Multiple sequence alignment - TraesCS2B01G574400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G574400 chr2B 100.000 4438 0 0 1 4438 763865658 763861221 0.000000e+00 8196.0
1 TraesCS2B01G574400 chr2D 95.298 3190 116 17 247 3434 621968314 621965157 0.000000e+00 5029.0
2 TraesCS2B01G574400 chr2D 94.450 1009 31 8 3431 4438 621965026 621964042 0.000000e+00 1530.0
3 TraesCS2B01G574400 chr5D 79.286 980 188 13 2249 3219 29611387 29610414 0.000000e+00 671.0
4 TraesCS2B01G574400 chr6B 74.440 759 168 19 2230 2975 715967977 715967232 2.010000e-78 303.0
5 TraesCS2B01G574400 chr6B 74.185 736 156 25 2245 2960 707911752 707911031 4.370000e-70 276.0
6 TraesCS2B01G574400 chr6B 73.896 747 163 24 2245 2975 715943118 715942388 2.030000e-68 270.0
7 TraesCS2B01G574400 chr6B 72.668 761 184 17 2230 2975 707791119 707790368 9.600000e-57 231.0
8 TraesCS2B01G574400 chr6D 74.332 561 131 9 2227 2777 464060401 464059844 4.470000e-55 226.0
9 TraesCS2B01G574400 chr6A 72.215 799 191 20 2245 3026 610654509 610653725 2.690000e-52 217.0
10 TraesCS2B01G574400 chr7B 100.000 30 0 0 4408 4437 521129554 521129583 6.200000e-04 56.5
11 TraesCS2B01G574400 chr7A 100.000 30 0 0 4408 4437 113455567 113455596 6.200000e-04 56.5
12 TraesCS2B01G574400 chr7A 96.970 33 1 0 1202 1234 732505250 732505282 6.200000e-04 56.5
13 TraesCS2B01G574400 chr7A 100.000 29 0 0 4409 4437 156560734 156560706 2.000000e-03 54.7
14 TraesCS2B01G574400 chr4B 100.000 30 0 0 4409 4438 18095612 18095583 6.200000e-04 56.5
15 TraesCS2B01G574400 chr4B 100.000 29 0 0 4409 4437 565943822 565943794 2.000000e-03 54.7
16 TraesCS2B01G574400 chr3D 100.000 29 0 0 4409 4437 533933853 533933825 2.000000e-03 54.7
17 TraesCS2B01G574400 chr3B 100.000 29 0 0 4409 4437 14326691 14326719 2.000000e-03 54.7
18 TraesCS2B01G574400 chr1B 100.000 29 0 0 4409 4437 8087792 8087764 2.000000e-03 54.7
19 TraesCS2B01G574400 chr1B 100.000 29 0 0 4409 4437 488219250 488219222 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G574400 chr2B 763861221 763865658 4437 True 8196.0 8196 100.000 1 4438 1 chr2B.!!$R1 4437
1 TraesCS2B01G574400 chr2D 621964042 621968314 4272 True 3279.5 5029 94.874 247 4438 2 chr2D.!!$R1 4191
2 TraesCS2B01G574400 chr5D 29610414 29611387 973 True 671.0 671 79.286 2249 3219 1 chr5D.!!$R1 970
3 TraesCS2B01G574400 chr6B 715967232 715967977 745 True 303.0 303 74.440 2230 2975 1 chr6B.!!$R4 745
4 TraesCS2B01G574400 chr6B 707911031 707911752 721 True 276.0 276 74.185 2245 2960 1 chr6B.!!$R2 715
5 TraesCS2B01G574400 chr6B 715942388 715943118 730 True 270.0 270 73.896 2245 2975 1 chr6B.!!$R3 730
6 TraesCS2B01G574400 chr6B 707790368 707791119 751 True 231.0 231 72.668 2230 2975 1 chr6B.!!$R1 745
7 TraesCS2B01G574400 chr6D 464059844 464060401 557 True 226.0 226 74.332 2227 2777 1 chr6D.!!$R1 550
8 TraesCS2B01G574400 chr6A 610653725 610654509 784 True 217.0 217 72.215 2245 3026 1 chr6A.!!$R1 781

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
95 96 0.034767 TAGTCGAAGAAGGGCGGAGA 60.035 55.0 0.00 0.00 39.69 3.71 F
229 230 0.035036 AGGTCTGAGTCGTCGTCAGA 59.965 55.0 10.57 10.57 46.57 3.27 F
459 460 0.105142 TAGATCGGAAGGGGAAGGGG 60.105 60.0 0.00 0.00 0.00 4.79 F
839 840 0.109597 GTACACCGTACCCACACGAG 60.110 60.0 0.00 0.00 44.69 4.18 F
848 849 0.110678 ACCCACACGAGTCTCTCTCA 59.889 55.0 0.00 0.00 42.88 3.27 F
1263 1265 0.179000 ACCTCGATGAGTTCATGGCC 59.821 55.0 0.00 0.00 36.57 5.36 F
1890 1892 0.961019 TGCCAGTGCACCATCTTTTC 59.039 50.0 14.63 0.00 44.23 2.29 F
2064 2067 1.150827 GCCATTTGGAAAAGCACTGC 58.849 50.0 0.00 0.00 37.39 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1296 1298 0.104120 TGATATTGTCCACGAGCCCG 59.896 55.000 0.00 0.00 42.50 6.13 R
1590 1592 0.322456 TTGTCTTGCCCAATCCTCCG 60.322 55.000 0.00 0.00 0.00 4.63 R
1752 1754 1.346068 AGGAGTGTCTGCAAGTTCTCC 59.654 52.381 15.43 15.43 41.97 3.71 R
2294 2297 1.751924 CCCGGACTTGTTGTTGGAAAA 59.248 47.619 0.73 0.00 0.00 2.29 R
2351 2354 4.707030 TGATGAACAACATGATTCAGCC 57.293 40.909 18.00 12.23 39.85 4.85 R
3014 3035 1.021202 CGTTGTTCTGCAGGGACAAA 58.979 50.000 26.96 15.08 0.00 2.83 R
3372 3393 0.389391 ATCTCATCCGGCACCTTACG 59.611 55.000 0.00 0.00 0.00 3.18 R
3510 3665 1.134670 GGAGGAACGGAGAACCATGAG 60.135 57.143 0.00 0.00 35.59 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.815809 TCATCGGACAACCAAAAGAACT 58.184 40.909 0.00 0.00 35.59 3.01
22 23 4.963373 TCATCGGACAACCAAAAGAACTA 58.037 39.130 0.00 0.00 35.59 2.24
23 24 4.994852 TCATCGGACAACCAAAAGAACTAG 59.005 41.667 0.00 0.00 35.59 2.57
24 25 4.411256 TCGGACAACCAAAAGAACTAGT 57.589 40.909 0.00 0.00 35.59 2.57
25 26 4.124238 TCGGACAACCAAAAGAACTAGTG 58.876 43.478 0.00 0.00 35.59 2.74
26 27 3.875134 CGGACAACCAAAAGAACTAGTGT 59.125 43.478 0.00 0.00 35.59 3.55
27 28 4.334481 CGGACAACCAAAAGAACTAGTGTT 59.666 41.667 0.00 0.00 36.02 3.32
28 29 5.503520 CGGACAACCAAAAGAACTAGTGTTC 60.504 44.000 0.00 1.12 43.19 3.18
29 30 5.503520 GGACAACCAAAAGAACTAGTGTTCG 60.504 44.000 0.00 0.00 44.81 3.95
30 31 7.835979 GGACAACCAAAAGAACTAGTGTTCGT 61.836 42.308 0.00 0.00 44.81 3.85
31 32 9.511590 GGACAACCAAAAGAACTAGTGTTCGTC 62.512 44.444 0.00 5.40 44.81 4.20
36 37 1.337821 GAACTAGTGTTCGTCGCTGG 58.662 55.000 0.00 6.32 42.39 4.85
37 38 0.956633 AACTAGTGTTCGTCGCTGGA 59.043 50.000 0.00 0.00 38.29 3.86
38 39 0.240411 ACTAGTGTTCGTCGCTGGAC 59.760 55.000 0.00 0.00 38.29 4.02
39 40 0.240145 CTAGTGTTCGTCGCTGGACA 59.760 55.000 6.67 0.00 43.61 4.02
40 41 0.240145 TAGTGTTCGTCGCTGGACAG 59.760 55.000 0.00 0.00 43.61 3.51
41 42 1.299926 GTGTTCGTCGCTGGACAGT 60.300 57.895 0.82 0.00 43.61 3.55
42 43 0.039798 GTGTTCGTCGCTGGACAGTA 60.040 55.000 0.82 0.00 43.61 2.74
43 44 0.039798 TGTTCGTCGCTGGACAGTAC 60.040 55.000 0.82 0.00 43.61 2.73
44 45 0.731855 GTTCGTCGCTGGACAGTACC 60.732 60.000 0.82 0.00 43.61 3.34
45 46 0.892358 TTCGTCGCTGGACAGTACCT 60.892 55.000 0.82 0.00 43.61 3.08
46 47 0.036105 TCGTCGCTGGACAGTACCTA 60.036 55.000 0.82 0.00 43.61 3.08
47 48 0.806868 CGTCGCTGGACAGTACCTAA 59.193 55.000 0.82 0.00 43.61 2.69
48 49 1.404391 CGTCGCTGGACAGTACCTAAT 59.596 52.381 0.82 0.00 43.61 1.73
49 50 2.159282 CGTCGCTGGACAGTACCTAATT 60.159 50.000 0.82 0.00 43.61 1.40
50 51 3.065786 CGTCGCTGGACAGTACCTAATTA 59.934 47.826 0.82 0.00 43.61 1.40
51 52 4.439153 CGTCGCTGGACAGTACCTAATTAA 60.439 45.833 0.82 0.00 43.61 1.40
52 53 5.413499 GTCGCTGGACAGTACCTAATTAAA 58.587 41.667 0.82 0.00 42.91 1.52
53 54 5.290400 GTCGCTGGACAGTACCTAATTAAAC 59.710 44.000 0.82 0.00 42.91 2.01
54 55 5.047164 TCGCTGGACAGTACCTAATTAAACA 60.047 40.000 0.82 0.00 0.00 2.83
55 56 5.815740 CGCTGGACAGTACCTAATTAAACAT 59.184 40.000 0.82 0.00 0.00 2.71
56 57 6.982141 CGCTGGACAGTACCTAATTAAACATA 59.018 38.462 0.82 0.00 0.00 2.29
57 58 7.493320 CGCTGGACAGTACCTAATTAAACATAA 59.507 37.037 0.82 0.00 0.00 1.90
58 59 8.827677 GCTGGACAGTACCTAATTAAACATAAG 58.172 37.037 0.82 0.00 0.00 1.73
88 89 9.804758 AACTAGATAAAATGTAGTCGAAGAAGG 57.195 33.333 0.00 0.00 38.28 3.46
89 90 8.414778 ACTAGATAAAATGTAGTCGAAGAAGGG 58.585 37.037 0.00 0.00 39.69 3.95
90 91 6.049790 AGATAAAATGTAGTCGAAGAAGGGC 58.950 40.000 0.00 0.00 39.69 5.19
91 92 2.295253 AATGTAGTCGAAGAAGGGCG 57.705 50.000 0.00 0.00 39.69 6.13
92 93 0.460311 ATGTAGTCGAAGAAGGGCGG 59.540 55.000 0.00 0.00 39.69 6.13
93 94 0.609957 TGTAGTCGAAGAAGGGCGGA 60.610 55.000 0.00 0.00 39.69 5.54
94 95 0.100861 GTAGTCGAAGAAGGGCGGAG 59.899 60.000 0.00 0.00 39.69 4.63
95 96 0.034767 TAGTCGAAGAAGGGCGGAGA 60.035 55.000 0.00 0.00 39.69 3.71
96 97 0.898789 AGTCGAAGAAGGGCGGAGAA 60.899 55.000 0.00 0.00 39.69 2.87
97 98 0.037605 GTCGAAGAAGGGCGGAGAAA 60.038 55.000 0.00 0.00 39.69 2.52
98 99 0.902531 TCGAAGAAGGGCGGAGAAAT 59.097 50.000 0.00 0.00 0.00 2.17
99 100 1.134788 TCGAAGAAGGGCGGAGAAATC 60.135 52.381 0.00 0.00 0.00 2.17
100 101 1.405526 CGAAGAAGGGCGGAGAAATCA 60.406 52.381 0.00 0.00 0.00 2.57
101 102 2.010497 GAAGAAGGGCGGAGAAATCAC 58.990 52.381 0.00 0.00 0.00 3.06
102 103 0.253327 AGAAGGGCGGAGAAATCACC 59.747 55.000 0.00 0.00 0.00 4.02
103 104 0.035439 GAAGGGCGGAGAAATCACCA 60.035 55.000 0.00 0.00 0.00 4.17
104 105 0.625849 AAGGGCGGAGAAATCACCAT 59.374 50.000 0.00 0.00 0.00 3.55
105 106 0.625849 AGGGCGGAGAAATCACCATT 59.374 50.000 0.00 0.00 0.00 3.16
106 107 1.005924 AGGGCGGAGAAATCACCATTT 59.994 47.619 0.00 0.00 34.70 2.32
107 108 1.405463 GGGCGGAGAAATCACCATTTC 59.595 52.381 0.01 0.01 45.91 2.17
108 109 1.405463 GGCGGAGAAATCACCATTTCC 59.595 52.381 4.22 0.00 46.50 3.13
109 110 2.369394 GCGGAGAAATCACCATTTCCT 58.631 47.619 4.22 0.00 46.50 3.36
110 111 2.755103 GCGGAGAAATCACCATTTCCTT 59.245 45.455 4.22 0.00 46.50 3.36
111 112 3.428045 GCGGAGAAATCACCATTTCCTTG 60.428 47.826 4.22 0.00 46.50 3.61
112 113 3.428045 CGGAGAAATCACCATTTCCTTGC 60.428 47.826 4.22 0.00 46.50 4.01
113 114 3.766051 GGAGAAATCACCATTTCCTTGCT 59.234 43.478 4.22 0.00 46.50 3.91
114 115 4.381292 GGAGAAATCACCATTTCCTTGCTG 60.381 45.833 4.22 0.00 46.50 4.41
115 116 3.512724 AGAAATCACCATTTCCTTGCTGG 59.487 43.478 4.22 0.00 46.50 4.85
116 117 1.188863 ATCACCATTTCCTTGCTGGC 58.811 50.000 0.00 0.00 33.12 4.85
117 118 0.178967 TCACCATTTCCTTGCTGGCA 60.179 50.000 0.00 0.00 33.12 4.92
118 119 0.037975 CACCATTTCCTTGCTGGCAC 60.038 55.000 0.00 0.00 33.12 5.01
119 120 1.187567 ACCATTTCCTTGCTGGCACC 61.188 55.000 0.00 0.00 33.12 5.01
120 121 0.901580 CCATTTCCTTGCTGGCACCT 60.902 55.000 0.00 0.00 35.26 4.00
121 122 0.971386 CATTTCCTTGCTGGCACCTT 59.029 50.000 0.00 0.00 35.26 3.50
122 123 1.067354 CATTTCCTTGCTGGCACCTTC 60.067 52.381 0.00 0.00 35.26 3.46
123 124 0.827507 TTTCCTTGCTGGCACCTTCC 60.828 55.000 0.00 0.00 35.26 3.46
124 125 2.677875 CCTTGCTGGCACCTTCCC 60.678 66.667 0.00 0.00 0.00 3.97
125 126 2.677875 CTTGCTGGCACCTTCCCC 60.678 66.667 0.00 0.00 0.00 4.81
126 127 3.185203 TTGCTGGCACCTTCCCCT 61.185 61.111 0.00 0.00 0.00 4.79
127 128 2.720144 CTTGCTGGCACCTTCCCCTT 62.720 60.000 0.00 0.00 0.00 3.95
128 129 2.677875 GCTGGCACCTTCCCCTTG 60.678 66.667 0.00 0.00 0.00 3.61
129 130 2.677875 CTGGCACCTTCCCCTTGC 60.678 66.667 0.00 0.00 35.40 4.01
130 131 4.659172 TGGCACCTTCCCCTTGCG 62.659 66.667 0.00 0.00 37.11 4.85
132 133 4.660938 GCACCTTCCCCTTGCGGT 62.661 66.667 0.00 0.00 0.00 5.68
133 134 2.359975 CACCTTCCCCTTGCGGTC 60.360 66.667 0.00 0.00 0.00 4.79
134 135 2.529389 ACCTTCCCCTTGCGGTCT 60.529 61.111 0.00 0.00 0.00 3.85
135 136 2.269241 CCTTCCCCTTGCGGTCTC 59.731 66.667 0.00 0.00 0.00 3.36
136 137 2.269241 CTTCCCCTTGCGGTCTCC 59.731 66.667 0.00 0.00 0.00 3.71
146 147 2.738521 CGGTCTCCGGCACAGTTG 60.739 66.667 0.00 0.00 44.15 3.16
147 148 2.426023 GGTCTCCGGCACAGTTGT 59.574 61.111 0.00 0.00 0.00 3.32
148 149 1.669440 GGTCTCCGGCACAGTTGTA 59.331 57.895 0.00 0.00 0.00 2.41
149 150 0.669625 GGTCTCCGGCACAGTTGTAC 60.670 60.000 0.00 0.00 0.00 2.90
150 151 0.669625 GTCTCCGGCACAGTTGTACC 60.670 60.000 0.00 0.00 0.00 3.34
151 152 1.375523 CTCCGGCACAGTTGTACCC 60.376 63.158 0.00 0.00 0.00 3.69
152 153 2.359478 CCGGCACAGTTGTACCCC 60.359 66.667 0.00 0.00 0.00 4.95
153 154 2.747686 CGGCACAGTTGTACCCCT 59.252 61.111 0.00 0.00 0.00 4.79
154 155 1.375523 CGGCACAGTTGTACCCCTC 60.376 63.158 0.00 0.00 0.00 4.30
155 156 1.002502 GGCACAGTTGTACCCCTCC 60.003 63.158 0.00 0.00 0.00 4.30
156 157 1.758592 GCACAGTTGTACCCCTCCA 59.241 57.895 0.00 0.00 0.00 3.86
157 158 0.328258 GCACAGTTGTACCCCTCCAT 59.672 55.000 0.00 0.00 0.00 3.41
158 159 1.950484 GCACAGTTGTACCCCTCCATG 60.950 57.143 0.00 0.00 0.00 3.66
159 160 1.351017 CACAGTTGTACCCCTCCATGT 59.649 52.381 0.00 0.00 0.00 3.21
160 161 2.569853 CACAGTTGTACCCCTCCATGTA 59.430 50.000 0.00 0.00 0.00 2.29
161 162 2.838202 ACAGTTGTACCCCTCCATGTAG 59.162 50.000 0.00 0.00 0.00 2.74
162 163 2.170607 CAGTTGTACCCCTCCATGTAGG 59.829 54.545 0.00 0.00 39.47 3.18
163 164 1.134189 GTTGTACCCCTCCATGTAGGC 60.134 57.143 0.00 0.00 37.29 3.93
164 165 1.046472 TGTACCCCTCCATGTAGGCG 61.046 60.000 0.00 0.00 37.29 5.52
165 166 1.047034 GTACCCCTCCATGTAGGCGT 61.047 60.000 0.00 0.00 37.29 5.68
166 167 0.757935 TACCCCTCCATGTAGGCGTC 60.758 60.000 0.00 0.00 37.29 5.19
167 168 2.417516 CCCTCCATGTAGGCGTCG 59.582 66.667 0.00 0.00 37.29 5.12
168 169 2.417516 CCTCCATGTAGGCGTCGG 59.582 66.667 0.00 0.00 37.29 4.79
169 170 2.423898 CCTCCATGTAGGCGTCGGT 61.424 63.158 0.00 0.00 37.29 4.69
170 171 1.226974 CTCCATGTAGGCGTCGGTG 60.227 63.158 0.00 0.00 37.29 4.94
171 172 2.202878 CCATGTAGGCGTCGGTGG 60.203 66.667 0.00 0.00 0.00 4.61
172 173 2.890474 CATGTAGGCGTCGGTGGC 60.890 66.667 0.00 0.00 0.00 5.01
174 175 1.755395 ATGTAGGCGTCGGTGGCTA 60.755 57.895 6.94 6.94 43.83 3.93
175 176 1.735376 ATGTAGGCGTCGGTGGCTAG 61.735 60.000 10.52 0.00 46.25 3.42
176 177 2.117156 GTAGGCGTCGGTGGCTAGA 61.117 63.158 10.52 0.00 46.25 2.43
177 178 1.822613 TAGGCGTCGGTGGCTAGAG 60.823 63.158 6.94 0.00 43.83 2.43
178 179 4.208686 GGCGTCGGTGGCTAGAGG 62.209 72.222 0.00 0.00 0.00 3.69
179 180 4.208686 GCGTCGGTGGCTAGAGGG 62.209 72.222 0.00 0.00 0.00 4.30
180 181 3.528370 CGTCGGTGGCTAGAGGGG 61.528 72.222 0.00 0.00 0.00 4.79
181 182 3.851128 GTCGGTGGCTAGAGGGGC 61.851 72.222 0.00 0.00 0.00 5.80
184 185 3.400054 GGTGGCTAGAGGGGCGTT 61.400 66.667 0.00 0.00 34.31 4.84
185 186 2.125106 GTGGCTAGAGGGGCGTTG 60.125 66.667 0.00 0.00 34.31 4.10
186 187 2.606519 TGGCTAGAGGGGCGTTGT 60.607 61.111 0.00 0.00 34.31 3.32
187 188 2.221299 TGGCTAGAGGGGCGTTGTT 61.221 57.895 0.00 0.00 34.31 2.83
188 189 1.745489 GGCTAGAGGGGCGTTGTTG 60.745 63.158 0.00 0.00 0.00 3.33
189 190 1.003718 GCTAGAGGGGCGTTGTTGT 60.004 57.895 0.00 0.00 0.00 3.32
190 191 1.019805 GCTAGAGGGGCGTTGTTGTC 61.020 60.000 0.00 0.00 0.00 3.18
191 192 0.320374 CTAGAGGGGCGTTGTTGTCA 59.680 55.000 0.00 0.00 0.00 3.58
192 193 0.759959 TAGAGGGGCGTTGTTGTCAA 59.240 50.000 0.00 0.00 0.00 3.18
193 194 0.106918 AGAGGGGCGTTGTTGTCAAA 60.107 50.000 0.00 0.00 35.20 2.69
194 195 0.310854 GAGGGGCGTTGTTGTCAAAG 59.689 55.000 0.00 0.00 35.20 2.77
200 201 2.842208 CGTTGTTGTCAAAGCAGGAA 57.158 45.000 0.00 0.00 35.20 3.36
201 202 2.450160 CGTTGTTGTCAAAGCAGGAAC 58.550 47.619 0.00 0.00 35.20 3.62
202 203 2.097466 CGTTGTTGTCAAAGCAGGAACT 59.903 45.455 0.00 0.00 35.06 3.01
203 204 3.438360 GTTGTTGTCAAAGCAGGAACTG 58.562 45.455 0.00 0.00 46.94 3.16
204 205 3.119495 GTTGTTGTCAAAGCAGGAACTGT 60.119 43.478 0.00 0.00 46.37 3.55
215 216 1.807814 AGGAACTGTTGGTGAGGTCT 58.192 50.000 0.00 0.00 37.18 3.85
216 217 1.417890 AGGAACTGTTGGTGAGGTCTG 59.582 52.381 0.00 0.00 37.18 3.51
217 218 1.416401 GGAACTGTTGGTGAGGTCTGA 59.584 52.381 0.00 0.00 0.00 3.27
218 219 2.548920 GGAACTGTTGGTGAGGTCTGAG 60.549 54.545 0.00 0.00 0.00 3.35
219 220 1.794714 ACTGTTGGTGAGGTCTGAGT 58.205 50.000 0.00 0.00 0.00 3.41
220 221 1.689273 ACTGTTGGTGAGGTCTGAGTC 59.311 52.381 0.00 0.00 0.00 3.36
221 222 0.673985 TGTTGGTGAGGTCTGAGTCG 59.326 55.000 0.00 0.00 0.00 4.18
222 223 0.674534 GTTGGTGAGGTCTGAGTCGT 59.325 55.000 0.00 0.00 0.00 4.34
223 224 0.959553 TTGGTGAGGTCTGAGTCGTC 59.040 55.000 0.00 0.00 0.00 4.20
224 225 1.235281 TGGTGAGGTCTGAGTCGTCG 61.235 60.000 0.00 0.00 0.00 5.12
225 226 1.235948 GGTGAGGTCTGAGTCGTCGT 61.236 60.000 0.00 0.00 0.00 4.34
226 227 0.166379 GTGAGGTCTGAGTCGTCGTC 59.834 60.000 0.00 0.00 0.00 4.20
227 228 0.250166 TGAGGTCTGAGTCGTCGTCA 60.250 55.000 0.00 0.00 0.00 4.35
228 229 0.444651 GAGGTCTGAGTCGTCGTCAG 59.555 60.000 6.54 6.54 42.51 3.51
229 230 0.035036 AGGTCTGAGTCGTCGTCAGA 59.965 55.000 10.57 10.57 46.57 3.27
231 232 2.842320 TCTGAGTCGTCGTCAGAGG 58.158 57.895 10.57 0.00 44.43 3.69
232 233 0.320697 TCTGAGTCGTCGTCAGAGGA 59.679 55.000 10.57 0.00 44.43 3.71
233 234 0.724549 CTGAGTCGTCGTCAGAGGAG 59.275 60.000 6.97 0.00 43.65 3.69
234 235 0.320697 TGAGTCGTCGTCAGAGGAGA 59.679 55.000 0.00 0.00 41.31 3.71
235 236 1.066071 TGAGTCGTCGTCAGAGGAGAT 60.066 52.381 0.00 0.00 41.31 2.75
236 237 2.167900 TGAGTCGTCGTCAGAGGAGATA 59.832 50.000 0.00 0.00 41.31 1.98
237 238 3.181464 TGAGTCGTCGTCAGAGGAGATAT 60.181 47.826 0.00 0.00 41.31 1.63
238 239 3.810941 GAGTCGTCGTCAGAGGAGATATT 59.189 47.826 0.00 0.00 41.31 1.28
239 240 3.562141 AGTCGTCGTCAGAGGAGATATTG 59.438 47.826 0.00 0.00 41.31 1.90
240 241 2.290916 TCGTCGTCAGAGGAGATATTGC 59.709 50.000 0.00 0.00 36.48 3.56
241 242 2.292016 CGTCGTCAGAGGAGATATTGCT 59.708 50.000 0.00 0.00 34.40 3.91
242 243 3.637432 GTCGTCAGAGGAGATATTGCTG 58.363 50.000 0.00 0.00 0.00 4.41
243 244 2.625314 TCGTCAGAGGAGATATTGCTGG 59.375 50.000 0.00 0.00 0.00 4.85
244 245 2.363680 CGTCAGAGGAGATATTGCTGGT 59.636 50.000 0.00 0.00 0.00 4.00
245 246 3.551863 CGTCAGAGGAGATATTGCTGGTC 60.552 52.174 0.00 0.00 0.00 4.02
249 250 4.040095 CAGAGGAGATATTGCTGGTCATCA 59.960 45.833 0.00 0.00 0.00 3.07
267 268 2.746375 ATCTGGATGGCGTGGTCCC 61.746 63.158 0.00 0.00 33.45 4.46
299 300 1.080093 CGCCTTTGTCGTAGCCTCA 60.080 57.895 0.00 0.00 0.00 3.86
300 301 0.460284 CGCCTTTGTCGTAGCCTCAT 60.460 55.000 0.00 0.00 0.00 2.90
447 448 1.491670 CGTCACTTGCCATAGATCGG 58.508 55.000 0.00 0.00 0.00 4.18
459 460 0.105142 TAGATCGGAAGGGGAAGGGG 60.105 60.000 0.00 0.00 0.00 4.79
468 469 2.692741 GGGAAGGGGTGGGGAGAG 60.693 72.222 0.00 0.00 0.00 3.20
470 471 2.454941 GAAGGGGTGGGGAGAGGA 59.545 66.667 0.00 0.00 0.00 3.71
471 472 1.229853 GAAGGGGTGGGGAGAGGAA 60.230 63.158 0.00 0.00 0.00 3.36
496 497 1.475403 ACGGAGTGATAGTGGAGTGG 58.525 55.000 0.00 0.00 42.51 4.00
519 520 2.542595 GTGTGTTGACTTTGGTCTACGG 59.457 50.000 0.00 0.00 46.04 4.02
523 524 2.427232 TGACTTTGGTCTACGGTTCG 57.573 50.000 0.00 0.00 42.54 3.95
525 526 2.287788 TGACTTTGGTCTACGGTTCGTC 60.288 50.000 0.00 0.00 42.54 4.20
526 527 1.959282 ACTTTGGTCTACGGTTCGTCT 59.041 47.619 0.00 0.00 41.54 4.18
527 528 2.288030 ACTTTGGTCTACGGTTCGTCTG 60.288 50.000 0.00 0.00 41.54 3.51
547 548 3.458118 CTGAAGTGGGGTTATATGTGGGA 59.542 47.826 0.00 0.00 0.00 4.37
553 554 2.236395 GGGGTTATATGTGGGATCGGAG 59.764 54.545 0.00 0.00 0.00 4.63
556 557 3.306780 GGTTATATGTGGGATCGGAGTGG 60.307 52.174 0.00 0.00 0.00 4.00
583 584 1.744320 TAGGCCGGTCCGATGTGATG 61.744 60.000 14.39 0.00 40.77 3.07
717 718 4.371624 TGGATGACCAATGAAGACAACT 57.628 40.909 0.00 0.00 43.91 3.16
721 722 4.898829 TGACCAATGAAGACAACTGTTG 57.101 40.909 18.44 18.44 0.00 3.33
824 825 3.299977 AGCCGTCGGTGCTGTACA 61.300 61.111 13.94 0.00 37.76 2.90
835 836 1.114119 TGCTGTACACCGTACCCACA 61.114 55.000 0.00 0.00 0.00 4.17
836 837 0.668401 GCTGTACACCGTACCCACAC 60.668 60.000 0.00 0.00 0.00 3.82
838 839 0.821301 TGTACACCGTACCCACACGA 60.821 55.000 0.00 0.00 44.69 4.35
839 840 0.109597 GTACACCGTACCCACACGAG 60.110 60.000 0.00 0.00 44.69 4.18
840 841 0.537143 TACACCGTACCCACACGAGT 60.537 55.000 0.00 0.00 44.69 4.18
841 842 1.080974 CACCGTACCCACACGAGTC 60.081 63.158 0.00 0.00 44.69 3.36
842 843 1.228367 ACCGTACCCACACGAGTCT 60.228 57.895 0.00 0.00 44.69 3.24
843 844 1.239968 ACCGTACCCACACGAGTCTC 61.240 60.000 0.00 0.00 44.69 3.36
844 845 0.959372 CCGTACCCACACGAGTCTCT 60.959 60.000 0.00 0.00 44.69 3.10
845 846 0.447011 CGTACCCACACGAGTCTCTC 59.553 60.000 0.00 0.00 44.69 3.20
846 847 1.823797 GTACCCACACGAGTCTCTCT 58.176 55.000 0.00 0.00 0.00 3.10
847 848 1.738908 GTACCCACACGAGTCTCTCTC 59.261 57.143 0.00 0.00 39.62 3.20
848 849 0.110678 ACCCACACGAGTCTCTCTCA 59.889 55.000 0.00 0.00 42.88 3.27
849 850 0.523966 CCCACACGAGTCTCTCTCAC 59.476 60.000 0.00 0.00 42.88 3.51
850 851 1.529226 CCACACGAGTCTCTCTCACT 58.471 55.000 0.00 0.00 42.88 3.41
851 852 1.198867 CCACACGAGTCTCTCTCACTG 59.801 57.143 0.00 0.00 42.88 3.66
852 853 1.198867 CACACGAGTCTCTCTCACTGG 59.801 57.143 0.00 0.00 42.88 4.00
853 854 1.202830 ACACGAGTCTCTCTCACTGGT 60.203 52.381 0.00 0.00 42.88 4.00
854 855 2.038689 ACACGAGTCTCTCTCACTGGTA 59.961 50.000 0.00 0.00 42.88 3.25
855 856 2.417239 CACGAGTCTCTCTCACTGGTAC 59.583 54.545 0.00 0.00 42.88 3.34
874 875 4.812626 GGTACTACAACCATTAACATCGGG 59.187 45.833 0.00 0.00 39.50 5.14
910 912 0.798776 CCACATTGTCGAGCAAGGAC 59.201 55.000 15.69 0.00 40.96 3.85
963 965 3.764810 CTGCCGCACCACGCAAAAA 62.765 57.895 0.00 0.00 42.60 1.94
965 967 2.411290 CCGCACCACGCAAAAAGT 59.589 55.556 0.00 0.00 42.60 2.66
1083 1085 0.317436 CTCTGCTCGGCGATGAGTAC 60.317 60.000 11.27 0.00 38.28 2.73
1117 1119 4.338682 GGAGTATACACACCGAGATCAAGT 59.661 45.833 5.50 0.00 0.00 3.16
1155 1157 3.411415 GAAACCATCGATGCTTTCCTG 57.589 47.619 25.78 12.67 30.07 3.86
1263 1265 0.179000 ACCTCGATGAGTTCATGGCC 59.821 55.000 0.00 0.00 36.57 5.36
1270 1272 3.950794 GAGTTCATGGCCCGCGTCA 62.951 63.158 4.92 0.24 0.00 4.35
1319 1321 3.126831 GGCTCGTGGACAATATCAAGAG 58.873 50.000 0.00 0.00 40.64 2.85
1326 1328 4.034975 GTGGACAATATCAAGAGCAAGCTC 59.965 45.833 14.00 14.00 43.03 4.09
1383 1385 4.327357 GCGATCGAAGATCTCAAGAAACAA 59.673 41.667 21.57 0.00 45.12 2.83
1389 1391 5.638783 GAAGATCTCAAGAAACAAGCCATG 58.361 41.667 0.00 0.00 0.00 3.66
1431 1433 1.449601 GTACAGGGACCACGCCATG 60.450 63.158 0.00 0.00 44.85 3.66
1500 1502 3.487711 CCATCTTCGAGGACGTGTCTAAG 60.488 52.174 0.00 0.00 40.69 2.18
1518 1520 2.046285 GCTTGTTGGGGTCGATGGG 61.046 63.158 0.00 0.00 0.00 4.00
1590 1592 1.816074 TGGTCGCTATTGTTGGGTTC 58.184 50.000 0.00 0.00 0.00 3.62
1651 1653 1.844687 AGAGCTCAAAGGGCAATTCC 58.155 50.000 17.77 0.00 0.00 3.01
1698 1700 4.119862 CACGGAATCCAGACATCGTTAAT 58.880 43.478 0.00 0.00 0.00 1.40
1771 1773 1.802069 GGAGAACTTGCAGACACTCC 58.198 55.000 13.39 13.39 37.37 3.85
1849 1851 3.187227 CCGGCTTCTCATTTTATCATCCG 59.813 47.826 0.00 0.00 0.00 4.18
1890 1892 0.961019 TGCCAGTGCACCATCTTTTC 59.039 50.000 14.63 0.00 44.23 2.29
1895 1897 4.261994 GCCAGTGCACCATCTTTTCTTTTA 60.262 41.667 14.63 0.00 37.47 1.52
1896 1898 5.567423 GCCAGTGCACCATCTTTTCTTTTAT 60.567 40.000 14.63 0.00 37.47 1.40
1897 1899 6.458210 CCAGTGCACCATCTTTTCTTTTATT 58.542 36.000 14.63 0.00 0.00 1.40
1898 1900 6.930722 CCAGTGCACCATCTTTTCTTTTATTT 59.069 34.615 14.63 0.00 0.00 1.40
2047 2050 3.779759 TGGACAAAATGATTATTGCGCC 58.220 40.909 4.18 0.00 0.00 6.53
2052 2055 6.109320 ACAAAATGATTATTGCGCCATTTG 57.891 33.333 17.02 13.83 38.68 2.32
2063 2066 1.421382 CGCCATTTGGAAAAGCACTG 58.579 50.000 0.00 0.00 37.39 3.66
2064 2067 1.150827 GCCATTTGGAAAAGCACTGC 58.849 50.000 0.00 0.00 37.39 4.40
2070 2073 5.472148 CATTTGGAAAAGCACTGCAGATAA 58.528 37.500 23.35 0.00 0.00 1.75
2074 2077 6.832520 TGGAAAAGCACTGCAGATAATTTA 57.167 33.333 23.35 0.10 0.00 1.40
2110 2113 3.855689 AAAGTTTGGATCATGCGGAAG 57.144 42.857 0.00 0.00 0.00 3.46
2174 2177 9.866655 ATGCCTCCAGATATTTGAACTAATTTA 57.133 29.630 0.00 0.00 0.00 1.40
2243 2246 5.880054 TGCTTTTCTGCAGGTACTTAATC 57.120 39.130 15.13 0.00 38.12 1.75
2294 2297 5.887598 TGATTGGAATGCTATTAAGTGTGCT 59.112 36.000 0.00 0.00 0.00 4.40
2351 2354 7.200455 TCACCACTACTCGTATAAATGATGTG 58.800 38.462 0.00 0.00 0.00 3.21
2517 2523 2.350899 TTTGCAGAAATGTGATGGCG 57.649 45.000 0.00 0.00 0.00 5.69
2531 2537 1.476488 GATGGCGTACCTTTGGCAATT 59.524 47.619 0.00 0.00 44.27 2.32
2686 2695 2.954989 TGGATCTTCCTCGTCATCTCAG 59.045 50.000 0.00 0.00 37.46 3.35
2725 2734 6.825944 TCTGAGTATATTCCCAGAAGATCG 57.174 41.667 0.00 0.00 33.26 3.69
2974 2992 8.837788 AACTTTGTTACTGTAATAGGTGTACC 57.162 34.615 3.23 0.00 0.00 3.34
2975 2993 7.965718 ACTTTGTTACTGTAATAGGTGTACCA 58.034 34.615 3.23 0.00 38.89 3.25
2976 2994 8.092687 ACTTTGTTACTGTAATAGGTGTACCAG 58.907 37.037 3.23 0.00 38.89 4.00
3014 3035 1.336887 CCACAGATGAAGGTTCGTCGT 60.337 52.381 6.34 5.36 45.57 4.34
3150 3171 1.601903 TGCGTGTCATGGACTTTGAAC 59.398 47.619 0.00 0.00 33.15 3.18
3248 3269 1.526917 AGGTGCACTCAAAGCGCTT 60.527 52.632 18.98 18.98 41.94 4.68
3258 3279 1.376037 AAAGCGCTTCCGGAAGAGG 60.376 57.895 41.64 31.92 40.79 3.69
3357 3378 5.471257 GGCTGGTATGTAATGTAGCTCTAC 58.529 45.833 0.00 0.27 36.63 2.59
3369 3390 5.808366 TGTAGCTCTACATCTTAATGGGG 57.192 43.478 5.69 0.00 40.77 4.96
3370 3391 4.593206 TGTAGCTCTACATCTTAATGGGGG 59.407 45.833 5.69 0.00 40.77 5.40
3372 3393 3.648545 AGCTCTACATCTTAATGGGGGTC 59.351 47.826 0.00 0.00 37.19 4.46
3373 3394 3.555168 GCTCTACATCTTAATGGGGGTCG 60.555 52.174 0.00 0.00 37.19 4.79
3391 3412 0.389391 CGTAAGGTGCCGGATGAGAT 59.611 55.000 5.05 0.00 0.00 2.75
3392 3413 1.611977 CGTAAGGTGCCGGATGAGATA 59.388 52.381 5.05 0.00 0.00 1.98
3428 3449 3.591023 GCTAAGAGTGTTGGAAGGTCTC 58.409 50.000 0.00 0.00 0.00 3.36
3461 3616 1.433534 GGAAAAGCAGGACTCGAGTG 58.566 55.000 25.58 10.20 0.00 3.51
3501 3656 3.257393 CGAGGAAGTGGTTGAGATCTTG 58.743 50.000 0.00 0.00 0.00 3.02
3510 3665 3.198635 TGGTTGAGATCTTGGAGATGGAC 59.801 47.826 0.00 0.00 34.53 4.02
3602 3757 1.452651 CATGGATGGCCTCGCTTGT 60.453 57.895 3.32 0.00 34.31 3.16
3722 3877 4.335315 GTGGGCTGATTTTGATTATGACGA 59.665 41.667 0.00 0.00 0.00 4.20
3774 3929 2.399356 GGCTGCTGTACGGAAAGCC 61.399 63.158 24.84 24.84 46.04 4.35
3861 4016 6.515272 TTCTTGCAGGTATGGATTTCTTTC 57.485 37.500 0.00 0.00 0.00 2.62
3865 4020 3.633986 GCAGGTATGGATTTCTTTCCCTG 59.366 47.826 0.00 0.00 34.67 4.45
3883 4038 3.548818 CCCTGCAAACAACTCTTTCTTCG 60.549 47.826 0.00 0.00 0.00 3.79
3889 4044 6.080406 GCAAACAACTCTTTCTTCGGAATAG 58.920 40.000 0.00 0.00 33.58 1.73
3890 4045 6.293462 GCAAACAACTCTTTCTTCGGAATAGT 60.293 38.462 0.00 0.00 34.27 2.12
3891 4046 7.095355 GCAAACAACTCTTTCTTCGGAATAGTA 60.095 37.037 0.00 0.00 33.24 1.82
3892 4047 7.886405 AACAACTCTTTCTTCGGAATAGTAC 57.114 36.000 0.00 0.00 33.24 2.73
3893 4048 6.989659 ACAACTCTTTCTTCGGAATAGTACA 58.010 36.000 0.00 0.00 33.24 2.90
3894 4049 7.612677 ACAACTCTTTCTTCGGAATAGTACAT 58.387 34.615 0.00 0.00 33.24 2.29
3895 4050 8.095169 ACAACTCTTTCTTCGGAATAGTACATT 58.905 33.333 0.00 0.00 33.24 2.71
3896 4051 8.936864 CAACTCTTTCTTCGGAATAGTACATTT 58.063 33.333 0.00 0.00 33.24 2.32
3900 4055 8.653338 TCTTTCTTCGGAATAGTACATTTTTCG 58.347 33.333 0.00 0.00 33.58 3.46
3922 4077 4.213482 CGTCACATCCTGTCACGATATCTA 59.787 45.833 0.00 0.00 32.08 1.98
3935 4090 3.175152 CGATATCTAGCCATCTCGCAAC 58.825 50.000 0.34 0.00 0.00 4.17
3946 4101 4.675146 GCCATCTCGCAACAAACATAATGT 60.675 41.667 0.00 0.00 0.00 2.71
4022 4177 3.680458 CCGTTTCCTAGCTCTGAAACTTC 59.320 47.826 25.96 10.84 45.08 3.01
4090 4245 3.693807 ACAGGCATGATGTCAATCTTGT 58.306 40.909 4.84 0.00 39.20 3.16
4133 4288 8.725148 TCTTACGTTTCCTACTACTAAGTCAAG 58.275 37.037 0.00 0.00 37.15 3.02
4150 4305 2.872245 TCAAGCCACGTTCTTTCTTCTG 59.128 45.455 0.00 0.00 0.00 3.02
4156 4311 1.217882 CGTTCTTTCTTCTGCGGTGT 58.782 50.000 0.00 0.00 0.00 4.16
4285 4440 9.231297 TCCAAATCATAAATAAAGGATCGGATC 57.769 33.333 9.54 9.54 0.00 3.36
4299 4454 5.957168 AGGATCGGATCAGATCATTGTATCT 59.043 40.000 29.23 16.52 46.55 1.98
4322 4477 0.378257 AATGTCGCCGCTGCTTATTG 59.622 50.000 0.00 0.00 34.43 1.90
4334 4489 4.485163 GCTGCTTATTGGAAATGACGTTT 58.515 39.130 0.00 0.00 0.00 3.60
4370 4525 6.691388 TGAATCGAGTAAGTCAACATGTATCG 59.309 38.462 0.00 0.00 0.00 2.92
4393 4548 6.257849 TCGGACATTGTGTTATTTATGCTCTC 59.742 38.462 0.00 0.00 0.00 3.20
4423 4578 0.743701 TTACGTGCGTTGGTGTTGGT 60.744 50.000 1.66 0.00 0.00 3.67
4428 4583 1.244697 TGCGTTGGTGTTGGTTGTGT 61.245 50.000 0.00 0.00 0.00 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.755123 ACTAGTTCTTTTGGTTGTCCGATG 59.245 41.667 0.00 0.00 36.30 3.84
2 3 4.755123 CACTAGTTCTTTTGGTTGTCCGAT 59.245 41.667 0.00 0.00 36.30 4.18
3 4 4.124238 CACTAGTTCTTTTGGTTGTCCGA 58.876 43.478 0.00 0.00 36.30 4.55
4 5 3.875134 ACACTAGTTCTTTTGGTTGTCCG 59.125 43.478 0.00 0.00 36.30 4.79
5 6 5.830000 AACACTAGTTCTTTTGGTTGTCC 57.170 39.130 0.00 0.00 30.46 4.02
18 19 0.956633 TCCAGCGACGAACACTAGTT 59.043 50.000 0.00 0.00 41.64 2.24
19 20 0.240411 GTCCAGCGACGAACACTAGT 59.760 55.000 0.00 0.00 0.00 2.57
20 21 0.240145 TGTCCAGCGACGAACACTAG 59.760 55.000 0.00 0.00 42.37 2.57
21 22 0.240145 CTGTCCAGCGACGAACACTA 59.760 55.000 0.00 0.00 42.37 2.74
22 23 1.007271 CTGTCCAGCGACGAACACT 60.007 57.895 0.00 0.00 42.37 3.55
23 24 0.039798 TACTGTCCAGCGACGAACAC 60.040 55.000 0.00 0.00 42.37 3.32
24 25 0.039798 GTACTGTCCAGCGACGAACA 60.040 55.000 0.00 0.00 42.37 3.18
25 26 0.731855 GGTACTGTCCAGCGACGAAC 60.732 60.000 0.00 0.00 42.37 3.95
26 27 0.892358 AGGTACTGTCCAGCGACGAA 60.892 55.000 0.00 0.00 42.37 3.85
27 28 0.036105 TAGGTACTGTCCAGCGACGA 60.036 55.000 0.00 0.00 42.37 4.20
28 29 0.806868 TTAGGTACTGTCCAGCGACG 59.193 55.000 0.00 0.00 42.37 5.12
29 30 3.521947 AATTAGGTACTGTCCAGCGAC 57.478 47.619 0.00 0.00 41.52 5.19
30 31 5.047164 TGTTTAATTAGGTACTGTCCAGCGA 60.047 40.000 0.00 0.00 41.52 4.93
31 32 5.172934 TGTTTAATTAGGTACTGTCCAGCG 58.827 41.667 0.00 0.00 41.52 5.18
32 33 8.726870 TTATGTTTAATTAGGTACTGTCCAGC 57.273 34.615 0.00 0.00 41.52 4.85
62 63 9.804758 CCTTCTTCGACTACATTTTATCTAGTT 57.195 33.333 0.00 0.00 0.00 2.24
63 64 8.414778 CCCTTCTTCGACTACATTTTATCTAGT 58.585 37.037 0.00 0.00 0.00 2.57
64 65 7.382759 GCCCTTCTTCGACTACATTTTATCTAG 59.617 40.741 0.00 0.00 0.00 2.43
65 66 7.208080 GCCCTTCTTCGACTACATTTTATCTA 58.792 38.462 0.00 0.00 0.00 1.98
66 67 6.049790 GCCCTTCTTCGACTACATTTTATCT 58.950 40.000 0.00 0.00 0.00 1.98
67 68 5.050972 CGCCCTTCTTCGACTACATTTTATC 60.051 44.000 0.00 0.00 0.00 1.75
68 69 4.809426 CGCCCTTCTTCGACTACATTTTAT 59.191 41.667 0.00 0.00 0.00 1.40
69 70 4.178540 CGCCCTTCTTCGACTACATTTTA 58.821 43.478 0.00 0.00 0.00 1.52
70 71 3.000727 CGCCCTTCTTCGACTACATTTT 58.999 45.455 0.00 0.00 0.00 1.82
71 72 2.618053 CGCCCTTCTTCGACTACATTT 58.382 47.619 0.00 0.00 0.00 2.32
72 73 1.134788 CCGCCCTTCTTCGACTACATT 60.135 52.381 0.00 0.00 0.00 2.71
73 74 0.460311 CCGCCCTTCTTCGACTACAT 59.540 55.000 0.00 0.00 0.00 2.29
74 75 0.609957 TCCGCCCTTCTTCGACTACA 60.610 55.000 0.00 0.00 0.00 2.74
75 76 0.100861 CTCCGCCCTTCTTCGACTAC 59.899 60.000 0.00 0.00 0.00 2.73
76 77 0.034767 TCTCCGCCCTTCTTCGACTA 60.035 55.000 0.00 0.00 0.00 2.59
77 78 0.898789 TTCTCCGCCCTTCTTCGACT 60.899 55.000 0.00 0.00 0.00 4.18
78 79 0.037605 TTTCTCCGCCCTTCTTCGAC 60.038 55.000 0.00 0.00 0.00 4.20
79 80 0.902531 ATTTCTCCGCCCTTCTTCGA 59.097 50.000 0.00 0.00 0.00 3.71
80 81 1.291132 GATTTCTCCGCCCTTCTTCG 58.709 55.000 0.00 0.00 0.00 3.79
81 82 2.010497 GTGATTTCTCCGCCCTTCTTC 58.990 52.381 0.00 0.00 0.00 2.87
82 83 1.340114 GGTGATTTCTCCGCCCTTCTT 60.340 52.381 0.00 0.00 0.00 2.52
83 84 0.253327 GGTGATTTCTCCGCCCTTCT 59.747 55.000 0.00 0.00 0.00 2.85
84 85 0.035439 TGGTGATTTCTCCGCCCTTC 60.035 55.000 0.00 0.00 33.41 3.46
85 86 0.625849 ATGGTGATTTCTCCGCCCTT 59.374 50.000 0.00 0.00 33.41 3.95
86 87 0.625849 AATGGTGATTTCTCCGCCCT 59.374 50.000 0.00 0.00 33.41 5.19
87 88 1.405463 GAAATGGTGATTTCTCCGCCC 59.595 52.381 0.00 0.00 42.93 6.13
88 89 1.405463 GGAAATGGTGATTTCTCCGCC 59.595 52.381 0.00 0.00 44.81 6.13
89 90 2.369394 AGGAAATGGTGATTTCTCCGC 58.631 47.619 0.00 0.00 44.81 5.54
90 91 3.428045 GCAAGGAAATGGTGATTTCTCCG 60.428 47.826 0.00 0.00 44.81 4.63
91 92 3.766051 AGCAAGGAAATGGTGATTTCTCC 59.234 43.478 0.00 0.00 44.81 3.71
99 100 0.037975 GTGCCAGCAAGGAAATGGTG 60.038 55.000 0.00 0.00 45.87 4.17
100 101 1.187567 GGTGCCAGCAAGGAAATGGT 61.188 55.000 0.00 0.00 41.22 3.55
101 102 0.901580 AGGTGCCAGCAAGGAAATGG 60.902 55.000 0.00 0.00 41.22 3.16
102 103 0.971386 AAGGTGCCAGCAAGGAAATG 59.029 50.000 0.00 0.00 41.22 2.32
103 104 1.260544 GAAGGTGCCAGCAAGGAAAT 58.739 50.000 0.00 0.00 41.22 2.17
104 105 0.827507 GGAAGGTGCCAGCAAGGAAA 60.828 55.000 0.00 0.00 41.22 3.13
105 106 1.228552 GGAAGGTGCCAGCAAGGAA 60.229 57.895 0.00 0.00 41.22 3.36
106 107 2.436109 GGAAGGTGCCAGCAAGGA 59.564 61.111 0.00 0.00 41.22 3.36
107 108 2.677875 GGGAAGGTGCCAGCAAGG 60.678 66.667 0.00 0.00 41.84 3.61
108 109 2.677875 GGGGAAGGTGCCAGCAAG 60.678 66.667 0.00 0.00 0.00 4.01
109 110 2.777960 AAGGGGAAGGTGCCAGCAA 61.778 57.895 0.00 0.00 0.00 3.91
110 111 3.185203 AAGGGGAAGGTGCCAGCA 61.185 61.111 0.00 0.00 0.00 4.41
111 112 2.677875 CAAGGGGAAGGTGCCAGC 60.678 66.667 0.00 0.00 0.00 4.85
112 113 2.677875 GCAAGGGGAAGGTGCCAG 60.678 66.667 0.00 0.00 31.94 4.85
113 114 4.659172 CGCAAGGGGAAGGTGCCA 62.659 66.667 0.00 0.00 34.73 4.92
125 126 4.680237 TGTGCCGGAGACCGCAAG 62.680 66.667 5.05 0.00 46.86 4.01
126 127 4.680237 CTGTGCCGGAGACCGCAA 62.680 66.667 5.05 0.00 46.86 4.85
128 129 4.681978 AACTGTGCCGGAGACCGC 62.682 66.667 5.05 0.00 46.86 5.68
130 131 0.669625 GTACAACTGTGCCGGAGACC 60.670 60.000 5.05 0.00 0.00 3.85
131 132 0.669625 GGTACAACTGTGCCGGAGAC 60.670 60.000 5.05 0.15 40.82 3.36
132 133 1.669440 GGTACAACTGTGCCGGAGA 59.331 57.895 5.05 0.00 40.82 3.71
133 134 4.278956 GGTACAACTGTGCCGGAG 57.721 61.111 5.05 0.00 40.82 4.63
138 139 0.328258 ATGGAGGGGTACAACTGTGC 59.672 55.000 0.00 0.00 0.00 4.57
139 140 1.351017 ACATGGAGGGGTACAACTGTG 59.649 52.381 0.00 0.00 0.00 3.66
140 141 1.742308 ACATGGAGGGGTACAACTGT 58.258 50.000 0.00 0.00 0.00 3.55
141 142 2.170607 CCTACATGGAGGGGTACAACTG 59.829 54.545 17.25 0.00 38.35 3.16
142 143 2.478292 CCTACATGGAGGGGTACAACT 58.522 52.381 17.25 0.00 38.35 3.16
143 144 1.134189 GCCTACATGGAGGGGTACAAC 60.134 57.143 25.94 2.76 37.06 3.32
144 145 1.209621 GCCTACATGGAGGGGTACAA 58.790 55.000 25.94 0.00 37.06 2.41
145 146 1.046472 CGCCTACATGGAGGGGTACA 61.046 60.000 28.96 0.00 43.03 2.90
146 147 1.746517 CGCCTACATGGAGGGGTAC 59.253 63.158 28.96 10.72 43.03 3.34
147 148 4.288234 CGCCTACATGGAGGGGTA 57.712 61.111 28.96 0.00 43.03 3.69
150 151 2.417516 CGACGCCTACATGGAGGG 59.582 66.667 25.94 17.27 40.14 4.30
151 152 2.417516 CCGACGCCTACATGGAGG 59.582 66.667 20.84 20.84 40.14 4.30
152 153 1.226974 CACCGACGCCTACATGGAG 60.227 63.158 0.00 0.00 41.69 3.86
153 154 2.717044 CCACCGACGCCTACATGGA 61.717 63.158 0.00 0.00 38.35 3.41
154 155 2.202878 CCACCGACGCCTACATGG 60.203 66.667 0.00 0.00 39.35 3.66
155 156 2.011741 TAGCCACCGACGCCTACATG 62.012 60.000 0.00 0.00 0.00 3.21
156 157 1.735376 CTAGCCACCGACGCCTACAT 61.735 60.000 0.00 0.00 0.00 2.29
157 158 2.361483 TAGCCACCGACGCCTACA 60.361 61.111 0.00 0.00 0.00 2.74
158 159 2.061182 CTCTAGCCACCGACGCCTAC 62.061 65.000 0.00 0.00 0.00 3.18
159 160 1.822613 CTCTAGCCACCGACGCCTA 60.823 63.158 0.00 0.00 0.00 3.93
160 161 3.141488 CTCTAGCCACCGACGCCT 61.141 66.667 0.00 0.00 0.00 5.52
161 162 4.208686 CCTCTAGCCACCGACGCC 62.209 72.222 0.00 0.00 0.00 5.68
162 163 4.208686 CCCTCTAGCCACCGACGC 62.209 72.222 0.00 0.00 0.00 5.19
163 164 3.528370 CCCCTCTAGCCACCGACG 61.528 72.222 0.00 0.00 0.00 5.12
164 165 3.851128 GCCCCTCTAGCCACCGAC 61.851 72.222 0.00 0.00 0.00 4.79
167 168 3.400054 AACGCCCCTCTAGCCACC 61.400 66.667 0.00 0.00 0.00 4.61
168 169 2.125106 CAACGCCCCTCTAGCCAC 60.125 66.667 0.00 0.00 0.00 5.01
169 170 2.221299 AACAACGCCCCTCTAGCCA 61.221 57.895 0.00 0.00 0.00 4.75
170 171 1.745489 CAACAACGCCCCTCTAGCC 60.745 63.158 0.00 0.00 0.00 3.93
171 172 1.003718 ACAACAACGCCCCTCTAGC 60.004 57.895 0.00 0.00 0.00 3.42
172 173 0.320374 TGACAACAACGCCCCTCTAG 59.680 55.000 0.00 0.00 0.00 2.43
173 174 0.759959 TTGACAACAACGCCCCTCTA 59.240 50.000 0.00 0.00 0.00 2.43
174 175 0.106918 TTTGACAACAACGCCCCTCT 60.107 50.000 0.00 0.00 35.63 3.69
175 176 0.310854 CTTTGACAACAACGCCCCTC 59.689 55.000 0.00 0.00 35.63 4.30
176 177 1.734388 GCTTTGACAACAACGCCCCT 61.734 55.000 0.00 0.00 42.70 4.79
177 178 1.299850 GCTTTGACAACAACGCCCC 60.300 57.895 0.00 0.00 42.70 5.80
178 179 0.594796 CTGCTTTGACAACAACGCCC 60.595 55.000 0.00 0.00 46.13 6.13
179 180 0.594796 CCTGCTTTGACAACAACGCC 60.595 55.000 0.00 0.00 46.13 5.68
180 181 0.380378 TCCTGCTTTGACAACAACGC 59.620 50.000 0.00 0.00 46.62 4.84
181 182 2.097466 AGTTCCTGCTTTGACAACAACG 59.903 45.455 0.00 0.00 35.63 4.10
182 183 3.119495 ACAGTTCCTGCTTTGACAACAAC 60.119 43.478 0.00 0.00 33.57 3.32
183 184 3.088532 ACAGTTCCTGCTTTGACAACAA 58.911 40.909 0.00 0.00 34.37 2.83
184 185 2.722094 ACAGTTCCTGCTTTGACAACA 58.278 42.857 0.00 0.00 34.37 3.33
185 186 3.438360 CAACAGTTCCTGCTTTGACAAC 58.562 45.455 0.00 0.00 34.37 3.32
186 187 2.426738 CCAACAGTTCCTGCTTTGACAA 59.573 45.455 0.00 0.00 34.37 3.18
187 188 2.023673 CCAACAGTTCCTGCTTTGACA 58.976 47.619 0.00 0.00 34.37 3.58
188 189 2.024414 ACCAACAGTTCCTGCTTTGAC 58.976 47.619 0.00 0.00 34.37 3.18
189 190 2.023673 CACCAACAGTTCCTGCTTTGA 58.976 47.619 0.00 0.00 34.37 2.69
190 191 2.023673 TCACCAACAGTTCCTGCTTTG 58.976 47.619 0.00 0.00 34.37 2.77
191 192 2.301346 CTCACCAACAGTTCCTGCTTT 58.699 47.619 0.00 0.00 34.37 3.51
192 193 1.477558 CCTCACCAACAGTTCCTGCTT 60.478 52.381 0.00 0.00 34.37 3.91
193 194 0.109342 CCTCACCAACAGTTCCTGCT 59.891 55.000 0.00 0.00 34.37 4.24
194 195 0.179018 ACCTCACCAACAGTTCCTGC 60.179 55.000 0.00 0.00 34.37 4.85
195 196 1.417890 AGACCTCACCAACAGTTCCTG 59.582 52.381 0.00 0.00 37.52 3.86
196 197 1.417890 CAGACCTCACCAACAGTTCCT 59.582 52.381 0.00 0.00 0.00 3.36
197 198 1.416401 TCAGACCTCACCAACAGTTCC 59.584 52.381 0.00 0.00 0.00 3.62
198 199 2.103263 ACTCAGACCTCACCAACAGTTC 59.897 50.000 0.00 0.00 0.00 3.01
199 200 2.103263 GACTCAGACCTCACCAACAGTT 59.897 50.000 0.00 0.00 0.00 3.16
200 201 1.689273 GACTCAGACCTCACCAACAGT 59.311 52.381 0.00 0.00 0.00 3.55
201 202 1.336332 CGACTCAGACCTCACCAACAG 60.336 57.143 0.00 0.00 0.00 3.16
202 203 0.673985 CGACTCAGACCTCACCAACA 59.326 55.000 0.00 0.00 0.00 3.33
203 204 0.674534 ACGACTCAGACCTCACCAAC 59.325 55.000 0.00 0.00 0.00 3.77
204 205 0.959553 GACGACTCAGACCTCACCAA 59.040 55.000 0.00 0.00 0.00 3.67
205 206 1.235281 CGACGACTCAGACCTCACCA 61.235 60.000 0.00 0.00 0.00 4.17
206 207 1.235948 ACGACGACTCAGACCTCACC 61.236 60.000 0.00 0.00 0.00 4.02
207 208 0.166379 GACGACGACTCAGACCTCAC 59.834 60.000 0.00 0.00 0.00 3.51
208 209 0.250166 TGACGACGACTCAGACCTCA 60.250 55.000 0.00 0.00 0.00 3.86
209 210 0.444651 CTGACGACGACTCAGACCTC 59.555 60.000 9.27 0.00 37.90 3.85
210 211 0.035036 TCTGACGACGACTCAGACCT 59.965 55.000 12.65 0.00 39.41 3.85
211 212 0.444651 CTCTGACGACGACTCAGACC 59.555 60.000 12.65 0.00 39.41 3.85
212 213 0.444651 CCTCTGACGACGACTCAGAC 59.555 60.000 12.65 0.00 39.41 3.51
213 214 0.320697 TCCTCTGACGACGACTCAGA 59.679 55.000 15.07 15.07 41.55 3.27
214 215 0.724549 CTCCTCTGACGACGACTCAG 59.275 60.000 0.00 5.42 37.14 3.35
215 216 0.320697 TCTCCTCTGACGACGACTCA 59.679 55.000 0.00 0.00 0.00 3.41
216 217 1.658994 ATCTCCTCTGACGACGACTC 58.341 55.000 0.00 0.00 0.00 3.36
217 218 2.983907 TATCTCCTCTGACGACGACT 57.016 50.000 0.00 0.00 0.00 4.18
218 219 3.850374 GCAATATCTCCTCTGACGACGAC 60.850 52.174 0.00 0.00 0.00 4.34
219 220 2.290916 GCAATATCTCCTCTGACGACGA 59.709 50.000 0.00 0.00 0.00 4.20
220 221 2.292016 AGCAATATCTCCTCTGACGACG 59.708 50.000 0.00 0.00 0.00 5.12
221 222 3.551863 CCAGCAATATCTCCTCTGACGAC 60.552 52.174 0.00 0.00 0.00 4.34
222 223 2.625314 CCAGCAATATCTCCTCTGACGA 59.375 50.000 0.00 0.00 0.00 4.20
223 224 2.363680 ACCAGCAATATCTCCTCTGACG 59.636 50.000 0.00 0.00 0.00 4.35
224 225 3.386078 TGACCAGCAATATCTCCTCTGAC 59.614 47.826 0.00 0.00 0.00 3.51
225 226 3.646534 TGACCAGCAATATCTCCTCTGA 58.353 45.455 0.00 0.00 0.00 3.27
226 227 4.040095 TGATGACCAGCAATATCTCCTCTG 59.960 45.833 0.00 0.00 0.00 3.35
227 228 4.229639 TGATGACCAGCAATATCTCCTCT 58.770 43.478 0.00 0.00 0.00 3.69
228 229 4.613925 TGATGACCAGCAATATCTCCTC 57.386 45.455 0.00 0.00 0.00 3.71
229 230 4.845225 AGATGATGACCAGCAATATCTCCT 59.155 41.667 0.00 0.00 31.53 3.69
230 231 4.936411 CAGATGATGACCAGCAATATCTCC 59.064 45.833 0.00 0.00 33.56 3.71
231 232 4.936411 CCAGATGATGACCAGCAATATCTC 59.064 45.833 0.00 0.00 33.56 2.75
232 233 4.596212 TCCAGATGATGACCAGCAATATCT 59.404 41.667 0.00 0.00 35.13 1.98
233 234 4.903054 TCCAGATGATGACCAGCAATATC 58.097 43.478 0.00 0.00 32.59 1.63
234 235 4.987963 TCCAGATGATGACCAGCAATAT 57.012 40.909 0.00 0.00 32.59 1.28
235 236 4.987963 ATCCAGATGATGACCAGCAATA 57.012 40.909 0.00 0.00 32.59 1.90
236 237 3.878237 ATCCAGATGATGACCAGCAAT 57.122 42.857 0.00 0.00 32.59 3.56
249 250 2.746375 GGGACCACGCCATCCAGAT 61.746 63.158 0.00 0.00 36.65 2.90
299 300 0.463295 CCATTGAGCAGTCGGAGCAT 60.463 55.000 0.00 0.00 0.00 3.79
300 301 1.078918 CCATTGAGCAGTCGGAGCA 60.079 57.895 0.00 0.00 0.00 4.26
324 325 0.820871 AAAAACACCAAAGCGCTCCA 59.179 45.000 12.06 0.00 0.00 3.86
366 367 0.982852 TCCCTCATGACGGCAAGGAT 60.983 55.000 10.79 0.00 0.00 3.24
373 374 2.187946 GGTGCTCCCTCATGACGG 59.812 66.667 4.47 4.47 0.00 4.79
426 427 1.221414 GATCTATGGCAAGTGACGGC 58.779 55.000 0.00 0.00 0.00 5.68
447 448 3.347590 CCCCACCCCTTCCCCTTC 61.348 72.222 0.00 0.00 0.00 3.46
459 460 1.066787 CGTCTTCTTTCCTCTCCCCAC 60.067 57.143 0.00 0.00 0.00 4.61
468 469 4.425520 CACTATCACTCCGTCTTCTTTCC 58.574 47.826 0.00 0.00 0.00 3.13
470 471 4.087182 TCCACTATCACTCCGTCTTCTTT 58.913 43.478 0.00 0.00 0.00 2.52
471 472 3.697045 CTCCACTATCACTCCGTCTTCTT 59.303 47.826 0.00 0.00 0.00 2.52
496 497 3.489785 CGTAGACCAAAGTCAACACACTC 59.510 47.826 0.00 0.00 46.15 3.51
519 520 2.825861 TAACCCCACTTCAGACGAAC 57.174 50.000 0.00 0.00 0.00 3.95
523 524 4.451900 CCACATATAACCCCACTTCAGAC 58.548 47.826 0.00 0.00 0.00 3.51
525 526 3.458118 TCCCACATATAACCCCACTTCAG 59.542 47.826 0.00 0.00 0.00 3.02
526 527 3.465832 TCCCACATATAACCCCACTTCA 58.534 45.455 0.00 0.00 0.00 3.02
527 528 4.652822 GATCCCACATATAACCCCACTTC 58.347 47.826 0.00 0.00 0.00 3.01
547 548 0.757188 CTAGCCTGGTCCACTCCGAT 60.757 60.000 0.00 0.00 0.00 4.18
608 609 1.101331 CTCAGCCCAAATCTTGAGCC 58.899 55.000 0.00 0.00 34.60 4.70
680 681 1.966451 CCAAGCAACAGGTCCGTCC 60.966 63.158 0.00 0.00 0.00 4.79
824 825 1.228367 AGACTCGTGTGGGTACGGT 60.228 57.895 0.00 0.00 43.85 4.83
826 827 0.447011 GAGAGACTCGTGTGGGTACG 59.553 60.000 0.00 0.00 44.98 3.67
838 839 4.912317 TGTAGTACCAGTGAGAGAGACT 57.088 45.455 0.00 0.00 0.00 3.24
839 840 4.156373 GGTTGTAGTACCAGTGAGAGAGAC 59.844 50.000 0.00 0.00 38.12 3.36
840 841 4.202535 TGGTTGTAGTACCAGTGAGAGAGA 60.203 45.833 0.00 0.00 43.14 3.10
841 842 4.079970 TGGTTGTAGTACCAGTGAGAGAG 58.920 47.826 0.00 0.00 43.14 3.20
842 843 4.108501 TGGTTGTAGTACCAGTGAGAGA 57.891 45.455 0.00 0.00 43.14 3.10
851 852 4.812626 CCCGATGTTAATGGTTGTAGTACC 59.187 45.833 0.00 0.00 38.73 3.34
852 853 5.422145 ACCCGATGTTAATGGTTGTAGTAC 58.578 41.667 0.00 0.00 0.00 2.73
853 854 5.680594 ACCCGATGTTAATGGTTGTAGTA 57.319 39.130 0.00 0.00 0.00 1.82
854 855 4.563140 ACCCGATGTTAATGGTTGTAGT 57.437 40.909 0.00 0.00 0.00 2.73
855 856 5.909477 TCTACCCGATGTTAATGGTTGTAG 58.091 41.667 0.00 0.00 32.27 2.74
874 875 2.166459 TGTGGTAGCTGCACTCATCTAC 59.834 50.000 3.61 0.00 39.79 2.59
910 912 7.274468 AGCTAGCGTCGATATTGATTTATTCAG 59.726 37.037 9.55 0.00 35.27 3.02
963 965 2.374184 CTAGCTAGCTCAGTGGTCACT 58.626 52.381 23.26 0.00 43.61 3.41
965 967 1.107114 GCTAGCTAGCTCAGTGGTCA 58.893 55.000 33.71 0.00 45.62 4.02
1044 1046 0.463833 CGACCAGCTTCCCCATAACC 60.464 60.000 0.00 0.00 0.00 2.85
1083 1085 1.901948 TATACTCCTCAGGCGCCGG 60.902 63.158 23.20 22.36 0.00 6.13
1155 1157 2.514824 GCCTCCGCCATGTTCTCC 60.515 66.667 0.00 0.00 0.00 3.71
1179 1181 3.234630 CTTGTCCTGCGGGTTCGGA 62.235 63.158 12.43 0.00 36.79 4.55
1270 1272 1.541310 TTGGAGGACTTGTCGGCGAT 61.541 55.000 14.79 0.00 0.00 4.58
1296 1298 0.104120 TGATATTGTCCACGAGCCCG 59.896 55.000 0.00 0.00 42.50 6.13
1299 1301 2.541762 GCTCTTGATATTGTCCACGAGC 59.458 50.000 0.00 0.00 43.79 5.03
1319 1321 2.075338 CCTTGAGTCTCTTGAGCTTGC 58.925 52.381 0.65 0.00 0.00 4.01
1326 1328 0.739112 GGCGAGCCTTGAGTCTCTTG 60.739 60.000 6.90 0.00 0.00 3.02
1383 1385 2.611800 TGGCTCACCTCCATGGCT 60.612 61.111 6.96 0.00 40.22 4.75
1389 1391 1.194781 TGTTCCTCTGGCTCACCTCC 61.195 60.000 0.00 0.00 36.63 4.30
1500 1502 2.046285 CCCATCGACCCCAACAAGC 61.046 63.158 0.00 0.00 0.00 4.01
1518 1520 0.393673 GGAGGAGCTCTTTCTTGGGC 60.394 60.000 14.64 0.00 0.00 5.36
1590 1592 0.322456 TTGTCTTGCCCAATCCTCCG 60.322 55.000 0.00 0.00 0.00 4.63
1651 1653 4.150627 CACGGATAAGAAGGCACGATATTG 59.849 45.833 0.00 0.00 0.00 1.90
1752 1754 1.346068 AGGAGTGTCTGCAAGTTCTCC 59.654 52.381 15.43 15.43 41.97 3.71
1771 1773 3.503748 AGGAACTCCAAAATCTTTGCGAG 59.496 43.478 0.00 12.29 38.89 5.03
1823 1825 6.015940 GGATGATAAAATGAGAAGCCGGAAAT 60.016 38.462 5.05 0.00 0.00 2.17
1824 1826 5.299279 GGATGATAAAATGAGAAGCCGGAAA 59.701 40.000 5.05 0.00 0.00 3.13
1825 1827 4.821805 GGATGATAAAATGAGAAGCCGGAA 59.178 41.667 5.05 0.00 0.00 4.30
1873 1875 4.326504 AAAAGAAAAGATGGTGCACTGG 57.673 40.909 17.98 0.00 0.00 4.00
1874 1876 7.569957 GCAAATAAAAGAAAAGATGGTGCACTG 60.570 37.037 17.98 1.17 0.00 3.66
1898 1900 2.760634 TTTAAGATGGTGCTCTCGCA 57.239 45.000 0.00 0.00 45.60 5.10
1986 1988 4.787381 TGAAATACCACGCACGATTATG 57.213 40.909 0.00 0.00 0.00 1.90
2047 2050 3.374220 TCTGCAGTGCTTTTCCAAATG 57.626 42.857 17.60 0.00 0.00 2.32
2052 2055 7.483307 TGATAAATTATCTGCAGTGCTTTTCC 58.517 34.615 17.60 3.76 36.17 3.13
2074 2077 8.918202 TCCAAACTTTAACTCAGTGTAATGAT 57.082 30.769 0.00 0.00 0.00 2.45
2217 2220 3.555966 AGTACCTGCAGAAAAGCAAAGT 58.444 40.909 17.39 3.32 45.13 2.66
2243 2246 6.073058 CCACCTTCCATATATCATCAACAACG 60.073 42.308 0.00 0.00 0.00 4.10
2294 2297 1.751924 CCCGGACTTGTTGTTGGAAAA 59.248 47.619 0.73 0.00 0.00 2.29
2351 2354 4.707030 TGATGAACAACATGATTCAGCC 57.293 40.909 18.00 12.23 39.85 4.85
2432 2438 8.481314 TCTTCAGAGTTGAATAGTCTTGCATAT 58.519 33.333 0.00 0.00 42.19 1.78
2531 2537 4.769688 CCAAGACACCAGATATAGCAACA 58.230 43.478 0.00 0.00 0.00 3.33
2869 2884 1.066430 TGACCTCGCTACATTTCCCAC 60.066 52.381 0.00 0.00 0.00 4.61
2974 2992 4.036027 GTGGATCATGATTTACACCAGCTG 59.964 45.833 19.95 6.78 0.00 4.24
2975 2993 4.202441 GTGGATCATGATTTACACCAGCT 58.798 43.478 19.95 0.00 0.00 4.24
2976 2994 3.947196 TGTGGATCATGATTTACACCAGC 59.053 43.478 24.19 15.33 0.00 4.85
3014 3035 1.021202 CGTTGTTCTGCAGGGACAAA 58.979 50.000 26.96 15.08 0.00 2.83
3248 3269 1.614241 GCCTTGCTACCTCTTCCGGA 61.614 60.000 0.00 0.00 0.00 5.14
3357 3378 3.135895 ACCTTACGACCCCCATTAAGATG 59.864 47.826 0.00 0.00 0.00 2.90
3369 3390 1.520787 CATCCGGCACCTTACGACC 60.521 63.158 0.00 0.00 0.00 4.79
3370 3391 0.527817 CTCATCCGGCACCTTACGAC 60.528 60.000 0.00 0.00 0.00 4.34
3372 3393 0.389391 ATCTCATCCGGCACCTTACG 59.611 55.000 0.00 0.00 0.00 3.18
3373 3394 2.610727 GCTATCTCATCCGGCACCTTAC 60.611 54.545 0.00 0.00 0.00 2.34
3405 3426 1.351350 ACCTTCCAACACTCTTAGCCC 59.649 52.381 0.00 0.00 0.00 5.19
3428 3449 1.605710 CTTTTCCCAGCTCACACACTG 59.394 52.381 0.00 0.00 0.00 3.66
3461 3616 1.654105 CGTCGATGTAAAGGTGCAGAC 59.346 52.381 0.00 0.00 0.00 3.51
3501 3656 2.103941 GGAGAACCATGAGTCCATCTCC 59.896 54.545 13.34 13.34 37.98 3.71
3510 3665 1.134670 GGAGGAACGGAGAACCATGAG 60.135 57.143 0.00 0.00 35.59 2.90
3602 3757 1.540363 GGTGCAGTTTCTCGAGGTTGA 60.540 52.381 13.56 0.00 0.00 3.18
3722 3877 4.813346 GGGGGTCGTCAAACATGT 57.187 55.556 0.00 0.00 0.00 3.21
3861 4016 3.548818 CGAAGAAAGAGTTGTTTGCAGGG 60.549 47.826 0.00 0.00 0.00 4.45
3865 4020 3.963383 TCCGAAGAAAGAGTTGTTTGC 57.037 42.857 0.00 0.00 0.00 3.68
3883 4038 7.280205 AGGATGTGACGAAAAATGTACTATTCC 59.720 37.037 0.00 0.00 0.00 3.01
3922 4077 1.538047 ATGTTTGTTGCGAGATGGCT 58.462 45.000 0.00 0.00 0.00 4.75
3999 4154 3.314541 GTTTCAGAGCTAGGAAACGGA 57.685 47.619 20.46 0.00 42.17 4.69
4041 4196 2.006888 CGGAGCTAGGAATCGCAAAAA 58.993 47.619 0.00 0.00 0.00 1.94
4042 4197 1.206132 TCGGAGCTAGGAATCGCAAAA 59.794 47.619 0.00 0.00 0.00 2.44
4090 4245 2.690881 ATGGCCCCAGCTTCCGTA 60.691 61.111 0.00 0.00 39.73 4.02
4133 4288 0.110644 CGCAGAAGAAAGAACGTGGC 60.111 55.000 0.00 0.00 0.00 5.01
4156 4311 3.384146 TCAGCTTTTCTTTCATTGTGGCA 59.616 39.130 0.00 0.00 0.00 4.92
4193 4348 4.893424 TGTAACAAGAACTTCAGTTGGC 57.107 40.909 0.00 4.46 38.56 4.52
4265 4420 8.815912 TGATCTGATCCGATCCTTTATTTATGA 58.184 33.333 20.48 0.00 39.20 2.15
4285 4440 6.849811 GCGACATTTGAAGATACAATGATCTG 59.150 38.462 0.00 0.00 36.28 2.90
4299 4454 2.560861 GCAGCGGCGACATTTGAA 59.439 55.556 12.98 0.00 0.00 2.69
4322 4477 7.081349 TCACATTTCACATAAACGTCATTTCC 58.919 34.615 0.00 0.00 0.00 3.13
4334 4489 8.032451 TGACTTACTCGATTCACATTTCACATA 58.968 33.333 0.00 0.00 0.00 2.29
4370 4525 7.559590 AGAGAGCATAAATAACACAATGTCC 57.440 36.000 0.00 0.00 0.00 4.02
4400 4555 2.392933 ACACCAACGCACGTAAAATG 57.607 45.000 0.00 0.00 0.00 2.32
4401 4556 2.541999 CCAACACCAACGCACGTAAAAT 60.542 45.455 0.00 0.00 0.00 1.82
4402 4557 1.202154 CCAACACCAACGCACGTAAAA 60.202 47.619 0.00 0.00 0.00 1.52
4403 4558 0.377554 CCAACACCAACGCACGTAAA 59.622 50.000 0.00 0.00 0.00 2.01
4404 4559 0.743701 ACCAACACCAACGCACGTAA 60.744 50.000 0.00 0.00 0.00 3.18
4405 4560 0.743701 AACCAACACCAACGCACGTA 60.744 50.000 0.00 0.00 0.00 3.57
4406 4561 2.041686 AACCAACACCAACGCACGT 61.042 52.632 0.00 0.00 0.00 4.49
4407 4562 1.585002 CAACCAACACCAACGCACG 60.585 57.895 0.00 0.00 0.00 5.34
4408 4563 0.800300 CACAACCAACACCAACGCAC 60.800 55.000 0.00 0.00 0.00 5.34
4409 4564 1.244697 ACACAACCAACACCAACGCA 61.245 50.000 0.00 0.00 0.00 5.24
4410 4565 0.800300 CACACAACCAACACCAACGC 60.800 55.000 0.00 0.00 0.00 4.84
4411 4566 0.800300 GCACACAACCAACACCAACG 60.800 55.000 0.00 0.00 0.00 4.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.