Multiple sequence alignment - TraesCS2B01G574500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G574500 chr2B 100.000 3285 0 0 1 3285 763876419 763879703 0.000000e+00 6067.0
1 TraesCS2B01G574500 chr2B 82.090 335 51 1 1001 1335 763880909 763880584 8.980000e-71 278.0
2 TraesCS2B01G574500 chr2D 91.172 1903 148 13 752 2636 621976502 621978402 0.000000e+00 2566.0
3 TraesCS2B01G574500 chr2D 88.500 600 53 10 2694 3281 621978403 621978998 0.000000e+00 712.0
4 TraesCS2B01G574500 chr2D 94.460 361 15 4 1 357 621972435 621972794 4.790000e-153 551.0
5 TraesCS2B01G574500 chr2D 87.062 371 33 13 490 854 621972792 621973153 3.950000e-109 405.0
6 TraesCS2B01G574500 chr2D 97.778 45 1 0 1149 1193 621979708 621979664 9.770000e-11 78.7
7 TraesCS2B01G574500 chr2A 88.010 1543 132 20 1473 2979 753704353 753705878 0.000000e+00 1775.0
8 TraesCS2B01G574500 chr2A 87.265 1225 114 25 275 1485 753703132 753704328 0.000000e+00 1360.0
9 TraesCS2B01G574500 chr2A 92.708 288 16 1 1 283 753699159 753699446 8.480000e-111 411.0
10 TraesCS2B01G574500 chr1B 88.889 108 9 1 2721 2828 160185045 160185149 2.660000e-26 130.0
11 TraesCS2B01G574500 chr1B 88.182 110 9 2 2724 2829 172613423 172613314 9.570000e-26 128.0
12 TraesCS2B01G574500 chr7B 88.182 110 9 2 2721 2829 231199778 231199884 9.570000e-26 128.0
13 TraesCS2B01G574500 chr3D 88.785 107 8 2 2724 2829 460120912 460120809 9.570000e-26 128.0
14 TraesCS2B01G574500 chr1A 88.785 107 8 2 2724 2829 253810298 253810195 9.570000e-26 128.0
15 TraesCS2B01G574500 chr5B 89.320 103 8 1 2724 2826 472938041 472937942 3.440000e-25 126.0
16 TraesCS2B01G574500 chr6D 87.850 107 9 2 2724 2829 168723250 168723147 4.450000e-24 122.0
17 TraesCS2B01G574500 chr6A 87.273 110 10 2 2721 2829 56622486 56622592 4.450000e-24 122.0
18 TraesCS2B01G574500 chr6A 87.273 110 10 2 2721 2829 118717163 118717269 4.450000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G574500 chr2B 763876419 763879703 3284 False 6067.0 6067 100.000000 1 3285 1 chr2B.!!$F1 3284
1 TraesCS2B01G574500 chr2D 621972435 621978998 6563 False 1058.5 2566 90.298500 1 3281 4 chr2D.!!$F1 3280
2 TraesCS2B01G574500 chr2A 753699159 753705878 6719 False 1182.0 1775 89.327667 1 2979 3 chr2A.!!$F1 2978

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
860 8042 0.037697 TTTGACCCTCGTGTCCATCG 60.038 55.0 0.0 0.0 34.25 3.84 F
1390 8582 0.107643 TCTCACCATCAACCGCACAA 59.892 50.0 0.0 0.0 0.00 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1835 9067 0.109319 ATGGCAAAATCGACCAACGC 60.109 50.0 0.0 0.0 42.26 4.84 R
2325 9564 0.685097 ATGACTAACACAGGGCACGT 59.315 50.0 0.0 0.0 0.00 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 107 0.815734 CTCCTTCAAGCTGCCATTGG 59.184 55.000 0.00 0.00 0.00 3.16
140 148 1.187567 AACCCAAGCTGCCATTGGTC 61.188 55.000 16.56 0.00 44.81 4.02
145 153 0.537143 AAGCTGCCATTGGTCGTTGA 60.537 50.000 4.26 0.00 0.00 3.18
224 232 0.326618 AGGGGTCCTACCTGTGGATG 60.327 60.000 0.00 0.00 38.64 3.51
241 249 8.199449 CCTGTGGATGCTTGTGATATTTTAAAT 58.801 33.333 0.00 0.00 0.00 1.40
325 4027 8.990722 TTTCAAATTCGATCTTTTTGCAAATG 57.009 26.923 13.65 9.36 31.88 2.32
326 4028 7.943413 TCAAATTCGATCTTTTTGCAAATGA 57.057 28.000 13.65 14.37 31.88 2.57
327 4029 8.537049 TCAAATTCGATCTTTTTGCAAATGAT 57.463 26.923 20.84 20.84 31.88 2.45
384 4086 9.674208 CAATCCGAAAACATTATTCAAAATTCG 57.326 29.630 0.00 0.00 38.41 3.34
443 4147 8.682128 TCTACCAACATTTTTATCAAATTCGC 57.318 30.769 0.00 0.00 0.00 4.70
447 4151 8.067189 ACCAACATTTTTATCAAATTCGCAAAC 58.933 29.630 0.00 0.00 0.00 2.93
448 4152 8.066595 CCAACATTTTTATCAAATTCGCAAACA 58.933 29.630 0.00 0.00 0.00 2.83
468 4172 8.945930 GCAAACATTTTTGTATTTGTGAACATG 58.054 29.630 6.23 0.00 43.62 3.21
495 4199 5.921004 GCAAATGCATGACCACTTTTTAA 57.079 34.783 0.00 0.00 41.59 1.52
496 4200 6.297694 GCAAATGCATGACCACTTTTTAAA 57.702 33.333 0.00 0.00 41.59 1.52
497 4201 6.723282 GCAAATGCATGACCACTTTTTAAAA 58.277 32.000 0.00 0.00 41.59 1.52
498 4202 7.361894 GCAAATGCATGACCACTTTTTAAAAT 58.638 30.769 0.00 0.00 41.59 1.82
499 4203 7.861872 GCAAATGCATGACCACTTTTTAAAATT 59.138 29.630 0.00 0.00 41.59 1.82
500 4204 9.733219 CAAATGCATGACCACTTTTTAAAATTT 57.267 25.926 0.00 0.00 0.00 1.82
501 4205 9.733219 AAATGCATGACCACTTTTTAAAATTTG 57.267 25.926 0.00 2.28 0.00 2.32
502 4206 7.256756 TGCATGACCACTTTTTAAAATTTGG 57.743 32.000 19.69 19.69 0.00 3.28
503 4207 7.050377 TGCATGACCACTTTTTAAAATTTGGA 58.950 30.769 24.85 11.37 0.00 3.53
504 4208 7.718753 TGCATGACCACTTTTTAAAATTTGGAT 59.281 29.630 24.85 14.42 0.00 3.41
576 4300 8.700051 TCCAAGGACATTGTTTATTCTTCAAAA 58.300 29.630 0.00 0.00 37.17 2.44
723 4450 0.676466 TACCGATGCTTGGTTGGCTG 60.676 55.000 0.52 0.00 40.96 4.85
724 4451 2.703798 CCGATGCTTGGTTGGCTGG 61.704 63.158 0.00 0.00 0.00 4.85
726 4453 1.243342 CGATGCTTGGTTGGCTGGAA 61.243 55.000 0.00 0.00 0.00 3.53
744 4471 0.250901 AATTTGCTCGCACCTGTCCT 60.251 50.000 0.00 0.00 0.00 3.85
758 4485 3.260380 ACCTGTCCTGAGTCATTCAAGAG 59.740 47.826 0.00 0.00 34.81 2.85
766 4493 2.989840 GAGTCATTCAAGAGACCGTGTG 59.010 50.000 0.00 0.00 35.38 3.82
770 4497 2.455674 TTCAAGAGACCGTGTGGATG 57.544 50.000 0.00 0.00 39.21 3.51
775 4502 1.639298 GAGACCGTGTGGATGCTTGC 61.639 60.000 0.00 0.00 39.21 4.01
837 8019 1.915141 AGGTTCATTGACCAGCCAAG 58.085 50.000 7.66 0.00 42.35 3.61
855 8037 1.523758 AGCAATTTGACCCTCGTGTC 58.476 50.000 0.00 0.00 35.77 3.67
856 8038 0.521735 GCAATTTGACCCTCGTGTCC 59.478 55.000 0.00 0.00 34.25 4.02
857 8039 1.890876 CAATTTGACCCTCGTGTCCA 58.109 50.000 0.00 0.00 34.25 4.02
858 8040 2.436417 CAATTTGACCCTCGTGTCCAT 58.564 47.619 0.00 0.00 34.25 3.41
859 8041 2.403252 ATTTGACCCTCGTGTCCATC 57.597 50.000 0.00 0.00 34.25 3.51
860 8042 0.037697 TTTGACCCTCGTGTCCATCG 60.038 55.000 0.00 0.00 34.25 3.84
873 8060 1.734465 GTCCATCGTCCTTTTGCTCTG 59.266 52.381 0.00 0.00 0.00 3.35
874 8061 0.449388 CCATCGTCCTTTTGCTCTGC 59.551 55.000 0.00 0.00 0.00 4.26
919 8106 8.768501 ACATATACACACTTCTCCTTCTATCA 57.231 34.615 0.00 0.00 0.00 2.15
923 8110 5.983540 ACACACTTCTCCTTCTATCAATCC 58.016 41.667 0.00 0.00 0.00 3.01
938 8125 4.826274 TCAATCCAACAAACAACCCAAA 57.174 36.364 0.00 0.00 0.00 3.28
941 8128 4.835284 ATCCAACAAACAACCCAAAACT 57.165 36.364 0.00 0.00 0.00 2.66
1029 8217 1.517242 GAGACAACCTCAAGCTGGTG 58.483 55.000 0.00 0.00 41.58 4.17
1134 8322 1.296715 GGAGCAAGGCCTCGAGAAA 59.703 57.895 15.71 0.00 32.57 2.52
1143 8331 0.881796 GCCTCGAGAAAAACAAGGGG 59.118 55.000 15.71 0.00 0.00 4.79
1208 8396 1.223487 GCAAGCCTATCCGTGGGAA 59.777 57.895 0.00 0.00 34.34 3.97
1236 8424 5.712152 TGAGCATGATACAGTACATCGAT 57.288 39.130 0.00 0.00 0.00 3.59
1247 8435 1.067212 GTACATCGATGAGGCCTTCGT 59.933 52.381 31.33 10.99 39.86 3.85
1272 8460 3.756783 AGTCCCTCCCTCCTCCCG 61.757 72.222 0.00 0.00 0.00 5.14
1335 8523 7.030075 TGACTTTATCGATGACACGGTATTA 57.970 36.000 8.54 0.00 0.00 0.98
1341 8529 5.441709 TCGATGACACGGTATTATGCTAA 57.558 39.130 0.00 0.00 0.00 3.09
1346 8534 7.530525 CGATGACACGGTATTATGCTAATTTTG 59.469 37.037 0.00 0.00 0.00 2.44
1350 8538 7.916552 ACACGGTATTATGCTAATTTTGAGAC 58.083 34.615 0.00 0.00 0.00 3.36
1390 8582 0.107643 TCTCACCATCAACCGCACAA 59.892 50.000 0.00 0.00 0.00 3.33
1393 8585 0.238289 CACCATCAACCGCACAAGAC 59.762 55.000 0.00 0.00 0.00 3.01
1435 8627 7.116376 ACGCATGATCGATCGACTTTAATTAAT 59.884 33.333 22.06 0.00 0.00 1.40
1446 8638 7.878608 TCGACTTTAATTAATTTCGTCGTCTC 58.121 34.615 27.03 8.58 42.17 3.36
1448 8640 7.201376 CGACTTTAATTAATTTCGTCGTCTCCA 60.201 37.037 23.71 0.00 38.26 3.86
1525 8757 0.401738 ACCCTGTGTATGTGCAGCTT 59.598 50.000 0.00 0.00 0.00 3.74
1542 8774 0.806868 CTTGTGAAGGCGATGCACAT 59.193 50.000 2.42 0.00 41.60 3.21
1639 8871 4.154347 GCCCTGGGAGAGTGCTCG 62.154 72.222 19.27 0.00 42.25 5.03
1642 8874 1.333636 CCCTGGGAGAGTGCTCGAAT 61.334 60.000 7.01 0.00 42.25 3.34
1662 8894 0.961753 CCCTTCTTTGGAGGCAACAC 59.038 55.000 0.00 0.00 41.41 3.32
1682 8914 3.031013 ACTGTCGGATATGTGGATGTCA 58.969 45.455 0.00 0.00 0.00 3.58
1684 8916 4.832823 ACTGTCGGATATGTGGATGTCATA 59.167 41.667 0.00 0.00 33.26 2.15
1753 8985 0.824595 TCAAGACCTTCGACGACCCA 60.825 55.000 0.00 0.00 0.00 4.51
1754 8986 0.246635 CAAGACCTTCGACGACCCAT 59.753 55.000 0.00 0.00 0.00 4.00
1759 8991 0.530650 CCTTCGACGACCCATCCATG 60.531 60.000 0.00 0.00 0.00 3.66
1774 9006 2.441164 ATGACGCCTCTCCTCGCT 60.441 61.111 0.00 0.00 0.00 4.93
1793 9025 2.159382 CTATGTGGGCAGACCGTTTTT 58.841 47.619 0.00 0.00 44.64 1.94
1794 9026 0.958822 ATGTGGGCAGACCGTTTTTC 59.041 50.000 0.00 0.00 44.64 2.29
1806 9038 3.013921 ACCGTTTTTCTGCACTGAAAGA 58.986 40.909 1.91 0.00 37.27 2.52
1812 9044 3.845781 TTCTGCACTGAAAGAAGTCCT 57.154 42.857 0.00 0.00 37.43 3.85
1813 9045 3.117491 TCTGCACTGAAAGAAGTCCTG 57.883 47.619 0.00 0.00 37.43 3.86
1838 9070 3.321648 TGCCAGATGTGGGAGCGT 61.322 61.111 11.47 0.00 45.17 5.07
1858 9090 0.611618 TGGTCGATTTTGCCATGCCT 60.612 50.000 0.00 0.00 0.00 4.75
1860 9092 1.065551 GGTCGATTTTGCCATGCCTAC 59.934 52.381 0.00 0.00 0.00 3.18
1863 9095 1.268032 CGATTTTGCCATGCCTACGAC 60.268 52.381 0.00 0.00 0.00 4.34
1864 9096 1.742831 GATTTTGCCATGCCTACGACA 59.257 47.619 0.00 0.00 0.00 4.35
1866 9098 1.093972 TTTGCCATGCCTACGACATG 58.906 50.000 0.00 0.00 43.67 3.21
1867 9099 0.035534 TTGCCATGCCTACGACATGT 60.036 50.000 0.00 0.00 42.74 3.21
1874 9106 1.153842 CCTACGACATGTGCTCGCA 60.154 57.895 1.15 0.00 34.34 5.10
1884 9123 4.074526 TGCTCGCAGCTCTGGTCC 62.075 66.667 9.12 0.00 42.97 4.46
1887 9126 1.220206 CTCGCAGCTCTGGTCCATT 59.780 57.895 0.00 0.00 0.00 3.16
1892 9131 2.233566 AGCTCTGGTCCATTGGGCA 61.234 57.895 9.97 0.00 0.00 5.36
1896 9135 2.440065 TGGTCCATTGGGCATCGC 60.440 61.111 9.97 0.00 0.00 4.58
1910 9149 3.527533 GGCATCGCCGTTTCCATATATA 58.472 45.455 0.00 0.00 39.62 0.86
1912 9151 4.024893 GGCATCGCCGTTTCCATATATATG 60.025 45.833 14.78 14.78 39.62 1.78
1913 9152 4.808895 GCATCGCCGTTTCCATATATATGA 59.191 41.667 21.97 7.38 35.75 2.15
1917 9156 5.815222 TCGCCGTTTCCATATATATGATTGG 59.185 40.000 21.97 15.94 35.75 3.16
2021 9260 0.756294 TTCTCGCCTTCACTGGTTGA 59.244 50.000 0.00 0.00 0.00 3.18
2045 9284 2.104111 CCAGGAGCATTACCGTATTGGA 59.896 50.000 3.31 0.00 42.00 3.53
2066 9305 1.745653 GTTGCTATGTCCTTGAAGGCC 59.254 52.381 6.30 0.00 34.61 5.19
2081 9320 2.741092 GCCTGGACTTCGTGACCA 59.259 61.111 0.00 0.00 38.12 4.02
2107 9346 0.394938 TGCCCACGCTGTTTCTTCTA 59.605 50.000 0.00 0.00 35.36 2.10
2142 9381 5.938125 TGAAAGGTTTCAAGAGTAGTATGGC 59.062 40.000 2.59 0.00 43.62 4.40
2157 9396 4.052518 GGCCAGGGTGCTGGTGAT 62.053 66.667 0.00 0.00 45.87 3.06
2177 9416 0.531200 GGGAGTCCCTGTGTTAGTCG 59.469 60.000 22.04 0.00 41.34 4.18
2188 9427 3.904571 TGTGTTAGTCGTCACATGGTAC 58.095 45.455 0.00 0.00 39.23 3.34
2252 9491 7.686438 AACATTACTACAACATTGATGAGCA 57.314 32.000 0.43 0.00 0.00 4.26
2253 9492 7.870509 ACATTACTACAACATTGATGAGCAT 57.129 32.000 0.43 0.00 0.00 3.79
2301 9540 8.857694 ACCGAATAACTTCAAATAAAGAGGAA 57.142 30.769 0.00 0.00 0.00 3.36
2325 9564 2.027653 TGGCGACACATAACAGGATTGA 60.028 45.455 0.00 0.00 33.40 2.57
2328 9567 3.250744 CGACACATAACAGGATTGACGT 58.749 45.455 0.00 0.00 0.00 4.34
2486 9733 7.234166 AGGTGAAATTGTCCAGAAAGATGAAAT 59.766 33.333 0.00 0.00 0.00 2.17
2534 9781 1.204146 ATAACGGTCATGAGGTGGCT 58.796 50.000 0.00 0.00 31.47 4.75
2582 9832 4.850680 AGACCGAAAATGCCTTGGTTATA 58.149 39.130 0.00 0.00 31.86 0.98
2588 9842 7.138736 CCGAAAATGCCTTGGTTATATTACAG 58.861 38.462 0.00 0.00 0.00 2.74
2641 9897 3.577415 TGATGATCTGGATGTGCTCCTAG 59.423 47.826 0.00 0.00 45.21 3.02
2644 9900 4.546674 TGATCTGGATGTGCTCCTAGTAA 58.453 43.478 0.00 0.00 45.21 2.24
2659 9915 8.244113 TGCTCCTAGTAACATATATTCATCACG 58.756 37.037 0.00 0.00 0.00 4.35
2663 9919 9.129209 CCTAGTAACATATATTCATCACGTGTG 57.871 37.037 16.51 13.05 0.00 3.82
2664 9920 9.893305 CTAGTAACATATATTCATCACGTGTGA 57.107 33.333 16.51 15.15 44.59 3.58
2666 9922 7.867909 AGTAACATATATTCATCACGTGTGAGG 59.132 37.037 16.51 8.27 43.61 3.86
2667 9923 5.541845 ACATATATTCATCACGTGTGAGGG 58.458 41.667 16.51 6.49 43.61 4.30
2668 9924 2.309528 TATTCATCACGTGTGAGGGC 57.690 50.000 16.51 0.00 43.61 5.19
2669 9925 0.392998 ATTCATCACGTGTGAGGGCC 60.393 55.000 16.51 0.00 43.61 5.80
2670 9926 1.480212 TTCATCACGTGTGAGGGCCT 61.480 55.000 16.51 5.25 43.61 5.19
2672 9928 1.913262 ATCACGTGTGAGGGCCTGA 60.913 57.895 12.95 0.00 43.61 3.86
2673 9929 1.480212 ATCACGTGTGAGGGCCTGAA 61.480 55.000 12.95 0.00 43.61 3.02
2675 9931 1.021390 CACGTGTGAGGGCCTGAATC 61.021 60.000 12.95 0.00 0.00 2.52
2676 9932 1.194781 ACGTGTGAGGGCCTGAATCT 61.195 55.000 12.95 0.00 0.00 2.40
2677 9933 0.036010 CGTGTGAGGGCCTGAATCTT 60.036 55.000 12.95 0.00 0.00 2.40
2678 9934 1.457346 GTGTGAGGGCCTGAATCTTG 58.543 55.000 12.95 0.00 0.00 3.02
2679 9935 1.003580 GTGTGAGGGCCTGAATCTTGA 59.996 52.381 12.95 0.00 0.00 3.02
2680 9936 1.704628 TGTGAGGGCCTGAATCTTGAA 59.295 47.619 12.95 0.00 0.00 2.69
2681 9937 2.290514 TGTGAGGGCCTGAATCTTGAAG 60.291 50.000 12.95 0.00 0.00 3.02
2682 9938 2.026822 GTGAGGGCCTGAATCTTGAAGA 60.027 50.000 12.95 0.00 0.00 2.87
2683 9939 2.238144 TGAGGGCCTGAATCTTGAAGAG 59.762 50.000 12.95 0.00 0.00 2.85
2684 9940 2.503356 GAGGGCCTGAATCTTGAAGAGA 59.497 50.000 12.95 0.00 39.13 3.10
2685 9941 2.915604 AGGGCCTGAATCTTGAAGAGAA 59.084 45.455 4.50 0.00 38.06 2.87
2686 9942 3.331889 AGGGCCTGAATCTTGAAGAGAAA 59.668 43.478 4.50 0.00 38.06 2.52
2687 9943 4.082125 GGGCCTGAATCTTGAAGAGAAAA 58.918 43.478 0.84 0.00 38.06 2.29
2688 9944 4.157472 GGGCCTGAATCTTGAAGAGAAAAG 59.843 45.833 0.84 0.00 38.06 2.27
2689 9945 4.157472 GGCCTGAATCTTGAAGAGAAAAGG 59.843 45.833 0.00 6.37 38.06 3.11
2690 9946 4.157472 GCCTGAATCTTGAAGAGAAAAGGG 59.843 45.833 14.14 7.39 38.06 3.95
2691 9947 5.320277 CCTGAATCTTGAAGAGAAAAGGGT 58.680 41.667 0.00 0.00 38.06 4.34
2692 9948 6.476378 CCTGAATCTTGAAGAGAAAAGGGTA 58.524 40.000 0.00 0.00 38.06 3.69
2695 9951 6.710744 TGAATCTTGAAGAGAAAAGGGTACAC 59.289 38.462 0.00 0.00 38.06 2.90
2708 9964 9.088987 AGAAAAGGGTACACAAAAATCATACAT 57.911 29.630 0.00 0.00 0.00 2.29
2736 9994 4.129380 TGGCATTCCTGAAATGATACTCG 58.871 43.478 2.07 0.00 46.54 4.18
2750 10008 4.200874 TGATACTCGACCCTCTCTTTCTC 58.799 47.826 0.00 0.00 0.00 2.87
2766 10024 9.372369 CTCTCTTTCTCCATTTAATTCTACGTT 57.628 33.333 0.00 0.00 0.00 3.99
2770 10028 9.158233 CTTTCTCCATTTAATTCTACGTTACCA 57.842 33.333 0.00 0.00 0.00 3.25
2834 10092 6.971726 ATGATACTCCCATTAGACGTAACA 57.028 37.500 0.00 0.00 0.00 2.41
2864 10129 1.202758 CCATAGCCCGGCTAAATGTCA 60.203 52.381 23.02 0.16 44.62 3.58
2995 10265 9.487790 TTCATTTTCAGGTGTCAAAATATTTCC 57.512 29.630 0.10 0.00 32.18 3.13
2997 10267 5.993748 TTCAGGTGTCAAAATATTTCCCC 57.006 39.130 0.10 0.00 0.00 4.81
2999 10269 2.758423 AGGTGTCAAAATATTTCCCCGC 59.242 45.455 0.10 0.00 0.00 6.13
3068 10339 2.338577 AGGCAATAGTGACATCCAGC 57.661 50.000 0.00 0.00 33.83 4.85
3097 10368 1.457346 GAAGTGCCATCCTTCCTGTG 58.543 55.000 0.00 0.00 33.70 3.66
3110 10381 1.644509 TCCTGTGTGTGTATCCTGCT 58.355 50.000 0.00 0.00 0.00 4.24
3112 10383 2.496070 TCCTGTGTGTGTATCCTGCTAC 59.504 50.000 0.00 0.00 0.00 3.58
3113 10384 2.497675 CCTGTGTGTGTATCCTGCTACT 59.502 50.000 0.00 0.00 0.00 2.57
3120 10391 5.833131 TGTGTGTATCCTGCTACTCATGATA 59.167 40.000 0.00 0.00 33.14 2.15
3156 10427 6.385649 TTTTATTCAAGTGACCCTCAACAC 57.614 37.500 0.00 0.00 37.30 3.32
3162 10433 0.531974 GTGACCCTCAACACGCTGAA 60.532 55.000 0.00 0.00 0.00 3.02
3165 10436 1.071471 CCCTCAACACGCTGAAGGT 59.929 57.895 0.00 0.00 0.00 3.50
3173 10444 1.675641 ACGCTGAAGGTGAATGGCC 60.676 57.895 0.00 0.00 0.00 5.36
3213 10484 1.954927 GCCTCACAGTGGCTAATACC 58.045 55.000 0.00 0.00 46.38 2.73
3214 10485 1.806623 GCCTCACAGTGGCTAATACCG 60.807 57.143 0.00 0.00 46.38 4.02
3230 10501 1.526917 CCGGACAATCCCATGAGCC 60.527 63.158 0.00 0.00 31.13 4.70
3244 10515 1.878522 GAGCCGCAGTATGACCACG 60.879 63.158 0.00 0.00 39.69 4.94
3251 10522 2.415168 CGCAGTATGACCACGTTTCATT 59.585 45.455 13.33 0.00 39.69 2.57
3260 10531 2.032030 ACCACGTTTCATTGAAAGAGCG 60.032 45.455 12.02 13.86 31.87 5.03
3261 10532 1.971962 CACGTTTCATTGAAAGAGCGC 59.028 47.619 12.02 0.00 31.87 5.92
3267 10538 1.070821 CATTGAAAGAGCGCAGACGA 58.929 50.000 11.47 0.00 43.93 4.20
3271 10542 1.526887 TGAAAGAGCGCAGACGAAAAG 59.473 47.619 11.47 0.00 43.93 2.27
3273 10544 1.865865 AAGAGCGCAGACGAAAAGAA 58.134 45.000 11.47 0.00 43.93 2.52
3274 10545 1.140816 AGAGCGCAGACGAAAAGAAC 58.859 50.000 11.47 0.00 43.93 3.01
3276 10547 1.260561 GAGCGCAGACGAAAAGAACAA 59.739 47.619 11.47 0.00 43.93 2.83
3277 10548 1.003866 AGCGCAGACGAAAAGAACAAC 60.004 47.619 11.47 0.00 43.93 3.32
3278 10549 1.267832 GCGCAGACGAAAAGAACAACA 60.268 47.619 0.30 0.00 43.93 3.33
3279 10550 2.602217 GCGCAGACGAAAAGAACAACAT 60.602 45.455 0.30 0.00 43.93 2.71
3280 10551 3.363575 GCGCAGACGAAAAGAACAACATA 60.364 43.478 0.30 0.00 43.93 2.29
3281 10552 4.141680 CGCAGACGAAAAGAACAACATAC 58.858 43.478 0.00 0.00 43.93 2.39
3282 10553 4.318475 CGCAGACGAAAAGAACAACATACA 60.318 41.667 0.00 0.00 43.93 2.29
3283 10554 5.140177 GCAGACGAAAAGAACAACATACAG 58.860 41.667 0.00 0.00 0.00 2.74
3284 10555 5.277345 GCAGACGAAAAGAACAACATACAGT 60.277 40.000 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 1.902508 AGGTGATGAAGAGCGGAAAGA 59.097 47.619 0.00 0.00 0.00 2.52
140 148 5.982516 CCCTGAAGAAATCTATCTCTCAACG 59.017 44.000 0.00 0.00 0.00 4.10
145 153 4.302067 TGGCCCTGAAGAAATCTATCTCT 58.698 43.478 0.00 0.00 0.00 3.10
252 260 9.553064 TTAATTCAATCTCAAAGAGGAGCTATC 57.447 33.333 0.00 0.00 34.84 2.08
302 4004 7.943413 TCATTTGCAAAAAGATCGAATTTGA 57.057 28.000 17.19 7.73 36.41 2.69
313 4015 9.724839 AGAAATTGTTCAATCATTTGCAAAAAG 57.275 25.926 17.19 12.03 36.09 2.27
357 4059 9.476761 GAATTTTGAATAATGTTTTCGGATTGC 57.523 29.630 0.00 0.00 0.00 3.56
358 4060 9.674208 CGAATTTTGAATAATGTTTTCGGATTG 57.326 29.630 0.00 0.00 0.00 2.67
448 4152 9.500864 GCAAAACATGTTCACAAATACAAAAAT 57.499 25.926 12.39 0.00 0.00 1.82
509 4213 8.472683 AATTTGAAAAGTGTTCACGATTTGAA 57.527 26.923 0.00 8.69 42.26 2.69
546 4270 9.358872 GAAGAATAAACAATGTCCTTGGATTTC 57.641 33.333 0.00 0.00 39.30 2.17
682 4409 3.161067 TGCCGATCAAGGGATTCAAAAA 58.839 40.909 0.00 0.00 32.67 1.94
723 4450 0.169009 GACAGGTGCGAGCAAATTCC 59.831 55.000 0.00 0.00 0.00 3.01
724 4451 0.169009 GGACAGGTGCGAGCAAATTC 59.831 55.000 0.00 0.00 0.00 2.17
726 4453 0.957395 CAGGACAGGTGCGAGCAAAT 60.957 55.000 0.00 0.00 0.00 2.32
744 4471 2.628178 ACACGGTCTCTTGAATGACTCA 59.372 45.455 0.00 0.00 34.01 3.41
758 4485 2.690778 GGCAAGCATCCACACGGTC 61.691 63.158 0.00 0.00 0.00 4.79
766 4493 1.344114 TGGAAAAGTTGGCAAGCATCC 59.656 47.619 0.00 7.23 0.00 3.51
770 4497 1.599071 GCTTTGGAAAAGTTGGCAAGC 59.401 47.619 0.00 0.00 0.00 4.01
775 4502 3.708563 TCTTCGCTTTGGAAAAGTTGG 57.291 42.857 2.01 0.00 0.00 3.77
837 8019 0.521735 GGACACGAGGGTCAAATTGC 59.478 55.000 7.84 0.00 39.59 3.56
855 8037 0.449388 GCAGAGCAAAAGGACGATGG 59.551 55.000 0.00 0.00 0.00 3.51
856 8038 1.396301 GAGCAGAGCAAAAGGACGATG 59.604 52.381 0.00 0.00 0.00 3.84
857 8039 1.731720 GAGCAGAGCAAAAGGACGAT 58.268 50.000 0.00 0.00 0.00 3.73
858 8040 0.667487 CGAGCAGAGCAAAAGGACGA 60.667 55.000 0.00 0.00 0.00 4.20
859 8041 0.667487 TCGAGCAGAGCAAAAGGACG 60.667 55.000 0.00 0.00 0.00 4.79
860 8042 0.793250 GTCGAGCAGAGCAAAAGGAC 59.207 55.000 0.00 0.00 0.00 3.85
873 8060 4.869297 TGTAGAGTTGTAGACTAGTCGAGC 59.131 45.833 17.07 11.44 39.19 5.03
874 8061 8.821147 ATATGTAGAGTTGTAGACTAGTCGAG 57.179 38.462 17.07 0.00 39.19 4.04
917 8104 4.826274 TTTGGGTTGTTTGTTGGATTGA 57.174 36.364 0.00 0.00 0.00 2.57
919 8106 5.172687 AGTTTTGGGTTGTTTGTTGGATT 57.827 34.783 0.00 0.00 0.00 3.01
923 8110 6.128418 CCTTGTTAGTTTTGGGTTGTTTGTTG 60.128 38.462 0.00 0.00 0.00 3.33
977 8165 4.998671 TGGATCAACTCAAACTTTGCAA 57.001 36.364 0.00 0.00 0.00 4.08
996 8184 1.452108 GTCTCCTCCGGCCATTTGG 60.452 63.158 2.24 0.00 38.53 3.28
997 8185 0.322456 TTGTCTCCTCCGGCCATTTG 60.322 55.000 2.24 0.00 0.00 2.32
1020 8208 2.642254 CCACATGCCCACCAGCTTG 61.642 63.158 0.00 0.00 42.10 4.01
1129 8317 1.889170 CTGCTCCCCCTTGTTTTTCTC 59.111 52.381 0.00 0.00 0.00 2.87
1134 8322 1.228675 CAGCTGCTCCCCCTTGTTT 60.229 57.895 0.00 0.00 0.00 2.83
1208 8396 3.876274 ACTGTATCATGCTCAACGACT 57.124 42.857 0.00 0.00 0.00 4.18
1293 8481 1.091771 CAGCCCAGTAACGAGCCATG 61.092 60.000 0.00 0.00 0.00 3.66
1335 8523 7.383102 AGTTCAATCGTCTCAAAATTAGCAT 57.617 32.000 0.00 0.00 0.00 3.79
1369 8561 1.003839 TGCGGTTGATGGTGAGACC 60.004 57.895 0.00 0.00 39.22 3.85
1376 8568 1.197721 GAAGTCTTGTGCGGTTGATGG 59.802 52.381 0.00 0.00 0.00 3.51
1390 8582 4.814234 TGCGTGTAGAATGTTTTGAAGTCT 59.186 37.500 0.00 0.00 0.00 3.24
1393 8585 5.688823 TCATGCGTGTAGAATGTTTTGAAG 58.311 37.500 5.68 0.00 37.18 3.02
1435 8627 3.520290 AAGCATATGGAGACGACGAAA 57.480 42.857 0.00 0.00 0.00 3.46
1525 8757 1.307355 CCATGTGCATCGCCTTCACA 61.307 55.000 0.00 0.00 43.72 3.58
1624 8856 0.103937 GATTCGAGCACTCTCCCAGG 59.896 60.000 0.00 0.00 35.94 4.45
1628 8860 0.827368 AAGGGATTCGAGCACTCTCC 59.173 55.000 0.00 0.00 35.94 3.71
1639 8871 2.493675 GTTGCCTCCAAAGAAGGGATTC 59.506 50.000 0.00 0.00 33.04 2.52
1642 8874 0.850100 TGTTGCCTCCAAAGAAGGGA 59.150 50.000 0.00 0.00 31.68 4.20
1662 8894 3.733443 TGACATCCACATATCCGACAG 57.267 47.619 0.00 0.00 0.00 3.51
1682 8914 1.831736 CCCAAGAAGACCACCGAGTAT 59.168 52.381 0.00 0.00 0.00 2.12
1684 8916 0.763223 ACCCAAGAAGACCACCGAGT 60.763 55.000 0.00 0.00 0.00 4.18
1713 8945 2.507102 CTTGCATCGCGTCGGTCT 60.507 61.111 5.77 0.00 0.00 3.85
1753 8985 1.459455 CGAGGAGAGGCGTCATGGAT 61.459 60.000 9.41 0.00 0.00 3.41
1754 8986 2.121538 CGAGGAGAGGCGTCATGGA 61.122 63.158 9.41 0.00 0.00 3.41
1759 8991 1.284408 CATAGCGAGGAGAGGCGTC 59.716 63.158 0.00 0.00 0.00 5.19
1774 9006 2.156098 GAAAAACGGTCTGCCCACATA 58.844 47.619 0.00 0.00 0.00 2.29
1793 9025 2.224378 CCAGGACTTCTTTCAGTGCAGA 60.224 50.000 0.00 0.00 37.58 4.26
1794 9026 2.149578 CCAGGACTTCTTTCAGTGCAG 58.850 52.381 0.00 0.00 37.58 4.41
1806 9038 1.380302 GGCATGACCACCAGGACTT 59.620 57.895 0.00 0.00 38.86 3.01
1812 9044 0.322726 CACATCTGGCATGACCACCA 60.323 55.000 0.00 0.00 46.36 4.17
1813 9045 1.033746 CCACATCTGGCATGACCACC 61.034 60.000 0.00 0.00 46.36 4.61
1828 9060 2.107041 AATCGACCAACGCTCCCACA 62.107 55.000 0.00 0.00 42.26 4.17
1835 9067 0.109319 ATGGCAAAATCGACCAACGC 60.109 50.000 0.00 0.00 42.26 4.84
1838 9070 0.246086 GGCATGGCAAAATCGACCAA 59.754 50.000 15.47 0.00 36.94 3.67
1858 9090 1.805539 GCTGCGAGCACATGTCGTA 60.806 57.895 0.00 0.00 41.89 3.43
1860 9092 2.796425 GAGCTGCGAGCACATGTCG 61.796 63.158 0.00 0.00 45.56 4.35
1863 9095 2.461945 CCAGAGCTGCGAGCACATG 61.462 63.158 10.16 0.00 45.56 3.21
1864 9096 2.125229 CCAGAGCTGCGAGCACAT 60.125 61.111 10.16 0.00 45.56 3.21
1866 9098 2.813042 GACCAGAGCTGCGAGCAC 60.813 66.667 10.16 4.60 45.56 4.40
1867 9099 4.074526 GGACCAGAGCTGCGAGCA 62.075 66.667 10.16 0.00 45.56 4.26
1874 9106 1.578215 ATGCCCAATGGACCAGAGCT 61.578 55.000 0.00 0.00 0.00 4.09
1892 9131 6.483307 CCAATCATATATATGGAAACGGCGAT 59.517 38.462 16.62 0.00 34.82 4.58
1896 9135 6.423182 ACCCCAATCATATATATGGAAACGG 58.577 40.000 20.18 16.16 34.82 4.44
1902 9141 7.284034 GCAGAAGAACCCCAATCATATATATGG 59.716 40.741 20.18 7.83 34.50 2.74
1904 9143 7.932134 TGCAGAAGAACCCCAATCATATATAT 58.068 34.615 0.00 0.00 0.00 0.86
1910 9149 2.905415 TGCAGAAGAACCCCAATCAT 57.095 45.000 0.00 0.00 0.00 2.45
1912 9151 3.368739 CCATTTGCAGAAGAACCCCAATC 60.369 47.826 0.00 0.00 0.00 2.67
1913 9152 2.568509 CCATTTGCAGAAGAACCCCAAT 59.431 45.455 0.00 0.00 0.00 3.16
1917 9156 1.273327 CCACCATTTGCAGAAGAACCC 59.727 52.381 0.00 0.00 0.00 4.11
2021 9260 2.154567 TACGGTAATGCTCCTGGAGT 57.845 50.000 23.92 7.99 31.39 3.85
2045 9284 2.619074 GGCCTTCAAGGACATAGCAACT 60.619 50.000 7.98 0.00 45.15 3.16
2081 9320 0.324943 AACAGCGTGGGCATAGAACT 59.675 50.000 0.00 0.00 43.41 3.01
2083 9322 1.003118 AGAAACAGCGTGGGCATAGAA 59.997 47.619 0.00 0.00 43.41 2.10
2107 9346 7.936584 TCTTGAAACCTTTCACGAAAACATAT 58.063 30.769 4.86 0.00 45.99 1.78
2177 9416 5.046520 AGAGGGTAAGAAAGTACCATGTGAC 60.047 44.000 3.93 0.00 44.73 3.67
2188 9427 3.056035 ACGGCTTGTAGAGGGTAAGAAAG 60.056 47.826 0.00 0.00 0.00 2.62
2301 9540 4.623932 ATCCTGTTATGTGTCGCCATAT 57.376 40.909 0.00 0.00 0.00 1.78
2325 9564 0.685097 ATGACTAACACAGGGCACGT 59.315 50.000 0.00 0.00 0.00 4.49
2328 9567 6.491745 TCAAAATAAATGACTAACACAGGGCA 59.508 34.615 0.00 0.00 0.00 5.36
2358 9597 3.445857 TGACGATGTACACAACGAAACA 58.554 40.909 17.30 11.29 43.47 2.83
2371 9610 3.455327 CTCATCTCTGCATTGACGATGT 58.545 45.455 4.58 0.00 38.07 3.06
2458 9705 6.550854 TCATCTTTCTGGACAATTTCACCTTT 59.449 34.615 0.00 0.00 0.00 3.11
2486 9733 1.751351 GACACCACCAGATCTCGATGA 59.249 52.381 0.00 0.00 0.00 2.92
2534 9781 3.132289 AGTTCAACTCACTGACCGAAGAA 59.868 43.478 0.00 0.00 0.00 2.52
2582 9832 4.003648 CTCAGAGGCCGTTTTTCTGTAAT 58.996 43.478 16.21 0.00 39.41 1.89
2588 9842 1.157585 GGTCTCAGAGGCCGTTTTTC 58.842 55.000 4.97 0.00 25.77 2.29
2641 9897 7.116376 CCCTCACACGTGATGAATATATGTTAC 59.884 40.741 25.01 0.00 39.13 2.50
2644 9900 5.541845 CCCTCACACGTGATGAATATATGT 58.458 41.667 25.01 0.00 39.13 2.29
2659 9915 1.003580 TCAAGATTCAGGCCCTCACAC 59.996 52.381 0.00 0.00 0.00 3.82
2663 9919 2.503356 TCTCTTCAAGATTCAGGCCCTC 59.497 50.000 0.00 0.00 0.00 4.30
2664 9920 2.555664 TCTCTTCAAGATTCAGGCCCT 58.444 47.619 0.00 0.00 0.00 5.19
2666 9922 4.157472 CCTTTTCTCTTCAAGATTCAGGCC 59.843 45.833 0.00 0.00 32.82 5.19
2667 9923 4.157472 CCCTTTTCTCTTCAAGATTCAGGC 59.843 45.833 0.00 0.00 32.82 4.85
2668 9924 5.320277 ACCCTTTTCTCTTCAAGATTCAGG 58.680 41.667 0.00 0.00 32.82 3.86
2669 9925 6.936900 TGTACCCTTTTCTCTTCAAGATTCAG 59.063 38.462 0.00 0.00 32.82 3.02
2670 9926 6.710744 GTGTACCCTTTTCTCTTCAAGATTCA 59.289 38.462 0.00 0.00 32.82 2.57
2672 9928 6.601332 TGTGTACCCTTTTCTCTTCAAGATT 58.399 36.000 0.00 0.00 32.82 2.40
2673 9929 6.187727 TGTGTACCCTTTTCTCTTCAAGAT 57.812 37.500 0.00 0.00 32.82 2.40
2675 9931 6.693315 TTTGTGTACCCTTTTCTCTTCAAG 57.307 37.500 0.00 0.00 0.00 3.02
2676 9932 7.469537 TTTTTGTGTACCCTTTTCTCTTCAA 57.530 32.000 0.00 0.00 0.00 2.69
2677 9933 7.340743 TGATTTTTGTGTACCCTTTTCTCTTCA 59.659 33.333 0.00 0.00 0.00 3.02
2678 9934 7.712797 TGATTTTTGTGTACCCTTTTCTCTTC 58.287 34.615 0.00 0.00 0.00 2.87
2679 9935 7.654022 TGATTTTTGTGTACCCTTTTCTCTT 57.346 32.000 0.00 0.00 0.00 2.85
2680 9936 7.839680 ATGATTTTTGTGTACCCTTTTCTCT 57.160 32.000 0.00 0.00 0.00 3.10
2681 9937 8.573035 TGTATGATTTTTGTGTACCCTTTTCTC 58.427 33.333 0.00 0.00 0.00 2.87
2682 9938 8.472007 TGTATGATTTTTGTGTACCCTTTTCT 57.528 30.769 0.00 0.00 0.00 2.52
2683 9939 9.139174 CATGTATGATTTTTGTGTACCCTTTTC 57.861 33.333 0.00 0.00 0.00 2.29
2684 9940 8.646900 ACATGTATGATTTTTGTGTACCCTTTT 58.353 29.630 0.00 0.00 0.00 2.27
2685 9941 8.087750 CACATGTATGATTTTTGTGTACCCTTT 58.912 33.333 0.00 0.00 34.43 3.11
2686 9942 7.232534 ACACATGTATGATTTTTGTGTACCCTT 59.767 33.333 0.00 0.00 46.51 3.95
2687 9943 6.719370 ACACATGTATGATTTTTGTGTACCCT 59.281 34.615 0.00 0.00 46.51 4.34
2688 9944 6.919721 ACACATGTATGATTTTTGTGTACCC 58.080 36.000 0.00 0.00 46.51 3.69
2695 9951 6.782298 TGCCAAACACATGTATGATTTTTG 57.218 33.333 0.00 2.17 0.00 2.44
2708 9964 3.640498 TCATTTCAGGAATGCCAAACACA 59.360 39.130 0.00 0.00 43.93 3.72
2736 9994 7.342581 AGAATTAAATGGAGAAAGAGAGGGTC 58.657 38.462 0.00 0.00 0.00 4.46
2750 10008 8.203937 TGATGTGGTAACGTAGAATTAAATGG 57.796 34.615 0.00 0.00 42.51 3.16
2766 10024 5.184864 CCAACTAGGCAATTTTGATGTGGTA 59.815 40.000 0.00 0.00 0.00 3.25
2826 10084 6.531948 GGCTATGGATCAGATAATGTTACGTC 59.468 42.308 0.00 0.00 0.00 4.34
2828 10086 5.812642 GGGCTATGGATCAGATAATGTTACG 59.187 44.000 0.00 0.00 0.00 3.18
2834 10092 2.171448 GCCGGGCTATGGATCAGATAAT 59.829 50.000 12.87 0.00 0.00 1.28
2880 10145 3.450578 TGAAAGACACGCGAAAAGTAGT 58.549 40.909 15.93 0.00 0.00 2.73
2999 10269 1.425428 GAGAAATGTCGCTTGCCCG 59.575 57.895 0.00 0.00 0.00 6.13
3055 10326 4.646945 CCTAGAAAGAGCTGGATGTCACTA 59.353 45.833 0.00 0.00 0.00 2.74
3057 10328 3.449018 TCCTAGAAAGAGCTGGATGTCAC 59.551 47.826 0.00 0.00 0.00 3.67
3068 10339 3.454082 AGGATGGCACTTCCTAGAAAGAG 59.546 47.826 7.89 0.00 41.89 2.85
3094 10365 3.161866 TGAGTAGCAGGATACACACACA 58.838 45.455 0.00 0.00 41.41 3.72
3097 10368 4.655762 TCATGAGTAGCAGGATACACAC 57.344 45.455 0.00 0.00 41.41 3.82
3156 10427 2.409870 GGGCCATTCACCTTCAGCG 61.410 63.158 4.39 0.00 0.00 5.18
3162 10433 1.632589 GTTTTCTGGGCCATTCACCT 58.367 50.000 6.72 0.00 0.00 4.00
3165 10436 2.094100 TTGGTTTTCTGGGCCATTCA 57.906 45.000 6.72 0.00 31.71 2.57
3211 10482 1.224592 GCTCATGGGATTGTCCGGT 59.775 57.895 0.00 0.00 37.43 5.28
3213 10484 1.889105 CGGCTCATGGGATTGTCCG 60.889 63.158 0.00 0.00 37.43 4.79
3214 10485 2.189499 GCGGCTCATGGGATTGTCC 61.189 63.158 0.00 0.00 35.23 4.02
3230 10501 1.424403 TGAAACGTGGTCATACTGCG 58.576 50.000 0.00 0.00 0.00 5.18
3244 10515 3.229552 GTCTGCGCTCTTTCAATGAAAC 58.770 45.455 9.73 0.00 0.00 2.78
3251 10522 1.526887 CTTTTCGTCTGCGCTCTTTCA 59.473 47.619 9.73 0.00 38.14 2.69
3260 10531 5.090652 TGTATGTTGTTCTTTTCGTCTGC 57.909 39.130 0.00 0.00 0.00 4.26
3261 10532 6.287107 ACTGTATGTTGTTCTTTTCGTCTG 57.713 37.500 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.