1023 5.048294 GTCCGGAAATACTTGTCACCAAAAT 60.048 40.000 5.23 0.00 0.00 1.82
680 1024 5.048364 TCCGGAAATACTTGTCACCAAAATG 60.048 40.000 0.00 0.00 0.00 2.32
681 1025 5.048364 CCGGAAATACTTGTCACCAAAATGA 60.048 40.000 0.00 0.00 0.00 2.57
682 1026 6.442952 CGGAAATACTTGTCACCAAAATGAA 58.557 36.000 0.00 0.00 0.00 2.57
683 1027 7.090173 CGGAAATACTTGTCACCAAAATGAAT 58.910 34.615 0.00 0.00 0.00 2.57
684 1028 8.240682 CGGAAATACTTGTCACCAAAATGAATA 58.759 33.333 0.00 0.00 0.00 1.75
685 1029 9.921637 GGAAATACTTGTCACCAAAATGAATAA 57.078 29.630 0.00 0.00 0.00 1.40
689 1033 9.927668 ATACTTGTCACCAAAATGAATAAAAGG 57.072 29.630 0.00 0.00 0.00 3.11
690 1034 7.216494 ACTTGTCACCAAAATGAATAAAAGGG 58.784 34.615 0.00 0.00 0.00 3.95
691 1035 6.985653 TGTCACCAAAATGAATAAAAGGGA 57.014 33.333 0.00 0.00 0.00 4.20
692 1036 7.366847 TGTCACCAAAATGAATAAAAGGGAA 57.633 32.000 0.00 0.00 0.00 3.97
693 1037 7.972301 TGTCACCAAAATGAATAAAAGGGAAT 58.028 30.769 0.00 0.00 0.00 3.01
694 1038 7.877097 TGTCACCAAAATGAATAAAAGGGAATG 59.123 33.333 0.00 0.00 0.00 2.67
695 1039 6.878389 TCACCAAAATGAATAAAAGGGAATGC 59.122 34.615 0.00 0.00 0.00 3.56
696 1040 6.654161 CACCAAAATGAATAAAAGGGAATGCA 59.346 34.615 0.00 0.00 0.00 3.96
697 1041 7.337436 CACCAAAATGAATAAAAGGGAATGCAT 59.663 33.333 0.00 0.00 0.00 3.96
698 1042 7.553760 ACCAAAATGAATAAAAGGGAATGCATC 59.446 33.333 0.00 0.00 0.00 3.91
699 1043 7.771826 CCAAAATGAATAAAAGGGAATGCATCT 59.228 33.333 0.00 0.00 0.00 2.90
700 1044 9.169592 CAAAATGAATAAAAGGGAATGCATCTT 57.830 29.630 0.00 0.00 0.00 2.40
701 1045 9.743581 AAAATGAATAAAAGGGAATGCATCTTT 57.256 25.926 0.00 2.58 32.77 2.52
704 1048 9.991906 ATGAATAAAAGGGAATGCATCTTTATG 57.008 29.630 11.12 0.00 36.09 1.90
705 1049 8.980596 TGAATAAAAGGGAATGCATCTTTATGT 58.019 29.630 11.12 1.36 35.38 2.29
713 1057 9.646522 AGGGAATGCATCTTTATGTATTTTAGT 57.353 29.630 0.00 0.00 45.13 2.24
750 1094 9.656040 TCCATTTTTATCCATTTTGATGACAAG 57.344 29.630 0.00 0.00 37.32 3.16
751 1095 9.439500 CCATTTTTATCCATTTTGATGACAAGT 57.561 29.630 0.00 0.00 37.32 3.16
758 1102 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
759 1103 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
760 1104 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
761 1105 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
762 1106 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
763 1107 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
764 1108 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
765 1109 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
766 1110 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
767 1111 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
768 1112 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
769 1113 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
770 1114 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
771 1115 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
772 1116 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
773 1117 0.038744 TTTCGGACGGAGGGAGTACT 59.961 55.000 0.00 0.00 0.00 2.73
774 1118 0.911769 TTCGGACGGAGGGAGTACTA 59.088 55.000 0.00 0.00 0.00 1.82
775 1119 1.135094 TCGGACGGAGGGAGTACTAT 58.865 55.000 0.00 0.00 0.00 2.12
776 1120 2.329267 TCGGACGGAGGGAGTACTATA 58.671 52.381 0.00 0.00 0.00 1.31
777 1121 2.909006 TCGGACGGAGGGAGTACTATAT 59.091 50.000 0.00 0.00 0.00 0.86
778 1122 4.096681 TCGGACGGAGGGAGTACTATATA 58.903 47.826 0.00 0.00 0.00 0.86
779 1123 4.161189 TCGGACGGAGGGAGTACTATATAG 59.839 50.000 8.27 8.27 0.00 1.31
780 1124 4.081198 CGGACGGAGGGAGTACTATATAGT 60.081 50.000 19.07 19.07 40.24 2.12
781 1125 5.127845 CGGACGGAGGGAGTACTATATAGTA 59.872 48.000 17.03 17.03 37.73 1.82
822 1166 5.465056 TGAGAAATTTTCATGCCGGTTTTTC 59.535 36.000 11.53 0.00 0.00 2.29
824 1168 4.350368 AATTTTCATGCCGGTTTTTCCT 57.650 36.364 1.90 0.00 0.00 3.36
825 1169 5.476091 AATTTTCATGCCGGTTTTTCCTA 57.524 34.783 1.90 0.00 0.00 2.94
826 1170 3.926821 TTTCATGCCGGTTTTTCCTAC 57.073 42.857 1.90 0.00 0.00 3.18
828 1172 3.080300 TCATGCCGGTTTTTCCTACAT 57.920 42.857 1.90 0.00 32.19 2.29
829 1173 2.752354 TCATGCCGGTTTTTCCTACATG 59.248 45.455 1.90 4.90 42.93 3.21
830 1174 2.279935 TGCCGGTTTTTCCTACATGT 57.720 45.000 1.90 2.69 0.00 3.21
831 1175 1.883275 TGCCGGTTTTTCCTACATGTG 59.117 47.619 9.11 0.00 0.00 3.21
832 1176 1.883926 GCCGGTTTTTCCTACATGTGT 59.116 47.619 9.11 0.00 0.00 3.72
834 1178 3.610821 GCCGGTTTTTCCTACATGTGTTC 60.611 47.826 9.11 0.00 0.00 3.18
844 1188 7.639113 TTCCTACATGTGTTCTTTTGAAACT 57.361 32.000 9.11 0.00 40.53 2.66
897 1258 3.624410 GTCGTTCCTTTTTACACCACTGT 59.376 43.478 0.00 0.00 0.00 3.55
988 1350 2.808919 CTTACCACTGTCTCAGGAGGA 58.191 52.381 14.17 0.00 35.40 3.71
1025 1387 2.815647 GCCGAACTCTCTTGCCCG 60.816 66.667 0.00 0.00 0.00 6.13
1152 1703 3.168528 AAGACCAGGTGCACCGGT 61.169 61.111 36.52 36.52 42.60 5.28
1225 1776 1.227999 TGCAGCCGACTTGTAAGCAC 61.228 55.000 0.00 0.00 0.00 4.40
1276 1829 1.064825 ATCTTCAAAGTGACCGGGGT 58.935 50.000 6.32 0.00 0.00 4.95
1277 1830 0.395312 TCTTCAAAGTGACCGGGGTC 59.605 55.000 6.32 10.95 44.77 4.46
1281 1834 1.460689 AAAGTGACCGGGGTCCTGA 60.461 57.895 14.95 0.00 43.97 3.86
1296 1849 3.696548 GGTCCTGACATTTTGGGAGATTC 59.303 47.826 0.00 0.00 0.00 2.52
1298 1851 4.397417 GTCCTGACATTTTGGGAGATTCTG 59.603 45.833 0.00 0.00 0.00 3.02
1299 1852 4.043310 TCCTGACATTTTGGGAGATTCTGT 59.957 41.667 0.00 0.00 0.00 3.41
1300 1853 5.250543 TCCTGACATTTTGGGAGATTCTGTA 59.749 40.000 0.00 0.00 0.00 2.74
1306 1871 5.512942 TTTTGGGAGATTCTGTATGTGGA 57.487 39.130 0.00 0.00 0.00 4.02
1352 1917 5.185056 TCGAAACCATGATGTAGAGTTCAGA 59.815 40.000 0.00 0.00 0.00 3.27
1353 1918 6.045318 CGAAACCATGATGTAGAGTTCAGAT 58.955 40.000 0.00 0.00 0.00 2.90
1571 2347 1.683385 GCAAGGCTTGGGTCCAATATC 59.317 52.381 27.25 4.04 35.20 1.63
1602 2383 0.104671 GGCCTCTTGTTTTGCTGCAA 59.895 50.000 11.69 11.69 0.00 4.08
1633 2414 3.251004 GTGGTCACTCACAGAATTGGTTC 59.749 47.826 0.00 0.00 37.57 3.62
1678 2459 1.273327 AGGTTTTGCACTTATGGCAGC 59.727 47.619 0.00 0.00 43.05 5.25
1687 2468 2.874648 CTTATGGCAGCCTGGACGCA 62.875 60.000 14.15 0.00 0.00 5.24
1690 2471 2.590007 GGCAGCCTGGACGCATAG 60.590 66.667 3.29 0.00 0.00 2.23
1767 2548 1.421410 GCGTTACATCTCCACCTGCG 61.421 60.000 0.00 0.00 0.00 5.18
1775 2556 3.723235 CTCCACCTGCGGGACATCG 62.723 68.421 21.41 0.48 36.25 3.84
1778 2559 4.129737 ACCTGCGGGACATCGTCG 62.130 66.667 21.41 0.00 36.25 5.12
1801 2582 2.114616 ACCTCCATCTTCATCGAGCTT 58.885 47.619 0.00 0.00 0.00 3.74
1829 2610 4.972751 ACAACCATGGCTTTTTATTGGT 57.027 36.364 13.04 0.00 42.35 3.67
1874 2655 2.892852 CCAATCCACCAGACACAATGTT 59.107 45.455 0.00 0.00 0.00 2.71
2109 2893 8.887717 ACTCTTTGAGTAATGCATATTCTGTTC 58.112 33.333 0.00 0.00 41.51 3.18
2145 2929 7.573968 AAGACTTGAATTGACTTAAAGTGCT 57.426 32.000 0.00 0.00 38.46 4.40
2153 2937 1.464997 GACTTAAAGTGCTGGCCTTCG 59.535 52.381 3.32 0.00 0.00 3.79
2234 3026 4.713553 TGAGTGGTGAATCTGTAAGCAAA 58.286 39.130 0.00 0.00 0.00 3.68
2287 3108 5.443261 ACTATACATTTTTCATGCGATGCG 58.557 37.500 0.00 0.00 0.00 4.73
2334 3155 8.424899 TGTGAACCACGACAGCATGTTAAATC 62.425 42.308 0.00 0.00 42.05 2.17
2377 3198 8.021396 CCCTCTGTTTTTCCTTTTCTTATTACG 58.979 37.037 0.00 0.00 0.00 3.18
2388 3209 1.488812 TCTTATTACGGGCTGGTGCAT 59.511 47.619 0.00 0.00 41.91 3.96
2450 3271 4.153475 GTGGTAAGCGCTTGTTTTCTGATA 59.847 41.667 32.23 5.28 0.00 2.15
2965 4118 1.737236 TGTATTCCTGAATGCACACGC 59.263 47.619 6.57 0.00 38.24 5.34
3170 4467 3.273434 TGGCACTCTGAAATCTATGTGC 58.727 45.455 7.29 7.29 46.67 4.57
3171 4468 3.582444 GCACTCTGAAATCTATGTGCG 57.418 47.619 0.00 0.00 40.67 5.34
3193 4491 3.795688 TCTGTCAGATGAGGGCTTTTT 57.204 42.857 0.00 0.00 0.00 1.94
3300 4598 4.100498 TGGTCGATTAAGGATTGGTAGGTC 59.900 45.833 0.00 0.00 0.00 3.85
3333 4631 7.919621 CAGCAGGATTCAGATTTTATTTTCCTC 59.080 37.037 0.00 0.00 30.05 3.71
3687 4991 4.832266 ACCCTGTTGAATTTCTGCAATGTA 59.168 37.500 0.00 0.00 0.00 2.29
3726 8820 3.197766 CACCTAACTGAGTCAGCCCATTA 59.802 47.826 20.31 9.94 34.37 1.90
3825 8925 9.898152 AAGATGGTTTCCAAAACTTAAATTTGA 57.102 25.926 12.62 0.00 39.56 2.69
3876 8976 6.574350 ACTTAACCGTATCATCTCTGAAAGG 58.426 40.000 0.00 0.00 34.37 3.11
3916 9040 4.694233 ACAGTCTGCCTGCCTGCG 62.694 66.667 0.00 0.00 45.68 5.18
3918 9042 3.946201 AGTCTGCCTGCCTGCGTT 61.946 61.111 0.00 0.00 0.00 4.84
3919 9043 2.047274 GTCTGCCTGCCTGCGTTA 60.047 61.111 0.00 0.00 0.00 3.18
3922 9046 1.672356 CTGCCTGCCTGCGTTACTT 60.672 57.895 0.00 0.00 0.00 2.24
3964 9092 2.549754 ACACTTGGTCGAAAGAAGCATG 59.450 45.455 3.89 0.00 45.01 4.06
3972 9114 5.645929 TGGTCGAAAGAAGCATGCTAAAATA 59.354 36.000 23.00 0.60 45.01 1.40
4008 9150 5.155278 AGTGTTGTATACATCAACCGGAA 57.845 39.130 16.34 0.00 42.82 4.30
4016 9158 7.728148 TGTATACATCAACCGGAAGCTTATTA 58.272 34.615 9.46 0.00 0.00 0.98
4017 9159 8.372459 TGTATACATCAACCGGAAGCTTATTAT 58.628 33.333 9.46 0.00 0.00 1.28
4018 9160 9.865321 GTATACATCAACCGGAAGCTTATTATA 57.135 33.333 9.46 0.00 0.00 0.98
4226 9368 4.164843 TGGGCCTGGAGAAATATTGTAC 57.835 45.455 4.53 0.00 0.00 2.90
4227 9369 3.785887 TGGGCCTGGAGAAATATTGTACT 59.214 43.478 4.53 0.00 0.00 2.73
4228 9370 4.137543 GGGCCTGGAGAAATATTGTACTG 58.862 47.826 0.84 0.00 0.00 2.74
4229 9371 3.565902 GGCCTGGAGAAATATTGTACTGC 59.434 47.826 0.00 0.00 0.00 4.40
4230 9372 4.199310 GCCTGGAGAAATATTGTACTGCA 58.801 43.478 0.00 9.83 0.00 4.41
4231 9373 4.823989 GCCTGGAGAAATATTGTACTGCAT 59.176 41.667 0.00 0.00 31.20 3.96
4235 9377 7.879677 CCTGGAGAAATATTGTACTGCATATGA 59.120 37.037 6.97 0.00 31.20 2.15
4252 9394 7.475015 TGCATATGATTTTTGTAAGCTCTGAC 58.525 34.615 6.97 0.00 0.00 3.51
4259 9401 1.783284 TGTAAGCTCTGACGTGCTTG 58.217 50.000 18.15 0.00 46.17 4.01
4262 9404 1.502163 AAGCTCTGACGTGCTTGTGC 61.502 55.000 9.78 2.21 45.31 4.57
4275 9417 1.394697 CTTGTGCAGTTTTAACCGCG 58.605 50.000 0.00 0.00 35.12 6.46
4289 9431 3.967734 CCGCGTGGTAAAAGATGTG 57.032 52.632 6.91 0.00 0.00 3.21
4295 9437 5.387279 CGCGTGGTAAAAGATGTGTAAAAT 58.613 37.500 0.00 0.00 0.00 1.82
4297 9439 6.375377 GCGTGGTAAAAGATGTGTAAAATCA 58.625 36.000 0.00 0.00 31.01 2.57
4300 9442 8.073768 CGTGGTAAAAGATGTGTAAAATCAACT 58.926 33.333 0.00 0.00 31.01 3.16
4302 9444 7.865385 TGGTAAAAGATGTGTAAAATCAACTGC 59.135 33.333 0.00 0.00 31.01 4.40
4305 9447 6.882610 AAGATGTGTAAAATCAACTGCTGA 57.117 33.333 0.00 0.00 31.01 4.26
4309 9451 5.368145 TGTGTAAAATCAACTGCTGACTCT 58.632 37.500 0.00 0.00 36.69 3.24
4312 9454 3.777106 AAATCAACTGCTGACTCTCCA 57.223 42.857 0.00 0.00 36.69 3.86
4313 9455 3.996921 AATCAACTGCTGACTCTCCAT 57.003 42.857 0.00 0.00 36.69 3.41
4325 9467 5.462530 TGACTCTCCATCTCGTTGTAAAA 57.537 39.130 0.00 0.00 0.00 1.52
4326 9468 6.037786 TGACTCTCCATCTCGTTGTAAAAT 57.962 37.500 0.00 0.00 0.00 1.82
4331 9510 3.938963 TCCATCTCGTTGTAAAATCCTGC 59.061 43.478 0.00 0.00 0.00 4.85
4340 9519 5.617751 CGTTGTAAAATCCTGCTTTCTCCTG 60.618 44.000 0.00 0.00 0.00 3.86
4358 9537 1.059584 TGGAGTTCTTCACAGGCCCA 61.060 55.000 0.00 0.00 0.00 5.36
4359 9538 0.329596 GGAGTTCTTCACAGGCCCAT 59.670 55.000 0.00 0.00 0.00 4.00
4360 9539 1.680249 GGAGTTCTTCACAGGCCCATC 60.680 57.143 0.00 0.00 0.00 3.51
4403 9683 4.655963 AGACTTAGGCATGAACAATGTGT 58.344 39.130 0.00 0.00 38.65 3.72
4464 9749 5.060506 TCTCCTGTCGCAAATTAAACTTGA 58.939 37.500 5.15 0.00 0.00 3.02
4580 9909 5.126067 AGGCAGACCAATAATATGTCACAC 58.874 41.667 0.00 0.00 39.06 3.82
4581 9910 4.024893 GGCAGACCAATAATATGTCACACG 60.025 45.833 0.00 0.00 35.26 4.49
4585 9914 4.523083 ACCAATAATATGTCACACGGCTT 58.477 39.130 0.00 0.00 0.00 4.35
4587 9916 5.526111 ACCAATAATATGTCACACGGCTTAC 59.474 40.000 0.00 0.00 0.00 2.34
4650 9979 1.338200 CCGTCCAAAGAAGTCTCCAGG 60.338 57.143 0.00 0.00 0.00 4.45
4651 9980 1.814793 GTCCAAAGAAGTCTCCAGGC 58.185 55.000 0.00 0.00 0.00 4.85
4652 9981 1.349357 GTCCAAAGAAGTCTCCAGGCT 59.651 52.381 0.00 0.00 0.00 4.58
4653 9982 1.625818 TCCAAAGAAGTCTCCAGGCTC 59.374 52.381 0.00 0.00 0.00 4.70
4654 9983 1.627834 CCAAAGAAGTCTCCAGGCTCT 59.372 52.381 0.00 0.00 0.00 4.09
4656 9985 3.118811 CCAAAGAAGTCTCCAGGCTCTAG 60.119 52.174 0.00 0.00 0.00 2.43
4657 9986 1.775385 AGAAGTCTCCAGGCTCTAGC 58.225 55.000 0.00 0.00 41.14 3.42
4659 9988 1.040339 AAGTCTCCAGGCTCTAGCGG 61.040 60.000 0.00 0.00 43.26 5.52
4660 9989 1.454111 GTCTCCAGGCTCTAGCGGA 60.454 63.158 0.00 0.00 43.26 5.54
4661 9990 0.825840 GTCTCCAGGCTCTAGCGGAT 60.826 60.000 0.00 0.00 43.26 4.18
4664 9993 1.834378 CCAGGCTCTAGCGGATGGA 60.834 63.158 11.88 0.00 40.22 3.41
4665 9994 1.365633 CAGGCTCTAGCGGATGGAC 59.634 63.158 0.00 0.00 43.26 4.02
4666 9995 1.075970 AGGCTCTAGCGGATGGACA 60.076 57.895 0.00 0.00 43.26 4.02
4667 9996 1.112315 AGGCTCTAGCGGATGGACAG 61.112 60.000 0.00 0.00 43.26 3.51
4668 9997 1.109920 GGCTCTAGCGGATGGACAGA 61.110 60.000 0.00 0.00 43.26 3.41
4669 9998 0.031449 GCTCTAGCGGATGGACAGAC 59.969 60.000 0.00 0.00 0.00 3.51
4670 9999 1.393603 CTCTAGCGGATGGACAGACA 58.606 55.000 0.00 0.00 0.00 3.41
4671 10000 1.066303 CTCTAGCGGATGGACAGACAC 59.934 57.143 0.00 0.00 0.00 3.67
4672 10001 0.817654 CTAGCGGATGGACAGACACA 59.182 55.000 0.00 0.00 0.00 3.72
4673 10002 1.410517 CTAGCGGATGGACAGACACAT 59.589 52.381 0.00 0.00 0.00 3.21
4692 10021 3.244181 ACATGATGTGTTTTCCCTTTGCC 60.244 43.478 0.00 0.00 38.01 4.52
4693 10022 1.691434 TGATGTGTTTTCCCTTTGCCC 59.309 47.619 0.00 0.00 0.00 5.36
4695 10024 1.408969 TGTGTTTTCCCTTTGCCCTC 58.591 50.000 0.00 0.00 0.00 4.30
4696 10025 1.063266 TGTGTTTTCCCTTTGCCCTCT 60.063 47.619 0.00 0.00 0.00 3.69
4697 10026 1.613925 GTGTTTTCCCTTTGCCCTCTC 59.386 52.381 0.00 0.00 0.00 3.20
4701 10033 2.124942 CCCTTTGCCCTCTCGAGC 60.125 66.667 7.81 0.00 0.00 5.03
4710 10042 2.420890 CTCTCGAGCATGGGAGCC 59.579 66.667 7.81 0.00 34.23 4.70
4714 10046 0.465097 CTCGAGCATGGGAGCCATTT 60.465 55.000 0.00 0.00 42.23 2.32
4716 10048 1.779025 CGAGCATGGGAGCCATTTCG 61.779 60.000 0.00 0.00 42.23 3.46
4722 10054 1.533625 TGGGAGCCATTTCGTTCAAG 58.466 50.000 0.00 0.00 0.00 3.02
4723 10055 1.202879 TGGGAGCCATTTCGTTCAAGT 60.203 47.619 0.00 0.00 0.00 3.16
4727 10059 3.981416 GGAGCCATTTCGTTCAAGTTTTC 59.019 43.478 0.00 0.00 0.00 2.29
4728 10060 4.499019 GGAGCCATTTCGTTCAAGTTTTCA 60.499 41.667 0.00 0.00 0.00 2.69
4729 10061 5.200368 AGCCATTTCGTTCAAGTTTTCAT 57.800 34.783 0.00 0.00 0.00 2.57
4735 10069 7.865385 CCATTTCGTTCAAGTTTTCATAAGGAA 59.135 33.333 0.00 0.00 0.00 3.36
4851 10186 3.768922 GGCTGGCAGCTCGTCTCT 61.769 66.667 35.73 0.00 41.99 3.10
4856 10191 0.811915 TGGCAGCTCGTCTCTAGAAC 59.188 55.000 0.00 0.00 0.00 3.01
4857 10192 0.811915 GGCAGCTCGTCTCTAGAACA 59.188 55.000 0.00 0.00 0.00 3.18
5111 10457 2.270352 GTGAAGTCACCCCACATCAA 57.730 50.000 0.00 0.00 40.85 2.57
5127 10473 2.254546 TCAAATGTGTCGTTCCAGCT 57.745 45.000 0.00 0.00 0.00 4.24
5275 10647 0.603707 CTCCGTTGCCTGAGCTTCAA 60.604 55.000 0.00 0.00 40.80 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 13 7.885922 TGTCCACCAGTAAAAGAAATATAGCAA 59.114 33.333 0.00 0.00 0.00 3.91
22 24 4.401202 ACCAAAGTTGTCCACCAGTAAAAG 59.599 41.667 0.00 0.00 0.00 2.27
31 33 6.935208 ACTTATTCTCTACCAAAGTTGTCCAC 59.065 38.462 0.00 0.00 0.00 4.02
60 63 4.917415 GGGAAAATTCACACATCTCAAACG 59.083 41.667 0.00 0.00 0.00 3.60
64 67 6.070656 AGAAAGGGAAAATTCACACATCTCA 58.929 36.000 0.00 0.00 31.44 3.27
65 68 6.581171 AGAAAGGGAAAATTCACACATCTC 57.419 37.500 0.00 0.00 31.44 2.75
101 117 5.177511 TGTGTTCTTAAACTCAGCGAGAATG 59.822 40.000 11.64 0.00 34.78 2.67
108 124 9.495754 GAATTATCATGTGTTCTTAAACTCAGC 57.504 33.333 0.00 0.00 40.91 4.26
132 148 6.072175 GGAACAAAGCAGTGGTATACATTGAA 60.072 38.462 9.94 0.00 38.97 2.69
133 149 5.414454 GGAACAAAGCAGTGGTATACATTGA 59.586 40.000 9.94 0.00 38.97 2.57
171 187 9.624697 TGCAATGTTCTCTTATCATTACAAAAC 57.375 29.630 0.00 0.00 31.76 2.43
183 199 3.325870 CACGGTCTGCAATGTTCTCTTA 58.674 45.455 0.00 0.00 0.00 2.10
201 218 1.667236 ATGTCACCATACATGCCACG 58.333 50.000 0.00 0.00 38.65 4.94
302 326 4.933400 ACTTTCTAGCTTTCGCGGAATAAA 59.067 37.500 6.13 0.00 42.32 1.40
309 333 2.029728 CCATGACTTTCTAGCTTTCGCG 59.970 50.000 0.00 0.00 42.32 5.87
312 336 3.282885 CCCCCATGACTTTCTAGCTTTC 58.717 50.000 0.00 0.00 0.00 2.62
323 347 1.288633 TGATGATTTGCCCCCATGACT 59.711 47.619 0.00 0.00 0.00 3.41
379 403 3.795877 TCGTTAACTTCTGGTTTCGGTT 58.204 40.909 3.71 0.00 39.17 4.44
396 420 4.652822 AGGACAAAATTAGAAGCCTCGTT 58.347 39.130 0.00 0.00 0.00 3.85
444 769 8.678199 AGCTTTTACAAAACTAGATAATGCCTC 58.322 33.333 0.00 0.00 0.00 4.70
445 770 8.581253 AGCTTTTACAAAACTAGATAATGCCT 57.419 30.769 0.00 0.00 0.00 4.75
563 907 7.495055 AGTATGAAATTCATTGGAATCAAGGC 58.505 34.615 14.15 0.00 42.87 4.35
587 931 5.639506 AGAATACAAAATGAGACCGTGTGAG 59.360 40.000 0.00 0.00 0.00 3.51
605 949 4.379339 AGAGACAGCGAGGAAAGAATAC 57.621 45.455 0.00 0.00 0.00 1.89
623 967 4.298744 TGAGACACGCAGAATCATAGAG 57.701 45.455 0.00 0.00 0.00 2.43
628 972 3.181486 GGAGTATGAGACACGCAGAATCA 60.181 47.826 0.00 0.00 0.00 2.57
629 973 3.376540 GGAGTATGAGACACGCAGAATC 58.623 50.000 0.00 0.00 0.00 2.52
633 977 1.066303 GAGGGAGTATGAGACACGCAG 59.934 57.143 0.00 0.00 34.58 5.18
636 980 0.663688 CGGAGGGAGTATGAGACACG 59.336 60.000 0.00 0.00 0.00 4.49
639 983 1.320507 GGACGGAGGGAGTATGAGAC 58.679 60.000 0.00 0.00 0.00 3.36
644 988 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.000 13.64 0.00 46.06 2.12
647 991 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
648 992 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
649 993 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
650 994 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
651 995 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
652 996 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
653 997 1.997606 GTGACAAGTATTTCCGGACGG 59.002 52.381 1.83 3.96 0.00 4.79
654 998 1.997606 GGTGACAAGTATTTCCGGACG 59.002 52.381 1.83 0.00 0.00 4.79
655 999 3.048337 TGGTGACAAGTATTTCCGGAC 57.952 47.619 1.83 0.00 37.44 4.79
668 1012 6.985653 TCCCTTTTATTCATTTTGGTGACA 57.014 33.333 0.00 0.00 39.83 3.58
669 1013 7.148423 GCATTCCCTTTTATTCATTTTGGTGAC 60.148 37.037 0.00 0.00 0.00 3.67
670 1014 6.878389 GCATTCCCTTTTATTCATTTTGGTGA 59.122 34.615 0.00 0.00 0.00 4.02
671 1015 6.654161 TGCATTCCCTTTTATTCATTTTGGTG 59.346 34.615 0.00 0.00 0.00 4.17
672 1016 6.777782 TGCATTCCCTTTTATTCATTTTGGT 58.222 32.000 0.00 0.00 0.00 3.67
673 1017 7.771826 AGATGCATTCCCTTTTATTCATTTTGG 59.228 33.333 0.00 0.00 0.00 3.28
674 1018 8.726870 AGATGCATTCCCTTTTATTCATTTTG 57.273 30.769 0.00 0.00 0.00 2.44
675 1019 9.743581 AAAGATGCATTCCCTTTTATTCATTTT 57.256 25.926 0.00 0.00 0.00 1.82
678 1022 9.991906 CATAAAGATGCATTCCCTTTTATTCAT 57.008 29.630 14.83 2.72 32.92 2.57
679 1023 8.980596 ACATAAAGATGCATTCCCTTTTATTCA 58.019 29.630 14.83 0.76 36.43 2.57
687 1031 9.646522 ACTAAAATACATAAAGATGCATTCCCT 57.353 29.630 0.00 0.00 36.43 4.20
724 1068 9.656040 CTTGTCATCAAAATGGATAAAAATGGA 57.344 29.630 0.00 0.00 33.42 3.41
725 1069 9.439500 ACTTGTCATCAAAATGGATAAAAATGG 57.561 29.630 0.00 0.00 33.42 3.16
733 1077 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
734 1078 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
735 1079 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
736 1080 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
737 1081 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
738 1082 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
739 1083 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
740 1084 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
741 1085 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
742 1086 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
743 1087 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
744 1088 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
745 1089 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
746 1090 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
747 1091 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
748 1092 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
749 1093 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
750 1094 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
751 1095 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
752 1096 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
753 1097 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
754 1098 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
755 1099 0.911769 TAGTACTCCCTCCGTCCGAA 59.088 55.000 0.00 0.00 0.00 4.30
756 1100 1.135094 ATAGTACTCCCTCCGTCCGA 58.865 55.000 0.00 0.00 0.00 4.55
757 1101 2.847327 TATAGTACTCCCTCCGTCCG 57.153 55.000 0.00 0.00 0.00 4.79
758 1102 5.434182 ACTATATAGTACTCCCTCCGTCC 57.566 47.826 13.88 0.00 34.13 4.79
759 1103 7.390027 TGTTACTATATAGTACTCCCTCCGTC 58.610 42.308 20.01 4.45 38.43 4.79
760 1104 7.321717 TGTTACTATATAGTACTCCCTCCGT 57.678 40.000 20.01 0.00 38.43 4.69
761 1105 7.498570 GGATGTTACTATATAGTACTCCCTCCG 59.501 44.444 20.01 0.00 38.43 4.63
762 1106 8.334734 TGGATGTTACTATATAGTACTCCCTCC 58.665 40.741 25.35 22.04 38.43 4.30
763 1107 9.750783 TTGGATGTTACTATATAGTACTCCCTC 57.249 37.037 25.35 17.32 38.43 4.30
774 1118 9.679661 TCACATGTTGTTTGGATGTTACTATAT 57.320 29.630 0.00 0.00 0.00 0.86
775 1119 9.161629 CTCACATGTTGTTTGGATGTTACTATA 57.838 33.333 0.00 0.00 0.00 1.31
776 1120 7.882791 TCTCACATGTTGTTTGGATGTTACTAT 59.117 33.333 0.00 0.00 0.00 2.12
777 1121 7.220740 TCTCACATGTTGTTTGGATGTTACTA 58.779 34.615 0.00 0.00 0.00 1.82
778 1122 6.061441 TCTCACATGTTGTTTGGATGTTACT 58.939 36.000 0.00 0.00 0.00 2.24
779 1123 6.312399 TCTCACATGTTGTTTGGATGTTAC 57.688 37.500 0.00 0.00 0.00 2.50
780 1124 6.951062 TTCTCACATGTTGTTTGGATGTTA 57.049 33.333 0.00 0.00 0.00 2.41
781 1125 5.850557 TTCTCACATGTTGTTTGGATGTT 57.149 34.783 0.00 0.00 0.00 2.71
822 1166 8.702163 AAAAGTTTCAAAAGAACACATGTAGG 57.298 30.769 0.00 0.00 0.00 3.18
867 1228 6.292542 GGTGTAAAAAGGAACGACAACTAGTC 60.293 42.308 0.00 0.00 44.02 2.59
897 1258 5.060506 TGCGGACAGAAACTCAAAAGATTA 58.939 37.500 0.00 0.00 0.00 1.75
966 1328 1.205893 CTCCTGAGACAGTGGTAAGCC 59.794 57.143 0.00 0.00 0.00 4.35
982 1344 2.883828 CGGTGTGCTTGGTCCTCCT 61.884 63.158 0.00 0.00 34.23 3.69
988 1350 2.111043 CTCACCGGTGTGCTTGGT 59.889 61.111 32.74 0.00 42.46 3.67
1008 1370 2.815647 CGGGCAAGAGAGTTCGGC 60.816 66.667 0.00 0.00 0.00 5.54
1011 1373 0.884704 TTGTGCGGGCAAGAGAGTTC 60.885 55.000 0.00 0.00 0.00 3.01
1014 1376 2.671177 CGTTGTGCGGGCAAGAGAG 61.671 63.158 0.00 0.00 36.85 3.20
1225 1776 2.098443 GCGAGGAGTAAAGACCAGAGAG 59.902 54.545 0.00 0.00 0.00 3.20
1276 1829 4.043310 ACAGAATCTCCCAAAATGTCAGGA 59.957 41.667 0.00 0.00 0.00 3.86
1277 1830 4.338879 ACAGAATCTCCCAAAATGTCAGG 58.661 43.478 0.00 0.00 0.00 3.86
1281 1834 5.653769 CCACATACAGAATCTCCCAAAATGT 59.346 40.000 0.00 0.00 0.00 2.71
1296 1849 7.148356 CCATCGGATTTGATTATCCACATACAG 60.148 40.741 0.00 0.00 43.60 2.74
1298 1851 6.655003 ACCATCGGATTTGATTATCCACATAC 59.345 38.462 0.00 0.00 43.60 2.39
1299 1852 6.778821 ACCATCGGATTTGATTATCCACATA 58.221 36.000 0.00 0.00 43.60 2.29
1300 1853 5.634118 ACCATCGGATTTGATTATCCACAT 58.366 37.500 0.00 0.00 43.60 3.21
1306 1871 5.871524 CGATCAGACCATCGGATTTGATTAT 59.128 40.000 0.00 0.00 41.71 1.28
1352 1917 5.232463 CAATGCCTGAGTTGCAAAACTAAT 58.768 37.500 0.00 0.00 42.92 1.73
1353 1918 4.501229 CCAATGCCTGAGTTGCAAAACTAA 60.501 41.667 0.00 0.00 42.92 2.24
1571 2347 1.067516 CAAGAGGCCAAAACACACCAG 59.932 52.381 5.01 0.00 0.00 4.00
1602 2383 0.473755 TGAGTGACCACTGGCAATGT 59.526 50.000 7.47 0.00 42.66 2.71
1678 2459 1.414181 ACTTGATCCTATGCGTCCAGG 59.586 52.381 0.00 0.00 0.00 4.45
1687 2468 5.248640 CCCGCATGATTTACTTGATCCTAT 58.751 41.667 0.00 0.00 0.00 2.57
1690 2471 2.030805 GCCCGCATGATTTACTTGATCC 60.031 50.000 0.00 0.00 0.00 3.36
1767 2548 1.359475 GAGGTAGCGACGATGTCCC 59.641 63.158 0.00 0.00 0.00 4.46
1775 2556 2.605823 CGATGAAGATGGAGGTAGCGAC 60.606 54.545 0.00 0.00 0.00 5.19
1778 2559 2.609244 GCTCGATGAAGATGGAGGTAGC 60.609 54.545 0.00 0.00 35.51 3.58
1874 2655 7.445402 CCAAACAAAAGATGAGAAGGAGAACTA 59.555 37.037 0.00 0.00 0.00 2.24
2109 2893 9.185192 GTCAATTCAAGTCTTTGGTAATTTGAG 57.815 33.333 0.00 0.00 34.97 3.02
2153 2937 2.001269 ACCATCTACCACCCCTGCC 61.001 63.158 0.00 0.00 0.00 4.85
2287 3108 5.221244 ACAGTCAAGCCAGTTAAAATGAACC 60.221 40.000 0.00 0.00 0.00 3.62
2334 3155 1.961277 GGGTGTCAGCGTCACAAGG 60.961 63.158 10.10 0.00 37.52 3.61
2377 3198 2.263540 CAGCAAATGCACCAGCCC 59.736 61.111 8.28 0.00 45.16 5.19
2388 3209 4.952957 TGGCAGTTTATAATAGGCAGCAAA 59.047 37.500 0.00 0.00 0.00 3.68
2450 3271 0.108585 ATAAGGTGGCGCCGATGAAT 59.891 50.000 23.90 9.83 43.70 2.57
2965 4118 8.013378 GTGGCATGATGAAATGAAAAGAAAAAG 58.987 33.333 0.00 0.00 0.00 2.27
3170 4467 0.534412 AGCCCTCATCTGACAGAACG 59.466 55.000 9.70 4.08 0.00 3.95
3171 4468 2.777832 AAGCCCTCATCTGACAGAAC 57.222 50.000 9.70 0.00 0.00 3.01
3193 4491 9.974980 GGTAAATGTTTCCTGTCAAGATAAAAA 57.025 29.630 0.00 0.00 0.00 1.94
3300 4598 3.049708 TCTGAATCCTGCTGTTGTCAG 57.950 47.619 7.78 7.78 43.87 3.51
3349 4647 9.066892 TCCTACATATGCCAAACTATGATTTTC 57.933 33.333 1.58 0.00 0.00 2.29
3353 4651 9.017509 CAATTCCTACATATGCCAAACTATGAT 57.982 33.333 1.58 0.00 0.00 2.45
3426 4724 4.514401 GTTCCCGACCAGTCTTATTGAAT 58.486 43.478 0.00 0.00 0.00 2.57
3563 4867 7.092137 CATGATCATGTAACCACAGAACAAT 57.908 36.000 24.87 0.00 38.30 2.71
3667 4971 8.169839 CAAGATACATTGCAGAAATTCAACAG 57.830 34.615 0.00 0.00 0.00 3.16
3726 8820 4.692625 GGCAATAGACGAATGCAGTCATAT 59.307 41.667 15.31 6.36 41.80 1.78
3825 8925 5.128827 AGTTGTCACAGAATATACCGGTCAT 59.871 40.000 12.40 2.30 0.00 3.06
3876 8976 3.485947 TCAGTTTGAAGCACAACACAC 57.514 42.857 0.00 0.00 38.29 3.82
3916 9040 3.056035 CACCCCTCCAGTCAGTAAGTAAC 60.056 52.174 0.00 0.00 0.00 2.50
3918 9042 2.111255 ACACCCCTCCAGTCAGTAAGTA 59.889 50.000 0.00 0.00 0.00 2.24
3919 9043 1.132817 ACACCCCTCCAGTCAGTAAGT 60.133 52.381 0.00 0.00 0.00 2.24
3922 9046 1.640917 GAACACCCCTCCAGTCAGTA 58.359 55.000 0.00 0.00 0.00 2.74
3964 9092 7.502561 ACACTCAATATGGAACCCTATTTTAGC 59.497 37.037 0.00 0.00 0.00 3.09
3972 9114 4.657814 ACAACACTCAATATGGAACCCT 57.342 40.909 0.00 0.00 0.00 4.34
4016 9158 7.404671 AAACAGGAAGACACAAAACACTTAT 57.595 32.000 0.00 0.00 0.00 1.73
4017 9159 6.827586 AAACAGGAAGACACAAAACACTTA 57.172 33.333 0.00 0.00 0.00 2.24
4018 9160 5.722021 AAACAGGAAGACACAAAACACTT 57.278 34.783 0.00 0.00 0.00 3.16
4019 9161 5.242838 TCAAAACAGGAAGACACAAAACACT 59.757 36.000 0.00 0.00 0.00 3.55
4182 9324 2.159517 GCGGTTTGTAGCCATCTTTGAG 60.160 50.000 0.00 0.00 0.00 3.02
4226 9368 7.642978 GTCAGAGCTTACAAAAATCATATGCAG 59.357 37.037 0.00 0.00 0.00 4.41
4227 9369 7.475015 GTCAGAGCTTACAAAAATCATATGCA 58.525 34.615 0.00 0.00 0.00 3.96
4228 9370 6.630443 CGTCAGAGCTTACAAAAATCATATGC 59.370 38.462 0.00 0.00 0.00 3.14
4229 9371 7.637519 CACGTCAGAGCTTACAAAAATCATATG 59.362 37.037 0.00 0.00 0.00 1.78
4230 9372 7.677276 GCACGTCAGAGCTTACAAAAATCATAT 60.677 37.037 0.00 0.00 0.00 1.78
4231 9373 6.402118 GCACGTCAGAGCTTACAAAAATCATA 60.402 38.462 0.00 0.00 0.00 2.15
4235 9377 3.815401 AGCACGTCAGAGCTTACAAAAAT 59.185 39.130 0.00 0.00 41.48 1.82
4262 9404 3.605743 TTTACCACGCGGTTAAAACTG 57.394 42.857 12.47 0.00 46.31 3.16
4266 9408 3.814283 ACATCTTTTACCACGCGGTTAAA 59.186 39.130 12.47 3.25 46.31 1.52
4268 9410 2.737783 CACATCTTTTACCACGCGGTTA 59.262 45.455 12.47 0.00 46.31 2.85
4271 9413 1.153353 ACACATCTTTTACCACGCGG 58.847 50.000 12.47 0.00 38.77 6.46
4275 9417 9.180678 CAGTTGATTTTACACATCTTTTACCAC 57.819 33.333 0.00 0.00 0.00 4.16
4287 9429 5.106908 GGAGAGTCAGCAGTTGATTTTACAC 60.107 44.000 0.00 0.00 38.29 2.90
4289 9431 4.997395 TGGAGAGTCAGCAGTTGATTTTAC 59.003 41.667 0.00 0.00 38.29 2.01
4295 9437 2.495270 GAGATGGAGAGTCAGCAGTTGA 59.505 50.000 0.00 0.00 0.00 3.18
4297 9439 1.476085 CGAGATGGAGAGTCAGCAGTT 59.524 52.381 0.00 0.00 0.00 3.16
4300 9442 1.203287 CAACGAGATGGAGAGTCAGCA 59.797 52.381 0.00 0.00 0.00 4.41
4302 9444 4.703645 TTACAACGAGATGGAGAGTCAG 57.296 45.455 0.00 0.00 0.00 3.51
4305 9447 5.187967 AGGATTTTACAACGAGATGGAGAGT 59.812 40.000 0.00 0.00 0.00 3.24
4309 9451 3.938963 GCAGGATTTTACAACGAGATGGA 59.061 43.478 0.00 0.00 0.00 3.41
4312 9454 5.940470 AGAAAGCAGGATTTTACAACGAGAT 59.060 36.000 0.00 0.00 0.00 2.75
4313 9455 5.305585 AGAAAGCAGGATTTTACAACGAGA 58.694 37.500 0.00 0.00 0.00 4.04
4325 9467 1.963985 ACTCCAGGAGAAAGCAGGAT 58.036 50.000 24.45 0.00 33.32 3.24
4326 9468 1.625818 GAACTCCAGGAGAAAGCAGGA 59.374 52.381 24.45 0.00 33.32 3.86
4331 9510 4.314121 CTGTGAAGAACTCCAGGAGAAAG 58.686 47.826 24.45 0.00 33.32 2.62
4340 9519 0.329596 ATGGGCCTGTGAAGAACTCC 59.670 55.000 4.53 0.00 0.00 3.85
4358 9537 2.431782 GCCACATAAGCACATTTGGGAT 59.568 45.455 5.26 0.00 0.00 3.85
4359 9538 1.824230 GCCACATAAGCACATTTGGGA 59.176 47.619 5.26 0.00 0.00 4.37
4360 9539 1.549620 TGCCACATAAGCACATTTGGG 59.450 47.619 5.26 0.00 34.69 4.12
4403 9683 0.457035 GCCCGTACAACGTCCAGATA 59.543 55.000 0.00 0.00 40.58 1.98
4464 9749 1.122019 AAGGGAGCCGACACTTCTGT 61.122 55.000 0.00 0.00 0.00 3.41
4580 9909 7.763985 AGGATTTGAATTTAAAATGGTAAGCCG 59.236 33.333 0.00 0.00 37.67 5.52
4615 9944 2.235402 TGGACGGACTGGGATTCTTTAC 59.765 50.000 0.00 0.00 0.00 2.01
4629 9958 1.618837 CTGGAGACTTCTTTGGACGGA 59.381 52.381 0.00 0.00 0.00 4.69
4630 9959 1.338200 CCTGGAGACTTCTTTGGACGG 60.338 57.143 0.00 0.00 0.00 4.79
4631 9960 1.941668 GCCTGGAGACTTCTTTGGACG 60.942 57.143 0.00 0.00 0.00 4.79
4632 9961 1.349357 AGCCTGGAGACTTCTTTGGAC 59.651 52.381 0.00 0.00 0.00 4.02
4633 9962 1.625818 GAGCCTGGAGACTTCTTTGGA 59.374 52.381 0.00 0.00 0.00 3.53
4650 9979 0.031449 GTCTGTCCATCCGCTAGAGC 59.969 60.000 0.00 0.00 37.78 4.09
4651 9980 1.066303 GTGTCTGTCCATCCGCTAGAG 59.934 57.143 0.00 0.00 0.00 2.43
4652 9981 1.103803 GTGTCTGTCCATCCGCTAGA 58.896 55.000 0.00 0.00 0.00 2.43
4653 9982 0.817654 TGTGTCTGTCCATCCGCTAG 59.182 55.000 0.00 0.00 0.00 3.42
4654 9983 1.136891 CATGTGTCTGTCCATCCGCTA 59.863 52.381 0.00 0.00 0.00 4.26
4656 9985 0.108186 TCATGTGTCTGTCCATCCGC 60.108 55.000 0.00 0.00 0.00 5.54
4657 9986 2.207590 CATCATGTGTCTGTCCATCCG 58.792 52.381 0.00 0.00 0.00 4.18
4670 9999 3.244181 GGCAAAGGGAAAACACATCATGT 60.244 43.478 0.00 0.00 46.42 3.21
4671 10000 3.328505 GGCAAAGGGAAAACACATCATG 58.671 45.455 0.00 0.00 0.00 3.07
4672 10001 2.302733 GGGCAAAGGGAAAACACATCAT 59.697 45.455 0.00 0.00 0.00 2.45
4673 10002 1.691434 GGGCAAAGGGAAAACACATCA 59.309 47.619 0.00 0.00 0.00 3.07
4692 10021 2.420890 GCTCCCATGCTCGAGAGG 59.579 66.667 18.75 14.01 0.00 3.69
4693 10022 1.756408 ATGGCTCCCATGCTCGAGAG 61.756 60.000 18.75 4.52 43.39 3.20
4695 10024 0.465097 AAATGGCTCCCATGCTCGAG 60.465 55.000 8.45 8.45 44.40 4.04
4696 10025 0.464373 GAAATGGCTCCCATGCTCGA 60.464 55.000 0.00 0.00 44.40 4.04
4697 10026 1.779025 CGAAATGGCTCCCATGCTCG 61.779 60.000 11.96 11.96 44.40 5.03
4701 10033 1.462616 TGAACGAAATGGCTCCCATG 58.537 50.000 0.00 0.00 44.40 3.66
4710 10042 8.795786 TTCCTTATGAAAACTTGAACGAAATG 57.204 30.769 0.00 0.00 0.00 2.32
4714 10046 6.292923 TCCTTCCTTATGAAAACTTGAACGA 58.707 36.000 0.00 0.00 31.06 3.85
4716 10048 6.863645 GCTTCCTTCCTTATGAAAACTTGAAC 59.136 38.462 0.00 0.00 31.06 3.18
4722 10054 5.449177 CGGATGCTTCCTTCCTTATGAAAAC 60.449 44.000 16.03 0.00 40.17 2.43
4723 10055 4.640201 CGGATGCTTCCTTCCTTATGAAAA 59.360 41.667 16.03 0.00 40.17 2.29
4727 10059 2.498167 CCGGATGCTTCCTTCCTTATG 58.502 52.381 16.03 0.00 40.17 1.90
4728 10060 1.202818 GCCGGATGCTTCCTTCCTTAT 60.203 52.381 16.03 0.00 40.17 1.73
4729 10061 0.180406 GCCGGATGCTTCCTTCCTTA 59.820 55.000 16.03 0.00 40.17 2.69
4735 10069 3.801997 CCAGGCCGGATGCTTCCT 61.802 66.667 16.03 0.00 40.17 3.36
4915 10261 3.179830 CACCGAAAACACCTATCTCTCG 58.820 50.000 0.00 0.00 0.00 4.04
5111 10457 1.873591 GACAAGCTGGAACGACACATT 59.126 47.619 0.00 0.00 0.00 2.71
5127 10473 1.388547 GGGTTGCACAGTCAAGACAA 58.611 50.000 2.72 0.00 0.00 3.18
5275 10647 4.043310 TCCTCCACAACTGAAGATCCAATT 59.957 41.667 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.