Multiple sequence alignment - TraesCS2B01G576200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G576200 chr2B 100.000 3085 0 0 1 3085 765115283 765112199 0.000000e+00 5698.0
1 TraesCS2B01G576200 chr2B 95.122 123 6 0 2269 2391 765112956 765112834 8.730000e-46 195.0
2 TraesCS2B01G576200 chr2B 95.122 123 6 0 2328 2450 765113015 765112893 8.730000e-46 195.0
3 TraesCS2B01G576200 chr3D 90.202 2674 144 43 452 3085 374010885 374008290 0.000000e+00 3378.0
4 TraesCS2B01G576200 chr3D 89.764 2667 156 52 458 3085 155675847 155678435 0.000000e+00 3304.0
5 TraesCS2B01G576200 chr3D 89.328 2305 133 39 458 2722 609771286 609769055 0.000000e+00 2789.0
6 TraesCS2B01G576200 chr3D 90.956 1747 106 15 458 2178 447609823 447608103 0.000000e+00 2303.0
7 TraesCS2B01G576200 chr3D 94.231 52 3 0 2269 2320 447607903 447607852 2.550000e-11 80.5
8 TraesCS2B01G576200 chr2D 90.023 2666 166 44 457 3085 77209586 77212188 0.000000e+00 3358.0
9 TraesCS2B01G576200 chr2D 89.801 2667 155 48 458 3085 535662318 535664906 0.000000e+00 3310.0
10 TraesCS2B01G576200 chr2D 89.186 2691 152 46 458 3085 207006262 207003648 0.000000e+00 3229.0
11 TraesCS2B01G576200 chr2D 92.822 1825 91 9 457 2249 633747074 633748890 0.000000e+00 2608.0
12 TraesCS2B01G576200 chr1D 90.105 2668 148 44 458 3085 422850795 422848204 0.000000e+00 3358.0
13 TraesCS2B01G576200 chr6A 89.579 2687 195 42 458 3085 532336336 532333676 0.000000e+00 3332.0
14 TraesCS2B01G576200 chr6A 89.211 2688 193 43 458 3085 558828814 558831464 0.000000e+00 3267.0
15 TraesCS2B01G576200 chr5B 89.841 2697 127 48 456 3085 547624684 547622068 0.000000e+00 3326.0
16 TraesCS2B01G576200 chr5B 88.092 823 57 12 2279 3085 659492137 659492934 0.000000e+00 939.0
17 TraesCS2B01G576200 chr5B 82.807 285 36 12 2211 2486 659492004 659492284 3.070000e-60 243.0
18 TraesCS2B01G576200 chr5B 92.126 127 7 1 2253 2379 547622815 547622692 3.160000e-40 176.0
19 TraesCS2B01G576200 chr5B 87.597 129 9 2 2263 2391 659492180 659492301 3.210000e-30 143.0
20 TraesCS2B01G576200 chr5A 89.442 2690 199 42 455 3085 509128604 509131267 0.000000e+00 3315.0
21 TraesCS2B01G576200 chr5D 89.438 2670 158 47 458 3085 504761414 504764001 0.000000e+00 3254.0
22 TraesCS2B01G576200 chr4A 89.117 2683 195 44 457 3085 37984868 37982229 0.000000e+00 3247.0
23 TraesCS2B01G576200 chr3B 95.452 1935 84 4 458 2391 725542960 725544891 0.000000e+00 3083.0
24 TraesCS2B01G576200 chr3B 93.412 759 46 2 2328 3085 725544769 725545524 0.000000e+00 1122.0
25 TraesCS2B01G576200 chr3B 94.000 100 6 0 2387 2486 11909750 11909849 5.330000e-33 152.0
26 TraesCS2B01G576200 chr6D 88.310 2669 150 55 458 3085 387624677 387622130 0.000000e+00 3051.0
27 TraesCS2B01G576200 chr3A 87.826 2686 221 45 458 3085 741177982 741175345 0.000000e+00 3051.0
28 TraesCS2B01G576200 chr7B 91.717 1980 82 32 457 2379 11701557 11699603 0.000000e+00 2673.0
29 TraesCS2B01G576200 chr7B 90.106 1799 65 41 991 2731 66321419 66323162 0.000000e+00 2231.0
30 TraesCS2B01G576200 chr7B 91.439 806 56 6 2289 3085 733270318 733269517 0.000000e+00 1094.0
31 TraesCS2B01G576200 chr7B 93.071 635 43 1 2452 3085 11699612 11698978 0.000000e+00 928.0
32 TraesCS2B01G576200 chr7B 94.245 139 8 0 2348 2486 733270318 733270180 2.410000e-51 213.0
33 TraesCS2B01G576200 chr7B 87.023 131 9 5 2269 2391 733270279 733270149 1.150000e-29 141.0
34 TraesCS2B01G576200 chr1B 90.949 1370 80 10 512 1869 61968001 61969338 0.000000e+00 1803.0
35 TraesCS2B01G576200 chr1B 94.000 100 6 0 2387 2486 176793608 176793509 5.330000e-33 152.0
36 TraesCS2B01G576200 chr4B 94.000 100 6 0 2387 2486 119311506 119311605 5.330000e-33 152.0
37 TraesCS2B01G576200 chrUn 86.170 94 8 4 2300 2391 112554728 112554638 2.530000e-16 97.1
38 TraesCS2B01G576200 chr6B 89.041 73 7 1 2308 2379 564054281 564054209 4.240000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G576200 chr2B 765112199 765115283 3084 True 2029.333333 5698 96.748000 1 3085 3 chr2B.!!$R1 3084
1 TraesCS2B01G576200 chr3D 374008290 374010885 2595 True 3378.000000 3378 90.202000 452 3085 1 chr3D.!!$R1 2633
2 TraesCS2B01G576200 chr3D 155675847 155678435 2588 False 3304.000000 3304 89.764000 458 3085 1 chr3D.!!$F1 2627
3 TraesCS2B01G576200 chr3D 609769055 609771286 2231 True 2789.000000 2789 89.328000 458 2722 1 chr3D.!!$R2 2264
4 TraesCS2B01G576200 chr3D 447607852 447609823 1971 True 1191.750000 2303 92.593500 458 2320 2 chr3D.!!$R3 1862
5 TraesCS2B01G576200 chr2D 77209586 77212188 2602 False 3358.000000 3358 90.023000 457 3085 1 chr2D.!!$F1 2628
6 TraesCS2B01G576200 chr2D 535662318 535664906 2588 False 3310.000000 3310 89.801000 458 3085 1 chr2D.!!$F2 2627
7 TraesCS2B01G576200 chr2D 207003648 207006262 2614 True 3229.000000 3229 89.186000 458 3085 1 chr2D.!!$R1 2627
8 TraesCS2B01G576200 chr2D 633747074 633748890 1816 False 2608.000000 2608 92.822000 457 2249 1 chr2D.!!$F3 1792
9 TraesCS2B01G576200 chr1D 422848204 422850795 2591 True 3358.000000 3358 90.105000 458 3085 1 chr1D.!!$R1 2627
10 TraesCS2B01G576200 chr6A 532333676 532336336 2660 True 3332.000000 3332 89.579000 458 3085 1 chr6A.!!$R1 2627
11 TraesCS2B01G576200 chr6A 558828814 558831464 2650 False 3267.000000 3267 89.211000 458 3085 1 chr6A.!!$F1 2627
12 TraesCS2B01G576200 chr5B 547622068 547624684 2616 True 1751.000000 3326 90.983500 456 3085 2 chr5B.!!$R1 2629
13 TraesCS2B01G576200 chr5B 659492004 659492934 930 False 441.666667 939 86.165333 2211 3085 3 chr5B.!!$F1 874
14 TraesCS2B01G576200 chr5A 509128604 509131267 2663 False 3315.000000 3315 89.442000 455 3085 1 chr5A.!!$F1 2630
15 TraesCS2B01G576200 chr5D 504761414 504764001 2587 False 3254.000000 3254 89.438000 458 3085 1 chr5D.!!$F1 2627
16 TraesCS2B01G576200 chr4A 37982229 37984868 2639 True 3247.000000 3247 89.117000 457 3085 1 chr4A.!!$R1 2628
17 TraesCS2B01G576200 chr3B 725542960 725545524 2564 False 2102.500000 3083 94.432000 458 3085 2 chr3B.!!$F2 2627
18 TraesCS2B01G576200 chr6D 387622130 387624677 2547 True 3051.000000 3051 88.310000 458 3085 1 chr6D.!!$R1 2627
19 TraesCS2B01G576200 chr3A 741175345 741177982 2637 True 3051.000000 3051 87.826000 458 3085 1 chr3A.!!$R1 2627
20 TraesCS2B01G576200 chr7B 66321419 66323162 1743 False 2231.000000 2231 90.106000 991 2731 1 chr7B.!!$F1 1740
21 TraesCS2B01G576200 chr7B 11698978 11701557 2579 True 1800.500000 2673 92.394000 457 3085 2 chr7B.!!$R1 2628
22 TraesCS2B01G576200 chr7B 733269517 733270318 801 True 482.666667 1094 90.902333 2269 3085 3 chr7B.!!$R2 816
23 TraesCS2B01G576200 chr1B 61968001 61969338 1337 False 1803.000000 1803 90.949000 512 1869 1 chr1B.!!$F1 1357

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
452 453 0.036732 ATGTGGACGATTGTGTGGCT 59.963 50.0 0.0 0.0 0.0 4.75 F
725 726 0.104855 GCCATACCACATCTCGCTCA 59.895 55.0 0.0 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1600 1762 0.940126 CGCATATGTCTCCTGCAACC 59.060 55.0 4.29 0.0 35.64 3.77 R
2603 3065 0.610687 CCAAGAAGAAGAGGGCGACT 59.389 55.0 0.00 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.352503 AATTGGCTTTCGTGACATGC 57.647 45.000 0.00 0.00 0.00 4.06
20 21 1.246649 ATTGGCTTTCGTGACATGCA 58.753 45.000 0.00 0.00 0.00 3.96
21 22 0.310543 TTGGCTTTCGTGACATGCAC 59.689 50.000 9.41 9.41 44.21 4.57
22 23 1.210155 GGCTTTCGTGACATGCACC 59.790 57.895 12.62 1.59 44.85 5.01
23 24 1.237285 GGCTTTCGTGACATGCACCT 61.237 55.000 12.62 0.00 44.85 4.00
24 25 1.438651 GCTTTCGTGACATGCACCTA 58.561 50.000 12.62 1.86 44.85 3.08
25 26 2.009774 GCTTTCGTGACATGCACCTAT 58.990 47.619 12.62 0.00 44.85 2.57
26 27 2.420022 GCTTTCGTGACATGCACCTATT 59.580 45.455 12.62 0.00 44.85 1.73
27 28 3.485877 GCTTTCGTGACATGCACCTATTC 60.486 47.826 12.62 0.00 44.85 1.75
28 29 3.326836 TTCGTGACATGCACCTATTCA 57.673 42.857 12.62 0.00 44.85 2.57
29 30 3.326836 TCGTGACATGCACCTATTCAA 57.673 42.857 12.62 0.00 44.85 2.69
30 31 3.872696 TCGTGACATGCACCTATTCAAT 58.127 40.909 12.62 0.00 44.85 2.57
31 32 3.871006 TCGTGACATGCACCTATTCAATC 59.129 43.478 12.62 0.00 44.85 2.67
32 33 3.622612 CGTGACATGCACCTATTCAATCA 59.377 43.478 12.62 0.00 44.85 2.57
33 34 4.094739 CGTGACATGCACCTATTCAATCAA 59.905 41.667 12.62 0.00 44.85 2.57
34 35 5.575957 GTGACATGCACCTATTCAATCAAG 58.424 41.667 8.54 0.00 41.78 3.02
35 36 4.096833 TGACATGCACCTATTCAATCAAGC 59.903 41.667 0.00 0.00 0.00 4.01
36 37 4.275810 ACATGCACCTATTCAATCAAGCT 58.724 39.130 0.00 0.00 0.00 3.74
37 38 4.337555 ACATGCACCTATTCAATCAAGCTC 59.662 41.667 0.00 0.00 0.00 4.09
38 39 4.226427 TGCACCTATTCAATCAAGCTCT 57.774 40.909 0.00 0.00 0.00 4.09
39 40 3.943381 TGCACCTATTCAATCAAGCTCTG 59.057 43.478 0.00 0.00 0.00 3.35
40 41 3.944015 GCACCTATTCAATCAAGCTCTGT 59.056 43.478 0.00 0.00 0.00 3.41
41 42 4.397417 GCACCTATTCAATCAAGCTCTGTT 59.603 41.667 0.00 0.00 0.00 3.16
42 43 5.675575 GCACCTATTCAATCAAGCTCTGTTG 60.676 44.000 0.00 0.00 0.00 3.33
43 44 4.946157 ACCTATTCAATCAAGCTCTGTTGG 59.054 41.667 0.00 0.00 0.00 3.77
44 45 3.863142 ATTCAATCAAGCTCTGTTGGC 57.137 42.857 0.00 0.00 0.00 4.52
45 46 2.275134 TCAATCAAGCTCTGTTGGCA 57.725 45.000 0.00 0.00 0.00 4.92
46 47 2.585330 TCAATCAAGCTCTGTTGGCAA 58.415 42.857 0.00 0.00 0.00 4.52
47 48 2.555325 TCAATCAAGCTCTGTTGGCAAG 59.445 45.455 0.00 0.00 0.00 4.01
48 49 2.555325 CAATCAAGCTCTGTTGGCAAGA 59.445 45.455 0.00 0.00 0.00 3.02
49 50 1.597742 TCAAGCTCTGTTGGCAAGAC 58.402 50.000 0.00 0.00 0.00 3.01
50 51 1.134128 TCAAGCTCTGTTGGCAAGACA 60.134 47.619 0.00 0.00 0.00 3.41
51 52 1.677576 CAAGCTCTGTTGGCAAGACAA 59.322 47.619 0.00 0.00 0.00 3.18
52 53 1.602311 AGCTCTGTTGGCAAGACAAG 58.398 50.000 0.00 0.00 0.00 3.16
53 54 0.595095 GCTCTGTTGGCAAGACAAGG 59.405 55.000 0.00 0.00 0.00 3.61
54 55 1.242076 CTCTGTTGGCAAGACAAGGG 58.758 55.000 0.00 0.00 0.00 3.95
55 56 0.550914 TCTGTTGGCAAGACAAGGGT 59.449 50.000 0.00 0.00 0.00 4.34
56 57 0.670162 CTGTTGGCAAGACAAGGGTG 59.330 55.000 0.00 0.00 0.00 4.61
57 58 0.754957 TGTTGGCAAGACAAGGGTGG 60.755 55.000 0.00 0.00 0.00 4.61
58 59 0.467290 GTTGGCAAGACAAGGGTGGA 60.467 55.000 0.00 0.00 0.00 4.02
59 60 0.178992 TTGGCAAGACAAGGGTGGAG 60.179 55.000 0.00 0.00 0.00 3.86
60 61 1.303643 GGCAAGACAAGGGTGGAGG 60.304 63.158 0.00 0.00 0.00 4.30
61 62 1.973812 GCAAGACAAGGGTGGAGGC 60.974 63.158 0.00 0.00 0.00 4.70
62 63 1.763770 CAAGACAAGGGTGGAGGCT 59.236 57.895 0.00 0.00 0.00 4.58
63 64 0.322008 CAAGACAAGGGTGGAGGCTC 60.322 60.000 5.78 5.78 0.00 4.70
64 65 1.492993 AAGACAAGGGTGGAGGCTCC 61.493 60.000 26.95 26.95 36.96 4.70
65 66 1.920835 GACAAGGGTGGAGGCTCCT 60.921 63.158 32.28 12.07 37.46 3.69
66 67 2.190488 GACAAGGGTGGAGGCTCCTG 62.190 65.000 32.28 23.62 37.46 3.86
67 68 3.334054 AAGGGTGGAGGCTCCTGC 61.334 66.667 32.28 23.77 37.46 4.85
68 69 4.664267 AGGGTGGAGGCTCCTGCA 62.664 66.667 32.28 11.66 42.01 4.41
69 70 3.650950 GGGTGGAGGCTCCTGCAA 61.651 66.667 32.28 11.26 45.54 4.08
70 71 2.436109 GGTGGAGGCTCCTGCAAA 59.564 61.111 32.28 10.86 45.54 3.68
71 72 1.228552 GGTGGAGGCTCCTGCAAAA 60.229 57.895 32.28 10.07 45.54 2.44
72 73 1.527433 GGTGGAGGCTCCTGCAAAAC 61.527 60.000 32.28 20.82 45.54 2.43
73 74 1.228552 TGGAGGCTCCTGCAAAACC 60.229 57.895 32.28 5.60 41.33 3.27
74 75 1.979155 GGAGGCTCCTGCAAAACCC 60.979 63.158 26.44 0.00 41.91 4.11
75 76 1.075659 GAGGCTCCTGCAAAACCCT 59.924 57.895 2.15 0.00 41.91 4.34
76 77 0.328258 GAGGCTCCTGCAAAACCCTA 59.672 55.000 2.15 0.00 41.91 3.53
77 78 0.777446 AGGCTCCTGCAAAACCCTAA 59.223 50.000 0.00 0.00 41.91 2.69
78 79 0.888619 GGCTCCTGCAAAACCCTAAC 59.111 55.000 0.00 0.00 41.91 2.34
79 80 1.616159 GCTCCTGCAAAACCCTAACA 58.384 50.000 0.00 0.00 39.41 2.41
80 81 1.269723 GCTCCTGCAAAACCCTAACAC 59.730 52.381 0.00 0.00 39.41 3.32
81 82 1.886542 CTCCTGCAAAACCCTAACACC 59.113 52.381 0.00 0.00 0.00 4.16
82 83 0.966179 CCTGCAAAACCCTAACACCC 59.034 55.000 0.00 0.00 0.00 4.61
83 84 1.480498 CCTGCAAAACCCTAACACCCT 60.480 52.381 0.00 0.00 0.00 4.34
84 85 1.886542 CTGCAAAACCCTAACACCCTC 59.113 52.381 0.00 0.00 0.00 4.30
85 86 1.497286 TGCAAAACCCTAACACCCTCT 59.503 47.619 0.00 0.00 0.00 3.69
86 87 1.886542 GCAAAACCCTAACACCCTCTG 59.113 52.381 0.00 0.00 0.00 3.35
87 88 2.751816 GCAAAACCCTAACACCCTCTGT 60.752 50.000 0.00 0.00 32.89 3.41
95 96 4.969196 CACCCTCTGTGCACGCGT 62.969 66.667 5.58 5.58 38.34 6.01
96 97 4.664677 ACCCTCTGTGCACGCGTC 62.665 66.667 9.86 5.12 0.00 5.19
98 99 4.363990 CCTCTGTGCACGCGTCCT 62.364 66.667 9.86 0.00 0.00 3.85
99 100 2.807045 CTCTGTGCACGCGTCCTC 60.807 66.667 9.86 0.52 0.00 3.71
100 101 3.558099 CTCTGTGCACGCGTCCTCA 62.558 63.158 9.86 6.81 0.00 3.86
101 102 2.661537 CTGTGCACGCGTCCTCAA 60.662 61.111 9.86 0.00 0.00 3.02
102 103 2.661537 TGTGCACGCGTCCTCAAG 60.662 61.111 9.86 0.00 0.00 3.02
103 104 2.661866 GTGCACGCGTCCTCAAGT 60.662 61.111 9.86 0.00 0.00 3.16
104 105 2.355837 TGCACGCGTCCTCAAGTC 60.356 61.111 9.86 0.00 0.00 3.01
105 106 2.355837 GCACGCGTCCTCAAGTCA 60.356 61.111 9.86 0.00 0.00 3.41
106 107 1.954146 GCACGCGTCCTCAAGTCAA 60.954 57.895 9.86 0.00 0.00 3.18
107 108 1.495584 GCACGCGTCCTCAAGTCAAA 61.496 55.000 9.86 0.00 0.00 2.69
108 109 0.934496 CACGCGTCCTCAAGTCAAAA 59.066 50.000 9.86 0.00 0.00 2.44
109 110 1.531149 CACGCGTCCTCAAGTCAAAAT 59.469 47.619 9.86 0.00 0.00 1.82
110 111 2.734606 CACGCGTCCTCAAGTCAAAATA 59.265 45.455 9.86 0.00 0.00 1.40
111 112 3.370978 CACGCGTCCTCAAGTCAAAATAT 59.629 43.478 9.86 0.00 0.00 1.28
112 113 4.000988 ACGCGTCCTCAAGTCAAAATATT 58.999 39.130 5.58 0.00 0.00 1.28
113 114 5.062934 CACGCGTCCTCAAGTCAAAATATTA 59.937 40.000 9.86 0.00 0.00 0.98
114 115 5.063060 ACGCGTCCTCAAGTCAAAATATTAC 59.937 40.000 5.58 0.00 0.00 1.89
115 116 5.501897 CGCGTCCTCAAGTCAAAATATTACC 60.502 44.000 0.00 0.00 0.00 2.85
116 117 5.220796 GCGTCCTCAAGTCAAAATATTACCC 60.221 44.000 0.00 0.00 0.00 3.69
117 118 5.878116 CGTCCTCAAGTCAAAATATTACCCA 59.122 40.000 0.00 0.00 0.00 4.51
118 119 6.183360 CGTCCTCAAGTCAAAATATTACCCAC 60.183 42.308 0.00 0.00 0.00 4.61
119 120 6.657541 GTCCTCAAGTCAAAATATTACCCACA 59.342 38.462 0.00 0.00 0.00 4.17
120 121 6.657541 TCCTCAAGTCAAAATATTACCCACAC 59.342 38.462 0.00 0.00 0.00 3.82
121 122 6.403200 CCTCAAGTCAAAATATTACCCACACG 60.403 42.308 0.00 0.00 0.00 4.49
122 123 5.998981 TCAAGTCAAAATATTACCCACACGT 59.001 36.000 0.00 0.00 0.00 4.49
123 124 6.148150 TCAAGTCAAAATATTACCCACACGTC 59.852 38.462 0.00 0.00 0.00 4.34
124 125 5.553123 AGTCAAAATATTACCCACACGTCA 58.447 37.500 0.00 0.00 0.00 4.35
125 126 5.642063 AGTCAAAATATTACCCACACGTCAG 59.358 40.000 0.00 0.00 0.00 3.51
126 127 4.393680 TCAAAATATTACCCACACGTCAGC 59.606 41.667 0.00 0.00 0.00 4.26
127 128 3.906720 AATATTACCCACACGTCAGCT 57.093 42.857 0.00 0.00 0.00 4.24
128 129 3.906720 ATATTACCCACACGTCAGCTT 57.093 42.857 0.00 0.00 0.00 3.74
129 130 5.347620 AATATTACCCACACGTCAGCTTA 57.652 39.130 0.00 0.00 0.00 3.09
130 131 2.443887 TTACCCACACGTCAGCTTAC 57.556 50.000 0.00 0.00 0.00 2.34
131 132 1.624336 TACCCACACGTCAGCTTACT 58.376 50.000 0.00 0.00 0.00 2.24
132 133 0.756903 ACCCACACGTCAGCTTACTT 59.243 50.000 0.00 0.00 0.00 2.24
133 134 1.148310 CCCACACGTCAGCTTACTTG 58.852 55.000 3.17 3.17 0.00 3.16
134 135 1.270094 CCCACACGTCAGCTTACTTGA 60.270 52.381 11.14 0.00 0.00 3.02
135 136 1.792949 CCACACGTCAGCTTACTTGAC 59.207 52.381 11.14 2.45 41.14 3.18
136 137 2.469826 CACACGTCAGCTTACTTGACA 58.530 47.619 11.14 0.00 43.98 3.58
137 138 2.218759 CACACGTCAGCTTACTTGACAC 59.781 50.000 11.14 0.00 43.98 3.67
138 139 1.452025 CACGTCAGCTTACTTGACACG 59.548 52.381 0.00 0.00 43.98 4.49
139 140 1.060713 CGTCAGCTTACTTGACACGG 58.939 55.000 6.25 0.00 43.98 4.94
140 141 1.602165 CGTCAGCTTACTTGACACGGT 60.602 52.381 6.25 0.00 43.98 4.83
141 142 2.059541 GTCAGCTTACTTGACACGGTC 58.940 52.381 0.82 0.00 43.41 4.79
142 143 1.961394 TCAGCTTACTTGACACGGTCT 59.039 47.619 5.77 0.00 33.15 3.85
143 144 2.364324 TCAGCTTACTTGACACGGTCTT 59.636 45.455 5.77 0.00 33.15 3.01
144 145 2.731976 CAGCTTACTTGACACGGTCTTC 59.268 50.000 5.77 0.00 33.15 2.87
145 146 2.067013 GCTTACTTGACACGGTCTTCC 58.933 52.381 5.77 0.00 33.15 3.46
146 147 2.685100 CTTACTTGACACGGTCTTCCC 58.315 52.381 5.77 0.00 33.15 3.97
147 148 0.971386 TACTTGACACGGTCTTCCCC 59.029 55.000 5.77 0.00 33.15 4.81
148 149 0.763223 ACTTGACACGGTCTTCCCCT 60.763 55.000 5.77 0.00 33.15 4.79
149 150 0.396811 CTTGACACGGTCTTCCCCTT 59.603 55.000 5.77 0.00 33.15 3.95
150 151 0.107831 TTGACACGGTCTTCCCCTTG 59.892 55.000 5.77 0.00 33.15 3.61
151 152 1.003718 GACACGGTCTTCCCCTTGG 60.004 63.158 0.00 0.00 0.00 3.61
152 153 1.460689 ACACGGTCTTCCCCTTGGA 60.461 57.895 0.00 0.00 39.54 3.53
153 154 1.003718 CACGGTCTTCCCCTTGGAC 60.004 63.158 0.00 0.00 41.57 4.02
154 155 2.264794 CGGTCTTCCCCTTGGACG 59.735 66.667 0.00 0.00 41.57 4.79
155 156 2.046217 GGTCTTCCCCTTGGACGC 60.046 66.667 0.00 0.00 41.57 5.19
156 157 2.747686 GTCTTCCCCTTGGACGCA 59.252 61.111 0.00 0.00 41.57 5.24
157 158 1.299976 GTCTTCCCCTTGGACGCAT 59.700 57.895 0.00 0.00 41.57 4.73
158 159 0.744771 GTCTTCCCCTTGGACGCATC 60.745 60.000 0.00 0.00 41.57 3.91
159 160 1.452108 CTTCCCCTTGGACGCATCC 60.452 63.158 0.00 0.00 46.48 3.51
160 161 2.893682 CTTCCCCTTGGACGCATCCC 62.894 65.000 0.00 0.00 45.59 3.85
161 162 3.727258 CCCCTTGGACGCATCCCA 61.727 66.667 0.00 0.00 45.59 4.37
162 163 2.354729 CCCTTGGACGCATCCCAA 59.645 61.111 0.00 0.00 45.59 4.12
165 166 4.395519 TTGGACGCATCCCAAGTG 57.604 55.556 0.00 0.00 45.59 3.16
166 167 1.454104 TTGGACGCATCCCAAGTGT 59.546 52.632 0.00 0.00 45.59 3.55
167 168 0.888736 TTGGACGCATCCCAAGTGTG 60.889 55.000 0.00 0.00 45.59 3.82
168 169 2.040544 GGACGCATCCCAAGTGTGG 61.041 63.158 0.00 0.00 45.53 4.17
169 170 2.672996 ACGCATCCCAAGTGTGGC 60.673 61.111 0.00 0.00 44.46 5.01
170 171 3.803082 CGCATCCCAAGTGTGGCG 61.803 66.667 0.00 0.00 44.46 5.69
171 172 2.359850 GCATCCCAAGTGTGGCGA 60.360 61.111 0.00 0.00 44.46 5.54
172 173 2.401766 GCATCCCAAGTGTGGCGAG 61.402 63.158 0.00 0.00 44.46 5.03
173 174 1.746615 CATCCCAAGTGTGGCGAGG 60.747 63.158 0.00 0.00 44.46 4.63
174 175 2.971598 ATCCCAAGTGTGGCGAGGG 61.972 63.158 0.00 0.00 44.46 4.30
175 176 3.636231 CCCAAGTGTGGCGAGGGA 61.636 66.667 0.00 0.00 44.46 4.20
176 177 2.671070 CCAAGTGTGGCGAGGGAT 59.329 61.111 0.00 0.00 38.35 3.85
177 178 1.622607 CCCAAGTGTGGCGAGGGATA 61.623 60.000 0.00 0.00 44.46 2.59
178 179 0.179073 CCAAGTGTGGCGAGGGATAG 60.179 60.000 0.00 0.00 38.35 2.08
179 180 0.824109 CAAGTGTGGCGAGGGATAGA 59.176 55.000 0.00 0.00 0.00 1.98
180 181 1.207089 CAAGTGTGGCGAGGGATAGAA 59.793 52.381 0.00 0.00 0.00 2.10
181 182 1.794714 AGTGTGGCGAGGGATAGAAT 58.205 50.000 0.00 0.00 0.00 2.40
182 183 2.119495 AGTGTGGCGAGGGATAGAATT 58.881 47.619 0.00 0.00 0.00 2.17
183 184 2.505819 AGTGTGGCGAGGGATAGAATTT 59.494 45.455 0.00 0.00 0.00 1.82
184 185 2.614057 GTGTGGCGAGGGATAGAATTTG 59.386 50.000 0.00 0.00 0.00 2.32
185 186 2.238646 TGTGGCGAGGGATAGAATTTGT 59.761 45.455 0.00 0.00 0.00 2.83
186 187 3.452990 TGTGGCGAGGGATAGAATTTGTA 59.547 43.478 0.00 0.00 0.00 2.41
187 188 3.808174 GTGGCGAGGGATAGAATTTGTAC 59.192 47.826 0.00 0.00 0.00 2.90
188 189 3.709653 TGGCGAGGGATAGAATTTGTACT 59.290 43.478 0.00 0.00 0.00 2.73
189 190 4.163458 TGGCGAGGGATAGAATTTGTACTT 59.837 41.667 0.00 0.00 0.00 2.24
190 191 4.511826 GGCGAGGGATAGAATTTGTACTTG 59.488 45.833 0.00 0.00 0.00 3.16
191 192 5.357257 GCGAGGGATAGAATTTGTACTTGA 58.643 41.667 0.00 0.00 0.00 3.02
192 193 5.463724 GCGAGGGATAGAATTTGTACTTGAG 59.536 44.000 0.00 0.00 0.00 3.02
193 194 5.463724 CGAGGGATAGAATTTGTACTTGAGC 59.536 44.000 0.00 0.00 0.00 4.26
194 195 6.567602 AGGGATAGAATTTGTACTTGAGCT 57.432 37.500 0.00 0.00 0.00 4.09
195 196 6.963322 AGGGATAGAATTTGTACTTGAGCTT 58.037 36.000 0.00 0.00 0.00 3.74
196 197 7.051000 AGGGATAGAATTTGTACTTGAGCTTC 58.949 38.462 0.00 0.00 0.00 3.86
197 198 7.051000 GGGATAGAATTTGTACTTGAGCTTCT 58.949 38.462 0.00 0.00 0.00 2.85
198 199 8.204836 GGGATAGAATTTGTACTTGAGCTTCTA 58.795 37.037 0.00 0.00 0.00 2.10
199 200 9.601217 GGATAGAATTTGTACTTGAGCTTCTAA 57.399 33.333 0.00 0.00 30.22 2.10
202 203 8.329203 AGAATTTGTACTTGAGCTTCTAAAGG 57.671 34.615 0.00 0.00 0.00 3.11
203 204 8.157476 AGAATTTGTACTTGAGCTTCTAAAGGA 58.843 33.333 0.00 0.00 0.00 3.36
204 205 8.691661 AATTTGTACTTGAGCTTCTAAAGGAA 57.308 30.769 0.00 0.00 0.00 3.36
216 217 6.749923 CTTCTAAAGGAAGGTCTGATTTGG 57.250 41.667 0.00 0.00 45.55 3.28
217 218 6.448369 TTCTAAAGGAAGGTCTGATTTGGA 57.552 37.500 0.00 0.00 0.00 3.53
218 219 6.054860 TCTAAAGGAAGGTCTGATTTGGAG 57.945 41.667 0.00 0.00 0.00 3.86
219 220 5.785423 TCTAAAGGAAGGTCTGATTTGGAGA 59.215 40.000 0.00 0.00 0.00 3.71
220 221 4.566426 AAGGAAGGTCTGATTTGGAGAG 57.434 45.455 0.00 0.00 0.00 3.20
221 222 3.525862 AGGAAGGTCTGATTTGGAGAGT 58.474 45.455 0.00 0.00 0.00 3.24
222 223 3.913163 AGGAAGGTCTGATTTGGAGAGTT 59.087 43.478 0.00 0.00 0.00 3.01
223 224 4.006319 GGAAGGTCTGATTTGGAGAGTTG 58.994 47.826 0.00 0.00 0.00 3.16
224 225 3.710209 AGGTCTGATTTGGAGAGTTGG 57.290 47.619 0.00 0.00 0.00 3.77
225 226 3.251484 AGGTCTGATTTGGAGAGTTGGA 58.749 45.455 0.00 0.00 0.00 3.53
226 227 3.652869 AGGTCTGATTTGGAGAGTTGGAA 59.347 43.478 0.00 0.00 0.00 3.53
227 228 4.104738 AGGTCTGATTTGGAGAGTTGGAAA 59.895 41.667 0.00 0.00 0.00 3.13
228 229 5.012893 GGTCTGATTTGGAGAGTTGGAAAT 58.987 41.667 0.00 0.00 0.00 2.17
229 230 5.105997 GGTCTGATTTGGAGAGTTGGAAATG 60.106 44.000 0.00 0.00 0.00 2.32
230 231 5.012239 TCTGATTTGGAGAGTTGGAAATGG 58.988 41.667 0.00 0.00 0.00 3.16
231 232 4.996793 TGATTTGGAGAGTTGGAAATGGA 58.003 39.130 0.00 0.00 0.00 3.41
232 233 5.392995 TGATTTGGAGAGTTGGAAATGGAA 58.607 37.500 0.00 0.00 0.00 3.53
233 234 5.837979 TGATTTGGAGAGTTGGAAATGGAAA 59.162 36.000 0.00 0.00 0.00 3.13
234 235 6.326064 TGATTTGGAGAGTTGGAAATGGAAAA 59.674 34.615 0.00 0.00 0.00 2.29
235 236 6.552445 TTTGGAGAGTTGGAAATGGAAAAA 57.448 33.333 0.00 0.00 0.00 1.94
236 237 5.789643 TGGAGAGTTGGAAATGGAAAAAG 57.210 39.130 0.00 0.00 0.00 2.27
237 238 5.208121 TGGAGAGTTGGAAATGGAAAAAGT 58.792 37.500 0.00 0.00 0.00 2.66
238 239 6.369629 TGGAGAGTTGGAAATGGAAAAAGTA 58.630 36.000 0.00 0.00 0.00 2.24
239 240 7.010160 TGGAGAGTTGGAAATGGAAAAAGTAT 58.990 34.615 0.00 0.00 0.00 2.12
240 241 7.176690 TGGAGAGTTGGAAATGGAAAAAGTATC 59.823 37.037 0.00 0.00 0.00 2.24
241 242 7.363007 GGAGAGTTGGAAATGGAAAAAGTATCC 60.363 40.741 0.00 0.00 37.48 2.59
265 266 9.347240 TCCAGATTAAAAGAGATCATTGAATCC 57.653 33.333 10.26 0.00 0.00 3.01
266 267 8.574737 CCAGATTAAAAGAGATCATTGAATCCC 58.425 37.037 10.26 0.00 0.00 3.85
267 268 9.352191 CAGATTAAAAGAGATCATTGAATCCCT 57.648 33.333 10.26 0.00 0.00 4.20
272 273 7.927683 AAAGAGATCATTGAATCCCTAGAGA 57.072 36.000 0.00 0.00 0.00 3.10
273 274 7.543359 AAGAGATCATTGAATCCCTAGAGAG 57.457 40.000 0.00 0.00 0.00 3.20
274 275 6.862225 AGAGATCATTGAATCCCTAGAGAGA 58.138 40.000 0.00 0.00 0.00 3.10
275 276 6.950041 AGAGATCATTGAATCCCTAGAGAGAG 59.050 42.308 0.00 0.00 0.00 3.20
276 277 6.018469 AGATCATTGAATCCCTAGAGAGAGG 58.982 44.000 0.00 0.00 36.23 3.69
291 292 2.530151 AGGGACTCAAGGCAGCCA 60.530 61.111 15.80 0.00 0.00 4.75
292 293 2.156098 AGGGACTCAAGGCAGCCAA 61.156 57.895 15.80 0.00 0.00 4.52
293 294 1.000396 GGGACTCAAGGCAGCCAAT 60.000 57.895 15.80 0.00 0.00 3.16
294 295 0.613012 GGGACTCAAGGCAGCCAATT 60.613 55.000 15.80 0.00 0.00 2.32
295 296 1.260544 GGACTCAAGGCAGCCAATTT 58.739 50.000 15.80 0.00 0.00 1.82
296 297 1.620323 GGACTCAAGGCAGCCAATTTT 59.380 47.619 15.80 0.00 0.00 1.82
297 298 2.825532 GGACTCAAGGCAGCCAATTTTA 59.174 45.455 15.80 0.00 0.00 1.52
298 299 3.448660 GGACTCAAGGCAGCCAATTTTAT 59.551 43.478 15.80 0.00 0.00 1.40
299 300 4.081476 GGACTCAAGGCAGCCAATTTTATT 60.081 41.667 15.80 0.00 0.00 1.40
300 301 5.077134 ACTCAAGGCAGCCAATTTTATTC 57.923 39.130 15.80 0.00 0.00 1.75
301 302 4.107622 CTCAAGGCAGCCAATTTTATTCG 58.892 43.478 15.80 0.00 0.00 3.34
302 303 3.119173 TCAAGGCAGCCAATTTTATTCGG 60.119 43.478 15.80 0.00 0.00 4.30
303 304 2.733956 AGGCAGCCAATTTTATTCGGA 58.266 42.857 15.80 0.00 0.00 4.55
304 305 2.689983 AGGCAGCCAATTTTATTCGGAG 59.310 45.455 15.80 0.00 0.00 4.63
305 306 2.223805 GGCAGCCAATTTTATTCGGAGG 60.224 50.000 6.55 0.00 0.00 4.30
306 307 2.427095 GCAGCCAATTTTATTCGGAGGT 59.573 45.455 0.00 0.00 0.00 3.85
307 308 3.489229 GCAGCCAATTTTATTCGGAGGTC 60.489 47.826 0.00 0.00 0.00 3.85
308 309 3.947834 CAGCCAATTTTATTCGGAGGTCT 59.052 43.478 0.00 0.00 0.00 3.85
309 310 5.123227 CAGCCAATTTTATTCGGAGGTCTA 58.877 41.667 0.00 0.00 0.00 2.59
310 311 5.237344 CAGCCAATTTTATTCGGAGGTCTAG 59.763 44.000 0.00 0.00 0.00 2.43
311 312 5.130477 AGCCAATTTTATTCGGAGGTCTAGA 59.870 40.000 0.00 0.00 0.00 2.43
312 313 5.998363 GCCAATTTTATTCGGAGGTCTAGAT 59.002 40.000 0.00 0.00 0.00 1.98
313 314 6.486993 GCCAATTTTATTCGGAGGTCTAGATT 59.513 38.462 0.00 0.00 0.00 2.40
314 315 7.520614 GCCAATTTTATTCGGAGGTCTAGATTG 60.521 40.741 0.00 0.00 0.00 2.67
315 316 7.715249 CCAATTTTATTCGGAGGTCTAGATTGA 59.285 37.037 0.00 0.00 0.00 2.57
316 317 8.768955 CAATTTTATTCGGAGGTCTAGATTGAG 58.231 37.037 0.00 0.00 0.00 3.02
317 318 7.655521 TTTTATTCGGAGGTCTAGATTGAGA 57.344 36.000 0.00 0.00 0.00 3.27
318 319 7.841282 TTTATTCGGAGGTCTAGATTGAGAT 57.159 36.000 0.00 0.00 0.00 2.75
319 320 5.720371 ATTCGGAGGTCTAGATTGAGATG 57.280 43.478 0.00 0.00 0.00 2.90
320 321 3.491342 TCGGAGGTCTAGATTGAGATGG 58.509 50.000 0.00 0.00 0.00 3.51
321 322 2.560542 CGGAGGTCTAGATTGAGATGGG 59.439 54.545 0.00 0.00 0.00 4.00
322 323 3.582164 GGAGGTCTAGATTGAGATGGGT 58.418 50.000 0.00 0.00 0.00 4.51
323 324 3.576550 GGAGGTCTAGATTGAGATGGGTC 59.423 52.174 0.00 0.00 0.00 4.46
324 325 4.219115 GAGGTCTAGATTGAGATGGGTCA 58.781 47.826 0.00 0.00 0.00 4.02
325 326 4.624913 AGGTCTAGATTGAGATGGGTCAA 58.375 43.478 0.00 0.00 40.68 3.18
326 327 4.407296 AGGTCTAGATTGAGATGGGTCAAC 59.593 45.833 0.00 0.00 39.25 3.18
327 328 4.407296 GGTCTAGATTGAGATGGGTCAACT 59.593 45.833 0.00 0.00 39.25 3.16
328 329 5.598830 GGTCTAGATTGAGATGGGTCAACTA 59.401 44.000 0.00 0.00 39.25 2.24
329 330 6.098409 GGTCTAGATTGAGATGGGTCAACTAA 59.902 42.308 0.00 0.00 39.25 2.24
330 331 7.202047 GGTCTAGATTGAGATGGGTCAACTAAT 60.202 40.741 0.00 0.00 39.25 1.73
331 332 8.207545 GTCTAGATTGAGATGGGTCAACTAATT 58.792 37.037 0.00 0.00 39.25 1.40
332 333 8.206867 TCTAGATTGAGATGGGTCAACTAATTG 58.793 37.037 0.00 0.00 39.25 2.32
333 334 6.962182 AGATTGAGATGGGTCAACTAATTGA 58.038 36.000 0.00 0.00 42.73 2.57
334 335 7.580910 AGATTGAGATGGGTCAACTAATTGAT 58.419 34.615 0.00 0.00 46.43 2.57
335 336 7.501559 AGATTGAGATGGGTCAACTAATTGATG 59.498 37.037 0.00 0.00 46.43 3.07
336 337 6.312141 TGAGATGGGTCAACTAATTGATGA 57.688 37.500 0.00 0.00 46.43 2.92
337 338 6.903516 TGAGATGGGTCAACTAATTGATGAT 58.096 36.000 0.00 0.00 46.43 2.45
338 339 7.348815 TGAGATGGGTCAACTAATTGATGATT 58.651 34.615 0.00 0.00 46.43 2.57
339 340 7.283807 TGAGATGGGTCAACTAATTGATGATTG 59.716 37.037 0.00 0.00 46.43 2.67
340 341 7.348815 AGATGGGTCAACTAATTGATGATTGA 58.651 34.615 0.00 0.00 46.43 2.57
341 342 7.835682 AGATGGGTCAACTAATTGATGATTGAA 59.164 33.333 0.00 0.00 46.43 2.69
342 343 7.395190 TGGGTCAACTAATTGATGATTGAAG 57.605 36.000 0.00 0.00 46.43 3.02
343 344 6.377996 TGGGTCAACTAATTGATGATTGAAGG 59.622 38.462 0.00 0.00 46.43 3.46
344 345 6.603201 GGGTCAACTAATTGATGATTGAAGGA 59.397 38.462 0.00 0.00 46.43 3.36
345 346 7.122650 GGGTCAACTAATTGATGATTGAAGGAA 59.877 37.037 0.00 0.00 46.43 3.36
346 347 7.970614 GGTCAACTAATTGATGATTGAAGGAAC 59.029 37.037 0.00 0.00 46.43 3.62
347 348 8.514594 GTCAACTAATTGATGATTGAAGGAACA 58.485 33.333 0.00 0.00 46.43 3.18
348 349 9.076781 TCAACTAATTGATGATTGAAGGAACAA 57.923 29.630 0.00 0.00 40.01 2.83
349 350 9.695526 CAACTAATTGATGATTGAAGGAACAAA 57.304 29.630 0.00 0.00 38.15 2.83
351 352 9.865321 ACTAATTGATGATTGAAGGAACAAATG 57.135 29.630 0.00 0.00 33.44 2.32
354 355 9.953565 AATTGATGATTGAAGGAACAAATGAAT 57.046 25.926 0.00 0.00 33.44 2.57
355 356 8.766000 TTGATGATTGAAGGAACAAATGAATG 57.234 30.769 0.00 0.00 33.44 2.67
356 357 7.324935 TGATGATTGAAGGAACAAATGAATGG 58.675 34.615 0.00 0.00 33.44 3.16
357 358 6.914654 TGATTGAAGGAACAAATGAATGGA 57.085 33.333 0.00 0.00 33.44 3.41
358 359 7.300556 TGATTGAAGGAACAAATGAATGGAA 57.699 32.000 0.00 0.00 33.44 3.53
359 360 7.909518 TGATTGAAGGAACAAATGAATGGAAT 58.090 30.769 0.00 0.00 33.44 3.01
360 361 8.036575 TGATTGAAGGAACAAATGAATGGAATC 58.963 33.333 0.00 0.00 33.44 2.52
361 362 6.914654 TGAAGGAACAAATGAATGGAATCA 57.085 33.333 0.00 0.00 0.00 2.57
362 363 6.927416 TGAAGGAACAAATGAATGGAATCAG 58.073 36.000 0.00 0.00 31.76 2.90
363 364 5.927281 AGGAACAAATGAATGGAATCAGG 57.073 39.130 0.00 0.00 31.76 3.86
364 365 5.582953 AGGAACAAATGAATGGAATCAGGA 58.417 37.500 0.00 0.00 31.76 3.86
365 366 6.018469 AGGAACAAATGAATGGAATCAGGAA 58.982 36.000 0.00 0.00 31.76 3.36
366 367 6.071165 AGGAACAAATGAATGGAATCAGGAAC 60.071 38.462 0.00 0.00 31.76 3.62
367 368 6.071165 GGAACAAATGAATGGAATCAGGAACT 60.071 38.462 0.00 0.00 43.88 3.01
368 369 7.122650 GGAACAAATGAATGGAATCAGGAACTA 59.877 37.037 0.00 0.00 36.02 2.24
369 370 8.421249 AACAAATGAATGGAATCAGGAACTAA 57.579 30.769 0.00 0.00 36.02 2.24
370 371 8.599624 ACAAATGAATGGAATCAGGAACTAAT 57.400 30.769 0.00 0.00 36.02 1.73
371 372 8.689972 ACAAATGAATGGAATCAGGAACTAATC 58.310 33.333 0.00 0.00 36.02 1.75
372 373 8.910944 CAAATGAATGGAATCAGGAACTAATCT 58.089 33.333 0.00 0.00 36.02 2.40
373 374 8.688747 AATGAATGGAATCAGGAACTAATCTC 57.311 34.615 0.00 0.00 36.02 2.75
374 375 6.595682 TGAATGGAATCAGGAACTAATCTCC 58.404 40.000 0.00 0.00 36.02 3.71
375 376 5.574970 ATGGAATCAGGAACTAATCTCCC 57.425 43.478 0.00 0.00 36.02 4.30
376 377 4.370776 TGGAATCAGGAACTAATCTCCCA 58.629 43.478 0.00 0.00 36.02 4.37
377 378 4.788075 TGGAATCAGGAACTAATCTCCCAA 59.212 41.667 0.00 0.00 36.02 4.12
378 379 5.252863 TGGAATCAGGAACTAATCTCCCAAA 59.747 40.000 0.00 0.00 36.02 3.28
379 380 6.068853 TGGAATCAGGAACTAATCTCCCAAAT 60.069 38.462 0.00 0.00 36.02 2.32
380 381 6.488344 GGAATCAGGAACTAATCTCCCAAATC 59.512 42.308 0.00 0.00 36.02 2.17
381 382 6.838401 ATCAGGAACTAATCTCCCAAATCT 57.162 37.500 0.00 0.00 36.02 2.40
382 383 6.642733 TCAGGAACTAATCTCCCAAATCTT 57.357 37.500 0.00 0.00 36.02 2.40
383 384 7.032598 TCAGGAACTAATCTCCCAAATCTTT 57.967 36.000 0.00 0.00 36.02 2.52
384 385 7.112779 TCAGGAACTAATCTCCCAAATCTTTC 58.887 38.462 0.00 0.00 36.02 2.62
385 386 6.886459 CAGGAACTAATCTCCCAAATCTTTCA 59.114 38.462 0.00 0.00 36.02 2.69
386 387 6.887002 AGGAACTAATCTCCCAAATCTTTCAC 59.113 38.462 0.00 0.00 36.02 3.18
387 388 6.095580 GGAACTAATCTCCCAAATCTTTCACC 59.904 42.308 0.00 0.00 0.00 4.02
388 389 5.510430 ACTAATCTCCCAAATCTTTCACCC 58.490 41.667 0.00 0.00 0.00 4.61
389 390 2.899303 TCTCCCAAATCTTTCACCCC 57.101 50.000 0.00 0.00 0.00 4.95
390 391 2.358258 TCTCCCAAATCTTTCACCCCT 58.642 47.619 0.00 0.00 0.00 4.79
391 392 2.721906 TCTCCCAAATCTTTCACCCCTT 59.278 45.455 0.00 0.00 0.00 3.95
392 393 3.092301 CTCCCAAATCTTTCACCCCTTC 58.908 50.000 0.00 0.00 0.00 3.46
393 394 1.818674 CCCAAATCTTTCACCCCTTCG 59.181 52.381 0.00 0.00 0.00 3.79
394 395 2.554344 CCCAAATCTTTCACCCCTTCGA 60.554 50.000 0.00 0.00 0.00 3.71
395 396 3.356290 CCAAATCTTTCACCCCTTCGAT 58.644 45.455 0.00 0.00 0.00 3.59
396 397 3.129287 CCAAATCTTTCACCCCTTCGATG 59.871 47.826 0.00 0.00 0.00 3.84
397 398 2.044123 ATCTTTCACCCCTTCGATGC 57.956 50.000 0.00 0.00 0.00 3.91
398 399 0.690192 TCTTTCACCCCTTCGATGCA 59.310 50.000 0.00 0.00 0.00 3.96
399 400 1.089920 CTTTCACCCCTTCGATGCAG 58.910 55.000 0.00 0.00 0.00 4.41
400 401 0.400213 TTTCACCCCTTCGATGCAGT 59.600 50.000 0.00 0.00 0.00 4.40
401 402 0.321564 TTCACCCCTTCGATGCAGTG 60.322 55.000 10.74 10.74 0.00 3.66
402 403 1.746615 CACCCCTTCGATGCAGTGG 60.747 63.158 0.00 0.00 0.00 4.00
403 404 1.918293 ACCCCTTCGATGCAGTGGA 60.918 57.895 0.00 0.00 0.00 4.02
404 405 1.299648 CCCCTTCGATGCAGTGGAA 59.700 57.895 0.00 0.00 0.00 3.53
405 406 0.322456 CCCCTTCGATGCAGTGGAAA 60.322 55.000 0.00 0.00 0.00 3.13
406 407 1.683011 CCCCTTCGATGCAGTGGAAAT 60.683 52.381 0.00 0.00 0.00 2.17
407 408 2.094675 CCCTTCGATGCAGTGGAAATT 58.905 47.619 0.00 0.00 0.00 1.82
408 409 2.493278 CCCTTCGATGCAGTGGAAATTT 59.507 45.455 0.00 0.00 0.00 1.82
409 410 3.504863 CCTTCGATGCAGTGGAAATTTG 58.495 45.455 0.00 0.00 0.00 2.32
410 411 2.634982 TCGATGCAGTGGAAATTTGC 57.365 45.000 2.22 2.22 38.30 3.68
418 419 6.932356 TGCAGTGGAAATTTGCAAAATTAA 57.068 29.167 17.19 3.44 44.13 1.40
419 420 7.325660 TGCAGTGGAAATTTGCAAAATTAAA 57.674 28.000 17.19 3.07 44.13 1.52
420 421 7.765307 TGCAGTGGAAATTTGCAAAATTAAAA 58.235 26.923 17.19 0.53 44.13 1.52
421 422 8.246180 TGCAGTGGAAATTTGCAAAATTAAAAA 58.754 25.926 17.19 0.00 44.13 1.94
422 423 8.530720 GCAGTGGAAATTTGCAAAATTAAAAAC 58.469 29.630 17.19 10.08 37.75 2.43
423 424 9.018716 CAGTGGAAATTTGCAAAATTAAAAACC 57.981 29.630 17.19 11.25 0.00 3.27
424 425 8.194104 AGTGGAAATTTGCAAAATTAAAAACCC 58.806 29.630 17.19 10.57 0.00 4.11
425 426 7.436673 GTGGAAATTTGCAAAATTAAAAACCCC 59.563 33.333 17.19 9.89 0.00 4.95
426 427 7.343057 TGGAAATTTGCAAAATTAAAAACCCCT 59.657 29.630 17.19 0.00 0.00 4.79
427 428 7.865385 GGAAATTTGCAAAATTAAAAACCCCTC 59.135 33.333 17.19 0.00 0.00 4.30
428 429 8.532186 AAATTTGCAAAATTAAAAACCCCTCT 57.468 26.923 17.19 0.00 0.00 3.69
429 430 6.934048 TTTGCAAAATTAAAAACCCCTCTG 57.066 33.333 10.02 0.00 0.00 3.35
430 431 4.384940 TGCAAAATTAAAAACCCCTCTGC 58.615 39.130 0.00 0.00 0.00 4.26
431 432 3.431912 GCAAAATTAAAAACCCCTCTGCG 59.568 43.478 0.00 0.00 0.00 5.18
432 433 3.953712 AAATTAAAAACCCCTCTGCGG 57.046 42.857 0.00 0.00 0.00 5.69
433 434 2.891191 ATTAAAAACCCCTCTGCGGA 57.109 45.000 0.00 0.00 33.16 5.54
434 435 2.891191 TTAAAAACCCCTCTGCGGAT 57.109 45.000 0.00 0.00 33.16 4.18
435 436 2.122783 TAAAAACCCCTCTGCGGATG 57.877 50.000 0.00 0.00 33.16 3.51
436 437 0.112412 AAAAACCCCTCTGCGGATGT 59.888 50.000 0.00 0.00 33.16 3.06
437 438 0.609131 AAAACCCCTCTGCGGATGTG 60.609 55.000 0.00 0.00 33.16 3.21
438 439 2.484287 AAACCCCTCTGCGGATGTGG 62.484 60.000 0.00 0.00 33.16 4.17
439 440 3.083349 CCCCTCTGCGGATGTGGA 61.083 66.667 0.00 0.00 33.16 4.02
440 441 2.187946 CCCTCTGCGGATGTGGAC 59.812 66.667 0.00 0.00 33.16 4.02
441 442 2.202797 CCTCTGCGGATGTGGACG 60.203 66.667 0.00 0.00 33.16 4.79
442 443 2.710902 CCTCTGCGGATGTGGACGA 61.711 63.158 0.00 0.00 33.16 4.20
443 444 1.439228 CTCTGCGGATGTGGACGAT 59.561 57.895 0.00 0.00 0.00 3.73
444 445 0.179100 CTCTGCGGATGTGGACGATT 60.179 55.000 0.00 0.00 0.00 3.34
445 446 0.460109 TCTGCGGATGTGGACGATTG 60.460 55.000 0.00 0.00 0.00 2.67
446 447 0.740868 CTGCGGATGTGGACGATTGT 60.741 55.000 0.00 0.00 0.00 2.71
447 448 1.018752 TGCGGATGTGGACGATTGTG 61.019 55.000 0.00 0.00 0.00 3.33
448 449 1.019278 GCGGATGTGGACGATTGTGT 61.019 55.000 0.00 0.00 0.00 3.72
449 450 0.721154 CGGATGTGGACGATTGTGTG 59.279 55.000 0.00 0.00 0.00 3.82
450 451 1.086696 GGATGTGGACGATTGTGTGG 58.913 55.000 0.00 0.00 0.00 4.17
451 452 0.447801 GATGTGGACGATTGTGTGGC 59.552 55.000 0.00 0.00 0.00 5.01
452 453 0.036732 ATGTGGACGATTGTGTGGCT 59.963 50.000 0.00 0.00 0.00 4.75
453 454 0.179032 TGTGGACGATTGTGTGGCTT 60.179 50.000 0.00 0.00 0.00 4.35
454 455 0.238289 GTGGACGATTGTGTGGCTTG 59.762 55.000 0.00 0.00 0.00 4.01
538 539 5.931146 CACTAATTATTTGCAAAAGCCACCA 59.069 36.000 17.19 0.00 0.00 4.17
552 553 2.026262 AGCCACCACGGATTCAGTAAAT 60.026 45.455 0.00 0.00 36.56 1.40
597 598 3.860930 ATTTGGCGCGGTTGAGGGT 62.861 57.895 8.83 0.00 0.00 4.34
704 705 3.695606 GCAGAGACAGACCGCCCA 61.696 66.667 0.00 0.00 0.00 5.36
709 710 4.408821 GACAGACCGCCCATGCCA 62.409 66.667 0.00 0.00 0.00 4.92
710 711 3.704231 GACAGACCGCCCATGCCAT 62.704 63.158 0.00 0.00 0.00 4.40
725 726 0.104855 GCCATACCACATCTCGCTCA 59.895 55.000 0.00 0.00 0.00 4.26
858 891 2.203907 AGCACTGAGGGCTCCACT 60.204 61.111 1.79 0.00 36.81 4.00
862 895 3.699894 CTGAGGGCTCCACTGCGT 61.700 66.667 0.00 0.00 0.00 5.24
999 1033 6.560003 TTTCTCAGATCCCAGCTACAATTA 57.440 37.500 0.00 0.00 0.00 1.40
1016 1050 4.142902 ACAATTAATGAGCCGTTGTTCGAG 60.143 41.667 0.00 0.00 42.86 4.04
1089 1123 4.122046 GGAAATATGTTGCATTTGAGGGC 58.878 43.478 0.00 0.00 0.00 5.19
1218 1335 8.988060 TGTTCATGTTCTAGGGTTCATAGATAA 58.012 33.333 0.00 0.00 0.00 1.75
1597 1759 4.581824 ACACAATCTCACACAGCAGAAAAT 59.418 37.500 0.00 0.00 0.00 1.82
1600 1762 5.413833 ACAATCTCACACAGCAGAAAATAGG 59.586 40.000 0.00 0.00 0.00 2.57
1618 1780 1.133976 AGGGTTGCAGGAGACATATGC 60.134 52.381 1.58 0.00 40.40 3.14
1793 1957 6.015519 ACCAGTTAAAGCAAATTCATGTAGCA 60.016 34.615 0.00 0.00 0.00 3.49
1858 2022 3.749226 AGAAGGAAAAGTTGAGCTCTGG 58.251 45.455 16.19 0.00 0.00 3.86
2126 2311 5.860182 CCATGTGTGTCAATGATGTCTTTTC 59.140 40.000 0.00 0.00 0.00 2.29
2249 2495 5.241506 TCAGCTTGGATTAAGTTCAGTTTGG 59.758 40.000 0.00 0.00 38.70 3.28
2254 2511 5.070001 TGGATTAAGTTCAGTTTGGACCTG 58.930 41.667 0.00 0.00 0.00 4.00
2256 2513 1.692411 AAGTTCAGTTTGGACCTGGC 58.308 50.000 0.00 0.00 0.00 4.85
2293 2644 6.274157 ACTGCTGGCATACATAGATAGTAC 57.726 41.667 0.00 0.00 0.00 2.73
2306 2664 8.458573 ACATAGATAGTACCTGCATAGATAGC 57.541 38.462 0.00 0.00 0.00 2.97
2314 2673 3.649981 ACCTGCATAGATAGCCTGACATT 59.350 43.478 0.00 0.00 0.00 2.71
2315 2674 4.103785 ACCTGCATAGATAGCCTGACATTT 59.896 41.667 0.00 0.00 0.00 2.32
2320 2679 7.044181 TGCATAGATAGCCTGACATTTATAGC 58.956 38.462 0.00 0.00 0.00 2.97
2322 2681 7.550551 GCATAGATAGCCTGACATTTATAGCAA 59.449 37.037 0.00 0.00 0.00 3.91
2323 2682 9.440773 CATAGATAGCCTGACATTTATAGCAAA 57.559 33.333 0.00 0.00 0.00 3.68
2324 2683 7.736447 AGATAGCCTGACATTTATAGCAAAC 57.264 36.000 0.00 0.00 0.00 2.93
2326 2685 7.659390 AGATAGCCTGACATTTATAGCAAACTC 59.341 37.037 0.00 0.00 0.00 3.01
2327 2686 5.500234 AGCCTGACATTTATAGCAAACTCA 58.500 37.500 0.00 0.00 0.00 3.41
2330 2689 7.227512 AGCCTGACATTTATAGCAAACTCATAC 59.772 37.037 0.00 0.00 0.00 2.39
2331 2690 7.227512 GCCTGACATTTATAGCAAACTCATACT 59.772 37.037 0.00 0.00 0.00 2.12
2332 2691 8.554528 CCTGACATTTATAGCAAACTCATACTG 58.445 37.037 0.00 0.00 0.00 2.74
2333 2692 9.102757 CTGACATTTATAGCAAACTCATACTGT 57.897 33.333 0.00 0.00 0.00 3.55
2392 2774 8.011844 TGACATAGATAGCAAGTTCATACTGT 57.988 34.615 0.00 0.00 34.01 3.55
2496 2957 8.798402 AGATAGAACTGGCATACTAACATACTC 58.202 37.037 0.00 0.00 0.00 2.59
2603 3065 1.267782 CGCACGTCATTGTTGTTCACA 60.268 47.619 0.00 0.00 0.00 3.58
2650 3112 0.326264 GGCTCCACCACATCTTCACT 59.674 55.000 0.00 0.00 38.86 3.41
2732 3206 3.385755 GCTTATCCACATCAATTGGGCTT 59.614 43.478 5.42 0.00 34.56 4.35
2867 3356 1.107114 AGCCGTCAGATTCGTCAGAT 58.893 50.000 0.00 0.00 0.00 2.90
2936 3426 1.380246 GAGCACCCATGGATTGGCA 60.380 57.895 15.22 0.00 44.97 4.92
2973 3463 2.040464 GATGGGGGCTGGGAGAGA 60.040 66.667 0.00 0.00 0.00 3.10
2976 3466 2.766229 GGGGGCTGGGAGAGAGAC 60.766 72.222 0.00 0.00 0.00 3.36
3001 3491 0.458370 CGTCGGTGATGTCATCTGCA 60.458 55.000 13.90 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.612950 TGCATGTCACGAAAGCCAATT 59.387 42.857 0.00 0.00 0.00 2.32
1 2 1.068333 GTGCATGTCACGAAAGCCAAT 60.068 47.619 0.00 0.00 35.76 3.16
3 4 1.514678 GGTGCATGTCACGAAAGCCA 61.515 55.000 12.18 0.00 46.56 4.75
5 6 1.438651 TAGGTGCATGTCACGAAAGC 58.561 50.000 12.18 0.00 46.56 3.51
6 7 3.684305 TGAATAGGTGCATGTCACGAAAG 59.316 43.478 12.18 0.00 46.56 2.62
7 8 3.669536 TGAATAGGTGCATGTCACGAAA 58.330 40.909 12.18 3.49 46.56 3.46
8 9 3.326836 TGAATAGGTGCATGTCACGAA 57.673 42.857 12.18 5.39 46.56 3.85
9 10 3.326836 TTGAATAGGTGCATGTCACGA 57.673 42.857 12.18 5.50 46.56 4.35
10 11 3.622612 TGATTGAATAGGTGCATGTCACG 59.377 43.478 12.18 0.00 46.56 4.35
11 12 5.565592 TTGATTGAATAGGTGCATGTCAC 57.434 39.130 10.63 10.63 44.90 3.67
12 13 4.096833 GCTTGATTGAATAGGTGCATGTCA 59.903 41.667 0.00 0.00 0.00 3.58
13 14 4.337555 AGCTTGATTGAATAGGTGCATGTC 59.662 41.667 0.00 0.00 0.00 3.06
14 15 4.275810 AGCTTGATTGAATAGGTGCATGT 58.724 39.130 0.00 0.00 0.00 3.21
15 16 4.579340 AGAGCTTGATTGAATAGGTGCATG 59.421 41.667 0.00 0.00 0.00 4.06
16 17 4.579340 CAGAGCTTGATTGAATAGGTGCAT 59.421 41.667 0.00 0.00 0.00 3.96
17 18 3.943381 CAGAGCTTGATTGAATAGGTGCA 59.057 43.478 0.00 0.00 0.00 4.57
18 19 3.944015 ACAGAGCTTGATTGAATAGGTGC 59.056 43.478 0.00 0.00 0.00 5.01
19 20 5.163683 CCAACAGAGCTTGATTGAATAGGTG 60.164 44.000 6.40 0.00 0.00 4.00
20 21 4.946157 CCAACAGAGCTTGATTGAATAGGT 59.054 41.667 6.40 0.00 0.00 3.08
21 22 4.201990 GCCAACAGAGCTTGATTGAATAGG 60.202 45.833 6.40 0.00 0.00 2.57
22 23 4.397103 TGCCAACAGAGCTTGATTGAATAG 59.603 41.667 6.40 0.00 0.00 1.73
23 24 4.334552 TGCCAACAGAGCTTGATTGAATA 58.665 39.130 6.40 0.00 0.00 1.75
24 25 3.159472 TGCCAACAGAGCTTGATTGAAT 58.841 40.909 6.40 0.00 0.00 2.57
25 26 2.585330 TGCCAACAGAGCTTGATTGAA 58.415 42.857 6.40 0.00 0.00 2.69
26 27 2.275134 TGCCAACAGAGCTTGATTGA 57.725 45.000 6.40 0.00 0.00 2.57
27 28 2.555325 TCTTGCCAACAGAGCTTGATTG 59.445 45.455 0.00 0.00 0.00 2.67
28 29 2.555757 GTCTTGCCAACAGAGCTTGATT 59.444 45.455 0.00 0.00 0.00 2.57
29 30 2.157738 GTCTTGCCAACAGAGCTTGAT 58.842 47.619 0.00 0.00 0.00 2.57
30 31 1.134128 TGTCTTGCCAACAGAGCTTGA 60.134 47.619 0.00 0.00 0.00 3.02
31 32 1.311859 TGTCTTGCCAACAGAGCTTG 58.688 50.000 0.00 0.00 0.00 4.01
32 33 1.952296 CTTGTCTTGCCAACAGAGCTT 59.048 47.619 0.00 0.00 0.00 3.74
33 34 1.602311 CTTGTCTTGCCAACAGAGCT 58.398 50.000 0.00 0.00 0.00 4.09
34 35 0.595095 CCTTGTCTTGCCAACAGAGC 59.405 55.000 0.00 0.00 0.00 4.09
35 36 1.242076 CCCTTGTCTTGCCAACAGAG 58.758 55.000 0.00 0.00 0.00 3.35
36 37 0.550914 ACCCTTGTCTTGCCAACAGA 59.449 50.000 0.00 0.00 0.00 3.41
37 38 0.670162 CACCCTTGTCTTGCCAACAG 59.330 55.000 0.00 0.00 0.00 3.16
38 39 0.754957 CCACCCTTGTCTTGCCAACA 60.755 55.000 0.00 0.00 0.00 3.33
39 40 0.467290 TCCACCCTTGTCTTGCCAAC 60.467 55.000 0.00 0.00 0.00 3.77
40 41 0.178992 CTCCACCCTTGTCTTGCCAA 60.179 55.000 0.00 0.00 0.00 4.52
41 42 1.455849 CTCCACCCTTGTCTTGCCA 59.544 57.895 0.00 0.00 0.00 4.92
42 43 1.303643 CCTCCACCCTTGTCTTGCC 60.304 63.158 0.00 0.00 0.00 4.52
43 44 1.973812 GCCTCCACCCTTGTCTTGC 60.974 63.158 0.00 0.00 0.00 4.01
44 45 0.322008 GAGCCTCCACCCTTGTCTTG 60.322 60.000 0.00 0.00 0.00 3.02
45 46 1.492993 GGAGCCTCCACCCTTGTCTT 61.493 60.000 5.69 0.00 36.28 3.01
46 47 1.920835 GGAGCCTCCACCCTTGTCT 60.921 63.158 5.69 0.00 36.28 3.41
47 48 1.920835 AGGAGCCTCCACCCTTGTC 60.921 63.158 14.46 0.00 39.61 3.18
48 49 2.208349 AGGAGCCTCCACCCTTGT 59.792 61.111 14.46 0.00 39.61 3.16
49 50 2.673523 CAGGAGCCTCCACCCTTG 59.326 66.667 14.46 0.00 39.61 3.61
50 51 3.334054 GCAGGAGCCTCCACCCTT 61.334 66.667 14.46 0.00 39.61 3.95
51 52 4.664267 TGCAGGAGCCTCCACCCT 62.664 66.667 14.46 0.00 39.61 4.34
52 53 2.713531 TTTTGCAGGAGCCTCCACCC 62.714 60.000 14.46 0.82 39.61 4.61
53 54 1.228552 TTTTGCAGGAGCCTCCACC 60.229 57.895 14.46 3.53 39.61 4.61
54 55 1.527433 GGTTTTGCAGGAGCCTCCAC 61.527 60.000 14.46 5.12 39.61 4.02
55 56 1.228552 GGTTTTGCAGGAGCCTCCA 60.229 57.895 14.46 0.00 39.61 3.86
56 57 1.979155 GGGTTTTGCAGGAGCCTCC 60.979 63.158 1.26 1.26 41.13 4.30
57 58 0.328258 TAGGGTTTTGCAGGAGCCTC 59.672 55.000 21.02 5.72 42.44 4.70
58 59 0.777446 TTAGGGTTTTGCAGGAGCCT 59.223 50.000 21.12 21.12 45.19 4.58
59 60 0.888619 GTTAGGGTTTTGCAGGAGCC 59.111 55.000 10.63 10.63 41.13 4.70
60 61 1.269723 GTGTTAGGGTTTTGCAGGAGC 59.730 52.381 0.00 0.00 42.57 4.70
61 62 1.886542 GGTGTTAGGGTTTTGCAGGAG 59.113 52.381 0.00 0.00 0.00 3.69
62 63 1.479757 GGGTGTTAGGGTTTTGCAGGA 60.480 52.381 0.00 0.00 0.00 3.86
63 64 0.966179 GGGTGTTAGGGTTTTGCAGG 59.034 55.000 0.00 0.00 0.00 4.85
64 65 1.886542 GAGGGTGTTAGGGTTTTGCAG 59.113 52.381 0.00 0.00 0.00 4.41
65 66 1.497286 AGAGGGTGTTAGGGTTTTGCA 59.503 47.619 0.00 0.00 0.00 4.08
66 67 1.886542 CAGAGGGTGTTAGGGTTTTGC 59.113 52.381 0.00 0.00 0.00 3.68
67 68 2.884639 CACAGAGGGTGTTAGGGTTTTG 59.115 50.000 0.00 0.00 42.75 2.44
68 69 3.223674 CACAGAGGGTGTTAGGGTTTT 57.776 47.619 0.00 0.00 42.75 2.43
69 70 2.951229 CACAGAGGGTGTTAGGGTTT 57.049 50.000 0.00 0.00 42.75 3.27
79 80 4.664677 GACGCGTGCACAGAGGGT 62.665 66.667 20.70 14.72 0.00 4.34
81 82 4.363990 AGGACGCGTGCACAGAGG 62.364 66.667 32.28 4.78 0.00 3.69
82 83 2.807045 GAGGACGCGTGCACAGAG 60.807 66.667 32.28 13.54 0.00 3.35
83 84 3.145422 TTGAGGACGCGTGCACAGA 62.145 57.895 32.28 18.61 0.00 3.41
84 85 2.661537 TTGAGGACGCGTGCACAG 60.662 61.111 32.28 12.64 0.00 3.66
85 86 2.661537 CTTGAGGACGCGTGCACA 60.662 61.111 32.28 28.65 0.00 4.57
86 87 2.658707 GACTTGAGGACGCGTGCAC 61.659 63.158 32.28 26.26 0.00 4.57
87 88 2.355837 GACTTGAGGACGCGTGCA 60.356 61.111 32.28 17.01 0.00 4.57
88 89 1.495584 TTTGACTTGAGGACGCGTGC 61.496 55.000 24.26 24.26 0.00 5.34
89 90 0.934496 TTTTGACTTGAGGACGCGTG 59.066 50.000 20.70 2.70 0.00 5.34
90 91 1.878953 ATTTTGACTTGAGGACGCGT 58.121 45.000 13.85 13.85 0.00 6.01
91 92 4.600012 AATATTTTGACTTGAGGACGCG 57.400 40.909 3.53 3.53 0.00 6.01
92 93 5.220796 GGGTAATATTTTGACTTGAGGACGC 60.221 44.000 0.00 0.00 0.00 5.19
93 94 5.878116 TGGGTAATATTTTGACTTGAGGACG 59.122 40.000 0.00 0.00 0.00 4.79
94 95 6.657541 TGTGGGTAATATTTTGACTTGAGGAC 59.342 38.462 0.00 0.00 0.00 3.85
95 96 6.657541 GTGTGGGTAATATTTTGACTTGAGGA 59.342 38.462 0.00 0.00 0.00 3.71
96 97 6.403200 CGTGTGGGTAATATTTTGACTTGAGG 60.403 42.308 0.00 0.00 0.00 3.86
97 98 6.148811 ACGTGTGGGTAATATTTTGACTTGAG 59.851 38.462 0.00 0.00 0.00 3.02
98 99 5.998981 ACGTGTGGGTAATATTTTGACTTGA 59.001 36.000 0.00 0.00 0.00 3.02
99 100 6.072948 TGACGTGTGGGTAATATTTTGACTTG 60.073 38.462 0.00 0.00 0.00 3.16
100 101 5.998981 TGACGTGTGGGTAATATTTTGACTT 59.001 36.000 0.00 0.00 0.00 3.01
101 102 5.553123 TGACGTGTGGGTAATATTTTGACT 58.447 37.500 0.00 0.00 0.00 3.41
102 103 5.672819 GCTGACGTGTGGGTAATATTTTGAC 60.673 44.000 0.00 0.00 0.00 3.18
103 104 4.393680 GCTGACGTGTGGGTAATATTTTGA 59.606 41.667 0.00 0.00 0.00 2.69
104 105 4.394920 AGCTGACGTGTGGGTAATATTTTG 59.605 41.667 0.00 0.00 0.00 2.44
105 106 4.585879 AGCTGACGTGTGGGTAATATTTT 58.414 39.130 0.00 0.00 0.00 1.82
106 107 4.216411 AGCTGACGTGTGGGTAATATTT 57.784 40.909 0.00 0.00 0.00 1.40
107 108 3.906720 AGCTGACGTGTGGGTAATATT 57.093 42.857 0.00 0.00 0.00 1.28
108 109 3.906720 AAGCTGACGTGTGGGTAATAT 57.093 42.857 0.00 0.00 0.00 1.28
109 110 3.765511 AGTAAGCTGACGTGTGGGTAATA 59.234 43.478 0.00 0.00 0.00 0.98
110 111 2.565834 AGTAAGCTGACGTGTGGGTAAT 59.434 45.455 0.00 0.00 0.00 1.89
111 112 1.965643 AGTAAGCTGACGTGTGGGTAA 59.034 47.619 0.00 0.00 0.00 2.85
112 113 1.624336 AGTAAGCTGACGTGTGGGTA 58.376 50.000 0.00 0.00 0.00 3.69
113 114 0.756903 AAGTAAGCTGACGTGTGGGT 59.243 50.000 0.00 0.00 0.00 4.51
114 115 1.148310 CAAGTAAGCTGACGTGTGGG 58.852 55.000 8.88 0.00 0.00 4.61
115 116 1.792949 GTCAAGTAAGCTGACGTGTGG 59.207 52.381 15.77 0.00 31.62 4.17
116 117 2.218759 GTGTCAAGTAAGCTGACGTGTG 59.781 50.000 15.77 6.64 35.51 3.82
117 118 2.470821 GTGTCAAGTAAGCTGACGTGT 58.529 47.619 15.77 0.00 35.51 4.49
118 119 1.452025 CGTGTCAAGTAAGCTGACGTG 59.548 52.381 10.70 10.70 35.51 4.49
119 120 1.602165 CCGTGTCAAGTAAGCTGACGT 60.602 52.381 0.00 0.00 35.51 4.34
120 121 1.060713 CCGTGTCAAGTAAGCTGACG 58.939 55.000 0.00 0.00 35.51 4.35
121 122 2.059541 GACCGTGTCAAGTAAGCTGAC 58.940 52.381 0.00 0.00 32.09 3.51
122 123 1.961394 AGACCGTGTCAAGTAAGCTGA 59.039 47.619 6.78 0.00 34.60 4.26
123 124 2.440539 AGACCGTGTCAAGTAAGCTG 57.559 50.000 6.78 0.00 34.60 4.24
124 125 2.288886 GGAAGACCGTGTCAAGTAAGCT 60.289 50.000 6.78 0.00 34.60 3.74
125 126 2.067013 GGAAGACCGTGTCAAGTAAGC 58.933 52.381 6.78 0.00 34.60 3.09
126 127 2.612221 GGGGAAGACCGTGTCAAGTAAG 60.612 54.545 6.78 0.00 41.60 2.34
127 128 1.345415 GGGGAAGACCGTGTCAAGTAA 59.655 52.381 6.78 0.00 41.60 2.24
128 129 0.971386 GGGGAAGACCGTGTCAAGTA 59.029 55.000 6.78 0.00 41.60 2.24
129 130 0.763223 AGGGGAAGACCGTGTCAAGT 60.763 55.000 6.78 0.00 41.60 3.16
130 131 0.396811 AAGGGGAAGACCGTGTCAAG 59.603 55.000 6.78 0.00 41.60 3.02
131 132 0.107831 CAAGGGGAAGACCGTGTCAA 59.892 55.000 6.78 0.00 41.60 3.18
132 133 1.752198 CAAGGGGAAGACCGTGTCA 59.248 57.895 6.78 0.00 41.60 3.58
133 134 1.003718 CCAAGGGGAAGACCGTGTC 60.004 63.158 0.00 0.00 41.60 3.67
134 135 1.460689 TCCAAGGGGAAGACCGTGT 60.461 57.895 0.00 0.00 41.32 4.49
135 136 3.478780 TCCAAGGGGAAGACCGTG 58.521 61.111 0.00 0.00 41.32 4.94
150 151 2.040544 CCACACTTGGGATGCGTCC 61.041 63.158 17.28 17.28 44.29 4.79
151 152 2.690778 GCCACACTTGGGATGCGTC 61.691 63.158 0.00 0.00 44.15 5.19
152 153 2.672996 GCCACACTTGGGATGCGT 60.673 61.111 0.00 0.00 44.15 5.24
153 154 3.803082 CGCCACACTTGGGATGCG 61.803 66.667 0.00 0.00 44.15 4.73
154 155 2.359850 TCGCCACACTTGGGATGC 60.360 61.111 0.00 0.00 44.15 3.91
155 156 1.746615 CCTCGCCACACTTGGGATG 60.747 63.158 0.00 0.00 44.15 3.51
156 157 2.671070 CCTCGCCACACTTGGGAT 59.329 61.111 0.00 0.00 44.15 3.85
157 158 3.636231 CCCTCGCCACACTTGGGA 61.636 66.667 0.00 0.00 44.15 4.37
158 159 1.622607 TATCCCTCGCCACACTTGGG 61.623 60.000 0.00 0.00 44.15 4.12
160 161 0.824109 TCTATCCCTCGCCACACTTG 59.176 55.000 0.00 0.00 0.00 3.16
161 162 1.568504 TTCTATCCCTCGCCACACTT 58.431 50.000 0.00 0.00 0.00 3.16
162 163 1.794714 ATTCTATCCCTCGCCACACT 58.205 50.000 0.00 0.00 0.00 3.55
163 164 2.614057 CAAATTCTATCCCTCGCCACAC 59.386 50.000 0.00 0.00 0.00 3.82
164 165 2.238646 ACAAATTCTATCCCTCGCCACA 59.761 45.455 0.00 0.00 0.00 4.17
165 166 2.919228 ACAAATTCTATCCCTCGCCAC 58.081 47.619 0.00 0.00 0.00 5.01
166 167 3.709653 AGTACAAATTCTATCCCTCGCCA 59.290 43.478 0.00 0.00 0.00 5.69
167 168 4.338379 AGTACAAATTCTATCCCTCGCC 57.662 45.455 0.00 0.00 0.00 5.54
168 169 5.357257 TCAAGTACAAATTCTATCCCTCGC 58.643 41.667 0.00 0.00 0.00 5.03
169 170 5.463724 GCTCAAGTACAAATTCTATCCCTCG 59.536 44.000 0.00 0.00 0.00 4.63
170 171 6.587273 AGCTCAAGTACAAATTCTATCCCTC 58.413 40.000 0.00 0.00 0.00 4.30
171 172 6.567602 AGCTCAAGTACAAATTCTATCCCT 57.432 37.500 0.00 0.00 0.00 4.20
172 173 7.051000 AGAAGCTCAAGTACAAATTCTATCCC 58.949 38.462 0.00 0.00 0.00 3.85
173 174 9.601217 TTAGAAGCTCAAGTACAAATTCTATCC 57.399 33.333 0.00 0.00 30.36 2.59
176 177 9.436957 CCTTTAGAAGCTCAAGTACAAATTCTA 57.563 33.333 0.00 0.00 0.00 2.10
177 178 8.157476 TCCTTTAGAAGCTCAAGTACAAATTCT 58.843 33.333 0.00 0.00 0.00 2.40
178 179 8.324163 TCCTTTAGAAGCTCAAGTACAAATTC 57.676 34.615 0.00 0.00 0.00 2.17
179 180 8.691661 TTCCTTTAGAAGCTCAAGTACAAATT 57.308 30.769 0.00 0.00 0.00 1.82
180 181 8.329203 CTTCCTTTAGAAGCTCAAGTACAAAT 57.671 34.615 0.00 0.00 45.38 2.32
181 182 7.730364 CTTCCTTTAGAAGCTCAAGTACAAA 57.270 36.000 0.00 0.00 45.38 2.83
194 195 6.272324 TCTCCAAATCAGACCTTCCTTTAGAA 59.728 38.462 0.00 0.00 0.00 2.10
195 196 5.785423 TCTCCAAATCAGACCTTCCTTTAGA 59.215 40.000 0.00 0.00 0.00 2.10
196 197 6.054860 TCTCCAAATCAGACCTTCCTTTAG 57.945 41.667 0.00 0.00 0.00 1.85
197 198 5.548056 ACTCTCCAAATCAGACCTTCCTTTA 59.452 40.000 0.00 0.00 0.00 1.85
198 199 4.352298 ACTCTCCAAATCAGACCTTCCTTT 59.648 41.667 0.00 0.00 0.00 3.11
199 200 3.913163 ACTCTCCAAATCAGACCTTCCTT 59.087 43.478 0.00 0.00 0.00 3.36
200 201 3.525862 ACTCTCCAAATCAGACCTTCCT 58.474 45.455 0.00 0.00 0.00 3.36
201 202 3.990959 ACTCTCCAAATCAGACCTTCC 57.009 47.619 0.00 0.00 0.00 3.46
202 203 4.006319 CCAACTCTCCAAATCAGACCTTC 58.994 47.826 0.00 0.00 0.00 3.46
203 204 3.652869 TCCAACTCTCCAAATCAGACCTT 59.347 43.478 0.00 0.00 0.00 3.50
204 205 3.251484 TCCAACTCTCCAAATCAGACCT 58.749 45.455 0.00 0.00 0.00 3.85
205 206 3.703001 TCCAACTCTCCAAATCAGACC 57.297 47.619 0.00 0.00 0.00 3.85
206 207 5.105997 CCATTTCCAACTCTCCAAATCAGAC 60.106 44.000 0.00 0.00 0.00 3.51
207 208 5.012239 CCATTTCCAACTCTCCAAATCAGA 58.988 41.667 0.00 0.00 0.00 3.27
208 209 5.012239 TCCATTTCCAACTCTCCAAATCAG 58.988 41.667 0.00 0.00 0.00 2.90
209 210 4.996793 TCCATTTCCAACTCTCCAAATCA 58.003 39.130 0.00 0.00 0.00 2.57
210 211 5.982890 TTCCATTTCCAACTCTCCAAATC 57.017 39.130 0.00 0.00 0.00 2.17
211 212 6.745794 TTTTCCATTTCCAACTCTCCAAAT 57.254 33.333 0.00 0.00 0.00 2.32
212 213 6.156083 ACTTTTTCCATTTCCAACTCTCCAAA 59.844 34.615 0.00 0.00 0.00 3.28
213 214 5.660864 ACTTTTTCCATTTCCAACTCTCCAA 59.339 36.000 0.00 0.00 0.00 3.53
214 215 5.208121 ACTTTTTCCATTTCCAACTCTCCA 58.792 37.500 0.00 0.00 0.00 3.86
215 216 5.791336 ACTTTTTCCATTTCCAACTCTCC 57.209 39.130 0.00 0.00 0.00 3.71
216 217 7.176690 TGGATACTTTTTCCATTTCCAACTCTC 59.823 37.037 0.00 0.00 38.35 3.20
217 218 7.010160 TGGATACTTTTTCCATTTCCAACTCT 58.990 34.615 0.00 0.00 38.35 3.24
218 219 7.176690 TCTGGATACTTTTTCCATTTCCAACTC 59.823 37.037 0.00 0.00 42.26 3.01
219 220 7.010160 TCTGGATACTTTTTCCATTTCCAACT 58.990 34.615 0.00 0.00 42.26 3.16
220 221 7.227049 TCTGGATACTTTTTCCATTTCCAAC 57.773 36.000 0.00 0.00 42.26 3.77
221 222 8.434589 AATCTGGATACTTTTTCCATTTCCAA 57.565 30.769 0.00 0.00 42.26 3.53
222 223 9.540538 TTAATCTGGATACTTTTTCCATTTCCA 57.459 29.630 0.00 0.00 42.26 3.53
239 240 9.347240 GGATTCAATGATCTCTTTTAATCTGGA 57.653 33.333 0.00 0.00 30.66 3.86
240 241 8.574737 GGGATTCAATGATCTCTTTTAATCTGG 58.425 37.037 0.00 0.00 30.66 3.86
241 242 9.352191 AGGGATTCAATGATCTCTTTTAATCTG 57.648 33.333 0.00 0.00 32.98 2.90
246 247 9.439461 TCTCTAGGGATTCAATGATCTCTTTTA 57.561 33.333 0.00 0.00 37.93 1.52
247 248 8.329346 TCTCTAGGGATTCAATGATCTCTTTT 57.671 34.615 0.00 0.00 37.93 2.27
248 249 7.788867 TCTCTCTAGGGATTCAATGATCTCTTT 59.211 37.037 0.00 0.00 37.93 2.52
249 250 7.304479 TCTCTCTAGGGATTCAATGATCTCTT 58.696 38.462 0.00 0.00 37.93 2.85
250 251 6.862225 TCTCTCTAGGGATTCAATGATCTCT 58.138 40.000 0.00 1.83 40.02 3.10
251 252 6.153340 CCTCTCTCTAGGGATTCAATGATCTC 59.847 46.154 0.00 0.00 32.55 2.75
252 253 6.018469 CCTCTCTCTAGGGATTCAATGATCT 58.982 44.000 0.00 0.00 32.55 2.75
253 254 6.284891 CCTCTCTCTAGGGATTCAATGATC 57.715 45.833 0.00 0.00 32.55 2.92
265 266 2.944129 CCTTGAGTCCCTCTCTCTAGG 58.056 57.143 8.45 8.45 43.85 3.02
266 267 2.306847 GCCTTGAGTCCCTCTCTCTAG 58.693 57.143 0.00 0.00 43.13 2.43
267 268 1.641192 TGCCTTGAGTCCCTCTCTCTA 59.359 52.381 0.00 0.00 43.13 2.43
268 269 0.411452 TGCCTTGAGTCCCTCTCTCT 59.589 55.000 0.00 0.00 43.13 3.10
269 270 0.823460 CTGCCTTGAGTCCCTCTCTC 59.177 60.000 0.00 0.00 43.13 3.20
270 271 1.264045 GCTGCCTTGAGTCCCTCTCT 61.264 60.000 0.00 0.00 43.13 3.10
271 272 1.220477 GCTGCCTTGAGTCCCTCTC 59.780 63.158 0.00 0.00 43.03 3.20
272 273 2.297129 GGCTGCCTTGAGTCCCTCT 61.297 63.158 12.43 0.00 0.00 3.69
273 274 2.129555 TTGGCTGCCTTGAGTCCCTC 62.130 60.000 21.03 0.00 0.00 4.30
274 275 1.504275 ATTGGCTGCCTTGAGTCCCT 61.504 55.000 21.03 0.00 0.00 4.20
275 276 0.613012 AATTGGCTGCCTTGAGTCCC 60.613 55.000 21.03 0.00 0.00 4.46
276 277 1.260544 AAATTGGCTGCCTTGAGTCC 58.739 50.000 21.03 0.00 0.00 3.85
277 278 4.725790 ATAAAATTGGCTGCCTTGAGTC 57.274 40.909 21.03 0.00 0.00 3.36
278 279 4.380867 CGAATAAAATTGGCTGCCTTGAGT 60.381 41.667 21.03 5.16 0.00 3.41
279 280 4.107622 CGAATAAAATTGGCTGCCTTGAG 58.892 43.478 21.03 0.00 0.00 3.02
280 281 3.119173 CCGAATAAAATTGGCTGCCTTGA 60.119 43.478 21.03 6.34 0.00 3.02
281 282 3.119173 TCCGAATAAAATTGGCTGCCTTG 60.119 43.478 21.03 0.26 0.00 3.61
282 283 3.096092 TCCGAATAAAATTGGCTGCCTT 58.904 40.909 21.03 8.20 0.00 4.35
283 284 2.689983 CTCCGAATAAAATTGGCTGCCT 59.310 45.455 21.03 0.83 0.00 4.75
284 285 2.223805 CCTCCGAATAAAATTGGCTGCC 60.224 50.000 12.87 12.87 0.00 4.85
285 286 2.427095 ACCTCCGAATAAAATTGGCTGC 59.573 45.455 0.00 0.00 0.00 5.25
286 287 3.947834 AGACCTCCGAATAAAATTGGCTG 59.052 43.478 0.00 0.00 0.00 4.85
287 288 4.236527 AGACCTCCGAATAAAATTGGCT 57.763 40.909 0.00 0.00 0.00 4.75
288 289 5.365619 TCTAGACCTCCGAATAAAATTGGC 58.634 41.667 0.00 0.00 0.00 4.52
289 290 7.715249 TCAATCTAGACCTCCGAATAAAATTGG 59.285 37.037 0.00 0.00 0.00 3.16
290 291 8.662781 TCAATCTAGACCTCCGAATAAAATTG 57.337 34.615 0.00 0.00 0.00 2.32
291 292 8.705594 TCTCAATCTAGACCTCCGAATAAAATT 58.294 33.333 0.00 0.00 0.00 1.82
292 293 8.251383 TCTCAATCTAGACCTCCGAATAAAAT 57.749 34.615 0.00 0.00 0.00 1.82
293 294 7.655521 TCTCAATCTAGACCTCCGAATAAAA 57.344 36.000 0.00 0.00 0.00 1.52
294 295 7.255977 CCATCTCAATCTAGACCTCCGAATAAA 60.256 40.741 0.00 0.00 0.00 1.40
295 296 6.209589 CCATCTCAATCTAGACCTCCGAATAA 59.790 42.308 0.00 0.00 0.00 1.40
296 297 5.712446 CCATCTCAATCTAGACCTCCGAATA 59.288 44.000 0.00 0.00 0.00 1.75
297 298 4.526262 CCATCTCAATCTAGACCTCCGAAT 59.474 45.833 0.00 0.00 0.00 3.34
298 299 3.891977 CCATCTCAATCTAGACCTCCGAA 59.108 47.826 0.00 0.00 0.00 4.30
299 300 3.491342 CCATCTCAATCTAGACCTCCGA 58.509 50.000 0.00 0.00 0.00 4.55
300 301 2.560542 CCCATCTCAATCTAGACCTCCG 59.439 54.545 0.00 0.00 0.00 4.63
301 302 3.576550 GACCCATCTCAATCTAGACCTCC 59.423 52.174 0.00 0.00 0.00 4.30
302 303 4.219115 TGACCCATCTCAATCTAGACCTC 58.781 47.826 0.00 0.00 0.00 3.85
303 304 4.271807 TGACCCATCTCAATCTAGACCT 57.728 45.455 0.00 0.00 0.00 3.85
304 305 4.407296 AGTTGACCCATCTCAATCTAGACC 59.593 45.833 0.00 0.00 32.78 3.85
305 306 5.606348 AGTTGACCCATCTCAATCTAGAC 57.394 43.478 0.00 0.00 32.78 2.59
306 307 7.921041 ATTAGTTGACCCATCTCAATCTAGA 57.079 36.000 0.00 0.00 32.78 2.43
307 308 8.206867 TCAATTAGTTGACCCATCTCAATCTAG 58.793 37.037 0.00 0.00 39.36 2.43
308 309 8.089625 TCAATTAGTTGACCCATCTCAATCTA 57.910 34.615 0.00 0.00 39.36 1.98
309 310 6.962182 TCAATTAGTTGACCCATCTCAATCT 58.038 36.000 0.00 0.00 39.36 2.40
310 311 7.500227 TCATCAATTAGTTGACCCATCTCAATC 59.500 37.037 2.38 0.00 46.43 2.67
311 312 7.348815 TCATCAATTAGTTGACCCATCTCAAT 58.651 34.615 2.38 0.00 46.43 2.57
312 313 6.720309 TCATCAATTAGTTGACCCATCTCAA 58.280 36.000 2.38 0.00 46.43 3.02
313 314 6.312141 TCATCAATTAGTTGACCCATCTCA 57.688 37.500 2.38 0.00 46.43 3.27
314 315 7.500227 TCAATCATCAATTAGTTGACCCATCTC 59.500 37.037 2.38 0.00 46.43 2.75
315 316 7.348815 TCAATCATCAATTAGTTGACCCATCT 58.651 34.615 2.38 0.00 46.43 2.90
316 317 7.572523 TCAATCATCAATTAGTTGACCCATC 57.427 36.000 2.38 0.00 46.43 3.51
317 318 7.069085 CCTTCAATCATCAATTAGTTGACCCAT 59.931 37.037 2.38 0.00 46.43 4.00
318 319 6.377996 CCTTCAATCATCAATTAGTTGACCCA 59.622 38.462 2.38 0.00 46.43 4.51
319 320 6.603201 TCCTTCAATCATCAATTAGTTGACCC 59.397 38.462 2.38 0.00 46.43 4.46
320 321 7.630242 TCCTTCAATCATCAATTAGTTGACC 57.370 36.000 2.38 0.00 46.43 4.02
321 322 8.514594 TGTTCCTTCAATCATCAATTAGTTGAC 58.485 33.333 2.38 0.00 46.43 3.18
323 324 9.695526 TTTGTTCCTTCAATCATCAATTAGTTG 57.304 29.630 0.00 0.00 36.65 3.16
325 326 9.865321 CATTTGTTCCTTCAATCATCAATTAGT 57.135 29.630 0.00 0.00 0.00 2.24
328 329 9.953565 ATTCATTTGTTCCTTCAATCATCAATT 57.046 25.926 0.00 0.00 0.00 2.32
329 330 9.378551 CATTCATTTGTTCCTTCAATCATCAAT 57.621 29.630 0.00 0.00 0.00 2.57
330 331 7.820386 CCATTCATTTGTTCCTTCAATCATCAA 59.180 33.333 0.00 0.00 0.00 2.57
331 332 7.178805 TCCATTCATTTGTTCCTTCAATCATCA 59.821 33.333 0.00 0.00 0.00 3.07
332 333 7.549839 TCCATTCATTTGTTCCTTCAATCATC 58.450 34.615 0.00 0.00 0.00 2.92
333 334 7.484993 TCCATTCATTTGTTCCTTCAATCAT 57.515 32.000 0.00 0.00 0.00 2.45
334 335 6.914654 TCCATTCATTTGTTCCTTCAATCA 57.085 33.333 0.00 0.00 0.00 2.57
335 336 8.036575 TGATTCCATTCATTTGTTCCTTCAATC 58.963 33.333 0.00 0.00 0.00 2.67
336 337 7.909518 TGATTCCATTCATTTGTTCCTTCAAT 58.090 30.769 0.00 0.00 0.00 2.57
337 338 7.300556 TGATTCCATTCATTTGTTCCTTCAA 57.699 32.000 0.00 0.00 0.00 2.69
338 339 6.071221 CCTGATTCCATTCATTTGTTCCTTCA 60.071 38.462 0.00 0.00 0.00 3.02
339 340 6.153340 TCCTGATTCCATTCATTTGTTCCTTC 59.847 38.462 0.00 0.00 0.00 3.46
340 341 6.018469 TCCTGATTCCATTCATTTGTTCCTT 58.982 36.000 0.00 0.00 0.00 3.36
341 342 5.582953 TCCTGATTCCATTCATTTGTTCCT 58.417 37.500 0.00 0.00 0.00 3.36
342 343 5.920193 TCCTGATTCCATTCATTTGTTCC 57.080 39.130 0.00 0.00 0.00 3.62
343 344 6.928520 AGTTCCTGATTCCATTCATTTGTTC 58.071 36.000 0.00 0.00 0.00 3.18
344 345 6.923199 AGTTCCTGATTCCATTCATTTGTT 57.077 33.333 0.00 0.00 0.00 2.83
345 346 8.599624 ATTAGTTCCTGATTCCATTCATTTGT 57.400 30.769 0.00 0.00 0.00 2.83
346 347 8.910944 AGATTAGTTCCTGATTCCATTCATTTG 58.089 33.333 0.00 0.00 0.00 2.32
347 348 9.129532 GAGATTAGTTCCTGATTCCATTCATTT 57.870 33.333 0.00 0.00 0.00 2.32
348 349 7.723172 GGAGATTAGTTCCTGATTCCATTCATT 59.277 37.037 0.00 0.00 0.00 2.57
349 350 7.230027 GGAGATTAGTTCCTGATTCCATTCAT 58.770 38.462 0.00 0.00 0.00 2.57
350 351 6.409695 GGGAGATTAGTTCCTGATTCCATTCA 60.410 42.308 0.00 0.00 35.01 2.57
351 352 6.000840 GGGAGATTAGTTCCTGATTCCATTC 58.999 44.000 0.00 0.00 35.01 2.67
352 353 5.433051 TGGGAGATTAGTTCCTGATTCCATT 59.567 40.000 0.00 0.00 35.01 3.16
353 354 4.977739 TGGGAGATTAGTTCCTGATTCCAT 59.022 41.667 0.00 0.00 35.01 3.41
354 355 4.370776 TGGGAGATTAGTTCCTGATTCCA 58.629 43.478 0.00 0.00 35.01 3.53
355 356 5.373812 TTGGGAGATTAGTTCCTGATTCC 57.626 43.478 0.00 0.00 35.01 3.01
356 357 7.286313 AGATTTGGGAGATTAGTTCCTGATTC 58.714 38.462 0.00 0.00 35.01 2.52
357 358 7.218314 AGATTTGGGAGATTAGTTCCTGATT 57.782 36.000 0.00 0.00 35.01 2.57
358 359 6.838401 AGATTTGGGAGATTAGTTCCTGAT 57.162 37.500 0.00 0.00 35.01 2.90
359 360 6.642733 AAGATTTGGGAGATTAGTTCCTGA 57.357 37.500 0.00 0.00 35.01 3.86
360 361 6.886459 TGAAAGATTTGGGAGATTAGTTCCTG 59.114 38.462 0.00 0.00 35.01 3.86
361 362 6.887002 GTGAAAGATTTGGGAGATTAGTTCCT 59.113 38.462 0.00 0.00 35.01 3.36
362 363 6.095580 GGTGAAAGATTTGGGAGATTAGTTCC 59.904 42.308 0.00 0.00 0.00 3.62
363 364 6.095580 GGGTGAAAGATTTGGGAGATTAGTTC 59.904 42.308 0.00 0.00 0.00 3.01
364 365 5.952347 GGGTGAAAGATTTGGGAGATTAGTT 59.048 40.000 0.00 0.00 0.00 2.24
365 366 5.510430 GGGTGAAAGATTTGGGAGATTAGT 58.490 41.667 0.00 0.00 0.00 2.24
366 367 4.889995 GGGGTGAAAGATTTGGGAGATTAG 59.110 45.833 0.00 0.00 0.00 1.73
367 368 4.544152 AGGGGTGAAAGATTTGGGAGATTA 59.456 41.667 0.00 0.00 0.00 1.75
368 369 3.337909 AGGGGTGAAAGATTTGGGAGATT 59.662 43.478 0.00 0.00 0.00 2.40
369 370 2.929043 AGGGGTGAAAGATTTGGGAGAT 59.071 45.455 0.00 0.00 0.00 2.75
370 371 2.358258 AGGGGTGAAAGATTTGGGAGA 58.642 47.619 0.00 0.00 0.00 3.71
371 372 2.907458 AGGGGTGAAAGATTTGGGAG 57.093 50.000 0.00 0.00 0.00 4.30
372 373 2.554344 CGAAGGGGTGAAAGATTTGGGA 60.554 50.000 0.00 0.00 0.00 4.37
373 374 1.818674 CGAAGGGGTGAAAGATTTGGG 59.181 52.381 0.00 0.00 0.00 4.12
374 375 2.790433 TCGAAGGGGTGAAAGATTTGG 58.210 47.619 0.00 0.00 0.00 3.28
375 376 3.428045 GCATCGAAGGGGTGAAAGATTTG 60.428 47.826 0.00 0.00 0.00 2.32
376 377 2.755103 GCATCGAAGGGGTGAAAGATTT 59.245 45.455 0.00 0.00 0.00 2.17
377 378 2.290896 TGCATCGAAGGGGTGAAAGATT 60.291 45.455 0.00 0.00 0.00 2.40
378 379 1.281867 TGCATCGAAGGGGTGAAAGAT 59.718 47.619 0.00 0.00 0.00 2.40
379 380 0.690192 TGCATCGAAGGGGTGAAAGA 59.310 50.000 0.00 0.00 0.00 2.52
380 381 1.089920 CTGCATCGAAGGGGTGAAAG 58.910 55.000 0.00 0.00 0.00 2.62
381 382 0.400213 ACTGCATCGAAGGGGTGAAA 59.600 50.000 0.00 0.00 0.00 2.69
382 383 0.321564 CACTGCATCGAAGGGGTGAA 60.322 55.000 0.00 0.00 0.00 3.18
383 384 1.296392 CACTGCATCGAAGGGGTGA 59.704 57.895 0.00 0.00 0.00 4.02
384 385 1.746615 CCACTGCATCGAAGGGGTG 60.747 63.158 0.00 1.12 33.15 4.61
385 386 1.488705 TTCCACTGCATCGAAGGGGT 61.489 55.000 3.84 0.00 39.44 4.95
386 387 0.322456 TTTCCACTGCATCGAAGGGG 60.322 55.000 0.00 0.00 39.82 4.79
387 388 1.755179 ATTTCCACTGCATCGAAGGG 58.245 50.000 0.00 0.00 0.00 3.95
388 389 3.504863 CAAATTTCCACTGCATCGAAGG 58.495 45.455 0.00 0.00 0.00 3.46
389 390 2.919229 GCAAATTTCCACTGCATCGAAG 59.081 45.455 0.00 0.00 36.09 3.79
390 391 2.295629 TGCAAATTTCCACTGCATCGAA 59.704 40.909 0.00 0.00 41.01 3.71
391 392 1.885233 TGCAAATTTCCACTGCATCGA 59.115 42.857 0.00 0.00 41.01 3.59
392 393 2.350899 TGCAAATTTCCACTGCATCG 57.649 45.000 0.00 0.00 41.01 3.84
393 394 5.616488 ATTTTGCAAATTTCCACTGCATC 57.384 34.783 13.65 0.00 44.99 3.91
394 395 7.507733 TTAATTTTGCAAATTTCCACTGCAT 57.492 28.000 19.53 1.78 44.99 3.96
395 396 6.932356 TTAATTTTGCAAATTTCCACTGCA 57.068 29.167 19.53 0.00 44.04 4.41
396 397 8.530720 GTTTTTAATTTTGCAAATTTCCACTGC 58.469 29.630 19.53 6.89 36.60 4.40
397 398 9.018716 GGTTTTTAATTTTGCAAATTTCCACTG 57.981 29.630 19.53 0.00 0.00 3.66
398 399 8.194104 GGGTTTTTAATTTTGCAAATTTCCACT 58.806 29.630 19.53 2.33 0.00 4.00
399 400 7.436673 GGGGTTTTTAATTTTGCAAATTTCCAC 59.563 33.333 19.53 13.04 0.00 4.02
400 401 7.343057 AGGGGTTTTTAATTTTGCAAATTTCCA 59.657 29.630 19.53 2.94 0.00 3.53
401 402 7.721402 AGGGGTTTTTAATTTTGCAAATTTCC 58.279 30.769 19.53 14.60 0.00 3.13
402 403 8.629158 AGAGGGGTTTTTAATTTTGCAAATTTC 58.371 29.630 19.53 7.86 0.00 2.17
403 404 8.412456 CAGAGGGGTTTTTAATTTTGCAAATTT 58.588 29.630 19.77 19.77 0.00 1.82
404 405 7.469870 GCAGAGGGGTTTTTAATTTTGCAAATT 60.470 33.333 13.65 6.74 0.00 1.82
405 406 6.016360 GCAGAGGGGTTTTTAATTTTGCAAAT 60.016 34.615 13.65 1.10 0.00 2.32
406 407 5.298026 GCAGAGGGGTTTTTAATTTTGCAAA 59.702 36.000 8.05 8.05 0.00 3.68
407 408 4.819088 GCAGAGGGGTTTTTAATTTTGCAA 59.181 37.500 0.00 0.00 0.00 4.08
408 409 4.384940 GCAGAGGGGTTTTTAATTTTGCA 58.615 39.130 0.00 0.00 0.00 4.08
409 410 3.431912 CGCAGAGGGGTTTTTAATTTTGC 59.568 43.478 0.00 0.00 0.00 3.68
410 411 3.993736 CCGCAGAGGGGTTTTTAATTTTG 59.006 43.478 0.00 0.00 35.97 2.44
411 412 3.898741 TCCGCAGAGGGGTTTTTAATTTT 59.101 39.130 0.00 0.00 41.52 1.82
412 413 3.502356 TCCGCAGAGGGGTTTTTAATTT 58.498 40.909 0.00 0.00 41.52 1.82
413 414 3.163616 TCCGCAGAGGGGTTTTTAATT 57.836 42.857 0.00 0.00 41.52 1.40
414 415 2.891191 TCCGCAGAGGGGTTTTTAAT 57.109 45.000 0.00 0.00 41.52 1.40
415 416 2.224917 ACATCCGCAGAGGGGTTTTTAA 60.225 45.455 0.00 0.00 41.52 1.52
416 417 1.353022 ACATCCGCAGAGGGGTTTTTA 59.647 47.619 0.00 0.00 41.52 1.52
417 418 0.112412 ACATCCGCAGAGGGGTTTTT 59.888 50.000 0.00 0.00 41.52 1.94
418 419 0.609131 CACATCCGCAGAGGGGTTTT 60.609 55.000 0.00 0.00 41.52 2.43
419 420 1.002134 CACATCCGCAGAGGGGTTT 60.002 57.895 0.00 0.00 41.52 3.27
420 421 2.671070 CACATCCGCAGAGGGGTT 59.329 61.111 0.00 0.00 41.52 4.11
421 422 3.402681 CCACATCCGCAGAGGGGT 61.403 66.667 0.00 0.00 41.52 4.95
422 423 3.083349 TCCACATCCGCAGAGGGG 61.083 66.667 0.00 0.00 41.52 4.79
423 424 2.187946 GTCCACATCCGCAGAGGG 59.812 66.667 0.00 0.00 41.52 4.30
424 425 2.021068 ATCGTCCACATCCGCAGAGG 62.021 60.000 0.00 0.00 42.97 3.69
425 426 0.179100 AATCGTCCACATCCGCAGAG 60.179 55.000 0.00 0.00 0.00 3.35
426 427 0.460109 CAATCGTCCACATCCGCAGA 60.460 55.000 0.00 0.00 0.00 4.26
427 428 0.740868 ACAATCGTCCACATCCGCAG 60.741 55.000 0.00 0.00 0.00 5.18
428 429 1.018752 CACAATCGTCCACATCCGCA 61.019 55.000 0.00 0.00 0.00 5.69
429 430 1.019278 ACACAATCGTCCACATCCGC 61.019 55.000 0.00 0.00 0.00 5.54
430 431 0.721154 CACACAATCGTCCACATCCG 59.279 55.000 0.00 0.00 0.00 4.18
431 432 1.086696 CCACACAATCGTCCACATCC 58.913 55.000 0.00 0.00 0.00 3.51
432 433 0.447801 GCCACACAATCGTCCACATC 59.552 55.000 0.00 0.00 0.00 3.06
433 434 0.036732 AGCCACACAATCGTCCACAT 59.963 50.000 0.00 0.00 0.00 3.21
434 435 0.179032 AAGCCACACAATCGTCCACA 60.179 50.000 0.00 0.00 0.00 4.17
435 436 0.238289 CAAGCCACACAATCGTCCAC 59.762 55.000 0.00 0.00 0.00 4.02
436 437 0.888736 CCAAGCCACACAATCGTCCA 60.889 55.000 0.00 0.00 0.00 4.02
437 438 1.875963 CCAAGCCACACAATCGTCC 59.124 57.895 0.00 0.00 0.00 4.79
438 439 1.210155 GCCAAGCCACACAATCGTC 59.790 57.895 0.00 0.00 0.00 4.20
439 440 2.616330 CGCCAAGCCACACAATCGT 61.616 57.895 0.00 0.00 0.00 3.73
440 441 2.176546 CGCCAAGCCACACAATCG 59.823 61.111 0.00 0.00 0.00 3.34
441 442 1.237285 ACTCGCCAAGCCACACAATC 61.237 55.000 0.00 0.00 0.00 2.67
442 443 1.228245 ACTCGCCAAGCCACACAAT 60.228 52.632 0.00 0.00 0.00 2.71
443 444 2.186160 CACTCGCCAAGCCACACAA 61.186 57.895 0.00 0.00 0.00 3.33
444 445 2.591429 CACTCGCCAAGCCACACA 60.591 61.111 0.00 0.00 0.00 3.72
445 446 1.237285 ATTCACTCGCCAAGCCACAC 61.237 55.000 0.00 0.00 0.00 3.82
446 447 0.537143 AATTCACTCGCCAAGCCACA 60.537 50.000 0.00 0.00 0.00 4.17
447 448 0.109597 CAATTCACTCGCCAAGCCAC 60.110 55.000 0.00 0.00 0.00 5.01
448 449 1.865788 GCAATTCACTCGCCAAGCCA 61.866 55.000 0.00 0.00 0.00 4.75
449 450 1.153958 GCAATTCACTCGCCAAGCC 60.154 57.895 0.00 0.00 0.00 4.35
450 451 0.039256 TTGCAATTCACTCGCCAAGC 60.039 50.000 0.00 0.00 0.00 4.01
451 452 1.536766 TCTTGCAATTCACTCGCCAAG 59.463 47.619 0.00 0.00 0.00 3.61
452 453 1.603456 TCTTGCAATTCACTCGCCAA 58.397 45.000 0.00 0.00 0.00 4.52
453 454 1.603456 TTCTTGCAATTCACTCGCCA 58.397 45.000 0.00 0.00 0.00 5.69
454 455 2.319472 GTTTCTTGCAATTCACTCGCC 58.681 47.619 0.00 0.00 0.00 5.54
538 539 5.240623 TCTGCAAAACATTTACTGAATCCGT 59.759 36.000 0.00 0.00 0.00 4.69
552 553 0.667453 TCAGCGCAATCTGCAAAACA 59.333 45.000 11.47 0.00 45.36 2.83
567 568 1.621107 CGCCAAATGACATGTTCAGC 58.379 50.000 0.00 0.00 37.77 4.26
597 598 2.833227 CCCCACCTGTCGGAAACA 59.167 61.111 0.00 0.00 36.18 2.83
657 658 1.525197 CGCGTCTGTCTTAAGCAAACA 59.475 47.619 0.00 0.00 0.00 2.83
704 705 0.761187 AGCGAGATGTGGTATGGCAT 59.239 50.000 4.88 4.88 0.00 4.40
709 710 2.621055 GAGAGTGAGCGAGATGTGGTAT 59.379 50.000 0.00 0.00 0.00 2.73
710 711 2.017782 GAGAGTGAGCGAGATGTGGTA 58.982 52.381 0.00 0.00 0.00 3.25
725 726 1.678728 CGAGGTGAGAGCAGAGAGAGT 60.679 57.143 0.00 0.00 0.00 3.24
771 776 1.076705 GGAGCAAATGGGAGGGGAC 60.077 63.158 0.00 0.00 0.00 4.46
858 891 2.943690 GTCAGAGGAGATGTACTACGCA 59.056 50.000 0.00 0.00 33.99 5.24
862 895 4.443175 GGAGTCGTCAGAGGAGATGTACTA 60.443 50.000 0.00 0.00 0.00 1.82
999 1033 0.673644 CCCTCGAACAACGGCTCATT 60.674 55.000 0.00 0.00 42.82 2.57
1016 1050 0.951040 CAAGTCGTCAGCAAGACCCC 60.951 60.000 4.04 0.00 44.66 4.95
1089 1123 3.197766 TGAACCTCCTACCAGTGCTTATG 59.802 47.826 0.00 0.00 0.00 1.90
1218 1335 7.200434 ACTATGAACCCTAGAACATGAACAT 57.800 36.000 0.00 0.00 0.00 2.71
1490 1650 6.140303 AGCCACAACTTATGAATAGCATTG 57.860 37.500 0.00 0.00 38.44 2.82
1597 1759 2.104792 GCATATGTCTCCTGCAACCCTA 59.895 50.000 4.29 0.00 35.96 3.53
1600 1762 0.940126 CGCATATGTCTCCTGCAACC 59.060 55.000 4.29 0.00 35.64 3.77
1618 1780 4.214437 GTTCACATCTTCAACAAGCTTCG 58.786 43.478 0.00 0.00 0.00 3.79
1793 1957 3.788227 TTCCTAATGACAGTGGCTTGT 57.212 42.857 0.00 0.00 0.00 3.16
2126 2311 5.069781 ACAAGCTTTCCTCCATAGCTACTAG 59.930 44.000 0.00 0.00 44.05 2.57
2249 2495 6.369065 GCAGTATTATGTTAGTATGCCAGGTC 59.631 42.308 0.00 0.00 0.00 3.85
2254 2511 5.122396 GCCAGCAGTATTATGTTAGTATGCC 59.878 44.000 0.00 0.00 32.95 4.40
2256 2513 7.912056 ATGCCAGCAGTATTATGTTAGTATG 57.088 36.000 0.00 0.00 0.00 2.39
2293 2644 3.977134 ATGTCAGGCTATCTATGCAGG 57.023 47.619 0.00 0.00 0.00 4.85
2306 2664 8.554528 CAGTATGAGTTTGCTATAAATGTCAGG 58.445 37.037 0.00 0.00 39.69 3.86
2314 2673 6.176896 TGCCAACAGTATGAGTTTGCTATAA 58.823 36.000 0.00 0.00 39.69 0.98
2315 2674 5.739959 TGCCAACAGTATGAGTTTGCTATA 58.260 37.500 0.00 0.00 39.69 1.31
2320 2679 5.878332 TGTATGCCAACAGTATGAGTTTG 57.122 39.130 0.00 0.00 39.69 2.93
2322 2681 7.124573 TCTATGTATGCCAACAGTATGAGTT 57.875 36.000 0.00 0.00 39.69 3.01
2323 2682 6.731292 TCTATGTATGCCAACAGTATGAGT 57.269 37.500 0.00 0.00 39.69 3.41
2324 2683 8.526978 ACTATCTATGTATGCCAACAGTATGAG 58.473 37.037 0.00 0.00 39.69 2.90
2326 2685 9.574458 GTACTATCTATGTATGCCAACAGTATG 57.426 37.037 0.00 0.00 46.00 2.39
2327 2686 8.750298 GGTACTATCTATGTATGCCAACAGTAT 58.250 37.037 0.00 0.00 31.70 2.12
2330 2689 7.093354 CAGGTACTATCTATGTATGCCAACAG 58.907 42.308 0.00 0.00 36.02 3.16
2331 2690 6.518369 GCAGGTACTATCTATGTATGCCAACA 60.518 42.308 0.00 0.00 36.02 3.33
2332 2691 5.869888 GCAGGTACTATCTATGTATGCCAAC 59.130 44.000 0.00 0.00 36.02 3.77
2333 2692 5.542251 TGCAGGTACTATCTATGTATGCCAA 59.458 40.000 0.00 0.00 36.02 4.52
2392 2774 5.542251 TGCAGGTACTATCTATGTATGCCAA 59.458 40.000 0.00 0.00 36.02 4.52
2496 2957 9.422196 CAGTAGAAGAAAAAGTTTAGTTTCGTG 57.578 33.333 0.00 0.00 38.50 4.35
2603 3065 0.610687 CCAAGAAGAAGAGGGCGACT 59.389 55.000 0.00 0.00 0.00 4.18
2650 3112 2.607750 AAGAAGAGGAGGGCGGCA 60.608 61.111 12.47 0.00 0.00 5.69
2732 3206 0.332632 CCATGGAGGGGCAGAAGAAA 59.667 55.000 5.56 0.00 0.00 2.52
2867 3356 4.163649 TCCGAGTCCTCTGATGACTACTAA 59.836 45.833 14.36 0.73 42.94 2.24
2936 3426 1.066143 CAACAACGCCTACTGGGAGAT 60.066 52.381 0.00 0.00 38.31 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.